Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001471
(893 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001077269.1| immunoglobulin lambda-like polypeptide 1 [Bo... 242 3e-64
Alignment gi|XP_002701782.1| PREDICTED: immunoglobulin lambda-like polype... 235 4e-62
Alignment gi|XP_002694745.1| PREDICTED: IGL@ protein-like [Bos taurus]. 134 1e-31
Alignment gi|XP_002691399.1| PREDICTED: IGK protein-like [Bos taurus]. 116 3e-26
Alignment gi|XP_002700829.1| PREDICTED: IGK protein-like [Bos taurus]. 116 3e-26
Alignment gi|XP_001790304.2| PREDICTED: immunoglobulin iota chain-like, p... 115 7e-26
Alignment gi|XP_002694708.1| PREDICTED: immunoglobulin iota chain-like [B... 111 7e-25
Alignment gi|XP_002694688.1| PREDICTED: immunoglobulin iota chain-like, p... 109 4e-24
Alignment gi|XP_876407.2| PREDICTED: immunoglobin light chain VJ region, ... 104 1e-22
Alignment gi|XP_002694712.1| PREDICTED: immunoglobulin lambda-6a light ch... 98 1e-20
>ref|NP_001077269.1| immunoglobulin lambda-like polypeptide 1 [Bos taurus].
Length = 235
Score = 242 bits (618), Expect = 3e-64
Identities = 126/236 (53%), Positives = 162/236 (68%), Gaps = 2/236 (0%)
Frame = +1
Query: 43 MAWTVLLIGLLAVGSGVDSQTVIQEPA-MSVSPGGTVTLTCAFTSGSVTTSNYPSWFQQT 219
MAW+ LL+ L+A+ +G +Q V+ +P+ +S S G V++TC+ +S ++ +W+QQ
Sbjct: 1 MAWSPLLLTLVALCTGSWAQAVLTQPSSVSGSLGQRVSITCSGSSTNIGIYGV-NWYQQV 59
Query: 220 PGQPPRQLIYSTNNRPTGVPSRFSGAISGNKAALTITGAQAEDEADYFCRLYKSGDNIP- 396
PG + +IY RP+GVP RFSG+ SGN A LTI QAEDEADYFC N
Sbjct: 60 PGSGLKTIIYEDKYRPSGVPDRFSGSKSGNTATLTINSLQAEDEADYFCAAGDYSVNTAV 119
Query: 397 FGGGTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVT 576
FGGGT LTVLGQPK+ P+V LFPPS+EEL NKATLVCLISDFYPG+VTV WKA +T+T
Sbjct: 120 FGGGTTLTVLGQPKSPPSVTLFPPSTEELNGNKATLVCLISDFYPGSVTVVWKADGSTIT 179
Query: 577 QGVETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 744
+ VETT+ SKQSN+K DWKS ++C+VTHEG+ V KTV PSEC+
Sbjct: 180 RNVETTRASKQSNSKYAASSYLSLTSSDWKSKGSYSCEVTHEGSTVTKTVKPSECS 235
>ref|XP_002701782.1| PREDICTED: immunoglobulin lambda-like polypeptide 1-like [Bos
taurus].
Length = 236
Score = 235 bits (599), Expect = 4e-62
Identities = 122/239 (51%), Positives = 159/239 (66%), Gaps = 5/239 (2%)
Frame = +1
Query: 43 MAWTVLLIGLLAVGSG-VDSQTVIQEPAMSVSPGGTVTLTCAFTSGSVTTSNYPSWFQQT 219
MAWT LL+ LL + +G + S + Q PA+SVS G T ++TC + +++ W+QQ
Sbjct: 1 MAWTPLLLPLLTLCTGHLASSQLTQPPAVSVSLGQTASITCQGDDLELLSAH---WYQQK 57
Query: 220 PGQPPRQLIYSTNNRPTGVPSRFSGAISGNKAALTITGAQAEDEADYFCRLYKSGDNIP- 396
PGQ P +IY+ +N +G+P RFSG+ S A LTI GAQAEDEADY+C+ +
Sbjct: 58 PGQAPVLVIYADDNLASGIPDRFSGSKSDTTATLTIRGAQAEDEADYYCQSADISGPVSL 117
Query: 397 ---FGGGTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGST 567
FGGGT +TVLGQPK+ P+V LFPPS EEL NKATLVCLISDFYPG+VTV WKA +
Sbjct: 118 CDLFGGGTRVTVLGQPKSPPSVTLFPPSKEELSANKATLVCLISDFYPGSVTVAWKADGS 177
Query: 568 TVTQGVETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 744
T+T+ V+TT+ SKQSN+K DWKS ++C+VTHEG+ V KTV S C+
Sbjct: 178 TITRNVKTTRASKQSNSKYAASSYLSLTDSDWKSKGSYSCEVTHEGSTVTKTVKTSACS 236
>ref|XP_002694745.1| PREDICTED: IGL@ protein-like [Bos taurus].
Length = 260
Score = 134 bits (336), Expect = 1e-31
Identities = 87/249 (34%), Positives = 126/249 (50%), Gaps = 12/249 (4%)
Frame = +1
Query: 34 VPTMAWTVLLIGLLAVGSGVDSQTVIQE---PAMSVSPGGTVTLTCAFTSGSVTTSNYPS 204
VP W ++L+GL G+ T + P M +P G + ++G S P
Sbjct: 19 VPRQPWPLILLGLAVGAHGLLPPTAAPQSTAPRME-APSGKSPWSLRGSAGWADKSTPPG 77
Query: 205 WFQQTPGQPPRQLIYSTNNRPTGVPSRFSGAISGNKAALTITGAQAEDEAD-------YF 363
P ++ + GV SR A+ + ++IT ++ +
Sbjct: 78 LTF------PPAMVTERDGLNRGVTSRSGAALWPGHSPVSITPSRFPLRPGPRGPGPRCW 131
Query: 364 CRLYKSGDN--IPFGGGTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGA 537
++ G + FG GT +T+ QPK P+V LFPPS+EEL T ATLVCLISDFYPG
Sbjct: 132 RGVWPEGPSAWFTFGSGTKVTIPDQPKFPPSVTLFPPSTEELSTYTATLVCLISDFYPGN 191
Query: 538 VTVTWKAGSTTVTQGVETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVE 717
VTV WKA + VT+GV T++ S+QS++K +WK S ++C+VTHEG+ V
Sbjct: 192 VTVAWKADGSPVTRGVVTSQASQQSSSKYVASSYLTLTGSEWKPKSSYSCEVTHEGSTVT 251
Query: 718 KTVTPSECA 744
KTV PS C+
Sbjct: 252 KTVKPSACS 260
>ref|XP_002691399.1| PREDICTED: IGK protein-like [Bos taurus].
Length = 235
Score = 116 bits (290), Expect = 3e-26
Identities = 80/236 (33%), Positives = 125/236 (52%), Gaps = 9/236 (3%)
Frame = +1
Query: 61 LIGLLAV---GSGVDSQTVIQEPAMSVSPGGTVTLTCAFTSGSVTTSNYPSWFQQTPGQP 231
L+GLL + G D Q ++S S G V++TC S S+ T +W+QQ PG+
Sbjct: 7 LLGLLLLWLPGKEGDIQVTQSPSSLSASLGDRVSITCQ-ASQSIDTKL--AWYQQKPGKA 63
Query: 232 PRQLIYSTNNRPTGVPSRFSGAISGNKAALTITGAQAEDEADYFCRLYKSGDNIPFGGGT 411
P+ LIY+ P+ PS+FSG+ G LTI+ +A+D A Y+C L ++ FG GT
Sbjct: 64 PKLLIYAIPRSPSWFPSQFSGSGFGADFTLTISSLKADDIATYYC-LSRNCCVNTFGQGT 122
Query: 412 HLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVT----Q 579
+ + + A P+V LF PS E+L T ++VCL++DFYP + V WK T + Q
Sbjct: 123 KVEI-KRSDAEPSVFLFKPSDEQLKTGTVSVVCLVNDFYPKDINVKWKVDGVTQSSSNFQ 181
Query: 580 GVETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEG--TIVEKTVTPSEC 741
T + SK+S +++S +TC+V+H+ T + K+ + +EC
Sbjct: 182 NSFTDQDSKKST--YSLSSILTLPSSEYQSHDAYTCEVSHKSLTTTLVKSFSKNEC 235
>ref|XP_002700829.1| PREDICTED: IGK protein-like [Bos taurus].
Length = 235
Score = 116 bits (290), Expect = 3e-26
Identities = 80/236 (33%), Positives = 125/236 (52%), Gaps = 9/236 (3%)
Frame = +1
Query: 61 LIGLLAV---GSGVDSQTVIQEPAMSVSPGGTVTLTCAFTSGSVTTSNYPSWFQQTPGQP 231
L+GLL + G D Q ++S S G V++TC S S+ T +W+QQ PG+
Sbjct: 7 LLGLLLLWLPGKEGDIQVTQSPSSLSASLGDRVSITCQ-ASQSIDTKL--AWYQQKPGKA 63
Query: 232 PRQLIYSTNNRPTGVPSRFSGAISGNKAALTITGAQAEDEADYFCRLYKSGDNIPFGGGT 411
P+ LIY+ P+ PS+FSG+ G LTI+ +A+D A Y+C L ++ FG GT
Sbjct: 64 PKLLIYAIPRSPSWFPSQFSGSGFGADFTLTISSLKADDIATYYC-LSRNCCVNTFGQGT 122
Query: 412 HLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVT----Q 579
+ + + A P+V LF PS E+L T ++VCL++DFYP + V WK T + Q
Sbjct: 123 KVEI-KRSDAEPSVFLFKPSDEQLKTGTVSVVCLVNDFYPKDINVKWKVDGVTQSSSNFQ 181
Query: 580 GVETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEG--TIVEKTVTPSEC 741
T + SK+S +++S +TC+V+H+ T + K+ + +EC
Sbjct: 182 NSFTDQDSKKST--YSLSSILTLPSSEYQSHDAYTCEVSHKSLTTTLVKSFSKNEC 235
>ref|XP_001790304.2| PREDICTED: immunoglobulin iota chain-like, partial [Bos taurus].
Length = 218
Score = 115 bits (287), Expect = 7e-26
Identities = 57/118 (48%), Positives = 81/118 (68%), Gaps = 1/118 (0%)
Frame = +1
Query: 31 SVPTMAWTVLLIGLLAVGSGVDSQTVI-QEPAMSVSPGGTVTLTCAFTSGSVTTSNYPSW 207
+V TMAW+ LL+ L+ + +G +Q V+ Q P++S S G VT++C +S ++ N W
Sbjct: 49 TVSTMAWSPLLLTLVTLCTGSWAQAVLTQPPSVSGSLGQRVTISCTGSSSNIGGGNCVGW 108
Query: 208 FQQTPGQPPRQLIYSTNNRPTGVPSRFSGAISGNKAALTITGAQAEDEADYFCRLYKS 381
+QQ PG P+ LIY + +RP+GVP RFSG+ SGN A LTI+ QAEDEADY+C Y+S
Sbjct: 109 YQQIPGSAPKTLIYRSTSRPSGVPDRFSGSRSGNTATLTISSLQAEDEADYYCATYES 166
>ref|XP_002694708.1| PREDICTED: immunoglobulin iota chain-like [Bos taurus].
Length = 153
Score = 111 bits (278), Expect = 7e-25
Identities = 55/114 (48%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Frame = +1
Query: 43 MAWTVLLIGLLAVGSGVDSQTVI-QEPAMSVSPGGTVTLTCAFTSGSVTTSNYPSWFQQT 219
MAW+ LL+ L+ + +G +Q V+ Q P++S S G VT++C +S ++ N W+QQ
Sbjct: 1 MAWSPLLLTLVTLCTGSWAQAVLTQPPSVSGSLGQRVTISCTGSSSNIGGGNCVGWYQQI 60
Query: 220 PGQPPRQLIYSTNNRPTGVPSRFSGAISGNKAALTITGAQAEDEADYFCRLYKS 381
PG P+ LIY + +RP+GVP RFSG+ SGN A LTI+ QAEDEADY+C Y+S
Sbjct: 61 PGSAPKTLIYRSTSRPSGVPDRFSGSRSGNTATLTISSLQAEDEADYYCATYES 114
>ref|XP_002694688.1| PREDICTED: immunoglobulin iota chain-like, partial [Bos taurus].
Length = 169
Score = 109 bits (272), Expect = 4e-24
Identities = 64/138 (46%), Positives = 88/138 (63%), Gaps = 1/138 (0%)
Frame = +1
Query: 40 TMAWTVLLIGLLAVGSGVDSQTVIQEPA-MSVSPGGTVTLTCAFTSGSVTTSNYPSWFQQ 216
TMAW+ L + L+A+ +G +Q V+ +P+ +S S G V++TC +S +V + Y SWFQQ
Sbjct: 3 TMAWSPLFLTLVALCTGSWAQAVLTQPSSVSGSLGQRVSITCTGSSSNVG-NGYVSWFQQ 61
Query: 217 TPGQPPRQLIYSTNNRPTGVPSRFSGAISGNKAALTITGAQAEDEADYFCRLYKSGDNIP 396
PG PR LIY +R +GVP RFSG+ SGN A LTI+ QAEDEADYFC +GD+
Sbjct: 62 IPGSAPRTLIYGDTSRASGVPDRFSGSRSGNTATLTISSLQAEDEADYFC---AAGDS-- 116
Query: 397 FGGGTHLTVLGQPKATPT 450
++ TVL +PT
Sbjct: 117 --SSSNATVLQARGESPT 132
>ref|XP_876407.2| PREDICTED: immunoglobin light chain VJ region, partial [Bos
taurus].
Length = 126
Score = 104 bits (259), Expect = 1e-22
Identities = 55/109 (50%), Positives = 76/109 (69%), Gaps = 1/109 (0%)
Frame = +1
Query: 43 MAWTVLLIGLLAVGSGVDSQTVIQEPA-MSVSPGGTVTLTCAFTSGSVTTSNYPSWFQQT 219
MAW+ LL+ L+A+ +G +Q V+ +P+ +S S G V++TC+ +S +V + Y SW+Q
Sbjct: 1 MAWSPLLLTLVALFTGSWAQAVLTQPSSVSGSLGQRVSITCSGSSSNVG-NGYVSWYQLI 59
Query: 220 PGQPPRQLIYSTNNRPTGVPSRFSGAISGNKAALTITGAQAEDEADYFC 366
PG PR LIY +R +GVP RFSG+ SGN A LTI+ QAEDEADYFC
Sbjct: 60 PGSAPRTLIYGDTSRASGVPDRFSGSRSGNTATLTISSLQAEDEADYFC 108
>ref|XP_002694712.1| PREDICTED: immunoglobulin lambda-6a light chain variable
region-like [Bos taurus].
Length = 141
Score = 97.8 bits (242), Expect = 1e-20
Identities = 52/110 (47%), Positives = 73/110 (66%), Gaps = 1/110 (0%)
Frame = +1
Query: 43 MAWTVLLIGLLAVGSG-VDSQTVIQEPAMSVSPGGTVTLTCAFTSGSVTTSNYPSWFQQT 219
MAWT LL+ LL + +G + S + Q PA+SVS G T ++TC + +++ W+QQ
Sbjct: 1 MAWTPLLLPLLTLCAGHLASSQLTQPPAVSVSLGQTASITCQGDDLELLSAH---WYQQK 57
Query: 220 PGQPPRQLIYSTNNRPTGVPSRFSGAISGNKAALTITGAQAEDEADYFCR 369
PGQ P +IY+ +N +G+P RFSG+ S A LTI GAQAEDEADY+C+
Sbjct: 58 PGQAPVLVIYADDNLASGIPDRFSGSKSDTTATLTIRGAQAEDEADYYCQ 107
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.313 0.129 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,386,454
Number of extensions: 1137478
Number of successful extensions: 6531
Number of sequences better than 1.0e-05: 38
Number of HSP's gapped: 6426
Number of HSP's successfully gapped: 38
Length of query: 297
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 195
Effective length of database: 14,306,398
Effective search space: 2789747610
Effective search space used: 2789747610
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001471
(893 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_855821.1| PREDICTED: similar to Immunoglobulin lambda-lik... 259 3e-69
Alignment gi|XP_856188.1| PREDICTED: similar to Immunoglobulin lambda-lik... 253 1e-67
Alignment gi|XP_848579.1| PREDICTED: similar to Immunoglobulin lambda-lik... 252 4e-67
Alignment gi|XP_856144.1| PREDICTED: similar to Immunoglobulin lambda-lik... 251 5e-67
Alignment gi|XP_856357.1| PREDICTED: similar to Immunoglobulin lambda-lik... 251 6e-67
Alignment gi|XP_856315.1| PREDICTED: similar to Immunoglobulin lambda-lik... 251 8e-67
Alignment gi|XP_856398.1| PREDICTED: similar to Immunoglobulin lambda-lik... 250 1e-66
Alignment gi|XP_856233.1| PREDICTED: similar to Immunoglobulin lambda-lik... 250 1e-66
Alignment gi|XP_856064.1| PREDICTED: similar to Immunoglobulin lambda-lik... 250 1e-66
Alignment gi|XP_856106.1| PREDICTED: similar to Immunoglobulin lambda-lik... 248 4e-66
>ref|XP_855821.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
precursor (Immunoglobulin-related 14.1 protein)
(Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
antigen) isoform 3 [Canis familiaris].
Length = 231
Score = 259 bits (661), Expect = 3e-69
Identities = 137/235 (58%), Positives = 163/235 (69%), Gaps = 1/235 (0%)
Frame = +1
Query: 43 MAWTVLLIGLLAVGSG-VDSQTVIQEPAMSVSPGGTVTLTCAFTSGSVTTSNYPSWFQQT 219
MAWT LL+ LLA+ +G V S + Q P+ +V+ +TC G S W+QQ
Sbjct: 1 MAWTHLLLSLLALCTGSVASYVLTQLPSKNVTLKQPAHITCG---GDNIGSKSVHWYQQK 57
Query: 220 PGQPPRQLIYSTNNRPTGVPSRFSGAISGNKAALTITGAQAEDEADYFCRLYKSGDNIPF 399
GQ P +IY ++RPTG+P RFSGA SGN A LTI+GA AEDEADY+C+++ S + F
Sbjct: 58 LGQAPVLIIYYDSSRPTGIPERFSGANSGNTATLTISGALAEDEADYYCQVWDSSALV-F 116
Query: 400 GGGTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVTQ 579
GGGTHLTVLGQPKA+P+V LFPPSSEELG NKATLVCLISDFYP VTV WKA + VTQ
Sbjct: 117 GGGTHLTVLGQPKASPSVTLFPPSSEELGANKATLVCLISDFYPSGVTVAWKADGSPVTQ 176
Query: 580 GVETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 744
GVETTKPSKQSNNK WKS S F+C VTHEG+ VEK V P+EC+
Sbjct: 177 GVETTKPSKQSNNKYAASSYLSLTPDKWKSHSSFSCLVTHEGSTVEKKVAPAECS 231
>ref|XP_856188.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
precursor (Immunoglobulin-related 14.1 protein)
(Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
antigen) isoform 12 [Canis familiaris].
Length = 232
Score = 253 bits (647), Expect = 1e-67
Identities = 128/235 (54%), Positives = 161/235 (68%), Gaps = 1/235 (0%)
Frame = +1
Query: 43 MAWTVLLIGLLAVGSG-VDSQTVIQEPAMSVSPGGTVTLTCAFTSGSVTTSNYPSWFQQT 219
MAWT+LL+G LA +G V S + Q P++SV+ G T ++TC G+ W+QQ
Sbjct: 1 MAWTLLLLGFLAHCTGSVASYVLTQSPSVSVTLGQTASITCR---GNSIGRKDVHWYQQK 57
Query: 220 PGQPPRQLIYSTNNRPTGVPSRFSGAISGNKAALTITGAQAEDEADYFCRLYKSGDNIPF 399
PGQ P +IY+ N++P+G+P RFSG SG+ A LTI+ AQ DEADY+C+++ G F
Sbjct: 58 PGQAPLLIIYNDNSQPSGIPERFSGTNSGSTATLTISEAQTNDEADYYCQVHGGGGCWVF 117
Query: 400 GGGTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVTQ 579
G GT LTVLGQPK++P V LFPPSSEELG NKATLVCLISDFYP + V WKA +T+ Q
Sbjct: 118 GEGTQLTVLGQPKSSPLVTLFPPSSEELGANKATLVCLISDFYPSGLKVAWKADGSTIIQ 177
Query: 580 GVETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 744
GVETTKPSKQSNNK WKS S F+C VTH+G+ VEK V P+EC+
Sbjct: 178 GVETTKPSKQSNNKYTASSYLSLTPDKWKSHSSFSCLVTHQGSTVEKKVAPAECS 232
>ref|XP_848579.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
precursor (Immunoglobulin-related 14.1 protein)
(Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
antigen) isoform 1 [Canis familiaris].
Length = 233
Score = 252 bits (643), Expect = 4e-67
Identities = 129/236 (54%), Positives = 163/236 (69%), Gaps = 2/236 (0%)
Frame = +1
Query: 43 MAWTVLLIGLLAVGSG-VDSQTVIQEPAMSVSPGGTVTLTCAFTSGSVTTSNYPSWFQQT 219
MAWT+LL+G LA +G V S + Q P++SV+ G T ++TC G+ W+QQ
Sbjct: 1 MAWTLLLLGFLAHCTGSVASYVLTQSPSVSVTLGQTASITCR---GNSIGRKDVHWYQQK 57
Query: 220 PGQPPRQLIYSTNNRPTGVPSRFSGAISGNKAALTITGAQAEDEADYFCRLYKSG-DNIP 396
PGQ P +IY+ N++P+G+P RFSG SG+ A LTI+ AQ DEADY+C++++S D
Sbjct: 58 PGQAPLLIIYNDNSQPSGIPERFSGTNSGSTATLTISEAQTNDEADYYCQVWESSADCWV 117
Query: 397 FGGGTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVT 576
FG GT LTVLGQPK++P V LFPPSSEELG NKATLVCLISDFYP + V WKA +T+
Sbjct: 118 FGEGTQLTVLGQPKSSPLVTLFPPSSEELGANKATLVCLISDFYPSGLKVAWKADGSTII 177
Query: 577 QGVETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 744
QGVETTKPSKQSNNK WKS S F+C VTH+G+ VEK V P+EC+
Sbjct: 178 QGVETTKPSKQSNNKYTASSYLSLTPDKWKSHSSFSCLVTHQGSTVEKKVAPAECS 233
>ref|XP_856144.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
precursor (Immunoglobulin-related 14.1 protein)
(Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
antigen) isoform 11 [Canis familiaris].
Length = 232
Score = 251 bits (642), Expect = 5e-67
Identities = 127/235 (54%), Positives = 160/235 (68%), Gaps = 1/235 (0%)
Frame = +1
Query: 43 MAWTVLLIGLLAVGSG-VDSQTVIQEPAMSVSPGGTVTLTCAFTSGSVTTSNYPSWFQQT 219
MAWT+LL+G LA +G V S + Q P++SV+ G T ++TC G+ W+QQ
Sbjct: 1 MAWTLLLLGFLAHCTGSVASYVLTQSPSVSVTLGQTASITCR---GNSIGRKDVHWYQQK 57
Query: 220 PGQPPRQLIYSTNNRPTGVPSRFSGAISGNKAALTITGAQAEDEADYFCRLYKSGDNIPF 399
PGQ P +IY+ N++P+G+P RFSG SG+ A LTI+ AQ DEADY+C+ ++ F
Sbjct: 58 PGQAPLLIIYNDNSQPSGIPERFSGTNSGSTATLTISEAQTNDEADYYCQKHRGAGCWVF 117
Query: 400 GGGTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVTQ 579
G GT LTVLGQPK++P V LFPPSSEELG NKATLVCLISDFYP + V WKA +T+ Q
Sbjct: 118 GEGTQLTVLGQPKSSPLVTLFPPSSEELGANKATLVCLISDFYPSGLKVAWKADGSTIIQ 177
Query: 580 GVETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 744
GVETTKPSKQSNNK WKS S F+C VTH+G+ VEK V P+EC+
Sbjct: 178 GVETTKPSKQSNNKYTASSYLSLTPDKWKSHSSFSCLVTHQGSTVEKKVAPAECS 232
>ref|XP_856357.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
precursor (Immunoglobulin-related 14.1 protein)
(Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
antigen) isoform 16 [Canis familiaris].
Length = 232
Score = 251 bits (641), Expect = 6e-67
Identities = 127/235 (54%), Positives = 162/235 (68%), Gaps = 1/235 (0%)
Frame = +1
Query: 43 MAWTVLLIGLLAVGSG-VDSQTVIQEPAMSVSPGGTVTLTCAFTSGSVTTSNYPSWFQQT 219
MAWT+LL+G LA +G V S + Q P++SV+ G T ++TC G+ W+QQ
Sbjct: 1 MAWTLLLLGFLAHCTGSVASYVLTQSPSVSVTLGQTASITCR---GNSIGRKDVHWYQQK 57
Query: 220 PGQPPRQLIYSTNNRPTGVPSRFSGAISGNKAALTITGAQAEDEADYFCRLYKSGDNIPF 399
PGQ P +IY+ N++P+G+P RFSG SG+ A LTI+ AQ DEADY+C+++++ F
Sbjct: 58 PGQAPLLIIYNDNSQPSGIPERFSGTNSGSTATLTISEAQTNDEADYYCQVWENKYCWVF 117
Query: 400 GGGTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVTQ 579
G GT LTVLGQPK++P V LFPPSSEELG NKATLVCLISDFYP + V WKA +T+ Q
Sbjct: 118 GEGTQLTVLGQPKSSPLVTLFPPSSEELGANKATLVCLISDFYPSGLKVAWKADGSTIIQ 177
Query: 580 GVETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 744
GVETTKPSKQSNNK WKS S F+C VTH+G+ VEK V P+EC+
Sbjct: 178 GVETTKPSKQSNNKYTASSYLSLTPDKWKSHSSFSCLVTHQGSTVEKKVAPAECS 232
>ref|XP_856315.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
precursor (Immunoglobulin-related 14.1 protein)
(Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
antigen) isoform 15 [Canis familiaris].
Length = 232
Score = 251 bits (640), Expect = 8e-67
Identities = 127/235 (54%), Positives = 161/235 (68%), Gaps = 1/235 (0%)
Frame = +1
Query: 43 MAWTVLLIGLLAVGSG-VDSQTVIQEPAMSVSPGGTVTLTCAFTSGSVTTSNYPSWFQQT 219
MAWT+LL+G LA +G V S + Q P++SV+ G T ++TC G+ W+QQ
Sbjct: 1 MAWTLLLLGFLAHCTGSVASYVLTQSPSVSVTLGQTASITCR---GNSIGRKDVHWYQQK 57
Query: 220 PGQPPRQLIYSTNNRPTGVPSRFSGAISGNKAALTITGAQAEDEADYFCRLYKSGDNIPF 399
PGQ P +IY+ N++P+G+P RFSG SG+ A LTI+ AQ DEADY+C++++ F
Sbjct: 58 PGQAPLLIIYNDNSQPSGIPERFSGTNSGSTATLTISEAQTNDEADYYCQVWEISVCWVF 117
Query: 400 GGGTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVTQ 579
G GT LTVLGQPK++P V LFPPSSEELG NKATLVCLISDFYP + V WKA +T+ Q
Sbjct: 118 GEGTQLTVLGQPKSSPLVTLFPPSSEELGANKATLVCLISDFYPSGLKVAWKADGSTIIQ 177
Query: 580 GVETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 744
GVETTKPSKQSNNK WKS S F+C VTH+G+ VEK V P+EC+
Sbjct: 178 GVETTKPSKQSNNKYTASSYLSLTPDKWKSHSSFSCLVTHQGSTVEKKVAPAECS 232
>ref|XP_856398.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
precursor (Immunoglobulin-related 14.1 protein)
(Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
antigen) isoform 17 [Canis familiaris].
Length = 234
Score = 250 bits (639), Expect = 1e-66
Identities = 128/237 (54%), Positives = 162/237 (68%), Gaps = 3/237 (1%)
Frame = +1
Query: 43 MAWTVLLIGLLAVGSG-VDSQTVIQEPAMSVSPGGTVTLTCAFTSGSVTTSNYPSWFQQT 219
MAWT+LL+G LA +G V S + Q P++SV+ G T ++TC G+ W+QQ
Sbjct: 1 MAWTLLLLGFLAHCTGSVASYVLTQSPSVSVTLGQTASITCR---GNSIGRKDVHWYQQK 57
Query: 220 PGQPPRQLIYSTNNRPTGVPSRFSGAISGNKAALTITGAQAEDEADYFCRLYKSGDNI-- 393
PGQ P +IY+ N++P+G+P RFSG SG+ A LTI+ AQ DEADY+C++++S
Sbjct: 58 PGQAPLLIIYNDNSQPSGIPERFSGTNSGSTATLTISEAQTNDEADYYCQVWESSSKNCW 117
Query: 394 PFGGGTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTV 573
FG GT LTVLGQPK++P V LFPPSSEELG NKATLVCLISDFYP + V WKA +T+
Sbjct: 118 VFGEGTQLTVLGQPKSSPLVTLFPPSSEELGANKATLVCLISDFYPSGLKVAWKADGSTI 177
Query: 574 TQGVETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 744
QGVETTKPSKQSNNK WKS S F+C VTH+G+ VEK V P+EC+
Sbjct: 178 IQGVETTKPSKQSNNKYTASSYLSLTPDKWKSHSSFSCLVTHQGSTVEKKVAPAECS 234
>ref|XP_856233.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
precursor (Immunoglobulin-related 14.1 protein)
(Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
antigen) isoform 13 [Canis familiaris].
Length = 232
Score = 250 bits (639), Expect = 1e-66
Identities = 128/235 (54%), Positives = 159/235 (67%), Gaps = 1/235 (0%)
Frame = +1
Query: 43 MAWTVLLIGLLAVGSG-VDSQTVIQEPAMSVSPGGTVTLTCAFTSGSVTTSNYPSWFQQT 219
MAWT+LL+G LA +G V S + Q P++SV+ G T ++TC G+ W+QQ
Sbjct: 1 MAWTLLLLGFLAHCTGSVASYVLTQSPSVSVTLGQTASITCR---GNSIGRKDVHWYQQK 57
Query: 220 PGQPPRQLIYSTNNRPTGVPSRFSGAISGNKAALTITGAQAEDEADYFCRLYKSGDNIPF 399
PGQ P +IY+ N++P+G+P RFSG SG+ A LTI+ AQ DEADY+C+ Y F
Sbjct: 58 PGQAPLLIIYNDNSQPSGIPERFSGTNSGSTATLTISEAQTNDEADYYCQHYHHDYCWVF 117
Query: 400 GGGTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVTQ 579
G GT LTVLGQPK++P V LFPPSSEELG NKATLVCLISDFYP + V WKA +T+ Q
Sbjct: 118 GEGTQLTVLGQPKSSPLVTLFPPSSEELGANKATLVCLISDFYPSGLKVAWKADGSTIIQ 177
Query: 580 GVETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 744
GVETTKPSKQSNNK WKS S F+C VTH+G+ VEK V P+EC+
Sbjct: 178 GVETTKPSKQSNNKYTASSYLSLTPDKWKSHSSFSCLVTHQGSTVEKKVAPAECS 232
>ref|XP_856064.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
precursor (Immunoglobulin-related 14.1 protein)
(Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
antigen) isoform 9 [Canis familiaris].
Length = 231
Score = 250 bits (638), Expect = 1e-66
Identities = 128/235 (54%), Positives = 161/235 (68%), Gaps = 1/235 (0%)
Frame = +1
Query: 43 MAWTVLLIGLLAVGSG-VDSQTVIQEPAMSVSPGGTVTLTCAFTSGSVTTSNYPSWFQQT 219
MAWT+LL+G LA +G V S + Q P++SV+ G T ++TC G+ W+QQ
Sbjct: 1 MAWTLLLLGFLAHCTGSVASYVLTQSPSVSVTLGQTASITCR---GNSIGRKDVHWYQQK 57
Query: 220 PGQPPRQLIYSTNNRPTGVPSRFSGAISGNKAALTITGAQAEDEADYFCRLYKSGDNIPF 399
PGQ P +IY+ N++P+G+P RFSG SG+ A LTI+ AQ DEADY+C++ G + F
Sbjct: 58 PGQAPLLIIYNDNSQPSGIPERFSGTNSGSTATLTISEAQTNDEADYYCQVLMGGCWV-F 116
Query: 400 GGGTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVTQ 579
G GT LTVLGQPK++P V LFPPSSEELG NKATLVCLISDFYP + V WKA +T+ Q
Sbjct: 117 GEGTQLTVLGQPKSSPLVTLFPPSSEELGANKATLVCLISDFYPSGLKVAWKADGSTIIQ 176
Query: 580 GVETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 744
GVETTKPSKQSNNK WKS S F+C VTH+G+ VEK V P+EC+
Sbjct: 177 GVETTKPSKQSNNKYTASSYLSLTPDKWKSHSSFSCLVTHQGSTVEKKVAPAECS 231
>ref|XP_856106.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
precursor (Immunoglobulin-related 14.1 protein)
(Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
antigen) isoform 10 [Canis familiaris].
Length = 231
Score = 248 bits (634), Expect = 4e-66
Identities = 128/235 (54%), Positives = 160/235 (68%), Gaps = 1/235 (0%)
Frame = +1
Query: 43 MAWTVLLIGLLAVGSG-VDSQTVIQEPAMSVSPGGTVTLTCAFTSGSVTTSNYPSWFQQT 219
MAWT+LL+G LA +G V S + Q P++SV+ G T ++TC G+ W+QQ
Sbjct: 1 MAWTLLLLGFLAHCTGSVASYVLTQSPSVSVTLGQTASITCR---GNSIGRKDVHWYQQK 57
Query: 220 PGQPPRQLIYSTNNRPTGVPSRFSGAISGNKAALTITGAQAEDEADYFCRLYKSGDNIPF 399
PGQ P +IY+ N++P+G+P RFSG SG+ A LTI+ AQ DEADY+C++ G F
Sbjct: 58 PGQAPLLIIYNDNSQPSGIPERFSGTNSGSTATLTISEAQTNDEADYYCQV-SLGSCWVF 116
Query: 400 GGGTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVTQ 579
G GT LTVLGQPK++P V LFPPSSEELG NKATLVCLISDFYP + V WKA +T+ Q
Sbjct: 117 GEGTQLTVLGQPKSSPLVTLFPPSSEELGANKATLVCLISDFYPSGLKVAWKADGSTIIQ 176
Query: 580 GVETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 744
GVETTKPSKQSNNK WKS S F+C VTH+G+ VEK V P+EC+
Sbjct: 177 GVETTKPSKQSNNKYTASSYLSLTPDKWKSHSSFSCLVTHQGSTVEKKVAPAECS 231
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.313 0.129 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,015,283
Number of extensions: 1166051
Number of successful extensions: 7095
Number of sequences better than 1.0e-05: 229
Number of HSP's gapped: 6705
Number of HSP's successfully gapped: 241
Length of query: 297
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 195
Effective length of database: 15,474,232
Effective search space: 3017475240
Effective search space used: 3017475240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001471
(893 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001171597.1| immunoglobulin lambda-like polypeptide 5 [Ho... 162 4e-40
Alignment gi|NP_064455.1| immunoglobulin lambda-like polypeptide 1 isofor... 157 2e-38
Alignment gi|XP_001719673.2| PREDICTED: immunoglobulin omega chain-like [... 86 5e-17
Alignment gi|XP_003403801.1| PREDICTED: ig kappa chain V-III region VG-li... 85 8e-17
Alignment gi|XP_003403553.1| PREDICTED: ig kappa chain V-III region VH-li... 84 1e-16
Alignment gi|XP_003403579.1| PREDICTED: ig kappa chain V-III region VH-li... 84 2e-16
Alignment gi|XP_003403802.1| PREDICTED: ig kappa chain V-III region VH-li... 84 2e-16
Alignment gi|XP_003403551.1| PREDICTED: ig kappa chain V-I region Walker-... 83 4e-16
Alignment gi|XP_003403806.1| PREDICTED: ig kappa chain V-I region Walker-... 83 4e-16
Alignment gi|XP_003403581.1| PREDICTED: ig kappa chain V-I region Walker-... 82 9e-16
>ref|NP_001171597.1| immunoglobulin lambda-like polypeptide 5 [Homo sapiens].
Length = 214
Score = 162 bits (410), Expect = 4e-40
Identities = 79/116 (68%), Positives = 86/116 (74%)
Frame = +1
Query: 397 FGGGTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVT 576
FG GT +TVLGQPKA PTV LFPPSSEEL NKATLVCLISDFYPGAVTV WKA + V
Sbjct: 99 FGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVK 158
Query: 577 QGVETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 744
GVETTKPSKQSNNK WKS ++CQVTHEG+ VEKTV P+EC+
Sbjct: 159 AGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS 214
>ref|NP_064455.1| immunoglobulin lambda-like polypeptide 1 isoform a precursor [Homo
sapiens].
Length = 213
Score = 157 bits (396), Expect = 2e-38
Identities = 74/116 (63%), Positives = 85/116 (73%)
Frame = +1
Query: 397 FGGGTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVT 576
FG GT LTVL QPKATP+V LFPPSSEEL NKATLVCL++DFYPG +TVTWKA T +T
Sbjct: 98 FGSGTQLTVLSQPKATPSVTLFPPSSEELQANKATLVCLMNDFYPGILTVTWKADGTPIT 157
Query: 577 QGVETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 744
QGVE T PSKQSNNK W+S ++CQV HEG+ VEKTV P+EC+
Sbjct: 158 QGVEMTTPSKQSNNKYAASSYLSLTPEQWRSRRSYSCQVMHEGSTVEKTVAPAECS 213
>ref|XP_001719673.2| PREDICTED: immunoglobulin omega chain-like [Homo sapiens].
Length = 147
Score = 85.9 bits (211), Expect = 5e-17
Identities = 51/120 (42%), Positives = 70/120 (58%), Gaps = 7/120 (5%)
Frame = +1
Query: 43 MAWTVLLIGLLAVGSGVDSQTVIQEP-AMSVSPGGTVTLTCAFTSGSVTTSNYPSWFQQT 219
MAWT LL+ L+ +G SQ V+ +P ++S SPG + TC SG + W+QQ
Sbjct: 1 MAWTPLLLLFLSHCTGSLSQPVLTQPTSLSASPGASARFTCTLRSGINVGTYRIYWYQQK 60
Query: 220 PGQPPRQLIY----STNNRPTGVPSRFSGA--ISGNKAALTITGAQAEDEADYFCRLYKS 381
PG PR L+ S + +GVPSRFSG+ S N L I+G Q+EDEADY+C ++ S
Sbjct: 61 PGSLPRYLLRYKSDSDKQQGSGVPSRFSGSKDASTNAGLLLISGLQSEDEADYYCAIWYS 120
>ref|XP_003403801.1| PREDICTED: ig kappa chain V-III region VG-like [Homo sapiens].
Length = 152
Score = 85.1 bits (209), Expect = 8e-17
Identities = 46/106 (43%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Frame = +1
Query: 55 VLLIGLLAVGSGVDSQTVIQEPA-MSVSPGGTVTLTCAFTSGSVTTSNYPSWFQQTPGQP 231
+L + LL + + Q PA +S+SPG TL+C S + S+Y +W+QQ PGQ
Sbjct: 7 LLFLLLLWLPDTTGEIVLTQSPATLSLSPGERATLSCR---ASQSVSSYLAWYQQKPGQA 63
Query: 232 PRQLIYSTNNRPTGVPSRFSGAISGNKAALTITGAQAEDEADYFCR 369
PR LIY +NR TG+P+RFSG+ SG LTI+ + ED A Y+C+
Sbjct: 64 PRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQ 109
>ref|XP_003403553.1| PREDICTED: ig kappa chain V-III region VH-like [Homo sapiens].
Length = 151
Score = 84.3 bits (207), Expect = 1e-16
Identities = 46/106 (43%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Frame = +1
Query: 55 VLLIGLLAVGSGVDSQTVIQEPA-MSVSPGGTVTLTCAFTSGSVTTSNYPSWFQQTPGQP 231
+L + LL + + Q PA +S+SPG TL+C + +S+Y SW+QQ PGQ
Sbjct: 7 LLFLLLLWLPDTTGEIVMTQSPATLSLSPGERATLSCRASQS--VSSSYLSWYQQKPGQA 64
Query: 232 PRQLIYSTNNRPTGVPSRFSGAISGNKAALTITGAQAEDEADYFCR 369
PR LIY + R TG+P+RFSG+ SG LTI+ Q ED A Y+C+
Sbjct: 65 PRLLIYGASTRATGIPARFSGSGSGTDFTLTISSLQPEDFAVYYCQ 110
>ref|XP_003403579.1| PREDICTED: ig kappa chain V-III region VH-like [Homo sapiens].
Length = 155
Score = 84.0 bits (206), Expect = 2e-16
Identities = 43/87 (49%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Frame = +1
Query: 112 QEPA-MSVSPGGTVTLTCAFTSGSVTTSNYPSWFQQTPGQPPRQLIYSTNNRPTGVPSRF 288
Q PA +S+SPG TL+C + +S+Y SW+QQ PGQ PR LIY + R TG+P+RF
Sbjct: 29 QSPATLSLSPGERATLSCRASQS--VSSSYLSWYQQKPGQAPRLLIYGASTRATGIPARF 86
Query: 289 SGAISGNKAALTITGAQAEDEADYFCR 369
SG+ SG LTI+ Q ED A Y+C+
Sbjct: 87 SGSGSGTDFTLTISSLQPEDFAVYYCQ 113
>ref|XP_003403802.1| PREDICTED: ig kappa chain V-III region VH-like [Homo sapiens].
Length = 170
Score = 84.0 bits (206), Expect = 2e-16
Identities = 43/87 (49%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Frame = +1
Query: 112 QEPA-MSVSPGGTVTLTCAFTSGSVTTSNYPSWFQQTPGQPPRQLIYSTNNRPTGVPSRF 288
Q PA +S+SPG TL+C + +S+Y SW+QQ PGQ PR LIY + R TG+P+RF
Sbjct: 44 QSPATLSLSPGERATLSCRASQS--VSSSYLSWYQQKPGQAPRLLIYGASTRATGIPARF 101
Query: 289 SGAISGNKAALTITGAQAEDEADYFCR 369
SG+ SG LTI+ Q ED A Y+C+
Sbjct: 102 SGSGSGTDFTLTISSLQPEDFAVYYCQ 128
>ref|XP_003403551.1| PREDICTED: ig kappa chain V-I region Walker-like [Homo sapiens].
Length = 191
Score = 82.8 bits (203), Expect = 4e-16
Identities = 47/105 (44%), Positives = 62/105 (59%), Gaps = 3/105 (2%)
Frame = +1
Query: 61 LIGLLAV---GSGVDSQTVIQEPAMSVSPGGTVTLTCAFTSGSVTTSNYPSWFQQTPGQP 231
L+GLL + G+ D Q ++S S G VT+TC + G SN SW+QQ PGQ
Sbjct: 9 LLGLLLLWLRGARCDIQVTQSPSSLSASVGDRVTITCRASQG---ISNGLSWYQQKPGQA 65
Query: 232 PRQLIYSTNNRPTGVPSRFSGAISGNKAALTITGAQAEDEADYFC 366
P LIY+ ++ +GVPSRFSG+ SG LTI+ Q ED A Y+C
Sbjct: 66 PTLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDVATYYC 110
>ref|XP_003403806.1| PREDICTED: ig kappa chain V-I region Walker-like [Homo sapiens].
Length = 191
Score = 82.8 bits (203), Expect = 4e-16
Identities = 47/105 (44%), Positives = 62/105 (59%), Gaps = 3/105 (2%)
Frame = +1
Query: 61 LIGLLAV---GSGVDSQTVIQEPAMSVSPGGTVTLTCAFTSGSVTTSNYPSWFQQTPGQP 231
L+GLL + G+ D Q ++S S G VT+TC + G SN SW+QQ PGQ
Sbjct: 9 LLGLLLLWLRGARCDIQVTQSPSSLSASVGDRVTITCRASQG---ISNGLSWYQQKPGQA 65
Query: 232 PRQLIYSTNNRPTGVPSRFSGAISGNKAALTITGAQAEDEADYFC 366
P LIY+ ++ +GVPSRFSG+ SG LTI+ Q ED A Y+C
Sbjct: 66 PTLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDVATYYC 110
>ref|XP_003403581.1| PREDICTED: ig kappa chain V-I region Walker-like [Homo sapiens].
Length = 164
Score = 81.6 bits (200), Expect = 9e-16
Identities = 43/103 (41%), Positives = 62/103 (60%)
Frame = +1
Query: 61 LIGLLAVGSGVDSQTVIQEPAMSVSPGGTVTLTCAFTSGSVTTSNYPSWFQQTPGQPPRQ 240
L+GL G+ D Q ++S S GG VT+TC + G SN +W+QQ PG+ P+
Sbjct: 51 LLGLWLPGARCDIQMTQSPSSLSASVGGRVTITCRASQG---ISNNLNWYQQKPGKTPKL 107
Query: 241 LIYSTNNRPTGVPSRFSGAISGNKAALTITGAQAEDEADYFCR 369
LIY+ ++ +G+PSRFS + SG LTI+ Q ED A Y+C+
Sbjct: 108 LIYAASSLQSGIPSRFSDSGSGADYTLTISSLQPEDFAAYYCQ 150
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.313 0.129 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,057,992
Number of extensions: 1126477
Number of successful extensions: 6180
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 6143
Number of HSP's successfully gapped: 21
Length of query: 297
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 195
Effective length of database: 14,934,836
Effective search space: 2912293020
Effective search space used: 2912293020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001471
(893 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001177254.1| immunoglobulin lambda-like polypeptide 1 [Mu... 140 2e-33
Alignment gi|NP_058678.1| immunoglobulin iota chain precursor [Mus muscul... 69 4e-12
Alignment gi|NP_058679.1| immunoglobulin omega chain precursor [Mus muscu... 69 5e-12
Alignment gi|XP_357633.3| PREDICTED: similar to Ig kappa chain V-V region... 67 1e-11
Alignment gi|NP_033540.1| pre-B lymphocyte protein 3 [Mus musculus]. 66 4e-11
Alignment gi|XP_001473697.1| PREDICTED: signal-regulatory protein beta-2-... 52 5e-07
Alignment gi|NP_001002898.1| signal-regulatory protein beta 1 [Mus muscul... 51 1e-06
Alignment gi|NP_001166931.1| signal-regulatory protein beta 1B [Mus muscu... 50 3e-06
Alignment gi|NP_001166930.1| signal-regulatory protein beta 1-like [Mus m... 49 5e-06
>ref|NP_001177254.1| immunoglobulin lambda-like polypeptide 1 [Mus musculus].
Length = 209
Score = 140 bits (352), Expect = 2e-33
Identities = 65/116 (56%), Positives = 80/116 (68%)
Frame = +1
Query: 397 FGGGTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVT 576
FGGGT LT+LGQPK+ P V LF PS + L NKATLVCL+S+FYPG + V WK VT
Sbjct: 94 FGGGTQLTILGQPKSDPLVTLFLPSLKNLQANKATLVCLVSEFYPGTLVVDWKVDGVPVT 153
Query: 577 QGVETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 744
QGVETT+PSKQ+NNK W S ++C+VTHEG VEK+V+P+EC+
Sbjct: 154 QGVETTQPSKQTNNKYMVSSYLTLISDQWMPHSRYSCRVTHEGNTVEKSVSPAECS 209
>ref|NP_058678.1| immunoglobulin iota chain precursor [Mus musculus].
Length = 142
Score = 69.3 bits (168), Expect = 4e-12
Identities = 42/115 (36%), Positives = 64/115 (55%), Gaps = 7/115 (6%)
Frame = +1
Query: 43 MAWTVLLIGLLAVGSGVDSQTVIQEPAM-SVSPGGTVTLTCAFTSGSVTTSNYPSWFQQT 219
MAWT +L+ LLA +G Q ++ +P + S S G T+ L+C ++ W+QQ
Sbjct: 1 MAWTSVLLMLLAYLTGCGPQPMVHQPPLASSSLGATIRLSCTLSNDHNIGIYSIYWYQQR 60
Query: 220 PGQPPRQLI----YSTNNRPTGVPSRFSGA--ISGNKAALTITGAQAEDEADYFC 366
PG PPR L+ +S ++ +P RFSG+ + N L+I+ Q EDEA Y+C
Sbjct: 61 PGHPPRFLLRYFSHSDKHQGPDIPPRFSGSKDTTRNLGYLSISELQPEDEAVYYC 115
>ref|NP_058679.1| immunoglobulin omega chain precursor [Mus musculus].
Length = 142
Score = 68.9 bits (167), Expect = 5e-12
Identities = 43/115 (37%), Positives = 64/115 (55%), Gaps = 7/115 (6%)
Frame = +1
Query: 43 MAWTVLLIGLLAVGSGVDSQTVI-QEPAMSVSPGGTVTLTCAFTSGSVTTSNYPSWFQQT 219
MAWT +L+ LLA +G Q ++ Q P+ S S G T+ L+C ++ W+QQ
Sbjct: 1 MAWTSVLLMLLAHLTGCGPQPMVHQPPSASSSLGATIRLSCTLSNDHNIGIYSIYWYQQR 60
Query: 220 PGQPPRQLI----YSTNNRPTGVPSRFSGA--ISGNKAALTITGAQAEDEADYFC 366
PG PPR L+ +S ++ +P RFSG+ + N L+I+ Q EDEA Y+C
Sbjct: 61 PGHPPRFLLRYFSHSDKHQGPDIPPRFSGSKDTARNLGYLSISELQPEDEAVYYC 115
>ref|XP_357633.3| PREDICTED: similar to Ig kappa chain V-V region L7 precursor [Mus
musculus].
Length = 216
Score = 67.4 bits (163), Expect = 1e-11
Identities = 41/112 (36%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Frame = +1
Query: 43 MAWTVLLIGLLAVGSGVDSQTVI--QEPA-MSVSPGGTVTLTCAFTSGSVTTSNYPSWFQ 213
M T L+GLL + ++ Q PA +SV+PG V+L+C S + S+Y W+Q
Sbjct: 84 MVSTSQLLGLLLFWTSASRCDIVMTQSPATLSVTPGDRVSLSCR---ASQSISDYLHWYQ 140
Query: 214 QTPGQPPRQLIYSTNNRPTGVPSRFSGAISGNKAALTITGAQAEDEADYFCR 369
Q + PR LI + +G+PSRFSG+ SG+ L+I + ED Y+C+
Sbjct: 141 QKSHESPRLLIKYASQSISGIPSRFSGSGSGSDFTLSINSVEPEDVGVYYCQ 192
>ref|NP_033540.1| pre-B lymphocyte protein 3 [Mus musculus].
Length = 123
Score = 65.9 bits (159), Expect = 4e-11
Identities = 41/109 (37%), Positives = 52/109 (47%), Gaps = 8/109 (7%)
Frame = +1
Query: 70 LLAVGS--GVDSQTVIQEPAMSVSPGGTVTLTCAFTSGSVTTSNYP-SWFQQTPGQPPRQ 240
LL +G+ V T+ Q A SV PG L+C S T + SW+QQ PG P
Sbjct: 9 LLLIGTFVAVFQPTLTQPDAFSVFPGQDAHLSCTINSQHATAGDIGVSWYQQQPGSAPHL 68
Query: 241 LIYSTNN---RPTGVPSRFSGAISG--NKAALTITGAQAEDEADYFCRL 372
L Y RP +P RFS + N LTI+ ED+ADYFC +
Sbjct: 69 LYYYAEEEHYRPADIPDRFSATVDAAHNACILTISPVLPEDDADYFCSI 117
>ref|XP_001473697.1| PREDICTED: signal-regulatory protein beta-2-like [Mus musculus].
Length = 299
Score = 52.4 bits (124), Expect = 5e-07
Identities = 46/166 (27%), Positives = 70/166 (42%), Gaps = 7/166 (4%)
Frame = +1
Query: 55 VLLIGLLAVGSGVDSQTVIQEPAMSVSPGGTVTLTCAFTSGSVTTSNYPSWFQQTPGQPP 234
+LL+GL +G++ + + E ++SV GG+ TL C T S+ WF+ +
Sbjct: 18 ILLLGLKGA-AGIELKVIQPEKSVSVRAGGSATLNCTVT--SLLPVGPMRWFRGVGHR-- 72
Query: 235 RQLIYSTNNRPTGVPSRFSGAISGNKA--ALTITGAQAEDEADYFCRLYKSGDNIP---- 396
R LIYS + S A N ++ I+ D Y+C ++ G + P
Sbjct: 73 RNLIYSYTGEHLPRITNLSDATKRNNLDFSIRISNVTFADAGTYYCVKFQKGSSEPDTEI 132
Query: 397 -FGGGTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYP 531
GGGT L VLG + V S ATL C ++ P
Sbjct: 133 QSGGGTELIVLGAAEKELKVIQPEKSVSVRAGGSATLNCTVTSLIP 178
>ref|NP_001002898.1| signal-regulatory protein beta 1 [Mus musculus].
Length = 391
Score = 50.8 bits (120), Expect = 1e-06
Identities = 52/204 (25%), Positives = 84/204 (41%), Gaps = 15/204 (7%)
Frame = +1
Query: 46 AWT------VLLIGLLAVGSGVDSQTVIQEPAMS--VSPGGTVTLTCAFTSGSVTTSNYP 201
AWT +LLI LL + + +P S V GG+ TL C T S+
Sbjct: 6 AWTHIPHSVLLLILLLGFKGAAVRELKVIQPVKSFFVGAGGSATLNCTVT--SLLPVGPI 63
Query: 202 SWFQQTPGQPPRQLIYSTNNRPTGVPSRFSGAISGNKA--ALTITGAQAEDEADYFCRLY 375
W++ GQ R LIY + + S N ++ I+ D Y+C +
Sbjct: 64 RWYRGV-GQ-SRLLIYPFTGEHSPRITNVSDVTKRNNMDFSIRISNVTPADSGTYYCVKF 121
Query: 376 KSGDNIP-----FGGGTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAV 540
+ G + P GGGT L VL +P ++P V+ P++ + T C F+P +
Sbjct: 122 QRGSSEPDIEIQSGGGTELLVLAKP-SSPMVS--GPAARAVPQQTVTFTCRSHGFFPRNL 178
Query: 541 TVTWKAGSTTVTQGVETTKPSKQS 612
T+ W ++ + +P + S
Sbjct: 179 TLKWFKNGDEISHLETSVEPEETS 202
>ref|NP_001166931.1| signal-regulatory protein beta 1B [Mus musculus].
Length = 391
Score = 49.7 bits (117), Expect = 3e-06
Identities = 52/204 (25%), Positives = 85/204 (41%), Gaps = 15/204 (7%)
Frame = +1
Query: 46 AWT------VLLIGLLAVGSGVDSQTVIQEPAMS--VSPGGTVTLTCAFTSGSVTTSNYP 201
AWT +LLI LL + + + +P S V GG+ TL C T S+
Sbjct: 6 AWTHIPHSVLLLILLLGLKGAAMRELKVIQPVKSFFVGAGGSATLNCTVT--SLLPVGPI 63
Query: 202 SWFQQTPGQPPRQLIYSTNNRPTGVPSRFSGAISGNKA--ALTITGAQAEDEADYFCRLY 375
W++ GQ R LI S + S N ++ I+ D Y+C +
Sbjct: 64 RWYRGV-GQ-SRLLIQSFTGEHFPRITSVSDVTKRNNLDFSIRISNVTPADSGTYYCVKF 121
Query: 376 KSGDN-----IPFGGGTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAV 540
+ G + I GGGT L+VL +P ++P V+ P++ + T C F+P +
Sbjct: 122 QRGSSESDREIQSGGGTELSVLAKP-SSPMVS--GPAARAVPKQTVTFTCRSHGFFPRNL 178
Query: 541 TVTWKAGSTTVTQGVETTKPSKQS 612
T+ W ++ + +P + S
Sbjct: 179 TLKWFKNGNEISHLETSVEPEETS 202
>ref|NP_001166930.1| signal-regulatory protein beta 1-like [Mus musculus].
Length = 391
Score = 48.9 bits (115), Expect = 5e-06
Identities = 52/204 (25%), Positives = 84/204 (41%), Gaps = 15/204 (7%)
Frame = +1
Query: 46 AWT------VLLIGLLAVGSGVDSQTVIQEPAMS--VSPGGTVTLTCAFTSGSVTTSNYP 201
AWT +LLI LL + + + +P S V GG+ TL C T S+
Sbjct: 6 AWTHIPHCVLLLILLLGLKGAAMRELKVIQPVKSFFVGAGGSATLNCTVT--SLLPVGPI 63
Query: 202 SWFQQTPGQPPRQLIYSTNNRPTGVPSRFSGAI--SGNKAALTITGAQAEDEADYFCRLY 375
WF+ GQ R LIYS + S S ++ I+ D Y+C +
Sbjct: 64 RWFKGV-GQ-SRLLIYSFTGERFPRITNVSDVTKRSNLDFSIRISNVTPADSGTYYCVKF 121
Query: 376 KSGDNIP-----FGGGTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAV 540
+ G + P GGGT L+V +P ++P V+ P++ + C F+P +
Sbjct: 122 QRGPSEPDMEIQSGGGTELSVFAKP-SSPMVS--GPAARAVPQQTVAFTCRSHGFFPRNL 178
Query: 541 TVTWKAGSTTVTQGVETTKPSKQS 612
T+ W ++ + +P + S
Sbjct: 179 TLKWFKNGNEISHLETSVEPEETS 202
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.313 0.129 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,953,117
Number of extensions: 917243
Number of successful extensions: 5085
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 5026
Number of HSP's successfully gapped: 9
Length of query: 297
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 196
Effective length of database: 12,583,923
Effective search space: 2466448908
Effective search space used: 2466448908
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001471
(893 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230248.1| immunoglobulin lambda-like polypeptide 5 [Su... 414 e-116
Alignment gi|XP_003359207.1| PREDICTED: immunoglobulin lambda-like polype... 302 2e-82
Alignment gi|XP_003359211.1| PREDICTED: hypothetical protein LOC100622797... 223 1e-58
Alignment gi|XP_003133034.1| PREDICTED: immunoglobulin lambda-like polype... 188 4e-48
Alignment gi|XP_003359212.1| PREDICTED: ig lambda chain V-III region SH-l... 111 5e-25
Alignment gi|XP_003359213.1| PREDICTED: hypothetical protein LOC100623670... 110 8e-25
Alignment gi|XP_003354780.1| PREDICTED: ig kappa chain V-II region RPMI 6... 80 2e-15
Alignment gi|XP_003354777.1| PREDICTED: ig kappa chain V-I region HK102-l... 78 8e-15
Alignment gi|XP_003354776.1| PREDICTED: ig kappa chain V-I region HK102-l... 77 2e-14
Alignment gi|XP_001925619.2| PREDICTED: immunoglobulin iota chain-like [S... 75 5e-14
>ref|NP_001230248.1| immunoglobulin lambda-like polypeptide 5 [Sus scrofa].
Length = 234
Score = 414 bits (1063), Expect = e-116
Identities = 204/234 (87%), Positives = 211/234 (90%)
Frame = +1
Query: 43 MAWTVLLIGLLAVGSGVDSQTVIQEPAMSVSPGGTVTLTCAFTSGSVTTSNYPSWFQQTP 222
MAWTVLLIGLLAVGSGVDSQTVIQEPAMSVS GGTVTLTCAF+SGSVT+S+YP WFQQTP
Sbjct: 1 MAWTVLLIGLLAVGSGVDSQTVIQEPAMSVSLGGTVTLTCAFSSGSVTSSDYPGWFQQTP 60
Query: 223 GQPPRQLIYSTNNRPTGVPSRFSGAISGNKAALTITGAQAEDEADYFCRLYKSGDNIPFG 402
GQPPR +IYSTN+RPTGVPSRFSGAISGNKA LTITGAQAEDEADYFC L KSG + FG
Sbjct: 61 GQPPRTVIYSTNSRPTGVPSRFSGAISGNKATLTITGAQAEDEADYFCALRKSGGTVTFG 120
Query: 403 GGTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVTQG 582
GGTH+TVLGQPKA PTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAG TTVTQG
Sbjct: 121 GGTHVTVLGQPKAAPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGGTTVTQG 180
Query: 583 VETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 744
VETTKPSKQSNNK DWKSSSGFTCQVTHEGTIVEKTVTPSECA
Sbjct: 181 VETTKPSKQSNNKYAASSYLALSASDWKSSSGFTCQVTHEGTIVEKTVTPSECA 234
>ref|XP_003359207.1| PREDICTED: immunoglobulin lambda-like polypeptide 5-like [Sus
scrofa].
Length = 233
Score = 302 bits (773), Expect = 2e-82
Identities = 158/236 (66%), Positives = 176/236 (74%), Gaps = 2/236 (0%)
Frame = +1
Query: 43 MAWTVLLIGLLAVGSG-VDSQTVIQEPAMSVSPGGTVTLTCAFTSGSVTTSNYPSWFQQT 219
MAWT LL+ LL++ +G V S + Q P +SVS GGT ++TC G S Y W++Q
Sbjct: 1 MAWTPLLLPLLSLCTGYVASSQLTQPPGVSVSLGGTASITC---QGGNFGSYYAHWYKQK 57
Query: 220 PGQPPRQLIYSTNNRPTGVPSRFSGAISGNKAALTITGAQAEDEADYFCRLYKSGDNIP- 396
PGQ P +IY N R +G+P RFSG+ SGN A LTI+GAQAEDEADY+C+ D P
Sbjct: 58 PGQSPMLVIYEYNKRASGIPDRFSGSKSGNTATLTISGAQAEDEADYYCQSSDDSDAGPL 117
Query: 397 FGGGTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTTVT 576
FG GT L+VL QPKA PTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAG TTVT
Sbjct: 118 FGRGTRLSVLRQPKAAPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGGTTVT 177
Query: 577 QGVETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 744
QGVETTKPSKQSNNK DWKSSSGFTCQVTHEGTIVEKTVTPSECA
Sbjct: 178 QGVETTKPSKQSNNKYAASSYLALSASDWKSSSGFTCQVTHEGTIVEKTVTPSECA 233
>ref|XP_003359211.1| PREDICTED: hypothetical protein LOC100622797 [Sus scrofa].
Length = 484
Score = 223 bits (567), Expect = 1e-58
Identities = 109/116 (93%), Positives = 113/116 (97%)
Frame = +1
Query: 31 SVPTMAWTVLLIGLLAVGSGVDSQTVIQEPAMSVSPGGTVTLTCAFTSGSVTTSNYPSWF 210
SVPTMAWTVLLIGLLAVGSGVDSQTVIQEPAMSVS GGTVTLTCAF+SGSVT+SNYPSW+
Sbjct: 26 SVPTMAWTVLLIGLLAVGSGVDSQTVIQEPAMSVSLGGTVTLTCAFSSGSVTSSNYPSWY 85
Query: 211 QQTPGQPPRQLIYSTNNRPTGVPSRFSGAISGNKAALTITGAQAEDEADYFCRLYK 378
QQTPGQPPRQLIYSTN+RPTGVPSRFSGAISGNKA LTITGAQAEDEADYFC LYK
Sbjct: 86 QQTPGQPPRQLIYSTNSRPTGVPSRFSGAISGNKATLTITGAQAEDEADYFCALYK 141
Score = 88.6 bits (218), Expect = 4e-18
Identities = 60/160 (37%), Positives = 85/160 (53%), Gaps = 1/160 (0%)
Frame = +1
Query: 43 MAWTVLLIGLLAVGSGVDSQTVI-QEPAMSVSPGGTVTLTCAFTSGSVTTSNYPSWFQQT 219
+AW+ LL+ LLA +G +Q V+ Q P+ S S G VTL+C +S ++ N +W Q
Sbjct: 203 VAWSPLLLTLLAHCTGSWAQAVLTQPPSESGSLGQRVTLSCTGSSSNIGGGNSVNWSQPL 262
Query: 220 PGQPPRQLIYSTNNRPTGVPSRFSGAISGNKAALTITGAQAEDEADYFCRLYKSGDNIPF 399
PG+ PR + N P +FSG SG+ LTITG QAED+A+Y+C GD++
Sbjct: 263 PGKVPRSVFTYANLMAIAAPDQFSGFKSGSSGTLTITGLQAEDDAEYYCT--AGGDSL-- 318
Query: 400 GGGTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLIS 519
G T GQ + P V P LG ++C+IS
Sbjct: 319 DGPTVPQARGQVRPKPAV---PQPGGSLG---RAILCIIS 352
>ref|XP_003133034.1| PREDICTED: immunoglobulin lambda-like polypeptide 5-like [Sus
scrofa].
Length = 211
Score = 188 bits (477), Expect = 4e-48
Identities = 90/118 (76%), Positives = 96/118 (81%)
Frame = +1
Query: 391 IPFGGGTHLTVLGQPKATPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGSTT 570
+ FGGGT LTVLGQPKA PTV LFPPS EEL TNKATLVCLISDFYPGAVTVTWKAG TT
Sbjct: 94 VVFGGGTRLTVLGQPKAAPTVTLFPPSPEELSTNKATLVCLISDFYPGAVTVTWKAGGTT 153
Query: 571 VTQGVETTKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 744
+TQGV+T++PSKQSNNK DWKSSSGFTCQVTH+G VEKTV PSECA
Sbjct: 154 ITQGVDTSQPSKQSNNKYAASSYLALSASDWKSSSGFTCQVTHQGNTVEKTVMPSECA 211
>ref|XP_003359212.1| PREDICTED: ig lambda chain V-III region SH-like [Sus scrofa].
Length = 179
Score = 111 bits (278), Expect = 5e-25
Identities = 58/110 (52%), Positives = 74/110 (67%), Gaps = 1/110 (0%)
Frame = +1
Query: 43 MAWTVLLIGLLAVGSG-VDSQTVIQEPAMSVSPGGTVTLTCAFTSGSVTTSNYPSWFQQT 219
MAWT LL+ LL++ +G V S + Q P +SVS GGT ++ C G S Y W+QQ
Sbjct: 1 MAWTPLLLPLLSLCTGYVASSKLTQPPGVSVSLGGTASIAC---QGDNFGSYYAHWYQQK 57
Query: 220 PGQPPRQLIYSTNNRPTGVPSRFSGAISGNKAALTITGAQAEDEADYFCR 369
PGQ P +IY N R +G+P RFSG+ SGN A LTI+GAQAEDEADY+C+
Sbjct: 58 PGQSPMLVIYEYNKRASGIPDRFSGSKSGNTATLTISGAQAEDEADYYCQ 107
>ref|XP_003359213.1| PREDICTED: hypothetical protein LOC100623670 [Sus scrofa].
Length = 276
Score = 110 bits (276), Expect = 8e-25
Identities = 64/138 (46%), Positives = 82/138 (59%), Gaps = 3/138 (2%)
Frame = +1
Query: 43 MAWTVLLIGLLAVGSG-VDSQTVIQEPAMSVSPGGTVTLTCAFTSGSVTTSNYPSWFQQT 219
MAW LL+GLLA +G V S V Q P++SV+PG ++TC G+ W+QQ
Sbjct: 1 MAWIPLLLGLLAHCTGSVASYEVTQPPSVSVNPGQRASITC---EGNNIGRKDIQWYQQK 57
Query: 220 PGQPPRQLIYSTNNRPTGVPSRFSGAISGNKAALTITGAQAEDEADYFCRLYKSG--DNI 393
PGQ P IY NRP+G+P RFS + SGN A LTI+GAQAEDEADY+C+ Y +
Sbjct: 58 PGQAPVLFIYEDTNRPSGIPERFSASKSGNTATLTISGAQAEDEADYYCQSYDDSYTPHS 117
Query: 394 PFGGGTHLTVLGQPKATP 447
GGG G+P+ P
Sbjct: 118 DTGGG------GRPRFAP 129
Score = 68.9 bits (167), Expect = 3e-12
Identities = 32/50 (64%), Positives = 38/50 (76%)
Frame = +1
Query: 214 QTPGQPPRQLIYSTNNRPTGVPSRFSGAISGNKAALTITGAQAEDEADYF 363
Q PGQ P +IY + RP G+P RFSG+ SGN A LTI+GAQAEDEADY+
Sbjct: 145 QKPGQAPILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYY 194
>ref|XP_003354780.1| PREDICTED: ig kappa chain V-II region RPMI 6410-like [Sus scrofa].
Length = 194
Score = 80.1 bits (196), Expect = 2e-15
Identities = 46/116 (39%), Positives = 67/116 (57%), Gaps = 4/116 (3%)
Frame = +1
Query: 43 MAWTVLLIGLLAVGSGVDSQTVI--QEP-AMSVSPGGTVTLTCAFTSGSVTTS-NYPSWF 210
M + L+GLL + S ++ Q P ++SVSPG +++C + + S N+ SW+
Sbjct: 1 MRFPAQLLGLLLLWVPGSSGAIVLTQSPLSLSVSPGAPASISCRSSQSLESYSYNFLSWY 60
Query: 211 QQTPGQPPRQLIYSTNNRPTGVPSRFSGAISGNKAALTITGAQAEDEADYFCRLYK 378
QQ PGQ PR LIY N+ +GVP RFSG+ SG L I+ +AED Y+C+ K
Sbjct: 61 QQKPGQSPRLLIYFATNKASGVPDRFSGSGSGTDFTLKISRVEAEDAGVYYCQQNK 116
>ref|XP_003354777.1| PREDICTED: ig kappa chain V-I region HK102-like [Sus scrofa].
Length = 121
Score = 77.8 bits (190), Expect = 8e-15
Identities = 45/116 (38%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
Frame = +1
Query: 37 PTMAWTVLLIGLLAVGSGVDSQTVIQEPA-MSVSPGGTVTLTCAFTSGSVTTSNYPSWFQ 213
P ++LL+ L S + + Q PA ++ S G TV++TC S + + + +W+Q
Sbjct: 6 PMQLLSLLLLWLPGARSAIQ---LTQSPASLAASLGDTVSITCR---ASQSINKWLAWYQ 59
Query: 214 QTPGQPPRQLIYSTNNRPTGVPSRFSGAISGNKAALTITGAQAEDEADYFCRLYKS 381
Q G+ P+ LIYS + +GVPSRF G+ SG LTI+G QAED A Y+C+ + S
Sbjct: 60 QQAGKAPKLLIYSASTLQSGVPSRFKGSGSGTDFTLTISGLQAEDVATYYCQQHHS 115
>ref|XP_003354776.1| PREDICTED: ig kappa chain V-I region HK102-like [Sus scrofa].
Length = 121
Score = 76.6 bits (187), Expect = 2e-14
Identities = 45/116 (38%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Frame = +1
Query: 37 PTMAWTVLLIGLLAVGSGVDSQTVIQEPA-MSVSPGGTVTLTCAFTSGSVTTSNYPSWFQ 213
P +LL+ L S + + Q PA ++ S G TV++TC S + + + +W+Q
Sbjct: 6 PMQLLGLLLLWLPGARSAIQ---LTQSPASLAASLGDTVSITCR---ASQSINKWLAWYQ 59
Query: 214 QTPGQPPRQLIYSTNNRPTGVPSRFSGAISGNKAALTITGAQAEDEADYFCRLYKS 381
Q G+ P+ LIYS + +GVPSRF G+ SG LTI+G QAED A Y+C+ + S
Sbjct: 60 QQAGKAPKLLIYSASTLQSGVPSRFKGSGSGTDFTLTISGLQAEDVATYYCQQHHS 115
>ref|XP_001925619.2| PREDICTED: immunoglobulin iota chain-like [Sus scrofa].
Length = 159
Score = 75.1 bits (183), Expect = 5e-14
Identities = 50/120 (41%), Positives = 70/120 (58%), Gaps = 7/120 (5%)
Frame = +1
Query: 43 MAWTVLLIGLLAVGSGVDSQTVI-QEPAMSVSPGGTVTLTCAFTSGSVTTSNYPSWFQQT 219
MA T LLI L +G SQ V+ Q P++S SPG + L C +SGS S + SW+Q+
Sbjct: 1 MARTPLLIVRLCHCTGSLSQAVLTQPPSLSASPGPSARLPCTLSSGSSVGSYHISWYQRK 60
Query: 220 PGQPPRQLI----YSTNNRPTGVPSRFSG--AISGNKAALTITGAQAEDEADYFCRLYKS 381
PG+PP L+ S+ ++ +GVPS FSG S + L I+G Q ED+AD C ++S
Sbjct: 61 PGRPPWYLLRFHFASSKDQGSGVPSCFSGDKDASAHAGLLLISGLQPEDKADCDCLNWQS 120
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.313 0.129 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,695,640
Number of extensions: 754160
Number of successful extensions: 4134
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 4109
Number of HSP's successfully gapped: 21
Length of query: 297
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 199
Effective length of database: 8,904,026
Effective search space: 1771901174
Effective search space used: 1771901174
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001471
(893 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 839 0.0
>Sscrofa_Chr14
|| Length = 153851969
Score = 839 bits (423), Expect = 0.0
Identities = 442/447 (98%), Gaps = 1/447 (0%)
Strand = Plus / Plus
Query: 427 ggtcagcccaaggccactcccacggtcaacctcttcccgccctcctctgaggagctcggc 486
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52539635 ggtcagcccaaggccgctcccacggtcaacctcttcccgccctcctctgaggagctcggc 52539694
Query: 487 accaacaaggccaccctggtgtgtctaataagtgacttctacccgggcgccgtgacggtg 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52539695 accaacaaggccaccctggtgtgtctaataagtgacttctacccgggcgccgtgacggtg 52539754
Query: 547 acctggaaggcaggcagcaccaccgtcacccagggcgtggagaccaccaagccctcgaaa 606
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52539755 acctggaaggcaggcggcaccaccgtcacccagggcgtggagaccaccaagccctcgaaa 52539814
Query: 607 cagagcaacaacaagtacgcggccagcagctacctggccctgtccgccagtgactggaaa 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52539815 cagagcaacaacaagtacgcggccagcagctacctggccctgtccgccagtgactggaaa 52539874
Query: 667 tcttccagcggcttcacctgccaggtcacccacgaggggaccattgtggagaagacagtg 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52539875 tcttccagcggcttcacctgccaggtcacccacgaggggaccattgtggagaagacagtg 52539934
Query: 727 acgccctccgagtgcgcctaggtccctgggcccccaccctcaggggcctggagccacagg 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52539935 acgccctccgagtgcgcctaggtccctgggcccccaccctcaggggcctggagccacagg 52539994
Query: 787 acccccgcgagggtctccccgcgcccctggtccag-ccagcccctcctcctgcacctgtc 845
||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||
Sbjct: 52539995 acccccgcgagggtctccccgcgaccctggtccagcccagcccttcctcctgcacctgtc 52540054
Query: 846 aactcccaataaaccgtcctccttgtc 872
|||||||||||||||||||||||||||
Sbjct: 52540055 aactcccaataaaccgtcctccttgtc 52540081
Score = 821 bits (414), Expect = 0.0
Identities = 442/449 (98%), Gaps = 3/449 (0%)
Strand = Plus / Minus
Query: 427 ggtcagcccaaggccactcccacggtcaacctcttcccgccctcctctgaggagctcggc 486
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52423533 ggtcagcccaaggccgctcccacggtcaacctcttcccgccctcctctgaggagctcggc 52423474
Query: 487 accaacaaggccaccctggtgtgtctaataagtgacttctacccgggcgccgtgacggtg 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52423473 accaacaaggccaccctggtgtgtctaataagtgacttctacccgggcgccgtgacggtg 52423414
Query: 547 acctggaaggcaggcagcaccaccgtcacccagggcgtggagaccaccaagccctcgaaa 606
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52423413 acctggaaggcaggcggcaccaccgtcacccagggcgtggagaccaccaagccctcgaaa 52423354
Query: 607 cagagcaacaacaagtacgcggccagcagctacctggccctgtccgccagtgactggaaa 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52423353 cagagcaacaacaagtacgcggccagcagctacctggccctgtccgccagtgactggaaa 52423294
Query: 667 tcttccagcggcttcacctgccaggtcacccacgaggggaccattgtggagaagacagtg 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52423293 tcttccagcggcttcacctgccaggtcacccacgaggggaccattgtggagaagacagtg 52423234
Query: 727 acgccctccgagtgcgcctaggtccctgggcccccaccctcaggggcctggagccacagg 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52423233 acgccctccgagtgcgcctaggtccctgggcccccaccctcaggggcctggagccacagg 52423174
Query: 787 acccccgcgagggtct--ccccgcgcccctggtccag-ccagcccctcctcctgcacctg 843
|||||||||||||||| ||||||| ||||||||||| ||||||| ||||||||||||||
Sbjct: 52423173 acccccgcgagggtctccccccgcgaccctggtccagcccagcccttcctcctgcacctg 52423114
Query: 844 tcaactcccaataaaccgtcctccttgtc 872
|||||||||||||||||||||||||||||
Sbjct: 52423113 tcaactcccaataaaccgtcctccttgtc 52423085
Score = 785 bits (396), Expect = 0.0
Identities = 409/412 (99%), Gaps = 1/412 (0%)
Strand = Plus / Plus
Query: 427 ggtcagcccaaggccactcccacggtcaacctcttcccgccctcctctgaggagctcggc 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52542749 ggtcagcccaaggccactcccacggtcaacctcttcccgccctcctctgaggagctcggc 52542808
Query: 487 accaacaaggccaccctggtgtgtctaataagtgacttctacccgggcgccgtgacggtg 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52542809 accaacaaggccaccctggtgtgtctaataagtgacttctacccgggcgccgtgacggtg 52542868
Query: 547 acctggaaggcaggcagcaccaccgtcacccagggcgtggagaccaccaagccctcgaaa 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52542869 acctggaaggcaggcagcaccaccgtcacccagggcgtggagaccaccaagccctcgaaa 52542928
Query: 607 cagagcaacaacaagtacgcggccagcagctacctggccctgtccgccagtgactggaaa 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52542929 cagagcaacaacaagtacgcggccagcagctacctggccctgtccgccagtgactggaaa 52542988
Query: 667 tcttccagcggcttcacctgccaggtcacccacgaggggaccattgtggagaagacagtg 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52542989 tcttccagcggcttcacctgccaggtcacccacgaggggaccattgtggagaagacagtg 52543048
Query: 727 acgccctccgagtgcgcctaggtccctgggcccccaccctcaggggcctggagccacagg 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52543049 acgccctccgagtgcgcctaggtccctgggcccccaccctcaggggcctggagccacagg 52543108
Query: 787 acccccgcgagggtctccccgcgcccctggtccag-ccagcccctcctcctg 837
||||||||||||||||||||||| ||||||||||| ||||||| ||||||||
Sbjct: 52543109 acccccgcgagggtctccccgcgaccctggtccagcccagcccttcctcctg 52543160
Score = 634 bits (320), Expect = e-179
Identities = 418/450 (92%), Gaps = 8/450 (1%)
Strand = Plus / Minus
Query: 427 ggtcagcccaaggccactcccacggtcaacctcttcccgccctcctctgaggagctcggc 486
||||||||||||||| | ||||| |||| ||||||||||||||| ||||||||||| ||
Sbjct: 53394324 ggtcagcccaaggccgcccccacagtcacgctcttcccgccctcccctgaggagctcagc 53394265
Query: 487 accaacaaggccaccctggtgtgtctaataagtgacttctacccgggcgccgtgacggtg 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53394264 accaacaaggccaccctggtgtgtctaataagtgacttctacccgggcgccgtgacggtg 53394205
Query: 547 acctggaaggcaggcagcaccaccgtcacccagggcgtggagaccaccaagccctcgaaa 606
||||||||||||||| |||||||| |||||||||||||||| ||| || |||||||||||
Sbjct: 53394204 acctggaaggcaggcggcaccaccatcacccagggcgtggatacctcccagccctcgaaa 53394145
Query: 607 cagagcaacaacaagtacgcggccagcagctacctggccctgtccgccagtgactggaaa 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53394144 cagagcaacaacaagtacgcggccagcagctacctggccctgtccgccagtgactggaaa 53394085
Query: 667 tcttccagcggcttcacctgccaggtcacccacgaggggaccattgtggagaagacagtg 726
||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||
Sbjct: 53394084 tcttccagcggcttcacctgccaggtcacccaccaggggaacacagtggagaagacagtg 53394025
Query: 727 acgccctccgagtgcgcctaggtccctgggcccccaccctcaggggcctggagccacagg 786
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53394024 atgccctccgagtgcgcctaggtccctgggcccccaccctcaggggcctggagccacagg 53393965
Query: 787 acccccgcgagggtctcccc----gcgcccctggtccagccagcccctcctcctgcacct 842
|| |||| |||||||||||| | ||||||| ||||||| |||||||||||||
Sbjct: 53393964 actcccgtgagggtctccccctcaacaaccctggt----ccagcccttcctcctgcacct 53393909
Query: 843 gtcaactcccaataaaccgtcctccttgtc 872
||||||||||||||||| ||||||||||||
Sbjct: 53393908 gtcaactcccaataaactgtcctccttgtc 53393879
Score = 539 bits (272), Expect = e-151
Identities = 296/304 (97%)
Strand = Plus / Plus
Query: 87 aggggtggattctcagactgtgatccaggagccggcgatgtcagtgtctcctggagggac 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52274622 aggggtggattctcagactgtgatccaggagccggcgatgtcagtgtctcctggagggac 52274681
Query: 147 cgtcacactcacctgtgcctttacctctgggtcagtcactactagtaactaccccagctg 206
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 52274682 cgtcacactcacctgtgcctttagctctgggtcagtcactactagtaactaccccagctg 52274741
Query: 207 gttccagcagacaccaggccagcctccccgacagctgatctacagcacaaacaaccgccc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52274742 gttccagcagacaccaggccagcctccccgacagctgatctacagcacaaacaaccgccc 52274801
Query: 267 gactggggtccccagtcgcttctctggagccatctctgggaacaaagccgccctcaccat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52274802 gactggggtccccagtcgcttctctggagccatctctgggaacaaagccgccctcaccat 52274861
Query: 327 cacgggggcccaggctgaggacgaggccgactatttctgccgtctttataaaagtggtga 386
||||||||||||||||||||||||||||||||| ||||| ||| ||||||||| |||
Sbjct: 52274862 cacgggggcccaggctgaggacgaggccgactacttctgtgctctgtataaaagtagtgc 52274921
Query: 387 taat 390
||||
Sbjct: 52274922 taat 52274925
Score = 507 bits (256), Expect = e-141
Identities = 292/304 (96%)
Strand = Plus / Plus
Query: 87 aggggtggattctcagactgtgatccaggagccggcgatgtcagtgtctcctggagggac 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52287832 aggggtggattctcagactgtgatccaggagccggcgatgtcagtgtctcctggagggac 52287891
Query: 147 cgtcacactcacctgtgcctttacctctgggtcagtcactactagtaactaccccagctg 206
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 52287892 cgtcacactcacctgtgcctttagctctgggtcagtcactactagtaactaccccagctg 52287951
Query: 207 gttccagcagacaccaggccagcctccccgacagctgatctacagcacaaacaaccgccc 266
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 52287952 gttccagcagacaccaggccagcctccccgactgctgatctacagaacaaacaaccgccc 52288011
Query: 267 gactggggtccccagtcgcttctctggagccatctctgggaacaaagccgccctcaccat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52288012 gactggggtccccagtcgcttctctggagccatctctgggaacaaagccgccctcaccat 52288071
Query: 327 cacgggggcccaggctgaggacgaggccgactatttctgccgtctttataaaagtggtga 386
|||||||||||||||| | |||||||||||||| ||||| ||| ||||||||| |||
Sbjct: 52288072 cacgggggcccaggctaatgacgaggccgactacttctgtactctgtataaaagtagtgc 52288131
Query: 387 taat 390
||||
Sbjct: 52288132 taat 52288135
Score = 505 bits (255), Expect = e-140
Identities = 273/279 (97%)
Strand = Plus / Plus
Query: 87 aggggtggattctcagactgtgatccaggagccggcgatgtcagtgtctcctggagggac 146
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 52117514 aggggtggattctcagactgtgatccaggagccggcgatgtcagtgtctcttggagggac 52117573
Query: 147 cgtcacactcacctgtgcctttacctctgggtcagtcactactagtaactaccccagctg 206
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 52117574 cgtcacactcacctgtgcctttagctctgggtcagtcactagtagtaactaccccagctg 52117633
Query: 207 gttccagcagacaccaggccagcctccccgacagctgatctacagcacaaacaaccgccc 266
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 52117634 gtaccagcagacaccaggccagcctccccgacagctgatctacagcacaaacagccgccc 52117693
Query: 267 gactggggtccccagtcgcttctctggagccatctctgggaacaaagccgccctcaccat 326
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 52117694 gactggggtccccagtcgcttctctggagccatctctgggaacaaagccaccctcaccat 52117753
Query: 327 cacgggggcccaggctgaggacgaggccgactatttctg 365
|||||||||||||||||||||||||||||||||||||||
Sbjct: 52117754 cacgggggcccaggctgaggacgaggccgactatttctg 52117792
Score = 505 bits (255), Expect = e-140
Identities = 273/279 (97%)
Strand = Plus / Plus
Query: 87 aggggtggattctcagactgtgatccaggagccggcgatgtcagtgtctcctggagggac 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52134698 aggggtggattctcagactgtgatccaggagccggcgatgtcagtgtctcctggagggac 52134757
Query: 147 cgtcacactcacctgtgcctttacctctgggtcagtcactactagtaactaccccagctg 206
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 52134758 cgtcacactcacctgtgcctttagctctgggtcagtcactactagtaactaccccagctg 52134817
Query: 207 gttccagcagacaccaggccagcctccccgacagctgatctacagcacaaacaaccgccc 266
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 52134818 gttccagcagacaccaggccagcctccccgacagctgatctaccaaacaaacagccgccc 52134877
Query: 267 gactggggtccccagtcgcttctctggagccatctctgggaacaaagccgccctcaccat 326
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 52134878 gactggggtccccagtcgcttctctggagccatctctgggaacaaagccaccctcaccat 52134937
Query: 327 cacgggggcccaggctgaggacgaggccgactatttctg 365
|||||||||||||||||||||||||||||||||||||||
Sbjct: 52134938 cacgggggcccaggctgaggacgaggccgactatttctg 52134976
Score = 490 bits (247), Expect = e-136
Identities = 271/279 (97%)
Strand = Plus / Plus
Query: 87 aggggtggattctcagactgtgatccaggagccggcgatgtcagtgtctcctggagggac 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52205468 aggggtggattctcagactgtgatccaggagccggcgatgtcagtgtctcctggagggac 52205527
Query: 147 cgtcacactcacctgtgcctttacctctgggtcagtcactactagtaactaccccagctg 206
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 52205528 cgtcacactcacctgtgcctttagctctgggtcagtcactactagtaactaccccggctg 52205587
Query: 207 gttccagcagacaccaggccagcctccccgacagctgatctacagcacaaacaaccgccc 266
|| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 52205588 gtaccagcagacaccaggccagcctccccgacagctgatctaccaaacaaacagccgccc 52205647
Query: 267 gactggggtccccagtcgcttctctggagccatctctgggaacaaagccgccctcaccat 326
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 52205648 gactggggtccccagtcgcttctctggagccatctctgggaacaaagccaccctcaccat 52205707
Query: 327 cacgggggcccaggctgaggacgaggccgactatttctg 365
|||||||||||||||||||||||||||||||||||||||
Sbjct: 52205708 cacgggggcccaggctgaggacgaggccgactatttctg 52205746
Score = 490 bits (247), Expect = e-136
Identities = 271/279 (97%)
Strand = Plus / Plus
Query: 87 aggggtggattctcagactgtgatccaggagccggcgatgtcagtgtctcctggagggac 146
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 52259105 aggggtggattctcagactgtgatccaggagccggcgatgtcagtgtctcttggagggac 52259164
Query: 147 cgtcacactcacctgtgcctttacctctgggtcagtcactactagtaactaccccagctg 206
||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||
Sbjct: 52259165 cgtcacactcacctgtgcctttagctctgggtcagtcactagtagtaactacccaagctg 52259224
Query: 207 gttccagcagacaccaggccagcctccccgacagctgatctacagcacaaacaaccgccc 266
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 52259225 gtaccagcagacaccaggccagcctccccgacagctgatctacagcacaaacagccgccc 52259284
Query: 267 gactggggtccccagtcgcttctctggagccatctctgggaacaaagccgccctcaccat 326
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 52259285 gactggggtccccagtcgcttctctggagccatctctgggaacaaagccaccctcaccat 52259344
Query: 327 cacgggggcccaggctgaggacgaggccgactatttctg 365
||||||||||||||||||||||||||||||||| |||||
Sbjct: 52259345 cacgggggcccaggctgaggacgaggccgactacttctg 52259383
Score = 442 bits (223), Expect = e-121
Identities = 265/279 (94%)
Strand = Plus / Plus
Query: 87 aggggtggattctcagactgtgatccaggagccggcgatgtcagtgtctcctggagggac 146
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 52246118 aggggtggattctcagactgtgatccaggagccggcgatgtcagtgtctcttggagggac 52246177
Query: 147 cgtcacactcacctgtgcctttacctctgggtcagtcactactagtaactaccccagctg 206
||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||
Sbjct: 52246178 cgtcacactcacctgtgcctttagctctgggtcagtcactagtagtaactaccctggctg 52246237
Query: 207 gttccagcagacaccaggccagcctccccgacagctgatctacagcacaaacaaccgccc 266
||||||||||||||||||||||||||| ||| | |||||||||||||||| ||||||
Sbjct: 52246238 gttccagcagacaccaggccagcctcctcgaactgttatctacagcacaaacagccgccc 52246297
Query: 267 gactggggtccccagtcgcttctctggagccatctctgggaacaaagccgccctcaccat 326
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 52246298 gactggggtccccagtcgcttctctggagccatctctgggaacaaagccaccctcaccat 52246357
Query: 327 cacgggggcccaggctgaggacgaggccgactatttctg 365
||||||||||||||||||||||||||||||||| |||||
Sbjct: 52246358 cacgggggcccaggctgaggacgaggccgactacttctg 52246396
Score = 410 bits (207), Expect = e-112
Identities = 261/279 (93%)
Strand = Plus / Plus
Query: 87 aggggtggattctcagactgtgatccaggagccggcgatgtcagtgtctcctggagggac 146
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 52229039 aggggtggattctcagactgtgatccaggagccggcgatgtcagtgtctcttggagggac 52229098
Query: 147 cgtcacactcacctgtgcctttacctctgggtcagtcactactagtaactaccccagctg 206
||||||||||||||||||||||| ||||||||||||||||| ||||||| |||| ||||
Sbjct: 52229099 cgtcacactcacctgtgcctttagctctgggtcagtcactagtagtaacaaccctggctg 52229158
Query: 207 gttccagcagacaccaggccagcctccccgacagctgatctacagcacaaacaaccgccc 266
||||||||||||||||||||||||||| ||| | ||||| ||||||||||||||
Sbjct: 52229159 gttccagcagacaccaggccagcctcctcgaactgttatctatcaaacaaacaaccgccc 52229218
Query: 267 gactggggtccccagtcgcttctctggagccatctctgggaacaaagccgccctcaccat 326
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 52229219 gactggggtccccagtcgcttctctggagccatctctgggaacaaagccaccctcaccat 52229278
Query: 327 cacgggggcccaggctgaggacgaggccgactatttctg 365
||||||||||||||||||||||||||||||||| |||||
Sbjct: 52229279 cacgggggcccaggctgaggacgaggccgactacttctg 52229317
Score = 174 bits (88), Expect = 5e-41
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 2 ccaggaggctgaggaggccgcgtcccaggagtgtccccaccatggcctggacggtgcttc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52117331 ccaggaggctgaggaggccgcgtcccaggagtgtccccaccatggcctggacggtgcttc 52117390
Query: 62 tgatcgggctcctcgctgtcggctcagg 89
||||||||||||||||||||||||||||
Sbjct: 52117391 tgatcgggctcctcgctgtcggctcagg 52117418
Score = 174 bits (88), Expect = 5e-41
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 2 ccaggaggctgaggaggccgcgtcccaggagtgtccccaccatggcctggacggtgcttc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52228857 ccaggaggctgaggaggccgcgtcccaggagtgtccccaccatggcctggacggtgcttc 52228916
Query: 62 tgatcgggctcctcgctgtcggctcagg 89
||||||||||||||||||||||||||||
Sbjct: 52228917 tgatcgggctcctcgctgtcggctcagg 52228944
Score = 174 bits (88), Expect = 5e-41
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 2 ccaggaggctgaggaggccgcgtcccaggagtgtccccaccatggcctggacggtgcttc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52245936 ccaggaggctgaggaggccgcgtcccaggagtgtccccaccatggcctggacggtgcttc 52245995
Query: 62 tgatcgggctcctcgctgtcggctcagg 89
||||||||||||||||||||||||||||
Sbjct: 52245996 tgatcgggctcctcgctgtcggctcagg 52246023
Score = 174 bits (88), Expect = 5e-41
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 2 ccaggaggctgaggaggccgcgtcccaggagtgtccccaccatggcctggacggtgcttc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52258923 ccaggaggctgaggaggccgcgtcccaggagtgtccccaccatggcctggacggtgcttc 52258982
Query: 62 tgatcgggctcctcgctgtcggctcagg 89
||||||||||||||||||||||||||||
Sbjct: 52258983 tgatcgggctcctcgctgtcggctcagg 52259010
Score = 174 bits (88), Expect = 5e-41
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 2 ccaggaggctgaggaggccgcgtcccaggagtgtccccaccatggcctggacggtgcttc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52274440 ccaggaggctgaggaggccgcgtcccaggagtgtccccaccatggcctggacggtgcttc 52274499
Query: 62 tgatcgggctcctcgctgtcggctcagg 89
||||||||||||||||||||||||||||
Sbjct: 52274500 tgatcgggctcctcgctgtcggctcagg 52274527
Score = 174 bits (88), Expect = 5e-41
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 2 ccaggaggctgaggaggccgcgtcccaggagtgtccccaccatggcctggacggtgcttc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52287650 ccaggaggctgaggaggccgcgtcccaggagtgtccccaccatggcctggacggtgcttc 52287709
Query: 62 tgatcgggctcctcgctgtcggctcagg 89
||||||||||||||||||||||||||||
Sbjct: 52287710 tgatcgggctcctcgctgtcggctcagg 52287737
Score = 107 bits (54), Expect = 1e-20
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 2 ccaggaggctgaggaggccgcgtcccaggagtgtccccaccatggcctggacggtgcttc 61
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 52134517 ccaggaggctgaggaggccgcatcccaggagtgtccccaccatggcctagacggtgcttc 52134576
Query: 62 tg 63
||
Sbjct: 52134577 tg 52134578
Score = 107 bits (54), Expect = 1e-20
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 2 ccaggaggctgaggaggccgcgtcccaggagtgtccccaccatggcctggacggtgcttc 61
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 52205287 ccaggaggctgaggaggccgcatcccaggagtgtccccaccatggcctagacggtgcttc 52205346
Query: 62 tg 63
||
Sbjct: 52205347 tg 52205348
Score = 75.8 bits (38), Expect = 4e-11
Identities = 38/38 (100%)
Strand = Plus / Minus
Query: 392 ttcccttcggcggtgggacccatctgaccgtcctcggt 429
||||||||||||||||||||||||||||||||||||||
Sbjct: 52421755 ttcccttcggcggtgggacccatctgaccgtcctcggt 52421718
Score = 69.9 bits (35), Expect = 2e-09
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 317 ccctcaccatcacgggggcccaggctgaggacgaggccgacta 359
|||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 52398645 ccctgaccatcactggggcccaggctgaggacgaggccgacta 52398687
Score = 65.9 bits (33), Expect = 4e-08
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 397 ttcggcggtgggacccatctgaccgtcctcggt 429
|||||||||||||||||||||||||||||||||
Sbjct: 52424866 ttcggcggtgggacccatctgaccgtcctcggt 52424834
Score = 63.9 bits (32), Expect = 1e-07
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 312 agccgccctcaccatcacgggggcccaggctgaggacgaggccgacta 359
|||| |||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 52385190 agccaccctgaccatcagcggggcccaggctgaggacgaggccgacta 52385237
Score = 63.9 bits (32), Expect = 1e-07
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 304 gggaacaaagccgccctcaccatcacgggggcccaggctgaggacgaggccgacta 359
||||||| ||| |||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 52393166 gggaacaccgccaccctgaccatcagcggggcccaggctgaggacgaggccgacta 52393221
Score = 63.9 bits (32), Expect = 1e-07
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 304 gggaacaaagccgccctcaccatcacgggggcccaggctgaggacgaggccgacta 359
||||||| ||| |||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 52404739 gggaacaccgccaccctgaccatcagcggggcccaggctgaggacgaggccgacta 52404794
Score = 61.9 bits (31), Expect = 6e-07
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 317 ccctcaccatcacgggggcccaggctgaggacgaggccgacta 359
|||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 52405153 ccctgaccatcagcggggcccaggctgaggacgaggccgacta 52405195
Score = 60.0 bits (30), Expect = 2e-06
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 308 acaaagccgccctcaccatcacgggggcccaggctgaggacgaggccgactatt 361
|||||||||||||||||| ||||||||||| | ||||||||||||||||||
Sbjct: 52304134 acaaagccgccctcaccaggtcgggggcccagtccaaggacgaggccgactatt 52304187
Score = 58.0 bits (29), Expect = 9e-06
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 397 ttcggcggtgggacccatctgaccgtcctcggt 429
|||||||| ||||||||||||||||||||||||
Sbjct: 52541416 ttcggcggagggacccatctgaccgtcctcggt 52541448
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,873,028
Number of extensions: 197
Number of successful extensions: 197
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 31
Length of query: 893
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 872
Effective length of database: 2,808,413,156
Effective search space: 2448936272032
Effective search space used: 2448936272032
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)