Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001486
(1016 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001192331.1| transforming growth factor-beta-induced prot... 533 e-152
Alignment gi|NP_001035569.1| periostin [Bos taurus]. 304 7e-83
Alignment gi|NP_001193608.1| hyaluronan receptor for endocytosis-like [Bo... 53 5e-07
Alignment gi|NP_001192499.1| stabilin-1 [Bos taurus]. 52 8e-07
Alignment gi|XP_002697066.1| PREDICTED: stabilin-2-like [Bos taurus]. 52 8e-07
Alignment gi|XP_606270.3| PREDICTED: stabilin 2, partial [Bos taurus]. 49 9e-06
>ref|NP_001192331.1| transforming growth factor-beta-induced protein ig-h3 [Bos taurus].
Length = 683
Score = 533 bits (1374), Expect = e-152
Identities = 267/285 (93%), Positives = 272/285 (95%), Gaps = 3/285 (1%)
Frame = +3
Query: 171 KSPYQLVLQHSRLRGRQHGPNVCAVQKLIGTNKKYFTNCKQWYQRKICGKSTVISYECCP 350
+SPYQLVLQHSRLRGRQHGPNVCAVQKLIGTNKKYFTNCKQWYQRKICGKSTVISYECCP
Sbjct: 27 RSPYQLVLQHSRLRGRQHGPNVCAVQKLIGTNKKYFTNCKQWYQRKICGKSTVISYECCP 86
Query: 351 GYEKVPGEKGCPAALPLSNLYETLGVVGSTTTQLYTDRTEKLRPEMEGPGSFTIFAPSNE 530
GYEKVPGEKGCPAALPLSNLYETLGVVG+TTTQLYTDRTEKLRPEMEGPGSFTIFAPSNE
Sbjct: 87 GYEKVPGEKGCPAALPLSNLYETLGVVGATTTQLYTDRTEKLRPEMEGPGSFTIFAPSNE 146
Query: 531 AWASLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDELKHGMALTSMYQNSNIQIHHYP 710
AW+SLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDELKHGMALTSMYQNSNIQIHHYP
Sbjct: 147 AWSSLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDELKHGMALTSMYQNSNIQIHHYP 206
Query: 711 NGIVTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQQIIEIEDTFETLRAAVAASGLN 890
NGIVTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQQIIEIEDTFETLRAAVAASGLN
Sbjct: 207 NGIVTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQQIIEIEDTFETLRAAVAASGLN 266
Query: 891 TLLEGDGQYTLLAPTMRPSRRSLLRPET---DLGDPEALRDLLNN 1016
TLLEGDGQYTLLAPT + + ET LGDPEALRDLLNN
Sbjct: 267 TLLEGDGQYTLLAPTNEAFEK--IPAETLNRILGDPEALRDLLNN 309
Score = 64.7 bits (156), Expect = 1e-10
Identities = 43/121 (35%), Positives = 67/121 (55%)
Frame = +3
Query: 465 TEKLRPEMEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDE 644
TE L E G +T+FAP+NEA+ +LP L+ L+ N EL N L+YH+ D +++
Sbjct: 528 TETLNRE----GVYTVFAPTNEAFQALPRGELNKLMGNAK-ELANILKYHVGDEILVSGG 582
Query: 645 LKHGMALTSMYQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQ 824
+ + L S+ Q +++ N +V+VN + + D ATNGVVH I V+ N Q
Sbjct: 583 IGALVRLKSL-QGDKLEVSS-KNNVVSVNKEPVAEVDIMATNGVVHAISSVLQPPANRPQ 640
Query: 825 Q 827
+
Sbjct: 641 E 641
Score = 60.8 bits (146), Expect = 2e-09
Identities = 40/152 (26%), Positives = 86/152 (56%), Gaps = 3/152 (1%)
Frame = +3
Query: 486 MEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDELKHGMAL 665
+EG G +T+ AP+NEA+ +PAE L+ ++ + L + L H++ + + + G++L
Sbjct: 269 LEGDGQYTLLAPTNEAFEKIPAETLNRILGDPEA-LRDLLNNHILKSAMCAEAIVAGLSL 327
Query: 666 TSMYQNSNIQIHHYPNGIVTVNCARLLK-ADHHATNGVVHLIDKVISTVTNNIQQIIEI- 839
++ + + +++ ++T+N ++ D ATNGV+H ID+++ + ++ + + E+
Sbjct: 328 ETL-EGTTLEVG-CSGDMLTINGKPIISNKDVLATNGVIHFIDELL--IPDSAKTLFELA 383
Query: 840 -EDTFETLRAAVAASGLNTLLEGDGQYTLLAP 932
+ T +GL++ L G+ + TLLAP
Sbjct: 384 ADSDVSTAIDLFRQAGLSSHLSGNERLTLLAP 415
Score = 53.1 bits (126), Expect = 4e-07
Identities = 45/194 (23%), Positives = 86/194 (44%), Gaps = 2/194 (1%)
Frame = +3
Query: 435 STTTQLYTDRTEKLRPEMEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVNIELLNALRYH 614
ST L+ R L + G T+ AP N V +N N L H
Sbjct: 389 STAIDLF--RQAGLSSHLSGNERLTLLAPMNS--------VFKDGTPPINARTKNLLLNH 438
Query: 615 MVDRRVLTDELKHGMALTSMYQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDK 794
M+ ++ + L HG L ++ +++ Y N + N + D G + +D+
Sbjct: 439 MIKDQLASKYLYHGQTLDTL-GGRKLRVFVYRNSLCIENSC-IAAHDKRGRYGTLFTMDR 496
Query: 795 VISTVTNNIQQIIEIEDTFETLRAAVAASGLNTLLEGDGQYTLLAPTMRPSRRSLLRPET 974
+++ + +++ ++ F L AA+ ++GL L +G YT+ APT + ++L R E
Sbjct: 497 MLTPPMGTVMDVLKGDNRFSMLVAAIQSAGLTETLNREGVYTVFAPT-NEAFQALPRGEL 555
Query: 975 D--LGDPEALRDLL 1010
+ +G+ + L ++L
Sbjct: 556 NKLMGNAKELANIL 569
>ref|NP_001035569.1| periostin [Bos taurus].
Length = 779
Score = 304 bits (779), Expect = 7e-83
Identities = 140/252 (55%), Positives = 185/252 (73%)
Frame = +3
Query: 180 YQLVLQHSRLRGRQHGPNVCAVQKLIGTNKKYFTNCKQWYQRKICGKSTVISYECCPGYE 359
Y +L HSR+RGR GPNVCA+Q+++GT KKY + C+ WYQ ICGK T + YECCPGY
Sbjct: 25 YDKILAHSRIRGRDQGPNVCALQQILGTKKKYLSTCRNWYQGAICGKKTTVLYECCPGYM 84
Query: 360 KVPGEKGCPAALPLSNLYETLGVVGSTTTQLYTDRTEKLRPEMEGPGSFTIFAPSNEAWA 539
++ G KGCPA +P+ ++Y TLG+VG+TTTQ Y+D KLR E+EG GSFT FAPSNEAW
Sbjct: 85 RMEGMKGCPAVMPIDHVYGTLGIVGATTTQSYSD-VSKLREEIEGKGSFTYFAPSNEAWD 143
Query: 540 SLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDELKHGMALTSMYQNSNIQIHHYPNGI 719
+L +++ L SNVN+ELLNAL HMV++R+LT +LK+GM + SMY N + I+HYPNG+
Sbjct: 144 NLDSDIRRGLESNVNVELLNALHSHMVNKRMLTKDLKNGMIIPSMYNNLGLFINHYPNGV 203
Query: 720 VTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQQIIEIEDTFETLRAAVAASGLNTLL 899
VTVNCAR++ + ATNGVVH+ID+V++ + +IQ IE ED + RAA S + L
Sbjct: 204 VTVNCARIIHGNQIATNGVVHVIDRVLTQIGTSIQDFIEAEDELSSFRAAAITSDILETL 263
Query: 900 EGDGQYTLLAPT 935
DG +TL APT
Sbjct: 264 GRDGHFTLFAPT 275
Score = 72.4 bits (176), Expect = 6e-13
Identities = 51/147 (34%), Positives = 83/147 (56%), Gaps = 2/147 (1%)
Frame = +3
Query: 498 GSFTIFAPSNEAWASLPAEVLDSLVSN-VNIELLNALRYHMVDRRVLTDELKHGMALTSM 674
G FT+FAP+NEA+ LP VL+ ++ + V E L ++YH+++ ++ + G A+
Sbjct: 267 GHFTLFAPTNEAFEKLPRGVLERIMGDKVASEAL--MKYHILNTLQCSEAIMGG-AVFET 323
Query: 675 YQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQQIIEIEDTFE 854
+ + I+I + I + K D NGV+HLID+V+ V ++ +Q+IE+ +
Sbjct: 324 LEGNTIEIGCDGDSITVNGIKMVNKKDIVTNNGVIHLIDQVL--VPDSAKQVIELAGNQQ 381
Query: 855 -TLRAAVAASGLNTLLEGDGQYTLLAP 932
T VA GL + L DG+YTLLAP
Sbjct: 382 TTFTDLVAQLGLASALRPDGEYTLLAP 408
>ref|NP_001193608.1| hyaluronan receptor for endocytosis-like [Bos taurus].
Length = 2549
Score = 52.8 bits (125), Expect = 5e-07
Identities = 37/122 (30%), Positives = 67/122 (54%), Gaps = 1/122 (0%)
Frame = +3
Query: 441 TTQLYTDRTEKLRPEMEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVNIELLNALRYHMV 620
T+Q Y E ++ GPG FT+ AP + A+ P ++ D + ++L RYH++
Sbjct: 1608 TSQFYFQLLEHSVRDLVGPGPFTVLAPLSAAFDEEP-QIKDWDKGGLMPQIL---RYHVI 1663
Query: 621 D-RRVLTDELKHGMALTSMYQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKV 797
++L + LK TS+ Q ++ I + ++ N AR++ +D TNG++H+IDK+
Sbjct: 1664 ACHQLLLENLKLTPNATSL-QGESLVISVSQDMVLINNKARIISSDILCTNGIIHVIDKL 1722
Query: 798 IS 803
+S
Sbjct: 1723 LS 1724
Score = 48.5 bits (114), Expect = 9e-06
Identities = 41/158 (25%), Positives = 79/158 (50%), Gaps = 14/158 (8%)
Frame = +3
Query: 501 SFTIFAPSNEAWASLPAEVLDSLVSNVNIELLNALRYH-------MVDRRVLTDELKHGM 659
+ T+ PS +A A + E ++ NI +L ++YH + D + L+ M
Sbjct: 1027 NLTVLVPSRQAIADMDQEEKAFWLTKSNIPVL--IKYHTLLGTYGVADLQALSPS---DM 1081
Query: 660 ALTSMYQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVI-------STVTNN 818
TS+ Q + +Q+ +G +T+ A ++ D+ ATNGV+H+I+KV+ ++ N
Sbjct: 1082 LATSL-QGNFLQLVK-ADGNITIEGASVIDGDNAATNGVIHIINKVLIPQRGLTGSLPNL 1139
Query: 819 IQQIIEIEDTFETLRAAVAASGLNTLLEGDGQYTLLAP 932
+ ++ ++ D + + R + L T +E YT+ AP
Sbjct: 1140 LTRLDQMPD-YSSFRGYIIQYNLATAIEAADAYTVFAP 1176
>ref|NP_001192499.1| stabilin-1 [Bos taurus].
Length = 2568
Score = 52.0 bits (123), Expect = 8e-07
Identities = 42/140 (30%), Positives = 64/140 (45%), Gaps = 4/140 (2%)
Frame = +3
Query: 486 MEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDE--LKHGM 659
++GPG FT+FAPSNEA L L L + +L +RYH+ + LT E L G
Sbjct: 532 LDGPGPFTVFAPSNEAVDGLRDGRLVYLFTAGLSKLQELVRYHVYNHGQLTVEKLLSKGR 591
Query: 660 ALTSMYQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVI--STVTNNIQQII 833
LT Q + I ++ L + D A NGV+H+++ V+ T+ + ++
Sbjct: 592 VLTMANQILAVNISEEGRILLGPEGVPLRRVDVLAANGVIHMLEGVLLPPTILPILPKLC 651
Query: 834 EIEDTFETLRAAVAASGLNT 893
E + V LNT
Sbjct: 652 NEEQHAVVAGSCVDCQALNT 671
>ref|XP_002697066.1| PREDICTED: stabilin-2-like [Bos taurus].
Length = 2568
Score = 52.0 bits (123), Expect = 8e-07
Identities = 42/140 (30%), Positives = 64/140 (45%), Gaps = 4/140 (2%)
Frame = +3
Query: 486 MEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDE--LKHGM 659
++GPG FT+FAPSNEA L L L + +L +RYH+ + LT E L G
Sbjct: 532 LDGPGPFTVFAPSNEAVDGLRDGRLVYLFTAGLSKLQELVRYHVYNHGQLTVEKLLSKGR 591
Query: 660 ALTSMYQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVI--STVTNNIQQII 833
LT Q + I ++ L + D A NGV+H+++ V+ T+ + ++
Sbjct: 592 VLTMANQILAVNISEEGRILLGPEGVPLRRVDVLAANGVIHMLEGVLLPPTILPILPKLC 651
Query: 834 EIEDTFETLRAAVAASGLNT 893
E + V LNT
Sbjct: 652 NEEQHAVVAGSCVDCQALNT 671
>ref|XP_606270.3| PREDICTED: stabilin 2, partial [Bos taurus].
Length = 1280
Score = 48.5 bits (114), Expect = 9e-06
Identities = 41/158 (25%), Positives = 79/158 (50%), Gaps = 14/158 (8%)
Frame = +3
Query: 501 SFTIFAPSNEAWASLPAEVLDSLVSNVNIELLNALRYH-------MVDRRVLTDELKHGM 659
+ T+ PS +A A + E ++ NI +L ++YH + D + L+ M
Sbjct: 1027 NLTVLVPSRQAIADMDQEEKAFWLTKSNIPVL--IKYHTLLGTYGVADLQALSPS---DM 1081
Query: 660 ALTSMYQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVI-------STVTNN 818
TS+ Q + +Q+ +G +T+ A ++ D+ ATNGV+H+I+KV+ ++ N
Sbjct: 1082 LATSL-QGNFLQLVK-ADGNITIEGASVIDGDNAATNGVIHIINKVLIPQRGLTGSLPNL 1139
Query: 819 IQQIIEIEDTFETLRAAVAASGLNTLLEGDGQYTLLAP 932
+ ++ ++ D + + R + L T +E YT+ AP
Sbjct: 1140 LTRLDQMPD-YSSFRGYIIQYNLATAIEAADAYTVFAP 1176
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,729,143
Number of extensions: 976685
Number of successful extensions: 5543
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5486
Number of HSP's successfully gapped: 11
Length of query: 338
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 235
Effective length of database: 14,273,310
Effective search space: 3354227850
Effective search space used: 3354227850
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001486
(1016 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538640.2| PREDICTED: similar to Transforming growth facto... 492 e-139
Alignment gi|XP_856355.1| PREDICTED: similar to osteoblast specific facto... 304 1e-82
Alignment gi|XP_856272.1| PREDICTED: similar to Periostin precursor (PN) ... 304 1e-82
Alignment gi|XP_534490.2| PREDICTED: similar to Periostin precursor (PN) ... 304 1e-82
Alignment gi|XP_856313.1| PREDICTED: similar to Periostin precursor (PN) ... 298 6e-81
Alignment gi|XP_541851.2| PREDICTED: similar to Stabilin-1 precursor (FEE... 52 7e-07
>ref|XP_538640.2| PREDICTED: similar to Transforming growth factor-beta induced protein
IG-H3 precursor (Beta IG-H3) (Kerato-epithelin)
(RGD-containing collagen associated protein) (RGD-CAP)
[Canis familiaris].
Length = 661
Score = 492 bits (1266), Expect = e-139
Identities = 247/266 (92%), Positives = 252/266 (94%), Gaps = 3/266 (1%)
Frame = +3
Query: 228 PNVCAVQKLIGTNKKYFTNCKQWYQRKICGKSTVISYECCPGYEKVPGEKGCPAALPLSN 407
PNVCAVQKLIGTNKKYFTNCKQWYQRKICGKSTVISYECCPGYEKVPGEKGCPAALPLSN
Sbjct: 24 PNVCAVQKLIGTNKKYFTNCKQWYQRKICGKSTVISYECCPGYEKVPGEKGCPAALPLSN 83
Query: 408 LYETLGVVGSTTTQLYTDRTEKLRPEMEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVNI 587
LYETLGVVGSTTTQLYTDRTEKLRPEMEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVNI
Sbjct: 84 LYETLGVVGSTTTQLYTDRTEKLRPEMEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVNI 143
Query: 588 ELLNALRYHMVDRRVLTDELKHGMALTSMYQNSNIQIHHYPNGIVTVNCARLLKADHHAT 767
ELLNALRYHMV+RRVLTDELKHGMALTSMYQNS IQIHHYPNGIVTVNCARLLKADHHAT
Sbjct: 144 ELLNALRYHMVNRRVLTDELKHGMALTSMYQNSGIQIHHYPNGIVTVNCARLLKADHHAT 203
Query: 768 NGVVHLIDKVISTVTNNIQQIIEIEDTFETLRAAVAASGLNTLLEGDGQYTLLAPTMRPS 947
NGVVHLIDKVIST+TNNIQQIIEIEDTFETLRAAVAASGLNTLLEGDGQ+TLLAPT
Sbjct: 204 NGVVHLIDKVISTITNNIQQIIEIEDTFETLRAAVAASGLNTLLEGDGQFTLLAPTNEAF 263
Query: 948 RRSLLRPET---DLGDPEALRDLLNN 1016
+ + ET LGDPEALRDLLNN
Sbjct: 264 EK--IPAETLNRILGDPEALRDLLNN 287
Score = 62.0 bits (149), Expect = 9e-10
Identities = 41/151 (27%), Positives = 80/151 (52%), Gaps = 2/151 (1%)
Frame = +3
Query: 486 MEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDELKHGMAL 665
+EG G FT+ AP+NEA+ +PAE L+ ++ + L + L H++ + + + GM++
Sbjct: 247 LEGDGQFTLLAPTNEAFEKIPAETLNRILGDPEA-LRDLLNNHILKSAMCAEAIVAGMSV 305
Query: 666 TSMYQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQQIIEI-- 839
++ + + +++ + + A + D ATNGV+H ID+++ + ++ + + E+
Sbjct: 306 ETL-EGTTLEVGCSGDMLTINGKAIISNKDVLATNGVIHFIDELL--IPDSAKTLFELAA 362
Query: 840 EDTFETLRAAVAASGLNTLLEGDGQYTLLAP 932
E T +GL L G + TLLAP
Sbjct: 363 ESDVSTAVDLFRQAGLGVHLSGKERLTLLAP 393
Score = 58.5 bits (140), Expect = 1e-08
Identities = 39/112 (34%), Positives = 63/112 (56%)
Frame = +3
Query: 465 TEKLRPEMEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDE 644
TE L E G +T+FAP+NEA+ ++P L+ L+ N EL N L+YH+ D +++
Sbjct: 506 TEMLNRE----GVYTVFAPTNEAFQAMPPGELNKLLGNAK-ELANILKYHIGDEILVSGG 560
Query: 645 LKHGMALTSMYQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVI 800
+ + L S+ Q +++ N +V VN + + D ATNGVV+ I V+
Sbjct: 561 IGALVRLKSL-QGDKLEVSS-KNNVVNVNKEPVAEVDIMATNGVVYAISSVL 610
Score = 52.8 bits (125), Expect = 5e-07
Identities = 40/167 (23%), Positives = 76/167 (45%)
Frame = +3
Query: 435 STTTQLYTDRTEKLRPEMEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVNIELLNALRYH 614
ST L+ R L + G T+ AP N + +D+ N+ LLN H
Sbjct: 367 STAVDLF--RQAGLGVHLSGKERLTLLAPLNSVFKD-GTPTIDARTKNL---LLN----H 416
Query: 615 MVDRRVLTDELKHGMALTSMYQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDK 794
M+ ++ + L HG L ++ +++ Y N + N + D G + +D+
Sbjct: 417 MIKDQLASKYLYHGQTLDTL-GGKKLRVFVYRNSLCIENSC-IAAHDKRGRYGTLFTMDR 474
Query: 795 VISTVTNNIQQIIEIEDTFETLRAAVAASGLNTLLEGDGQYTLLAPT 935
+++ + +++ ++ F L AA+ ++GL +L +G YT+ APT
Sbjct: 475 MLTPPMGTVMDVLKGDNRFSMLVAAIQSAGLTEMLNREGVYTVFAPT 521
>ref|XP_856355.1| PREDICTED: similar to osteoblast specific factor 2 (fasciclin
I-like) isoform 4 [Canis familiaris].
Length = 779
Score = 304 bits (778), Expect = 1e-82
Identities = 140/252 (55%), Positives = 185/252 (73%)
Frame = +3
Query: 180 YQLVLQHSRLRGRQHGPNVCAVQKLIGTNKKYFTNCKQWYQRKICGKSTVISYECCPGYE 359
Y +L HSR+RGR GPNVCA+Q+++GT KKYF+ C+ WYQ ICG+ T + YECCPGY
Sbjct: 25 YDKILAHSRIRGRDQGPNVCALQQILGTKKKYFSTCRNWYQGAICGRKTTVLYECCPGYM 84
Query: 360 KVPGEKGCPAALPLSNLYETLGVVGSTTTQLYTDRTEKLRPEMEGPGSFTIFAPSNEAWA 539
++ G KGCPA LP+ ++Y TLG+VG+TTTQ Y+D +LR E+EG GSFT FAPSNEAW
Sbjct: 85 RMEGMKGCPAVLPIDHVYGTLGIVGATTTQRYSD-VSRLREEIEGKGSFTYFAPSNEAWD 143
Query: 540 SLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDELKHGMALTSMYQNSNIQIHHYPNGI 719
+L +++ L SNVN+ELLNAL HMV+ R+LT +LK+GM + SMY N + I+HYPNG+
Sbjct: 144 NLDSDIRRGLESNVNVELLNALHSHMVNNRMLTKDLKNGMIIPSMYNNLGLFINHYPNGV 203
Query: 720 VTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQQIIEIEDTFETLRAAVAASGLNTLL 899
VTVNCAR++ + ATNGVVH+ID+V++ + +IQ IE ED + RAA S + L
Sbjct: 204 VTVNCARIIHGNQIATNGVVHVIDRVLTQIGTSIQDFIEAEDDLSSFRAAAITSDILESL 263
Query: 900 EGDGQYTLLAPT 935
DG +TL APT
Sbjct: 264 GRDGHFTLFAPT 275
Score = 72.4 bits (176), Expect = 6e-13
Identities = 50/147 (34%), Positives = 83/147 (56%), Gaps = 2/147 (1%)
Frame = +3
Query: 498 GSFTIFAPSNEAWASLPAEVLDSLVSN-VNIELLNALRYHMVDRRVLTDELKHGMALTSM 674
G FT+FAP+NEA+ LP VL+ ++ + V E L ++YH+++ ++ + G A+
Sbjct: 267 GHFTLFAPTNEAFEKLPRGVLERIMGDKVASEAL--MKYHLLNTLQCSEAIMGG-AVFET 323
Query: 675 YQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQQIIEIEDTFE 854
+ + I+I + I + K D NGV+HLID+V+ + ++ +Q+IE+ +
Sbjct: 324 LEGNTIEIGCDGDSITVNGIKMVNKKDIVTNNGVIHLIDQVL--IPDSAKQVIELAGNQQ 381
Query: 855 -TLRAAVAASGLNTLLEGDGQYTLLAP 932
T VA GL + L DG+YTLLAP
Sbjct: 382 TTFTDLVAQLGLASALRPDGEYTLLAP 408
Score = 49.3 bits (116), Expect = 6e-06
Identities = 36/154 (23%), Positives = 71/154 (46%)
Frame = +3
Query: 474 LRPEMEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDELKH 653
LRP+ G +T+ AP N A++ D +S L L+ H++ +V +EL +
Sbjct: 397 LRPD----GEYTLLAPVNNAFS-------DDTLSMDQRLLKLILQNHILKVKVGLNELYN 445
Query: 654 GMALTSMYQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQQII 833
G L ++ +++ Y + N +++ NG +H+ ++I ++ + +
Sbjct: 446 GQKLETI-GGKQLRVFVYRTAVCIENSC-MVRGSKQGRNGAIHIFREIIKPAEKSLHEQL 503
Query: 834 EIEDTFETLRAAVAASGLNTLLEGDGQYTLLAPT 935
+ + F T + + A+ L LL G +TL PT
Sbjct: 504 KQDKRFSTFLSLLEAADLKELLTQPGDWTLFVPT 537
Score = 48.5 bits (114), Expect = 1e-05
Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 3/148 (2%)
Frame = +3
Query: 405 NLYETLGVVGSTTTQLYTDRTEKLRPEMEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVN 584
+L+E L +T L L+ + PG +T+F P+N+A+ + E + L+ + N
Sbjct: 498 SLHEQLKQDKRFSTFLSLLEAADLKELLTQPGDWTLFVPTNDAFKGMTNEEKEILIRDKN 557
Query: 585 IELLNALRYHMVDRRVLTDELKHGMA-LTSMYQNSNIQIHHYPNGIVTVNCARLLKADHH 761
L N + YH+ + + G+ + Q S I + N + VN + ++D
Sbjct: 558 A-LQNIILYHLTPGVFIGKGFEPGVTNILKTTQGSKIYLKGV-NDTLLVNEVKSKESDIM 615
Query: 762 ATNGVVHLIDKVISTVTNNI--QQIIEI 839
TNGV+H++DK++ + Q++EI
Sbjct: 616 TTNGVIHVVDKLLYPADTPVGNDQLLEI 643
>ref|XP_856272.1| PREDICTED: similar to Periostin precursor (PN) (Osteoblast-specific
factor 2) (OSF-2) isoform 2 [Canis familiaris].
Length = 809
Score = 304 bits (778), Expect = 1e-82
Identities = 140/252 (55%), Positives = 185/252 (73%)
Frame = +3
Query: 180 YQLVLQHSRLRGRQHGPNVCAVQKLIGTNKKYFTNCKQWYQRKICGKSTVISYECCPGYE 359
Y +L HSR+RGR GPNVCA+Q+++GT KKYF+ C+ WYQ ICG+ T + YECCPGY
Sbjct: 25 YDKILAHSRIRGRDQGPNVCALQQILGTKKKYFSTCRNWYQGAICGRKTTVLYECCPGYM 84
Query: 360 KVPGEKGCPAALPLSNLYETLGVVGSTTTQLYTDRTEKLRPEMEGPGSFTIFAPSNEAWA 539
++ G KGCPA LP+ ++Y TLG+VG+TTTQ Y+D +LR E+EG GSFT FAPSNEAW
Sbjct: 85 RMEGMKGCPAVLPIDHVYGTLGIVGATTTQRYSD-VSRLREEIEGKGSFTYFAPSNEAWD 143
Query: 540 SLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDELKHGMALTSMYQNSNIQIHHYPNGI 719
+L +++ L SNVN+ELLNAL HMV+ R+LT +LK+GM + SMY N + I+HYPNG+
Sbjct: 144 NLDSDIRRGLESNVNVELLNALHSHMVNNRMLTKDLKNGMIIPSMYNNLGLFINHYPNGV 203
Query: 720 VTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQQIIEIEDTFETLRAAVAASGLNTLL 899
VTVNCAR++ + ATNGVVH+ID+V++ + +IQ IE ED + RAA S + L
Sbjct: 204 VTVNCARIIHGNQIATNGVVHVIDRVLTQIGTSIQDFIEAEDDLSSFRAAAITSDILESL 263
Query: 900 EGDGQYTLLAPT 935
DG +TL APT
Sbjct: 264 GRDGHFTLFAPT 275
Score = 72.4 bits (176), Expect = 6e-13
Identities = 50/147 (34%), Positives = 83/147 (56%), Gaps = 2/147 (1%)
Frame = +3
Query: 498 GSFTIFAPSNEAWASLPAEVLDSLVSN-VNIELLNALRYHMVDRRVLTDELKHGMALTSM 674
G FT+FAP+NEA+ LP VL+ ++ + V E L ++YH+++ ++ + G A+
Sbjct: 267 GHFTLFAPTNEAFEKLPRGVLERIMGDKVASEAL--MKYHLLNTLQCSEAIMGG-AVFET 323
Query: 675 YQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQQIIEIEDTFE 854
+ + I+I + I + K D NGV+HLID+V+ + ++ +Q+IE+ +
Sbjct: 324 LEGNTIEIGCDGDSITVNGIKMVNKKDIVTNNGVIHLIDQVL--IPDSAKQVIELAGNQQ 381
Query: 855 -TLRAAVAASGLNTLLEGDGQYTLLAP 932
T VA GL + L DG+YTLLAP
Sbjct: 382 TTFTDLVAQLGLASALRPDGEYTLLAP 408
Score = 49.3 bits (116), Expect = 6e-06
Identities = 36/154 (23%), Positives = 71/154 (46%)
Frame = +3
Query: 474 LRPEMEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDELKH 653
LRP+ G +T+ AP N A++ D +S L L+ H++ +V +EL +
Sbjct: 397 LRPD----GEYTLLAPVNNAFS-------DDTLSMDQRLLKLILQNHILKVKVGLNELYN 445
Query: 654 GMALTSMYQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQQII 833
G L ++ +++ Y + N +++ NG +H+ ++I ++ + +
Sbjct: 446 GQKLETI-GGKQLRVFVYRTAVCIENSC-MVRGSKQGRNGAIHIFREIIKPAEKSLHEQL 503
Query: 834 EIEDTFETLRAAVAASGLNTLLEGDGQYTLLAPT 935
+ + F T + + A+ L LL G +TL PT
Sbjct: 504 KQDKRFSTFLSLLEAADLKELLTQPGDWTLFVPT 537
Score = 48.5 bits (114), Expect = 1e-05
Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 3/148 (2%)
Frame = +3
Query: 405 NLYETLGVVGSTTTQLYTDRTEKLRPEMEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVN 584
+L+E L +T L L+ + PG +T+F P+N+A+ + E + L+ + N
Sbjct: 498 SLHEQLKQDKRFSTFLSLLEAADLKELLTQPGDWTLFVPTNDAFKGMTNEEKEILIRDKN 557
Query: 585 IELLNALRYHMVDRRVLTDELKHGMA-LTSMYQNSNIQIHHYPNGIVTVNCARLLKADHH 761
L N + YH+ + + G+ + Q S I + N + VN + ++D
Sbjct: 558 A-LQNIILYHLTPGVFIGKGFEPGVTNILKTTQGSKIYLKGV-NDTLLVNEVKSKESDIM 615
Query: 762 ATNGVVHLIDKVISTVTNNI--QQIIEI 839
TNGV+H++DK++ + Q++EI
Sbjct: 616 TTNGVIHVVDKLLYPADTPVGNDQLLEI 643
>ref|XP_534490.2| PREDICTED: similar to Periostin precursor (PN) (Osteoblast-specific
factor 2) (OSF-2) isoform 1 [Canis familiaris].
Length = 836
Score = 304 bits (778), Expect = 1e-82
Identities = 140/252 (55%), Positives = 185/252 (73%)
Frame = +3
Query: 180 YQLVLQHSRLRGRQHGPNVCAVQKLIGTNKKYFTNCKQWYQRKICGKSTVISYECCPGYE 359
Y +L HSR+RGR GPNVCA+Q+++GT KKYF+ C+ WYQ ICG+ T + YECCPGY
Sbjct: 25 YDKILAHSRIRGRDQGPNVCALQQILGTKKKYFSTCRNWYQGAICGRKTTVLYECCPGYM 84
Query: 360 KVPGEKGCPAALPLSNLYETLGVVGSTTTQLYTDRTEKLRPEMEGPGSFTIFAPSNEAWA 539
++ G KGCPA LP+ ++Y TLG+VG+TTTQ Y+D +LR E+EG GSFT FAPSNEAW
Sbjct: 85 RMEGMKGCPAVLPIDHVYGTLGIVGATTTQRYSD-VSRLREEIEGKGSFTYFAPSNEAWD 143
Query: 540 SLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDELKHGMALTSMYQNSNIQIHHYPNGI 719
+L +++ L SNVN+ELLNAL HMV+ R+LT +LK+GM + SMY N + I+HYPNG+
Sbjct: 144 NLDSDIRRGLESNVNVELLNALHSHMVNNRMLTKDLKNGMIIPSMYNNLGLFINHYPNGV 203
Query: 720 VTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQQIIEIEDTFETLRAAVAASGLNTLL 899
VTVNCAR++ + ATNGVVH+ID+V++ + +IQ IE ED + RAA S + L
Sbjct: 204 VTVNCARIIHGNQIATNGVVHVIDRVLTQIGTSIQDFIEAEDDLSSFRAAAITSDILESL 263
Query: 900 EGDGQYTLLAPT 935
DG +TL APT
Sbjct: 264 GRDGHFTLFAPT 275
Score = 72.4 bits (176), Expect = 6e-13
Identities = 50/147 (34%), Positives = 83/147 (56%), Gaps = 2/147 (1%)
Frame = +3
Query: 498 GSFTIFAPSNEAWASLPAEVLDSLVSN-VNIELLNALRYHMVDRRVLTDELKHGMALTSM 674
G FT+FAP+NEA+ LP VL+ ++ + V E L ++YH+++ ++ + G A+
Sbjct: 267 GHFTLFAPTNEAFEKLPRGVLERIMGDKVASEAL--MKYHLLNTLQCSEAIMGG-AVFET 323
Query: 675 YQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQQIIEIEDTFE 854
+ + I+I + I + K D NGV+HLID+V+ + ++ +Q+IE+ +
Sbjct: 324 LEGNTIEIGCDGDSITVNGIKMVNKKDIVTNNGVIHLIDQVL--IPDSAKQVIELAGNQQ 381
Query: 855 -TLRAAVAASGLNTLLEGDGQYTLLAP 932
T VA GL + L DG+YTLLAP
Sbjct: 382 TTFTDLVAQLGLASALRPDGEYTLLAP 408
Score = 49.3 bits (116), Expect = 6e-06
Identities = 36/154 (23%), Positives = 71/154 (46%)
Frame = +3
Query: 474 LRPEMEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDELKH 653
LRP+ G +T+ AP N A++ D +S L L+ H++ +V +EL +
Sbjct: 397 LRPD----GEYTLLAPVNNAFS-------DDTLSMDQRLLKLILQNHILKVKVGLNELYN 445
Query: 654 GMALTSMYQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQQII 833
G L ++ +++ Y + N +++ NG +H+ ++I ++ + +
Sbjct: 446 GQKLETI-GGKQLRVFVYRTAVCIENSC-MVRGSKQGRNGAIHIFREIIKPAEKSLHEQL 503
Query: 834 EIEDTFETLRAAVAASGLNTLLEGDGQYTLLAPT 935
+ + F T + + A+ L LL G +TL PT
Sbjct: 504 KQDKRFSTFLSLLEAADLKELLTQPGDWTLFVPT 537
Score = 48.5 bits (114), Expect = 1e-05
Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 3/148 (2%)
Frame = +3
Query: 405 NLYETLGVVGSTTTQLYTDRTEKLRPEMEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVN 584
+L+E L +T L L+ + PG +T+F P+N+A+ + E + L+ + N
Sbjct: 498 SLHEQLKQDKRFSTFLSLLEAADLKELLTQPGDWTLFVPTNDAFKGMTNEEKEILIRDKN 557
Query: 585 IELLNALRYHMVDRRVLTDELKHGMA-LTSMYQNSNIQIHHYPNGIVTVNCARLLKADHH 761
L N + YH+ + + G+ + Q S I + N + VN + ++D
Sbjct: 558 A-LQNIILYHLTPGVFIGKGFEPGVTNILKTTQGSKIYLKGV-NDTLLVNEVKSKESDIM 615
Query: 762 ATNGVVHLIDKVISTVTNNI--QQIIEI 839
TNGV+H++DK++ + Q++EI
Sbjct: 616 TTNGVIHVVDKLLYPADTPVGNDQLLEI 643
>ref|XP_856313.1| PREDICTED: similar to Periostin precursor (PN) (Osteoblast-specific
factor 2) (OSF-2) isoform 3 [Canis familiaris].
Length = 721
Score = 298 bits (763), Expect = 6e-81
Identities = 138/255 (54%), Positives = 184/255 (72%)
Frame = +3
Query: 180 YQLVLQHSRLRGRQHGPNVCAVQKLIGTNKKYFTNCKQWYQRKICGKSTVISYECCPGYE 359
Y +L HSR+RGR GPNVCA+Q+++GT KKYF+ C+ WYQ ICG+ T + YECCPGY
Sbjct: 25 YDKILAHSRIRGRDQGPNVCALQQILGTKKKYFSTCRNWYQGAICGRKTTVLYECCPGYM 84
Query: 360 KVPGEKGCPAALPLSNLYETLGVVGSTTTQLYTDRTEKLRPEMEGPGSFTIFAPSNEAWA 539
++ G KGCPA LP+ ++Y TLG+VG+TTTQ Y+D +LR E+EG GSFT FAPSNEAW
Sbjct: 85 RMEGMKGCPAVLPIDHVYGTLGIVGATTTQRYSD-VSRLREEIEGKGSFTYFAPSNEAWD 143
Query: 540 SLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDELKHGMALTSMYQNSNIQIHHYPNGI 719
+L +++ L SNVN+ELLNAL HMV+ R+LT +LK+GM + SMY N + I+HYPNG+
Sbjct: 144 NLDSDIRRGLESNVNVELLNALHSHMVNNRMLTKDLKNGMIIPSMYNNLGLFINHYPNGV 203
Query: 720 VTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQQIIEIEDTFETLRAAVAASGLNTLL 899
VTVNCAR++ + ATNGVVH+ID+V++ + +IQ IE ED + RAA S + L
Sbjct: 204 VTVNCARIIHGNQIATNGVVHVIDRVLTQIGTSIQDFIEAEDDLSSFRAAAITSDILESL 263
Query: 900 EGDGQYTLLAPTMRP 944
DG +TL + P
Sbjct: 264 GRDGHFTLFLFLLLP 278
Score = 49.3 bits (116), Expect = 6e-06
Identities = 36/154 (23%), Positives = 71/154 (46%)
Frame = +3
Query: 474 LRPEMEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDELKH 653
LRP+ G +T+ AP N A++ D +S L L+ H++ +V +EL +
Sbjct: 309 LRPD----GEYTLLAPVNNAFS-------DDTLSMDQRLLKLILQNHILKVKVGLNELYN 357
Query: 654 GMALTSMYQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQQII 833
G L ++ +++ Y + N +++ NG +H+ ++I ++ + +
Sbjct: 358 GQKLETI-GGKQLRVFVYRTAVCIENSC-MVRGSKQGRNGAIHIFREIIKPAEKSLHEQL 415
Query: 834 EIEDTFETLRAAVAASGLNTLLEGDGQYTLLAPT 935
+ + F T + + A+ L LL G +TL PT
Sbjct: 416 KQDKRFSTFLSLLEAADLKELLTQPGDWTLFVPT 449
Score = 48.5 bits (114), Expect = 1e-05
Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 3/148 (2%)
Frame = +3
Query: 405 NLYETLGVVGSTTTQLYTDRTEKLRPEMEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVN 584
+L+E L +T L L+ + PG +T+F P+N+A+ + E + L+ + N
Sbjct: 410 SLHEQLKQDKRFSTFLSLLEAADLKELLTQPGDWTLFVPTNDAFKGMTNEEKEILIRDKN 469
Query: 585 IELLNALRYHMVDRRVLTDELKHGMA-LTSMYQNSNIQIHHYPNGIVTVNCARLLKADHH 761
L N + YH+ + + G+ + Q S I + N + VN + ++D
Sbjct: 470 A-LQNIILYHLTPGVFIGKGFEPGVTNILKTTQGSKIYLKGV-NDTLLVNEVKSKESDIM 527
Query: 762 ATNGVVHLIDKVISTVTNNI--QQIIEI 839
TNGV+H++DK++ + Q++EI
Sbjct: 528 TTNGVIHVVDKLLYPADTPVGNDQLLEI 555
>ref|XP_541851.2| PREDICTED: similar to Stabilin-1 precursor (FEEL-1 protein) (MS-1
antigen) [Canis familiaris].
Length = 2621
Score = 52.4 bits (124), Expect = 7e-07
Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Frame = +3
Query: 483 EMEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDE--LKHG 656
E++G G FT+F P + +L + L + ++ + RYH+V R L+ + L+ G
Sbjct: 1657 ELKGDGPFTVFVPRADLMTNLSQDELARIRAHHQL----VFRYHVVGCRQLSVQELLEEG 1712
Query: 657 MALTSMYQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVI 800
T ++IH + + AR++ +DH A NGV+H ID+V+
Sbjct: 1713 YVTT--LSGHPLRIHEREGSVYLNDFARVVSSDHEAVNGVLHFIDQVL 1758
Score = 50.4 bits (119), Expect = 3e-06
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Frame = +3
Query: 486 MEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDE--LKHGM 659
++GPG FT+FAPSNEA L L L + +L ++YH+ LT E + G
Sbjct: 585 LDGPGPFTVFAPSNEAVDKLRDGRLIYLFTAGLSKLQELVKYHIYSHGQLTIEKLISKGR 644
Query: 660 ALTSMYQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVI 800
LT Q + I ++ + A L + D A NGV+H+++ ++
Sbjct: 645 VLTMANQVLAVNISEEGRILLGPDGAPLRRVDVLAANGVIHMLEGIL 691
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,351,900
Number of extensions: 1009228
Number of successful extensions: 5602
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5520
Number of HSP's successfully gapped: 21
Length of query: 338
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 235
Effective length of database: 15,440,896
Effective search space: 3628610560
Effective search space used: 3628610560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001486
(1016 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000349.1| transforming growth factor-beta-induced protein... 527 e-150
Alignment gi|NP_001129408.1| periostin isoform 4 [Homo sapiens]. 307 1e-83
Alignment gi|NP_001129407.1| periostin isoform 3 [Homo sapiens]. 307 1e-83
Alignment gi|NP_001129406.1| periostin isoform 2 [Homo sapiens]. 307 1e-83
Alignment gi|NP_006466.2| periostin isoform 1 [Homo sapiens]. 307 1e-83
Alignment gi|NP_055951.2| stabilin-1 precursor [Homo sapiens]. 53 4e-07
Alignment gi|NP_060034.9| stabilin-2 precursor [Homo sapiens]. 53 5e-07
>ref|NP_000349.1| transforming growth factor-beta-induced protein ig-h3 precursor [Homo
sapiens].
Length = 683
Score = 527 bits (1358), Expect = e-150
Identities = 263/285 (92%), Positives = 270/285 (94%), Gaps = 3/285 (1%)
Frame = +3
Query: 171 KSPYQLVLQHSRLRGRQHGPNVCAVQKLIGTNKKYFTNCKQWYQRKICGKSTVISYECCP 350
KSPYQLVLQHSRLRGRQHGPNVCAVQK+IGTN+KYFTNCKQWYQRKICGKSTVISYECCP
Sbjct: 27 KSPYQLVLQHSRLRGRQHGPNVCAVQKVIGTNRKYFTNCKQWYQRKICGKSTVISYECCP 86
Query: 351 GYEKVPGEKGCPAALPLSNLYETLGVVGSTTTQLYTDRTEKLRPEMEGPGSFTIFAPSNE 530
GYEKVPGEKGCPAALPLSNLYETLGVVGSTTTQLYTDRTEKLRPEMEGPGSFTIFAPSNE
Sbjct: 87 GYEKVPGEKGCPAALPLSNLYETLGVVGSTTTQLYTDRTEKLRPEMEGPGSFTIFAPSNE 146
Query: 531 AWASLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDELKHGMALTSMYQNSNIQIHHYP 710
AWASLPAEVLDSLVSNVNIELLNALRYHMV RRVLTDELKHGM LTSMYQNSNIQIHHYP
Sbjct: 147 AWASLPAEVLDSLVSNVNIELLNALRYHMVGRRVLTDELKHGMTLTSMYQNSNIQIHHYP 206
Query: 711 NGIVTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQQIIEIEDTFETLRAAVAASGLN 890
NGIVTVNCARLLKADHHATNGVVHLIDKVIST+TNNIQQIIEIEDTFETLRAAVAASGLN
Sbjct: 207 NGIVTVNCARLLKADHHATNGVVHLIDKVISTITNNIQQIIEIEDTFETLRAAVAASGLN 266
Query: 891 TLLEGDGQYTLLAPTMRPSRRSLLRPET---DLGDPEALRDLLNN 1016
T+LEG+GQYTLLAPT + + ET LGDPEALRDLLNN
Sbjct: 267 TMLEGNGQYTLLAPTNEAFEK--IPSETLNRILGDPEALRDLLNN 309
Score = 60.5 bits (145), Expect = 2e-09
Identities = 41/121 (33%), Positives = 66/121 (54%)
Frame = +3
Query: 465 TEKLRPEMEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDE 644
TE L E G +T+FAP+NEA+ +LP L+ + EL N L+YH+ D +++
Sbjct: 528 TETLNRE----GVYTVFAPTNEAFRALPPRERSRLLGDAK-ELANILKYHIGDEILVSGG 582
Query: 645 LKHGMALTSMYQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQ 824
+ + L S+ Q +++ N +V+VN + + D ATNGVVH+I V+ N Q
Sbjct: 583 IGALVRLKSL-QGDKLEVS-LKNNVVSVNKEPVAEPDIMATNGVVHVITNVLQPPANRPQ 640
Query: 825 Q 827
+
Sbjct: 641 E 641
Score = 58.5 bits (140), Expect = 9e-09
Identities = 39/155 (25%), Positives = 81/155 (52%), Gaps = 2/155 (1%)
Frame = +3
Query: 474 LRPEMEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDELKH 653
L +EG G +T+ AP+NEA+ +P+E L+ ++ + L + L H++ + + +
Sbjct: 265 LNTMLEGNGQYTLLAPTNEAFEKIPSETLNRILGDPEA-LRDLLNNHILKSAMCAEAIVA 323
Query: 654 GMALTSMYQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQQII 833
G+++ ++ + + +++ + + A + D ATNGV+H ID+++ + ++ + +
Sbjct: 324 GLSVETL-EGTTLEVGCSGDMLTINGKAIISNKDILATNGVIHYIDELL--IPDSAKTLF 380
Query: 834 EI--EDTFETLRAAVAASGLNTLLEGDGQYTLLAP 932
E+ E T +GL L G + TLLAP
Sbjct: 381 ELAAESDVSTAIDLFRQAGLGNHLSGSERLTLLAP 415
Score = 56.2 bits (134), Expect = 5e-08
Identities = 48/198 (24%), Positives = 85/198 (42%), Gaps = 6/198 (3%)
Frame = +3
Query: 435 STTTQLYTDRTEKLRPEMEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVNIELLNALRYH 614
ST L+ R L + G T+ AP N V ++ N LR H
Sbjct: 389 STAIDLF--RQAGLGNHLSGSERLTLLAPLNS--------VFKDGTPPIDAHTRNLLRNH 438
Query: 615 MVDRRVLTDELKHGMALTSMYQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDK 794
++ ++ + L HG L ++ +++ Y N + N + D G + +D+
Sbjct: 439 IIKDQLASKYLYHGQTLETL-GGKKLRVFVYRNSLCIENSC-IAAHDKRGRYGTLFTMDR 496
Query: 795 VISTVTNNIQQIIEIEDTFETLRAAVAASGLNTLLEGDGQYTLLAPT------MRPSRRS 956
V++ + +++ ++ F L AA+ ++GL L +G YT+ APT + P RS
Sbjct: 497 VLTPPMGTVMDVLKGDNRFSMLVAAIQSAGLTETLNREGVYTVFAPTNEAFRALPPRERS 556
Query: 957 LLRPETDLGDPEALRDLL 1010
L LGD + L ++L
Sbjct: 557 RL-----LGDAKELANIL 569
>ref|NP_001129408.1| periostin isoform 4 [Homo sapiens].
Length = 751
Score = 307 bits (786), Expect = 1e-83
Identities = 140/252 (55%), Positives = 188/252 (74%)
Frame = +3
Query: 180 YQLVLQHSRLRGRQHGPNVCAVQKLIGTNKKYFTNCKQWYQRKICGKSTVISYECCPGYE 359
Y +L HSR+RGR GPNVCA+Q+++GT KKYF+ CK WY++ ICG+ T + YECCPGY
Sbjct: 25 YDKILAHSRIRGRDQGPNVCALQQILGTKKKYFSTCKNWYKKSICGQKTTVLYECCPGYM 84
Query: 360 KVPGEKGCPAALPLSNLYETLGVVGSTTTQLYTDRTEKLRPEMEGPGSFTIFAPSNEAWA 539
++ G KGCPA LP+ ++Y TLG+VG+TTTQ Y+D + KLR E+EG GSFT FAPSNEAW
Sbjct: 85 RMEGMKGCPAVLPIDHVYGTLGIVGATTTQRYSDAS-KLREEIEGKGSFTYFAPSNEAWD 143
Query: 540 SLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDELKHGMALTSMYQNSNIQIHHYPNGI 719
+L +++ L SNVN+ELLNAL HM+++R+LT +LK+GM + SMY N + I+HYPNG+
Sbjct: 144 NLDSDIRRGLESNVNVELLNALHSHMINKRMLTKDLKNGMIIPSMYNNLGLFINHYPNGV 203
Query: 720 VTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQQIIEIEDTFETLRAAVAASGLNTLL 899
VTVNCAR++ + ATNGVVH+ID+V++ + +IQ IE ED + RAA S + L
Sbjct: 204 VTVNCARIIHGNQIATNGVVHVIDRVLTQIGTSIQDFIEAEDDLSSFRAAAITSDILEAL 263
Query: 900 EGDGQYTLLAPT 935
DG +TL APT
Sbjct: 264 GRDGHFTLFAPT 275
Score = 72.0 bits (175), Expect = 8e-13
Identities = 50/147 (34%), Positives = 83/147 (56%), Gaps = 2/147 (1%)
Frame = +3
Query: 498 GSFTIFAPSNEAWASLPAEVLDSLVSN-VNIELLNALRYHMVDRRVLTDELKHGMALTSM 674
G FT+FAP+NEA+ LP VL+ ++ + V E L ++YH+++ ++ + G A+
Sbjct: 267 GHFTLFAPTNEAFEKLPRGVLERIMGDKVASEAL--MKYHILNTLQCSESIMGG-AVFET 323
Query: 675 YQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQQIIEIEDTFE 854
+ + I+I + I + K D NGV+HLID+V+ + ++ +Q+IE+ +
Sbjct: 324 LEGNTIEIGCDGDSITVNGIKMVNKKDIVTNNGVIHLIDQVL--IPDSAKQVIELAGKQQ 381
Query: 855 -TLRAAVAASGLNTLLEGDGQYTLLAP 932
T VA GL + L DG+YTLLAP
Sbjct: 382 TTFTDLVAQLGLASALRPDGEYTLLAP 408
Score = 49.3 bits (116), Expect = 6e-06
Identities = 38/148 (25%), Positives = 72/148 (48%), Gaps = 3/148 (2%)
Frame = +3
Query: 405 NLYETLGVVGSTTTQLYTDRTEKLRPEMEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVN 584
+L+E L +T L L+ + PG +T+F P+N+A+ + +E + L+ + N
Sbjct: 498 SLHEKLKQDKRFSTFLSLLEAADLKELLTQPGDWTLFVPTNDAFKGMTSEEKEILIRDKN 557
Query: 585 IELLNALRYHMVDRRVLTDELKHGMA-LTSMYQNSNIQIHHYPNGIVTVNCARLLKADHH 761
L N + YH+ + + G+ + Q S I + N + VN + ++D
Sbjct: 558 -ALQNIILYHLTPGVFIGKGFEPGVTNILKTTQGSKIFLKEV-NDTLLVNELKSKESDIM 615
Query: 762 ATNGVVHLIDKVISTVTNNI--QQIIEI 839
TNGV+H++DK++ + Q++EI
Sbjct: 616 TTNGVIHVVDKLLYPADTPVGNDQLLEI 643
Score = 48.9 bits (115), Expect = 7e-06
Identities = 37/154 (24%), Positives = 70/154 (45%)
Frame = +3
Query: 474 LRPEMEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDELKH 653
LRP+ G +T+ AP N A++ D +S L L+ H++ +V +EL +
Sbjct: 397 LRPD----GEYTLLAPVNNAFS-------DDTLSMDQRLLKLILQNHILKVKVGLNELYN 445
Query: 654 GMALTSMYQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQQII 833
G L ++ +++ Y + N + K NG +H+ ++I ++ + +
Sbjct: 446 GQILETI-GGKQLRVFVYRTAVCIENSC-MEKGSKQGRNGAIHIFREIIKPAEKSLHEKL 503
Query: 834 EIEDTFETLRAAVAASGLNTLLEGDGQYTLLAPT 935
+ + F T + + A+ L LL G +TL PT
Sbjct: 504 KQDKRFSTFLSLLEAADLKELLTQPGDWTLFVPT 537
>ref|NP_001129407.1| periostin isoform 3 [Homo sapiens].
Length = 781
Score = 307 bits (786), Expect = 1e-83
Identities = 140/252 (55%), Positives = 188/252 (74%)
Frame = +3
Query: 180 YQLVLQHSRLRGRQHGPNVCAVQKLIGTNKKYFTNCKQWYQRKICGKSTVISYECCPGYE 359
Y +L HSR+RGR GPNVCA+Q+++GT KKYF+ CK WY++ ICG+ T + YECCPGY
Sbjct: 25 YDKILAHSRIRGRDQGPNVCALQQILGTKKKYFSTCKNWYKKSICGQKTTVLYECCPGYM 84
Query: 360 KVPGEKGCPAALPLSNLYETLGVVGSTTTQLYTDRTEKLRPEMEGPGSFTIFAPSNEAWA 539
++ G KGCPA LP+ ++Y TLG+VG+TTTQ Y+D + KLR E+EG GSFT FAPSNEAW
Sbjct: 85 RMEGMKGCPAVLPIDHVYGTLGIVGATTTQRYSDAS-KLREEIEGKGSFTYFAPSNEAWD 143
Query: 540 SLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDELKHGMALTSMYQNSNIQIHHYPNGI 719
+L +++ L SNVN+ELLNAL HM+++R+LT +LK+GM + SMY N + I+HYPNG+
Sbjct: 144 NLDSDIRRGLESNVNVELLNALHSHMINKRMLTKDLKNGMIIPSMYNNLGLFINHYPNGV 203
Query: 720 VTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQQIIEIEDTFETLRAAVAASGLNTLL 899
VTVNCAR++ + ATNGVVH+ID+V++ + +IQ IE ED + RAA S + L
Sbjct: 204 VTVNCARIIHGNQIATNGVVHVIDRVLTQIGTSIQDFIEAEDDLSSFRAAAITSDILEAL 263
Query: 900 EGDGQYTLLAPT 935
DG +TL APT
Sbjct: 264 GRDGHFTLFAPT 275
Score = 72.0 bits (175), Expect = 8e-13
Identities = 50/147 (34%), Positives = 83/147 (56%), Gaps = 2/147 (1%)
Frame = +3
Query: 498 GSFTIFAPSNEAWASLPAEVLDSLVSN-VNIELLNALRYHMVDRRVLTDELKHGMALTSM 674
G FT+FAP+NEA+ LP VL+ ++ + V E L ++YH+++ ++ + G A+
Sbjct: 267 GHFTLFAPTNEAFEKLPRGVLERIMGDKVASEAL--MKYHILNTLQCSESIMGG-AVFET 323
Query: 675 YQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQQIIEIEDTFE 854
+ + I+I + I + K D NGV+HLID+V+ + ++ +Q+IE+ +
Sbjct: 324 LEGNTIEIGCDGDSITVNGIKMVNKKDIVTNNGVIHLIDQVL--IPDSAKQVIELAGKQQ 381
Query: 855 -TLRAAVAASGLNTLLEGDGQYTLLAP 932
T VA GL + L DG+YTLLAP
Sbjct: 382 TTFTDLVAQLGLASALRPDGEYTLLAP 408
Score = 49.3 bits (116), Expect = 6e-06
Identities = 38/148 (25%), Positives = 72/148 (48%), Gaps = 3/148 (2%)
Frame = +3
Query: 405 NLYETLGVVGSTTTQLYTDRTEKLRPEMEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVN 584
+L+E L +T L L+ + PG +T+F P+N+A+ + +E + L+ + N
Sbjct: 498 SLHEKLKQDKRFSTFLSLLEAADLKELLTQPGDWTLFVPTNDAFKGMTSEEKEILIRDKN 557
Query: 585 IELLNALRYHMVDRRVLTDELKHGMA-LTSMYQNSNIQIHHYPNGIVTVNCARLLKADHH 761
L N + YH+ + + G+ + Q S I + N + VN + ++D
Sbjct: 558 -ALQNIILYHLTPGVFIGKGFEPGVTNILKTTQGSKIFLKEV-NDTLLVNELKSKESDIM 615
Query: 762 ATNGVVHLIDKVISTVTNNI--QQIIEI 839
TNGV+H++DK++ + Q++EI
Sbjct: 616 TTNGVIHVVDKLLYPADTPVGNDQLLEI 643
Score = 48.9 bits (115), Expect = 7e-06
Identities = 37/154 (24%), Positives = 70/154 (45%)
Frame = +3
Query: 474 LRPEMEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDELKH 653
LRP+ G +T+ AP N A++ D +S L L+ H++ +V +EL +
Sbjct: 397 LRPD----GEYTLLAPVNNAFS-------DDTLSMDQRLLKLILQNHILKVKVGLNELYN 445
Query: 654 GMALTSMYQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQQII 833
G L ++ +++ Y + N + K NG +H+ ++I ++ + +
Sbjct: 446 GQILETI-GGKQLRVFVYRTAVCIENSC-MEKGSKQGRNGAIHIFREIIKPAEKSLHEKL 503
Query: 834 EIEDTFETLRAAVAASGLNTLLEGDGQYTLLAPT 935
+ + F T + + A+ L LL G +TL PT
Sbjct: 504 KQDKRFSTFLSLLEAADLKELLTQPGDWTLFVPT 537
>ref|NP_001129406.1| periostin isoform 2 [Homo sapiens].
Length = 779
Score = 307 bits (786), Expect = 1e-83
Identities = 140/252 (55%), Positives = 188/252 (74%)
Frame = +3
Query: 180 YQLVLQHSRLRGRQHGPNVCAVQKLIGTNKKYFTNCKQWYQRKICGKSTVISYECCPGYE 359
Y +L HSR+RGR GPNVCA+Q+++GT KKYF+ CK WY++ ICG+ T + YECCPGY
Sbjct: 25 YDKILAHSRIRGRDQGPNVCALQQILGTKKKYFSTCKNWYKKSICGQKTTVLYECCPGYM 84
Query: 360 KVPGEKGCPAALPLSNLYETLGVVGSTTTQLYTDRTEKLRPEMEGPGSFTIFAPSNEAWA 539
++ G KGCPA LP+ ++Y TLG+VG+TTTQ Y+D + KLR E+EG GSFT FAPSNEAW
Sbjct: 85 RMEGMKGCPAVLPIDHVYGTLGIVGATTTQRYSDAS-KLREEIEGKGSFTYFAPSNEAWD 143
Query: 540 SLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDELKHGMALTSMYQNSNIQIHHYPNGI 719
+L +++ L SNVN+ELLNAL HM+++R+LT +LK+GM + SMY N + I+HYPNG+
Sbjct: 144 NLDSDIRRGLESNVNVELLNALHSHMINKRMLTKDLKNGMIIPSMYNNLGLFINHYPNGV 203
Query: 720 VTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQQIIEIEDTFETLRAAVAASGLNTLL 899
VTVNCAR++ + ATNGVVH+ID+V++ + +IQ IE ED + RAA S + L
Sbjct: 204 VTVNCARIIHGNQIATNGVVHVIDRVLTQIGTSIQDFIEAEDDLSSFRAAAITSDILEAL 263
Query: 900 EGDGQYTLLAPT 935
DG +TL APT
Sbjct: 264 GRDGHFTLFAPT 275
Score = 72.0 bits (175), Expect = 8e-13
Identities = 50/147 (34%), Positives = 83/147 (56%), Gaps = 2/147 (1%)
Frame = +3
Query: 498 GSFTIFAPSNEAWASLPAEVLDSLVSN-VNIELLNALRYHMVDRRVLTDELKHGMALTSM 674
G FT+FAP+NEA+ LP VL+ ++ + V E L ++YH+++ ++ + G A+
Sbjct: 267 GHFTLFAPTNEAFEKLPRGVLERIMGDKVASEAL--MKYHILNTLQCSESIMGG-AVFET 323
Query: 675 YQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQQIIEIEDTFE 854
+ + I+I + I + K D NGV+HLID+V+ + ++ +Q+IE+ +
Sbjct: 324 LEGNTIEIGCDGDSITVNGIKMVNKKDIVTNNGVIHLIDQVL--IPDSAKQVIELAGKQQ 381
Query: 855 -TLRAAVAASGLNTLLEGDGQYTLLAP 932
T VA GL + L DG+YTLLAP
Sbjct: 382 TTFTDLVAQLGLASALRPDGEYTLLAP 408
Score = 49.3 bits (116), Expect = 6e-06
Identities = 38/148 (25%), Positives = 72/148 (48%), Gaps = 3/148 (2%)
Frame = +3
Query: 405 NLYETLGVVGSTTTQLYTDRTEKLRPEMEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVN 584
+L+E L +T L L+ + PG +T+F P+N+A+ + +E + L+ + N
Sbjct: 498 SLHEKLKQDKRFSTFLSLLEAADLKELLTQPGDWTLFVPTNDAFKGMTSEEKEILIRDKN 557
Query: 585 IELLNALRYHMVDRRVLTDELKHGMA-LTSMYQNSNIQIHHYPNGIVTVNCARLLKADHH 761
L N + YH+ + + G+ + Q S I + N + VN + ++D
Sbjct: 558 -ALQNIILYHLTPGVFIGKGFEPGVTNILKTTQGSKIFLKEV-NDTLLVNELKSKESDIM 615
Query: 762 ATNGVVHLIDKVISTVTNNI--QQIIEI 839
TNGV+H++DK++ + Q++EI
Sbjct: 616 TTNGVIHVVDKLLYPADTPVGNDQLLEI 643
Score = 48.9 bits (115), Expect = 7e-06
Identities = 37/154 (24%), Positives = 70/154 (45%)
Frame = +3
Query: 474 LRPEMEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDELKH 653
LRP+ G +T+ AP N A++ D +S L L+ H++ +V +EL +
Sbjct: 397 LRPD----GEYTLLAPVNNAFS-------DDTLSMDQRLLKLILQNHILKVKVGLNELYN 445
Query: 654 GMALTSMYQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQQII 833
G L ++ +++ Y + N + K NG +H+ ++I ++ + +
Sbjct: 446 GQILETI-GGKQLRVFVYRTAVCIENSC-MEKGSKQGRNGAIHIFREIIKPAEKSLHEKL 503
Query: 834 EIEDTFETLRAAVAASGLNTLLEGDGQYTLLAPT 935
+ + F T + + A+ L LL G +TL PT
Sbjct: 504 KQDKRFSTFLSLLEAADLKELLTQPGDWTLFVPT 537
>ref|NP_006466.2| periostin isoform 1 [Homo sapiens].
Length = 836
Score = 307 bits (786), Expect = 1e-83
Identities = 140/252 (55%), Positives = 188/252 (74%)
Frame = +3
Query: 180 YQLVLQHSRLRGRQHGPNVCAVQKLIGTNKKYFTNCKQWYQRKICGKSTVISYECCPGYE 359
Y +L HSR+RGR GPNVCA+Q+++GT KKYF+ CK WY++ ICG+ T + YECCPGY
Sbjct: 25 YDKILAHSRIRGRDQGPNVCALQQILGTKKKYFSTCKNWYKKSICGQKTTVLYECCPGYM 84
Query: 360 KVPGEKGCPAALPLSNLYETLGVVGSTTTQLYTDRTEKLRPEMEGPGSFTIFAPSNEAWA 539
++ G KGCPA LP+ ++Y TLG+VG+TTTQ Y+D + KLR E+EG GSFT FAPSNEAW
Sbjct: 85 RMEGMKGCPAVLPIDHVYGTLGIVGATTTQRYSDAS-KLREEIEGKGSFTYFAPSNEAWD 143
Query: 540 SLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDELKHGMALTSMYQNSNIQIHHYPNGI 719
+L +++ L SNVN+ELLNAL HM+++R+LT +LK+GM + SMY N + I+HYPNG+
Sbjct: 144 NLDSDIRRGLESNVNVELLNALHSHMINKRMLTKDLKNGMIIPSMYNNLGLFINHYPNGV 203
Query: 720 VTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQQIIEIEDTFETLRAAVAASGLNTLL 899
VTVNCAR++ + ATNGVVH+ID+V++ + +IQ IE ED + RAA S + L
Sbjct: 204 VTVNCARIIHGNQIATNGVVHVIDRVLTQIGTSIQDFIEAEDDLSSFRAAAITSDILEAL 263
Query: 900 EGDGQYTLLAPT 935
DG +TL APT
Sbjct: 264 GRDGHFTLFAPT 275
Score = 72.0 bits (175), Expect = 8e-13
Identities = 50/147 (34%), Positives = 83/147 (56%), Gaps = 2/147 (1%)
Frame = +3
Query: 498 GSFTIFAPSNEAWASLPAEVLDSLVSN-VNIELLNALRYHMVDRRVLTDELKHGMALTSM 674
G FT+FAP+NEA+ LP VL+ ++ + V E L ++YH+++ ++ + G A+
Sbjct: 267 GHFTLFAPTNEAFEKLPRGVLERIMGDKVASEAL--MKYHILNTLQCSESIMGG-AVFET 323
Query: 675 YQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQQIIEIEDTFE 854
+ + I+I + I + K D NGV+HLID+V+ + ++ +Q+IE+ +
Sbjct: 324 LEGNTIEIGCDGDSITVNGIKMVNKKDIVTNNGVIHLIDQVL--IPDSAKQVIELAGKQQ 381
Query: 855 -TLRAAVAASGLNTLLEGDGQYTLLAP 932
T VA GL + L DG+YTLLAP
Sbjct: 382 TTFTDLVAQLGLASALRPDGEYTLLAP 408
Score = 49.3 bits (116), Expect = 6e-06
Identities = 38/148 (25%), Positives = 72/148 (48%), Gaps = 3/148 (2%)
Frame = +3
Query: 405 NLYETLGVVGSTTTQLYTDRTEKLRPEMEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVN 584
+L+E L +T L L+ + PG +T+F P+N+A+ + +E + L+ + N
Sbjct: 498 SLHEKLKQDKRFSTFLSLLEAADLKELLTQPGDWTLFVPTNDAFKGMTSEEKEILIRDKN 557
Query: 585 IELLNALRYHMVDRRVLTDELKHGMA-LTSMYQNSNIQIHHYPNGIVTVNCARLLKADHH 761
L N + YH+ + + G+ + Q S I + N + VN + ++D
Sbjct: 558 -ALQNIILYHLTPGVFIGKGFEPGVTNILKTTQGSKIFLKEV-NDTLLVNELKSKESDIM 615
Query: 762 ATNGVVHLIDKVISTVTNNI--QQIIEI 839
TNGV+H++DK++ + Q++EI
Sbjct: 616 TTNGVIHVVDKLLYPADTPVGNDQLLEI 643
Score = 48.9 bits (115), Expect = 7e-06
Identities = 37/154 (24%), Positives = 70/154 (45%)
Frame = +3
Query: 474 LRPEMEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDELKH 653
LRP+ G +T+ AP N A++ D +S L L+ H++ +V +EL +
Sbjct: 397 LRPD----GEYTLLAPVNNAFS-------DDTLSMDQRLLKLILQNHILKVKVGLNELYN 445
Query: 654 GMALTSMYQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQQII 833
G L ++ +++ Y + N + K NG +H+ ++I ++ + +
Sbjct: 446 GQILETI-GGKQLRVFVYRTAVCIENSC-MEKGSKQGRNGAIHIFREIIKPAEKSLHEKL 503
Query: 834 EIEDTFETLRAAVAASGLNTLLEGDGQYTLLAPT 935
+ + F T + + A+ L LL G +TL PT
Sbjct: 504 KQDKRFSTFLSLLEAADLKELLTQPGDWTLFVPT 537
>ref|NP_055951.2| stabilin-1 precursor [Homo sapiens].
Length = 2570
Score = 53.1 bits (126), Expect = 4e-07
Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Frame = +3
Query: 486 MEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDE--LKHGM 659
++GPG FT+FAPSNEA SL L L + +L +RYH+ + LT E + G
Sbjct: 535 LDGPGPFTVFAPSNEAVDSLRDGRLIYLFTAGLSKLQELVRYHIYNHGQLTVEKLISKGR 594
Query: 660 ALTSMYQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVI 800
LT Q + I ++ L + D A NGV+H++D ++
Sbjct: 595 ILTMANQVLAVNISEEGRILLGPEGVPLQRVDVMAANGVIHMLDGIL 641
Score = 49.7 bits (117), Expect = 4e-06
Identities = 29/106 (27%), Positives = 51/106 (48%)
Frame = +3
Query: 483 EMEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDELKHGMA 662
E++G G FTIF P + ++L + L + ++ + RYH+V R L E
Sbjct: 1607 ELKGDGPFTIFVPHADLMSNLSQDELARIRAHRQL----VFRYHVVGCRRLRSEDLLEQG 1662
Query: 663 LTSMYQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVI 800
+ ++ I + AR++ +DH A NG++H ID+V+
Sbjct: 1663 YATALSGHPLRFSEREGSIYLNDFARVVSSDHEAVNGILHFIDRVL 1708
>ref|NP_060034.9| stabilin-2 precursor [Homo sapiens].
Length = 2551
Score = 52.8 bits (125), Expect = 5e-07
Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 7/156 (4%)
Frame = +3
Query: 441 TTQLYTDRTEKLRPEMEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVNIELLNALRYHMV 620
T+Q + E ++ GPG FT+FAP + A+ A V D + + LRYH+V
Sbjct: 1609 TSQYFFQLQEHFVKDLVGPGPFTVFAPLSAAFDE-EARVKDWDKYGL---MPQVLRYHVV 1664
Query: 621 D-RRVLTDELKHGMALTSMYQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKV 797
++L + LK TS+ Q I I + + N A+++ +D +TNG+VH+IDK+
Sbjct: 1665 ACHQLLLENLKLISNATSL-QGEPIVISVSQSTVYINNKAKIISSDIISTNGIVHIIDKL 1723
Query: 798 IS------TVTNNIQQIIEIEDTFETLRAAVAASGL 887
+S T +N +I++ T T + S L
Sbjct: 1724 LSPKNLLITPKDNSGRILQNLTTLATNNGYIKFSNL 1759
Score = 50.8 bits (120), Expect = 2e-06
Identities = 39/163 (23%), Positives = 75/163 (46%), Gaps = 10/163 (6%)
Frame = +3
Query: 474 LRPEMEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVNIELLNALRYHMV---DRRVLTDE 644
L+P + + T+ PS +A + + +S NI L ++YHM+ R
Sbjct: 1019 LQPTLSATSNLTVLVPSQQATEDMDQDEKSFWLSQSNIPAL--IKYHMLLGTYRVADLQT 1076
Query: 645 LKHGMALTSMYQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVI-------S 803
L L + Q + + + +G +T+ A ++ D+ ATNGV+H+I+KV+
Sbjct: 1077 LSSSDMLATSLQGNFLHLAKV-DGNITIEGASIVDGDNAATNGVIHIINKVLVPQRRLTG 1135
Query: 804 TVTNNIQQIIEIEDTFETLRAAVAASGLNTLLEGDGQYTLLAP 932
++ N + ++ ++ D + R + L +E YT+ AP
Sbjct: 1136 SLPNLLMRLEQMPD-YSIFRGYIIQYNLANAIEAADAYTVFAP 1177
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,476,666
Number of extensions: 980408
Number of successful extensions: 5322
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 5244
Number of HSP's successfully gapped: 24
Length of query: 338
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 235
Effective length of database: 14,901,872
Effective search space: 3501939920
Effective search space used: 3501939920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001486
(1016 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033395.1| transforming growth factor-beta-induced protein... 529 e-150
Alignment gi|NP_001185695.1| periostin isoform 3 [Mus musculus]. 309 3e-84
Alignment gi|NP_001185694.1| periostin isoform 2 [Mus musculus]. 309 3e-84
Alignment gi|NP_056599.1| periostin isoform 1 [Mus musculus]. 309 3e-84
Alignment gi|NP_619614.1| stabilin-2 precursor [Mus musculus]. 54 3e-07
Alignment gi|NP_619613.2| stabilin-1 precursor [Mus musculus]. 53 4e-07
>ref|NP_033395.1| transforming growth factor-beta-induced protein ig-h3 precursor [Mus
musculus].
Length = 683
Score = 529 bits (1363), Expect = e-150
Identities = 263/285 (92%), Positives = 271/285 (95%), Gaps = 3/285 (1%)
Frame = +3
Query: 171 KSPYQLVLQHSRLRGRQHGPNVCAVQKLIGTNKKYFTNCKQWYQRKICGKSTVISYECCP 350
KSPYQLVLQHSRLRGRQHGPNVCAVQK+IGTNKKYFTNCKQWYQRKICGKSTVISYECCP
Sbjct: 27 KSPYQLVLQHSRLRGRQHGPNVCAVQKVIGTNKKYFTNCKQWYQRKICGKSTVISYECCP 86
Query: 351 GYEKVPGEKGCPAALPLSNLYETLGVVGSTTTQLYTDRTEKLRPEMEGPGSFTIFAPSNE 530
GYEKVPGEKGCPAALPLSNLYET+GVVGSTTTQLYTDRTEKLRPEMEGPGSFTIFAPSNE
Sbjct: 87 GYEKVPGEKGCPAALPLSNLYETMGVVGSTTTQLYTDRTEKLRPEMEGPGSFTIFAPSNE 146
Query: 531 AWASLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDELKHGMALTSMYQNSNIQIHHYP 710
AW+SLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDELKHGM LTSMYQNSNIQIHHYP
Sbjct: 147 AWSSLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDELKHGMTLTSMYQNSNIQIHHYP 206
Query: 711 NGIVTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQQIIEIEDTFETLRAAVAASGLN 890
NGIVTVNCARLLKADHHATNGVVHLIDKVIST+TNNIQQIIEIEDTFETLRAAVAASGLN
Sbjct: 207 NGIVTVNCARLLKADHHATNGVVHLIDKVISTITNNIQQIIEIEDTFETLRAAVAASGLN 266
Query: 891 TLLEGDGQYTLLAPTMRPSRRSLLRPET---DLGDPEALRDLLNN 1016
T+LEGDGQ+TLLAPT + + ET LGDPEALRDLLNN
Sbjct: 267 TVLEGDGQFTLLAPTNEAFEK--IPAETLNRILGDPEALRDLLNN 309
Score = 65.5 bits (158), Expect = 6e-11
Identities = 43/155 (27%), Positives = 83/155 (53%), Gaps = 2/155 (1%)
Frame = +3
Query: 474 LRPEMEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDELKH 653
L +EG G FT+ AP+NEA+ +PAE L+ ++ + L + L H++ + + +
Sbjct: 265 LNTVLEGDGQFTLLAPTNEAFEKIPAETLNRILGDPEA-LRDLLNNHILKSAMCAEAIVA 323
Query: 654 GMALTSMYQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQQII 833
GM++ ++ + +++ + + A + D ATNGV+H ID+++ + ++ + ++
Sbjct: 324 GMSMETL-GGTTLEVGCSGDKLTINGKAVISNKDILATNGVIHFIDELL--IPDSAKTLL 380
Query: 834 EI--EDTFETLRAAVAASGLNTLLEGDGQYTLLAP 932
E+ E T + +GL+T L G Q T LAP
Sbjct: 381 ELAGESDVSTAIDILKQAGLDTHLSGKEQLTFLAP 415
Score = 64.3 bits (155), Expect = 1e-10
Identities = 38/110 (34%), Positives = 66/110 (60%)
Frame = +3
Query: 498 GSFTIFAPSNEAWASLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDELKHGMALTSMY 677
G +T+FAP+NEA+ ++P E L+ L++N EL N L+YH+ D +++ + + L S+
Sbjct: 535 GVYTVFAPTNEAFQAMPPEELNKLLANAK-ELTNILKYHIGDEILVSGGIGALVRLKSL- 592
Query: 678 QNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQQ 827
Q +++ N +V+VN + + D ATNGVV+ I+ V+ N Q+
Sbjct: 593 QGDKLEVSS-KNNVVSVNKEPVAETDIMATNGVVYAINTVLQPPANRPQE 641
Score = 48.9 bits (115), Expect = 6e-06
Identities = 34/154 (22%), Positives = 67/154 (43%)
Frame = +3
Query: 474 LRPEMEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDELKH 653
L + G T AP N V V ++ ++ L HMV ++ + L
Sbjct: 400 LDTHLSGKEQLTFLAPLNS--------VFKDGVPRIDAQMKTLLLNHMVKEQLASKYLYS 451
Query: 654 GMALTSMYQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQQII 833
G L ++ +++ Y N + N + D G + +D++++ + ++
Sbjct: 452 GQTLDTL-GGKKLRVFVYRNSLCIENSC-IAAHDKRGRFGTLFTMDRMLTPPMGTVMDVL 509
Query: 834 EIEDTFETLRAAVAASGLNTLLEGDGQYTLLAPT 935
+ ++ F L AA+ ++GL +L +G YT+ APT
Sbjct: 510 KGDNRFSMLVAAIQSAGLMEILNREGVYTVFAPT 543
>ref|NP_001185695.1| periostin isoform 3 [Mus musculus].
Length = 783
Score = 309 bits (791), Expect = 3e-84
Identities = 143/254 (56%), Positives = 188/254 (74%)
Frame = +3
Query: 174 SPYQLVLQHSRLRGRQHGPNVCAVQKLIGTNKKYFTNCKQWYQRKICGKSTVISYECCPG 353
S Y VL HSR+RGR GPNVCA+Q+++GT KKYF++CK WYQ ICGK T + YECCPG
Sbjct: 25 SYYDKVLAHSRIRGRDQGPNVCALQQILGTKKKYFSSCKNWYQGAICGKKTTVLYECCPG 84
Query: 354 YEKVPGEKGCPAALPLSNLYETLGVVGSTTTQLYTDRTEKLRPEMEGPGSFTIFAPSNEA 533
Y ++ G KGCPA +P+ ++Y TLG+VG+TTTQ Y+D KLR E+EG GS+T FAPSNEA
Sbjct: 85 YMRMEGMKGCPAVMPIDHVYGTLGIVGATTTQHYSD-VSKLREEIEGKGSYTYFAPSNEA 143
Query: 534 WASLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDELKHGMALTSMYQNSNIQIHHYPN 713
W +L +++ L +NVN+ELLNAL HMV++R+LT +LKHGM + SMY N + I+HYPN
Sbjct: 144 WENLDSDIRRGLENNVNVELLNALHSHMVNKRMLTKDLKHGMVIPSMYNNLGLFINHYPN 203
Query: 714 GIVTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQQIIEIEDTFETLRAAVAASGLNT 893
G+VTVNCAR++ + ATNGVVH+ID+V++ + +IQ +E ED + RAA S L
Sbjct: 204 GVVTVNCARVIHGNQIATNGVVHVIDRVLTQIGTSIQDFLEAEDDLSSFRAAAITSDLLE 263
Query: 894 LLEGDGQYTLLAPT 935
L DG +TL APT
Sbjct: 264 SLGRDGHFTLFAPT 277
Score = 72.4 bits (176), Expect = 5e-13
Identities = 52/158 (32%), Positives = 87/158 (55%), Gaps = 2/158 (1%)
Frame = +3
Query: 465 TEKLRPEMEGPGSFTIFAPSNEAWASLPAEVLDSLVSN-VNIELLNALRYHMVDRRVLTD 641
T L + G FT+FAP+NEA+ LP VL+ ++ + V E L ++YH+++ ++
Sbjct: 258 TSDLLESLGRDGHFTLFAPTNEAFEKLPRGVLERIMGDKVASEAL--MKYHILNTLQCSE 315
Query: 642 ELKHGMALTSMYQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVISTVTNNI 821
+ G +M + + I+I + I + K D NGV+HLID+V+ + ++
Sbjct: 316 AITGGAVFETM-EGNTIEIGCEGDSISINGIKMVNKKDIVTKNGVIHLIDEVL--IPDSA 372
Query: 822 QQIIEIEDTFE-TLRAAVAASGLNTLLEGDGQYTLLAP 932
+Q+IE+ + T VA GL + L+ DG+YTLLAP
Sbjct: 373 KQVIELAGKQQTTFTDLVAQLGLASSLKPDGEYTLLAP 410
Score = 50.1 bits (118), Expect = 3e-06
Identities = 41/169 (24%), Positives = 81/169 (47%), Gaps = 18/169 (10%)
Frame = +3
Query: 474 LRPEMEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDELKH 653
L+ + PG +T+FAP+N+A+ + +E + L+ + N L N + YH+ + +
Sbjct: 523 LKDLLTQPGDWTLFAPTNDAFKGMTSEERELLIGDKNA-LQNIILYHLTPGVYIGKGFEP 581
Query: 654 GMA-LTSMYQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKV----------- 797
G+ + Q S I + N + VN + ++D TNGV+H++DK+
Sbjct: 582 GVTNILKTTQGSKIYLKGV-NETLLVNELKSKESDIMTTNGVIHVVDKLLYPADIPVGND 640
Query: 798 -ISTVTNNIQQIIEIE----DTFETLRAAVAASGLNTL-LEGDGQYTLL 926
+ + N + + I+I+ TF+ + V + + +EGD + L+
Sbjct: 641 QLLELLNKLIKYIQIKFVRGSTFKEIPMTVYRPAMTKIQIEGDPDFRLI 689
Score = 49.7 bits (117), Expect = 4e-06
Identities = 42/185 (22%), Positives = 80/185 (43%), Gaps = 6/185 (3%)
Frame = +3
Query: 474 LRPEMEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDELKH 653
L ++ G +T+ AP N A++ D +S L L+ H++ +V +L +
Sbjct: 395 LASSLKPDGEYTLLAPVNNAFS-------DDTLSMDQRLLKLILQNHILKVKVGLSDLYN 447
Query: 654 GMALTSMYQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQQII 833
G L ++ +++ Y I N +++ NG +H+ ++I ++ +
Sbjct: 448 GQILETI-GGKQLRVFVYRTAICIENSC-MVRGSKQGRNGAIHIFREIIQPAEKSLHDKL 505
Query: 834 EIEDTFETLRAAVAASGLNTLLEGDGQYTLLAPT------MRPSRRSLLRPETDLGDPEA 995
+ F + + A+ L LL G +TL APT M R LL +GD A
Sbjct: 506 RQDKRFSIFLSLLEAADLKDLLTQPGDWTLFAPTNDAFKGMTSEERELL-----IGDKNA 560
Query: 996 LRDLL 1010
L++++
Sbjct: 561 LQNII 565
>ref|NP_001185694.1| periostin isoform 2 [Mus musculus].
Length = 810
Score = 309 bits (791), Expect = 3e-84
Identities = 143/254 (56%), Positives = 188/254 (74%)
Frame = +3
Query: 174 SPYQLVLQHSRLRGRQHGPNVCAVQKLIGTNKKYFTNCKQWYQRKICGKSTVISYECCPG 353
S Y VL HSR+RGR GPNVCA+Q+++GT KKYF++CK WYQ ICGK T + YECCPG
Sbjct: 25 SYYDKVLAHSRIRGRDQGPNVCALQQILGTKKKYFSSCKNWYQGAICGKKTTVLYECCPG 84
Query: 354 YEKVPGEKGCPAALPLSNLYETLGVVGSTTTQLYTDRTEKLRPEMEGPGSFTIFAPSNEA 533
Y ++ G KGCPA +P+ ++Y TLG+VG+TTTQ Y+D KLR E+EG GS+T FAPSNEA
Sbjct: 85 YMRMEGMKGCPAVMPIDHVYGTLGIVGATTTQHYSD-VSKLREEIEGKGSYTYFAPSNEA 143
Query: 534 WASLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDELKHGMALTSMYQNSNIQIHHYPN 713
W +L +++ L +NVN+ELLNAL HMV++R+LT +LKHGM + SMY N + I+HYPN
Sbjct: 144 WENLDSDIRRGLENNVNVELLNALHSHMVNKRMLTKDLKHGMVIPSMYNNLGLFINHYPN 203
Query: 714 GIVTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQQIIEIEDTFETLRAAVAASGLNT 893
G+VTVNCAR++ + ATNGVVH+ID+V++ + +IQ +E ED + RAA S L
Sbjct: 204 GVVTVNCARVIHGNQIATNGVVHVIDRVLTQIGTSIQDFLEAEDDLSSFRAAAITSDLLE 263
Query: 894 LLEGDGQYTLLAPT 935
L DG +TL APT
Sbjct: 264 SLGRDGHFTLFAPT 277
Score = 72.4 bits (176), Expect = 5e-13
Identities = 52/158 (32%), Positives = 87/158 (55%), Gaps = 2/158 (1%)
Frame = +3
Query: 465 TEKLRPEMEGPGSFTIFAPSNEAWASLPAEVLDSLVSN-VNIELLNALRYHMVDRRVLTD 641
T L + G FT+FAP+NEA+ LP VL+ ++ + V E L ++YH+++ ++
Sbjct: 258 TSDLLESLGRDGHFTLFAPTNEAFEKLPRGVLERIMGDKVASEAL--MKYHILNTLQCSE 315
Query: 642 ELKHGMALTSMYQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVISTVTNNI 821
+ G +M + + I+I + I + K D NGV+HLID+V+ + ++
Sbjct: 316 AITGGAVFETM-EGNTIEIGCEGDSISINGIKMVNKKDIVTKNGVIHLIDEVL--IPDSA 372
Query: 822 QQIIEIEDTFE-TLRAAVAASGLNTLLEGDGQYTLLAP 932
+Q+IE+ + T VA GL + L+ DG+YTLLAP
Sbjct: 373 KQVIELAGKQQTTFTDLVAQLGLASSLKPDGEYTLLAP 410
Score = 49.7 bits (117), Expect = 4e-06
Identities = 42/185 (22%), Positives = 80/185 (43%), Gaps = 6/185 (3%)
Frame = +3
Query: 474 LRPEMEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDELKH 653
L ++ G +T+ AP N A++ D +S L L+ H++ +V +L +
Sbjct: 395 LASSLKPDGEYTLLAPVNNAFS-------DDTLSMDQRLLKLILQNHILKVKVGLSDLYN 447
Query: 654 GMALTSMYQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQQII 833
G L ++ +++ Y I N +++ NG +H+ ++I ++ +
Sbjct: 448 GQILETI-GGKQLRVFVYRTAICIENSC-MVRGSKQGRNGAIHIFREIIQPAEKSLHDKL 505
Query: 834 EIEDTFETLRAAVAASGLNTLLEGDGQYTLLAPT------MRPSRRSLLRPETDLGDPEA 995
+ F + + A+ L LL G +TL APT M R LL +GD A
Sbjct: 506 RQDKRFSIFLSLLEAADLKDLLTQPGDWTLFAPTNDAFKGMTSEERELL-----IGDKNA 560
Query: 996 LRDLL 1010
L++++
Sbjct: 561 LQNII 565
Score = 49.7 bits (117), Expect = 4e-06
Identities = 31/110 (28%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
Frame = +3
Query: 474 LRPEMEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDELKH 653
L+ + PG +T+FAP+N+A+ + +E + L+ + N L N + YH+ + +
Sbjct: 523 LKDLLTQPGDWTLFAPTNDAFKGMTSEERELLIGDKNA-LQNIILYHLTPGVYIGKGFEP 581
Query: 654 GMA-LTSMYQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVI 800
G+ + Q S I + N + VN + ++D TNGV+H++DK++
Sbjct: 582 GVTNILKTTQGSKIYLKGV-NETLLVNELKSKESDIMTTNGVIHVVDKLL 630
>ref|NP_056599.1| periostin isoform 1 [Mus musculus].
Length = 811
Score = 309 bits (791), Expect = 3e-84
Identities = 143/254 (56%), Positives = 188/254 (74%)
Frame = +3
Query: 174 SPYQLVLQHSRLRGRQHGPNVCAVQKLIGTNKKYFTNCKQWYQRKICGKSTVISYECCPG 353
S Y VL HSR+RGR GPNVCA+Q+++GT KKYF++CK WYQ ICGK T + YECCPG
Sbjct: 25 SYYDKVLAHSRIRGRDQGPNVCALQQILGTKKKYFSSCKNWYQGAICGKKTTVLYECCPG 84
Query: 354 YEKVPGEKGCPAALPLSNLYETLGVVGSTTTQLYTDRTEKLRPEMEGPGSFTIFAPSNEA 533
Y ++ G KGCPA +P+ ++Y TLG+VG+TTTQ Y+D KLR E+EG GS+T FAPSNEA
Sbjct: 85 YMRMEGMKGCPAVMPIDHVYGTLGIVGATTTQHYSD-VSKLREEIEGKGSYTYFAPSNEA 143
Query: 534 WASLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDELKHGMALTSMYQNSNIQIHHYPN 713
W +L +++ L +NVN+ELLNAL HMV++R+LT +LKHGM + SMY N + I+HYPN
Sbjct: 144 WENLDSDIRRGLENNVNVELLNALHSHMVNKRMLTKDLKHGMVIPSMYNNLGLFINHYPN 203
Query: 714 GIVTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQQIIEIEDTFETLRAAVAASGLNT 893
G+VTVNCAR++ + ATNGVVH+ID+V++ + +IQ +E ED + RAA S L
Sbjct: 204 GVVTVNCARVIHGNQIATNGVVHVIDRVLTQIGTSIQDFLEAEDDLSSFRAAAITSDLLE 263
Query: 894 LLEGDGQYTLLAPT 935
L DG +TL APT
Sbjct: 264 SLGRDGHFTLFAPT 277
Score = 72.4 bits (176), Expect = 5e-13
Identities = 52/158 (32%), Positives = 87/158 (55%), Gaps = 2/158 (1%)
Frame = +3
Query: 465 TEKLRPEMEGPGSFTIFAPSNEAWASLPAEVLDSLVSN-VNIELLNALRYHMVDRRVLTD 641
T L + G FT+FAP+NEA+ LP VL+ ++ + V E L ++YH+++ ++
Sbjct: 258 TSDLLESLGRDGHFTLFAPTNEAFEKLPRGVLERIMGDKVASEAL--MKYHILNTLQCSE 315
Query: 642 ELKHGMALTSMYQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVISTVTNNI 821
+ G +M + + I+I + I + K D NGV+HLID+V+ + ++
Sbjct: 316 AITGGAVFETM-EGNTIEIGCEGDSISINGIKMVNKKDIVTKNGVIHLIDEVL--IPDSA 372
Query: 822 QQIIEIEDTFE-TLRAAVAASGLNTLLEGDGQYTLLAP 932
+Q+IE+ + T VA GL + L+ DG+YTLLAP
Sbjct: 373 KQVIELAGKQQTTFTDLVAQLGLASSLKPDGEYTLLAP 410
Score = 50.1 bits (118), Expect = 3e-06
Identities = 41/169 (24%), Positives = 81/169 (47%), Gaps = 18/169 (10%)
Frame = +3
Query: 474 LRPEMEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDELKH 653
L+ + PG +T+FAP+N+A+ + +E + L+ + N L N + YH+ + +
Sbjct: 523 LKDLLTQPGDWTLFAPTNDAFKGMTSEERELLIGDKNA-LQNIILYHLTPGVYIGKGFEP 581
Query: 654 GMA-LTSMYQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKV----------- 797
G+ + Q S I + N + VN + ++D TNGV+H++DK+
Sbjct: 582 GVTNILKTTQGSKIYLKGV-NETLLVNELKSKESDIMTTNGVIHVVDKLLYPADIPVGND 640
Query: 798 -ISTVTNNIQQIIEIE----DTFETLRAAVAASGLNTL-LEGDGQYTLL 926
+ + N + + I+I+ TF+ + V + + +EGD + L+
Sbjct: 641 QLLELLNKLIKYIQIKFVRGSTFKEIPMTVYRPAMTKIQIEGDPDFRLI 689
Score = 49.7 bits (117), Expect = 4e-06
Identities = 42/185 (22%), Positives = 80/185 (43%), Gaps = 6/185 (3%)
Frame = +3
Query: 474 LRPEMEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDELKH 653
L ++ G +T+ AP N A++ D +S L L+ H++ +V +L +
Sbjct: 395 LASSLKPDGEYTLLAPVNNAFS-------DDTLSMDQRLLKLILQNHILKVKVGLSDLYN 447
Query: 654 GMALTSMYQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQQII 833
G L ++ +++ Y I N +++ NG +H+ ++I ++ +
Sbjct: 448 GQILETI-GGKQLRVFVYRTAICIENSC-MVRGSKQGRNGAIHIFREIIQPAEKSLHDKL 505
Query: 834 EIEDTFETLRAAVAASGLNTLLEGDGQYTLLAPT------MRPSRRSLLRPETDLGDPEA 995
+ F + + A+ L LL G +TL APT M R LL +GD A
Sbjct: 506 RQDKRFSIFLSLLEAADLKDLLTQPGDWTLFAPTNDAFKGMTSEERELL-----IGDKNA 560
Query: 996 LRDLL 1010
L++++
Sbjct: 561 LQNII 565
>ref|NP_619614.1| stabilin-2 precursor [Mus musculus].
Length = 2559
Score = 53.5 bits (127), Expect = 3e-07
Identities = 39/126 (30%), Positives = 69/126 (54%), Gaps = 4/126 (3%)
Frame = +3
Query: 438 TTTQLYTDRTEKLRPEMEGPGSFTIFAPSNEAWAS---LPAEVLDSLVSNVNIELLNALR 608
+T+Q + E E+ GPG FT+F PS++++ S L L+S + LR
Sbjct: 1615 STSQYFFQLQEHAVQELAGPGPFTVFVPSSDSFNSESKLKVWDKQGLMSQI-------LR 1667
Query: 609 YHMVD-RRVLTDELKHGMALTSMYQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHL 785
YH+V +++L + LK + T++ Q I I + ++ A++L +D +TNGV+H+
Sbjct: 1668 YHVVACQQLLLENLKVITSATTL-QGEPISISVSQDTVLINKKAKVLSSDIISTNGVIHV 1726
Query: 786 IDKVIS 803
ID ++S
Sbjct: 1727 IDTLLS 1732
>ref|NP_619613.2| stabilin-1 precursor [Mus musculus].
Length = 2571
Score = 52.8 bits (125), Expect = 4e-07
Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 4/140 (2%)
Frame = +3
Query: 486 MEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDE--LKHGM 659
++GPG FT+FAPSNEA SL L L + +L +RYH+ + LT E + G
Sbjct: 536 LDGPGPFTVFAPSNEAVDSLRDGRLIYLFTAGLSKLQELVRYHIYNHGQLTVEKLISKGR 595
Query: 660 ALTSMYQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVI--STVTNNIQQII 833
LT Q + I ++ + + D A NGV+H+++ ++ T+ + +
Sbjct: 596 VLTMANQVLTVNISEEGRILLGPEGIPVRRVDVPAANGVIHMLEGILLPPTILPILPKHC 655
Query: 834 EIEDTFETLRAAVAASGLNT 893
+ E L + V LNT
Sbjct: 656 DEEQHQTVLGSCVDCQALNT 675
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,662,931
Number of extensions: 807304
Number of successful extensions: 4181
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4108
Number of HSP's successfully gapped: 18
Length of query: 338
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 236
Effective length of database: 12,553,887
Effective search space: 2962717332
Effective search space used: 2962717332
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001486
(1016 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193280.1| periostin, osteoblast specific factor isofor... 308 3e-84
Alignment gi|NP_001193276.1| periostin, osteoblast specific factor isofor... 308 3e-84
Alignment gi|XP_003354334.1| PREDICTED: transforming growth factor-beta-i... 62 4e-10
Alignment gi|XP_003355706.1| PREDICTED: stabilin-2 [Sus scrofa]. 55 6e-08
Alignment gi|XP_003132304.1| PREDICTED: stabilin-1-like [Sus scrofa]. 51 1e-06
>ref|NP_001193280.1| periostin, osteoblast specific factor isoform 2 [Sus scrofa].
Length = 781
Score = 308 bits (789), Expect = 3e-84
Identities = 143/252 (56%), Positives = 186/252 (73%)
Frame = +3
Query: 180 YQLVLQHSRLRGRQHGPNVCAVQKLIGTNKKYFTNCKQWYQRKICGKSTVISYECCPGYE 359
Y +L HSR+RGR GPNVCA+Q+++GT KKYF+ CK WYQ ICGK T + YECCPGY
Sbjct: 25 YDKILAHSRIRGRDQGPNVCALQQILGTKKKYFSTCKNWYQGAICGKKTTVLYECCPGYM 84
Query: 360 KVPGEKGCPAALPLSNLYETLGVVGSTTTQLYTDRTEKLRPEMEGPGSFTIFAPSNEAWA 539
++ G KGCPA LP+ ++Y TLG+VG+TTTQ Y+D KLR E+EG GSFT FAPSNEAW
Sbjct: 85 RMEGMKGCPAVLPIDHVYGTLGIVGATTTQRYSD-VSKLREEIEGKGSFTYFAPSNEAWD 143
Query: 540 SLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDELKHGMALTSMYQNSNIQIHHYPNGI 719
+L +++ L SNVN+ELLNAL HMV++R+LT +LK+GM + SMY N + I+HYPNG+
Sbjct: 144 NLDSDIRRGLESNVNVELLNALHSHMVNKRMLTKDLKNGMIIPSMYNNLGLFINHYPNGV 203
Query: 720 VTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQQIIEIEDTFETLRAAVAASGLNTLL 899
VTVNCAR++ + ATNGVVH+ID+V++ + +IQ IE ED + RAA S + L
Sbjct: 204 VTVNCARIIHGNQIATNGVVHVIDRVLTQIGTSIQDFIEAEDDLSSFRAAAITSDILESL 263
Query: 900 EGDGQYTLLAPT 935
DG +TL APT
Sbjct: 264 GRDGHFTLFAPT 275
Score = 72.4 bits (176), Expect = 4e-13
Identities = 50/147 (34%), Positives = 83/147 (56%), Gaps = 2/147 (1%)
Frame = +3
Query: 498 GSFTIFAPSNEAWASLPAEVLDSLVSN-VNIELLNALRYHMVDRRVLTDELKHGMALTSM 674
G FT+FAP+NEA+ LP VL+ ++ + V E L ++YH+++ ++ + G A+
Sbjct: 267 GHFTLFAPTNEAFEKLPRGVLERIMGDKVASEAL--MKYHILNTLQCSEAITSG-AVFET 323
Query: 675 YQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQQIIEIEDTFE 854
+ + I+I + I + K D NGV+HLID+V+ + ++ +Q+IE+ +
Sbjct: 324 LEGNTIEIGCDGDSITVNGIKMVNKKDIVTNNGVIHLIDQVL--IPDSAKQVIELAGNQQ 381
Query: 855 -TLRAAVAASGLNTLLEGDGQYTLLAP 932
T VA GL + L DG+YTLLAP
Sbjct: 382 TTFTDLVAQLGLASALRPDGEYTLLAP 408
>ref|NP_001193276.1| periostin, osteoblast specific factor isoform 1 [Sus scrofa].
Length = 836
Score = 308 bits (789), Expect = 3e-84
Identities = 143/252 (56%), Positives = 186/252 (73%)
Frame = +3
Query: 180 YQLVLQHSRLRGRQHGPNVCAVQKLIGTNKKYFTNCKQWYQRKICGKSTVISYECCPGYE 359
Y +L HSR+RGR GPNVCA+Q+++GT KKYF+ CK WYQ ICGK T + YECCPGY
Sbjct: 25 YDKILAHSRIRGRDQGPNVCALQQILGTKKKYFSTCKNWYQGAICGKKTTVLYECCPGYM 84
Query: 360 KVPGEKGCPAALPLSNLYETLGVVGSTTTQLYTDRTEKLRPEMEGPGSFTIFAPSNEAWA 539
++ G KGCPA LP+ ++Y TLG+VG+TTTQ Y+D KLR E+EG GSFT FAPSNEAW
Sbjct: 85 RMEGMKGCPAVLPIDHVYGTLGIVGATTTQRYSD-VSKLREEIEGKGSFTYFAPSNEAWD 143
Query: 540 SLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDELKHGMALTSMYQNSNIQIHHYPNGI 719
+L +++ L SNVN+ELLNAL HMV++R+LT +LK+GM + SMY N + I+HYPNG+
Sbjct: 144 NLDSDIRRGLESNVNVELLNALHSHMVNKRMLTKDLKNGMIIPSMYNNLGLFINHYPNGV 203
Query: 720 VTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQQIIEIEDTFETLRAAVAASGLNTLL 899
VTVNCAR++ + ATNGVVH+ID+V++ + +IQ IE ED + RAA S + L
Sbjct: 204 VTVNCARIIHGNQIATNGVVHVIDRVLTQIGTSIQDFIEAEDDLSSFRAAAITSDILESL 263
Query: 900 EGDGQYTLLAPT 935
DG +TL APT
Sbjct: 264 GRDGHFTLFAPT 275
Score = 72.4 bits (176), Expect = 4e-13
Identities = 50/147 (34%), Positives = 83/147 (56%), Gaps = 2/147 (1%)
Frame = +3
Query: 498 GSFTIFAPSNEAWASLPAEVLDSLVSN-VNIELLNALRYHMVDRRVLTDELKHGMALTSM 674
G FT+FAP+NEA+ LP VL+ ++ + V E L ++YH+++ ++ + G A+
Sbjct: 267 GHFTLFAPTNEAFEKLPRGVLERIMGDKVASEAL--MKYHILNTLQCSEAITSG-AVFET 323
Query: 675 YQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVISTVTNNIQQIIEIEDTFE 854
+ + I+I + I + K D NGV+HLID+V+ + ++ +Q+IE+ +
Sbjct: 324 LEGNTIEIGCDGDSITVNGIKMVNKKDIVTNNGVIHLIDQVL--IPDSAKQVIELAGNQQ 381
Query: 855 -TLRAAVAASGLNTLLEGDGQYTLLAP 932
T VA GL + L DG+YTLLAP
Sbjct: 382 TTFTDLVAQLGLASALRPDGEYTLLAP 408
>ref|XP_003354334.1| PREDICTED: transforming growth factor-beta-induced protein
ig-h3-like, partial [Sus scrofa].
Length = 196
Score = 62.4 bits (150), Expect = 4e-10
Identities = 42/112 (37%), Positives = 65/112 (58%)
Frame = +3
Query: 465 TEKLRPEMEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDE 644
TE L E G +T+FAP+NEA+ +LP + L+ N EL N L+YH+ D +++
Sbjct: 89 TETLNRE----GVYTVFAPTNEAFQALPLGERNKLLGNAK-ELANILKYHVGDEILVSGG 143
Query: 645 LKHGMALTSMYQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVI 800
+ + L S+ Q +++ N +VTVN + +AD ATNGVVH I+ V+
Sbjct: 144 IGALVRLKSL-QGDKLEVSS-KNSLVTVNKEPVAEADIMATNGVVHTINTVL 193
>ref|XP_003355706.1| PREDICTED: stabilin-2 [Sus scrofa].
Length = 2360
Score = 55.1 bits (131), Expect = 6e-08
Identities = 38/124 (30%), Positives = 67/124 (54%), Gaps = 3/124 (2%)
Frame = +3
Query: 441 TTQLYTDRTEKLRPEMEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVNIELL--NALRYH 614
T+Q Y E ++ GPG FT+ APS+ A+ + P + N + + L LRYH
Sbjct: 1597 TSQYYFQLQEHSIHDLLGPGPFTVLAPSSAAFDAEPQ------IKNWDKQGLMPQVLRYH 1650
Query: 615 MVD-RRVLTDELKHGMALTSMYQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLID 791
++ ++L + LK TS+ Q ++ I + N A+++ +D +TNG++H+ID
Sbjct: 1651 VIACHQLLLENLKSTPNATSL-QGESLTISVSQGTVFINNKAKIISSDIISTNGIIHIID 1709
Query: 792 KVIS 803
K++S
Sbjct: 1710 KLLS 1713
Score = 49.7 bits (117), Expect = 3e-06
Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 14/167 (8%)
Frame = +3
Query: 474 LRPEMEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVNIELLNALRYH-------MVDRRV 632
L+P + + T+ PS +A L E ++ NI L ++YH + D +
Sbjct: 1007 LQPLLSATSNLTVLVPSRQAIEDLDQEEKAFWLTKSNIPAL--IKYHTLLGTYGVADLQA 1064
Query: 633 LTDELKHGMALTSMYQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVI---- 800
L+ M TS+ Q S + + NG +T+ A ++ D+ ATNGV+H+I+KV+
Sbjct: 1065 LSPS---DMLATSL-QGSFLHLAKV-NGNITIEGASVIDGDNAATNGVIHIINKVLLPQR 1119
Query: 801 ---STVTNNIQQIIEIEDTFETLRAAVAASGLNTLLEGDGQYTLLAP 932
++ N + ++ ++ D + R + L + +E YT+ AP
Sbjct: 1120 GLTGSLPNLLTRLDQMPD-YSIFRGYIIQYNLASTIEAADAYTVFAP 1165
>ref|XP_003132304.1| PREDICTED: stabilin-1-like [Sus scrofa].
Length = 2400
Score = 50.8 bits (120), Expect = 1e-06
Identities = 41/140 (29%), Positives = 63/140 (45%), Gaps = 4/140 (2%)
Frame = +3
Query: 486 MEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDE--LKHGM 659
++GPG FT+FAPSNEA L L L + +L +RYH+ LT E + G
Sbjct: 533 LDGPGPFTVFAPSNEAVDGLRDGRLVYLFTAGLSKLQELVRYHVYSHGQLTVEKLISKGR 592
Query: 660 ALTSMYQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVI--STVTNNIQQII 833
LT Q + I ++ L + D A NGV+H+++ ++ T+ + +I
Sbjct: 593 VLTMANQVLAVNISEEGRILLGPEGVPLRRVDVLAANGVIHMLEGILLPPTILPILPKIC 652
Query: 834 EIEDTFETLRAAVAASGLNT 893
E + V LNT
Sbjct: 653 NEEQHKVVAGSCVDCQALNT 672
Score = 48.5 bits (114), Expect = 6e-06
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Frame = +3
Query: 483 EMEGPGSFTIFAPSNEAWASLPAEVLDSLVSNVNIELLNALRYHMVDRRVLTDE--LKHG 656
E++G G FTIF P + +L + + + +N + RYH+V R L + L+ G
Sbjct: 1605 ELKGDGPFTIFVPHADLMTNLSQDEMARIRANRQL----VFRYHVVGCRQLRSQELLEEG 1660
Query: 657 MALTSMYQNSNIQIHHYPNGIVTVNCARLLKADHHATNGVVHLIDKVI 800
A T ++ I + AR++ +D A NGV+H ID+V+
Sbjct: 1661 YATT--LSGHPLRFSEREGSIYINDFARVVSSDQEAVNGVLHFIDRVL 1706
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,069,794
Number of extensions: 628370
Number of successful extensions: 3566
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3523
Number of HSP's successfully gapped: 9
Length of query: 338
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 238
Effective length of database: 8,854,232
Effective search space: 2107307216
Effective search space used: 2107307216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001486
(1016 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 329 2e-87
>Sscrofa_Chr02
|| Length = 162569375
Score = 329 bits (166), Expect = 2e-87
Identities = 166/166 (100%)
Strand = Plus / Plus
Query: 551 ggaagtgctggactccctggtgagcaatgtcaacatcgagctgctcaacgccctccgcta 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143872606 ggaagtgctggactccctggtgagcaatgtcaacatcgagctgctcaacgccctccgcta 143872665
Query: 611 ccacatggtggacagacgggtcctgacggacgagctcaaacacggcatggccctcacctc 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143872666 ccacatggtggacagacgggtcctgacggacgagctcaaacacggcatggccctcacctc 143872725
Query: 671 catgtaccagaattccaacatccagatccaccactatcccaacggg 716
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143872726 catgtaccagaattccaacatccagatccaccactatcccaacggg 143872771
Score = 321 bits (162), Expect = 4e-85
Identities = 165/166 (99%)
Strand = Plus / Plus
Query: 387 gcagccctgccactctcgaacctatacgagaccctgggagtcgtgggatcaaccaccact 446
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 143872138 gcagccctgccactctcgaacctgtacgagaccctgggagtcgtgggatcaaccaccact 143872197
Query: 447 cagctgtacacggaccgcacggagaagctgaggcccgagatggaagggcccggcagcttc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143872198 cagctgtacacggaccgcacggagaagctgaggcccgagatggaagggcccggcagcttc 143872257
Query: 507 accatcttcgcccccagcaacgaggcctgggcttccttgccagcgg 552
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143872258 accatcttcgcccccagcaacgaggcctgggcttccttgccagcgg 143872303
Score = 295 bits (149), Expect = 2e-77
Identities = 149/149 (100%)
Strand = Plus / Plus
Query: 716 gatcgtgactgtcaactgtgctcggctgctgaaagccgaccaccacgcgaccaacggcgt 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143872989 gatcgtgactgtcaactgtgctcggctgctgaaagccgaccaccacgcgaccaacggcgt 143873048
Query: 776 ggtgcacctcatcgataaggtcatctccaccgtcaccaacaacatccagcagatcatcga 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143873049 ggtgcacctcatcgataaggtcatctccaccgtcaccaacaacatccagcagatcatcga 143873108
Query: 836 gatcgaggacaccttcgagacccttcggg 864
|||||||||||||||||||||||||||||
Sbjct: 143873109 gatcgaggacaccttcgagacccttcggg 143873137
Score = 212 bits (107), Expect = 3e-52
Identities = 137/143 (95%), Gaps = 3/143 (2%)
Strand = Plus / Plus
Query: 863 ggctgccgtggctgcatctgggctcaacaccctgctcgaaggggacggccagtacacact 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143875007 ggctgccgtggctgcatctgggctcaacaccctgctcgaaggggacggccagtacacact 143875066
Query: 923 cttggcccccacc-atgaggccttcgagaagatccctgctgagacc-tgaaacggat-ct 979
||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||| ||
Sbjct: 143875067 cttggccccgaccaatgaggccttcgagaagatccctgctgagaccttgaaccggatcct 143875126
Query: 980 aggtgacccagaggccctgagag 1002
||||||||||||||||||||||
Sbjct: 143875127 gggtgacccagaggccctgagag 143875149
Score = 198 bits (100), Expect = 4e-48
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 226 gccccaatgtgtgcgccgtgcagaagcttattggcaccaacaagaagtacttcaccaact 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143860786 gccccaatgtgtgcgccgtgcagaagcttattggcaccaacaagaagtacttcaccaact 143860845
Query: 286 gcaagcagtggtaccagcggaagatctgcggcaaatcaac 325
||||||||||||||||||||||||||||||||||||||||
Sbjct: 143860846 gcaagcagtggtaccagcggaagatctgcggcaaatcaac 143860885
Score = 121 bits (61), Expect = 8e-25
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 326 agtcatcagctacgagtgctgtccaggatatgagaaggtccccggagagaagggctgccc 385
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 143870709 agtcatcagctacgagtgctgtccaggatatgagaaggttcccggagagaagggctgccc 143870768
Query: 386 ggcag 390
|||||
Sbjct: 143870769 ggcag 143870773
Score = 103 bits (52), Expect = 2e-19
Identities = 52/52 (100%)
Strand = Plus / Plus
Query: 175 cgccctaccagctggtgctgcagcacagccgcctccggggtcggcagcacgg 226
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143856231 cgccctaccagctggtgctgcagcacagccgcctccggggtcggcagcacgg 143856282
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 20,549,964
Number of extensions: 83
Number of successful extensions: 83
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 7
Length of query: 1016
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 995
Effective length of database: 2,808,413,156
Effective search space: 2794371090220
Effective search space used: 2794371090220
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)