Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001492
(1178 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193325.1| complement C1q subcomponent subunit C [Bos t... 278 5e-75
Alignment gi|NP_001040064.1| complement C1q subcomponent subunit B precur... 125 7e-29
Alignment gi|NP_001092608.1| complement C1q tumor necrosis factor-related... 95 1e-19
Alignment gi|NP_001069314.1| complement C1q tumor necrosis factor-related... 94 2e-19
Alignment gi|NP_001014945.1| complement C1q subcomponent subunit A precur... 92 9e-19
Alignment gi|NP_777167.1| adiponectin [Bos taurus]. 86 8e-17
Alignment gi|XP_002689397.1| PREDICTED: C1q and tumor necrosis factor rel... 83 4e-16
Alignment gi|XP_589781.4| PREDICTED: C1q and tumor necrosis factor relate... 83 4e-16
Alignment gi|NP_777059.1| collagen alpha-1(X) chain precursor [Bos taurus]. 81 2e-15
Alignment gi|XP_002684997.1| PREDICTED: otolin-1-like [Bos taurus]. 78 1e-14
>ref|NP_001193325.1| complement C1q subcomponent subunit C [Bos taurus].
Length = 243
Score = 278 bits (712), Expect = 5e-75
Identities = 139/243 (57%), Positives = 157/243 (64%)
Frame = +3
Query: 288 MGSSSWPXXXXXXXXXXXXXXXEGQDNLRCHXXXXXXXXXXXXXKDGHDGLPGPKGEPGI 467
MGS +WP GQ C+ KDG+DGLPGPKGEPGI
Sbjct: 1 MGSGAWPLLVLNLLLLLLARPLRGQTETYCYGIPGMPGLPGAPGKDGYDGLPGPKGEPGI 60
Query: 468 PAIPGTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKQKHQSVF 647
PA PGTR YKQKHQSVF
Sbjct: 61 PAAPGTRGPKGQKGDPGTPGYPGKNGPMGTPGIPGAPGTMGPPGEPGVEGRYKQKHQSVF 120
Query: 648 SVTRQTAQYPAANSLVKFNNVITNPQGDYDINTGKFTCKVPGLYYFVYYTSHTANLCMLL 827
SVTRQT Q+P ANSLVKFN VITNPQG YD ++GKFTCKVPGLYYFV++TSHT+NLC+LL
Sbjct: 121 SVTRQTVQFPEANSLVKFNRVITNPQGHYDKDSGKFTCKVPGLYYFVFHTSHTSNLCVLL 180
Query: 828 YRNGFKVITFCDHMSNSKQVSSGGVLLRLQEGEQVWLGVNDYNGLVGMEGSDSIFSGFLL 1007
YR+GFKV TFCDHM+++KQVSSGGVLLRLQEG+QVWL VNDYNG+VGMEGSDS+FSGFLL
Sbjct: 181 YRSGFKVATFCDHMTSAKQVSSGGVLLRLQEGQQVWLAVNDYNGMVGMEGSDSVFSGFLL 240
Query: 1008 FPN 1016
FP+
Sbjct: 241 FPD 243
>ref|NP_001040064.1| complement C1q subcomponent subunit B precursor [Bos taurus].
Length = 247
Score = 125 bits (314), Expect = 7e-29
Identities = 68/201 (33%), Positives = 100/201 (49%), Gaps = 3/201 (1%)
Frame = +3
Query: 423 DGHDGLPGPKGEPGIPAIPGTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 602
DG G PG KGE G+P +
Sbjct: 44 DGKPGTPGTKGEKGLPGLVSHLNENGEKGDPGFPGMPGKVGPKGPIGPKGVPGPPGVRGP 103
Query: 603 XXXXXXYKQKHQSVFSVTRQTAQYPAANSLVKFNNVITNPQGDYDINTGKFTCKVPGLYY 782
YK + FS +R + ++F++VITN +Y + KFTCKVPGLY+
Sbjct: 104 KGESGDYKATQKIAFSASRTINHHQRQGQPIRFDHVITNANENYQARSSKFTCKVPGLYF 163
Query: 783 FVYYTSHTANLCMLLYRNGF---KVITFCDHMSNSKQVSSGGVLLRLQEGEQVWLGVNDY 953
F Y+ S LC+ L R KV+TFCD++ N+ QV++G ++L+L++ E V+L +
Sbjct: 164 FTYHASSRGQLCVDLMRGRAEPQKVVTFCDYVQNTFQVTTGSIVLKLEKDETVFLQATEK 223
Query: 954 NGLVGMEGSDSIFSGFLLFPN 1016
N LVG+EG++SIFSGF+LFP+
Sbjct: 224 NALVGIEGANSIFSGFMLFPD 244
>ref|NP_001092608.1| complement C1q tumor necrosis factor-related protein 5 [Bos taurus].
Length = 243
Score = 95.1 bits (235), Expect = 1e-19
Identities = 65/203 (32%), Positives = 95/203 (46%), Gaps = 6/203 (2%)
Frame = +3
Query: 420 KDGHDGLPGPKGEPGIPAIPGTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 599
+DG G PG KGE G P +PG R
Sbjct: 55 RDGAPGAPGEKGEGGRPGLPGPRGEPGPRGEAGPMGATGPAGECSVPP------------ 102
Query: 600 XXXXXXXYKQKHQSVFSVTRQTAQYPA-ANSLVKFNNVITNPQGDYDINTGKFTCKVPGL 776
+S FS R ++ P +++ + F+ V+ N QG YD TGKFTC+VPG+
Sbjct: 103 ------------RSAFSAKRSESRVPPPSDAPLPFDRVLVNEQGHYDAVTGKFTCQVPGV 150
Query: 777 YYF-VYYTSHTANLCMLLYRNGFKVITFCDHMSNSKQVS--SGGVLLRLQEGEQVW--LG 941
YYF V+ T + A+L L +NG + +F + + SGG ++RL+ +QVW +G
Sbjct: 151 YYFAVHATVYRASLQFDLVKNGESIASFFQFFGGWPKPASLSGGAMVRLEPEDQVWVQVG 210
Query: 942 VNDYNGLVGMEGSDSIFSGFLLF 1010
V DY G+ +DS FSGFL++
Sbjct: 211 VGDYIGIYASIKTDSTFSGFLVY 233
>ref|NP_001069314.1| complement C1q tumor necrosis factor-related protein 9 precursor [Bos
taurus].
Length = 333
Score = 94.4 bits (233), Expect = 2e-19
Identities = 47/119 (39%), Positives = 77/119 (64%), Gaps = 4/119 (3%)
Frame = +3
Query: 666 AQYPAANSLVKFNNVITNPQGDYDINTGKFTCKVPGLYYFVYY-TSHTANLCMLLYRNGF 842
+++P +++ +KF+ ++ N G YD+ TGKF C V G+YYF Y+ T + N+ + L +NG
Sbjct: 212 SKFPPSDTPIKFDRILYNEFGHYDVATGKFICHVAGVYYFTYHITVFSRNIQVSLVKNGA 271
Query: 843 KVITFCDHMSNSKQVSSGGVLLRLQEGEQVWL---GVNDYNGLVGMEGSDSIFSGFLLF 1010
KV+ D + S+ +SGG++L L+ G++VWL G +NGL + D+ F+GFLLF
Sbjct: 272 KVLHTKDGYTGSEDQASGGIVLPLKLGDEVWLQVTGGERFNGLFADKDDDTTFTGFLLF 330
>ref|NP_001014945.1| complement C1q subcomponent subunit A precursor [Bos taurus].
Length = 244
Score = 92.0 bits (227), Expect = 9e-19
Identities = 67/208 (32%), Positives = 95/208 (45%), Gaps = 9/208 (4%)
Frame = +3
Query: 420 KDGHDGLPGPKGEPGIPAIP-GTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 596
+ G GL G +GEPG PAI G R
Sbjct: 41 RPGRPGLKGERGEPGAPAIQTGIRGLKGDQGDPGPPGNPGRMGYPGPSGPMGPAGLPGLK 100
Query: 597 XXXXXXXXYKQKHQSVFSVTRQTAQYPAANSLVKFNNVITNPQGDYDINTGKFTCKVPGL 776
K + + FS + + +++V F VITN + Y NTG+F C VPG
Sbjct: 101 GTKGSPGNIKDQPRPAFSAVGPNSV--SRDNVVVFGKVITNQENVYQNNTGRFRCSVPGY 158
Query: 777 YYFVYYTSHTANLCMLL---YRNGFKVITFCDHMSNSK---QVSSGGVLLRLQEGEQVWL 938
YYF + ++C+ + R+ + + FCD NSK QV SGG +L LQ+G+QVW+
Sbjct: 159 YYFTFQVVSNWDICLSIRSSRRDQIQPLGFCDF--NSKGFFQVVSGGTVLHLQQGDQVWI 216
Query: 939 GVNDYNGLV--GMEGSDSIFSGFLLFPN 1016
+ G + G E +DSIFSGFL+FP+
Sbjct: 217 EKDPSKGRIYHGSE-ADSIFSGFLIFPS 243
>ref|NP_777167.1| adiponectin [Bos taurus].
Length = 240
Score = 85.5 bits (210), Expect = 8e-17
Identities = 60/204 (29%), Positives = 92/204 (45%), Gaps = 5/204 (2%)
Frame = +3
Query: 420 KDGHDGLPGPKGEPGIPAIPGTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 599
+DG DG PG KGE G + G +
Sbjct: 50 RDGRDGTPGEKGEKGDAGLLGPKGETGDVGMTGAEGPRGFPGTPGRKGEPGEAAYV---- 105
Query: 600 XXXXXXXYKQKHQSVFSVTRQTAQYPAANSLVKFNNVITNPQGDYDINTGKFTCKVPGLY 779
++S FSV +T + N ++F + N Q YD +TGKF C +PGLY
Sbjct: 106 -----------YRSAFSVGLET-RVTVPNVPIRFTKIFYNQQNHYDGSTGKFYCNIPGLY 153
Query: 780 YFVYY-TSHTANLCMLLYRNGFKVI-TFCDHMSNSKQVSSGGVLLRLQEGEQVWLGV--- 944
YF Y+ T + ++ + L++ V+ T+ + + +SG VLL L+ G+QVWL V
Sbjct: 154 YFSYHITVYMKDVKVSLFKKDKAVLFTYDQYQEKNVDQASGSVLLHLEVGDQVWLQVYEG 213
Query: 945 NDYNGLVGMEGSDSIFSGFLLFPN 1016
++NG+ +DS F+GFLL+ N
Sbjct: 214 ENHNGVYADNVNDSTFTGFLLYHN 237
>ref|XP_002689397.1| PREDICTED: C1q and tumor necrosis factor related protein 2-like [Bos
taurus].
Length = 328
Score = 83.2 bits (204), Expect = 4e-16
Identities = 49/130 (37%), Positives = 79/130 (60%), Gaps = 5/130 (3%)
Frame = +3
Query: 636 QSVFSVTRQTAQYPAANSLVKFNNVITNPQGDYDINTGKFTCKVPGLYYFVY-YTSHTAN 812
+S FSV T YP +KF+ ++ N G Y+ ++GKF C VPG+YYF Y T +
Sbjct: 192 KSAFSVA-VTKSYPRERLPIKFDKILMNEGGHYNASSGKFVCGVPGIYYFTYDITLANKH 250
Query: 813 LCMLLYRNG-FKVITFCDHMSNSKQVSSGGVLLRLQEGEQVWLGV--NDYNGL-VGMEGS 980
L + L NG +++ TF D + + V+SG +L L++G++VWL + ++ NGL +
Sbjct: 251 LAIGLVHNGQYRIRTF-DANTGNHDVASGSTILALRQGDEVWLQIFYSEQNGLFYDPYWT 309
Query: 981 DSIFSGFLLF 1010
DS+F+GFL++
Sbjct: 310 DSLFTGFLIY 319
>ref|XP_589781.4| PREDICTED: C1q and tumor necrosis factor related protein 2-like [Bos
taurus].
Length = 492
Score = 83.2 bits (204), Expect = 4e-16
Identities = 49/130 (37%), Positives = 79/130 (60%), Gaps = 5/130 (3%)
Frame = +3
Query: 636 QSVFSVTRQTAQYPAANSLVKFNNVITNPQGDYDINTGKFTCKVPGLYYFVY-YTSHTAN 812
+S FSV T YP +KF+ ++ N G Y+ ++GKF C VPG+YYF Y T +
Sbjct: 356 KSAFSVA-VTKSYPRERLPIKFDKILMNEGGHYNASSGKFVCGVPGIYYFTYDITLANKH 414
Query: 813 LCMLLYRNG-FKVITFCDHMSNSKQVSSGGVLLRLQEGEQVWLGV--NDYNGL-VGMEGS 980
L + L NG +++ TF D + + V+SG +L L++G++VWL + ++ NGL +
Sbjct: 415 LAIGLVHNGQYRIRTF-DANTGNHDVASGSTILALRQGDEVWLQIFYSEQNGLFYDPYWT 473
Query: 981 DSIFSGFLLF 1010
DS+F+GFL++
Sbjct: 474 DSLFTGFLIY 483
>ref|NP_777059.1| collagen alpha-1(X) chain precursor [Bos taurus].
Length = 674
Score = 80.9 bits (198), Expect = 2e-15
Identities = 49/129 (37%), Positives = 72/129 (55%), Gaps = 4/129 (3%)
Frame = +3
Query: 639 SVFSVTRQTAQYPAANSLVKFNNVITNPQGDYDINTGKFTCKVPGLYYFVYYTSHTANLC 818
S F+V A YPA + + F+ ++ N Q YD TG FTCK+PG+YYF Y+
Sbjct: 546 SAFTVILSKA-YPAIGTPIPFDKILYNKQQHYDPRTGIFTCKIPGIYYFSYHIHVKGTHA 604
Query: 819 ML-LYRNGFKVI-TFCDHMSNSKQVSSGGVLLRLQEGEQVWLGVND--YNGLVGMEGSDS 986
+ LY+NG V+ T+ +++ +SG ++ L E +QVWL + + NGL E S
Sbjct: 605 WVGLYKNGTPVMYTYDEYIKGYLDQASGSAVIDLTENDQVWLQLPNAGSNGLYSPEYVHS 664
Query: 987 IFSGFLLFP 1013
FSGFL+ P
Sbjct: 665 SFSGFLVAP 673
>ref|XP_002684997.1| PREDICTED: otolin-1-like [Bos taurus].
Length = 473
Score = 78.2 bits (191), Expect = 1e-14
Identities = 58/204 (28%), Positives = 90/204 (44%), Gaps = 6/204 (2%)
Frame = +3
Query: 423 DGHDGLPGPKGEPGIPAIPGTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 602
+G +G G G PG+P PG +
Sbjct: 267 NGMEGKSGSDGLPGVPGDPGVKGEKGELGIPGLMGPVGPKGELGSKGVRGSIGKKGSRGL 326
Query: 603 XXXXXXYKQKHQSVFSVTRQTAQYPAANSLVKFNNVITNPQGDYDINTGKFTCKVPGLYY 782
+ +S FS + +P N+ +KF+ V+ N QG+Y TGKF C +PG Y
Sbjct: 327 KGSKGEQARVPRSAFSAAL-SKPFPPPNAPIKFDKVLYNDQGNYSPVTGKFNCSIPGAYV 385
Query: 783 FVYYTS---HTANLCMLLY-RNGFKV-ITFCDHMSNSKQVSSGGVLLRLQEGEQVWLGVN 947
F Y+ + A + ++ + R FK T H + + V+L+L+ G+QVWL V+
Sbjct: 386 FSYHITVRGRPARISLVAWNRKQFKSRETLYGHEIDQTSLL---VILKLRAGDQVWLEVS 442
Query: 948 -DYNGLVGMEGSDSIFSGFLLFPN 1016
D+NG+ DSIF+GFLL+P+
Sbjct: 443 KDWNGVYVSAEDDSIFTGFLLYPD 466
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,971,852
Number of extensions: 1452442
Number of successful extensions: 14675
Number of sequences better than 1.0e-05: 38
Number of HSP's gapped: 13958
Number of HSP's successfully gapped: 41
Length of query: 392
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 288
Effective length of database: 14,240,222
Effective search space: 4101183936
Effective search space used: 4101183936
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001492
(1178 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_544508.2| PREDICTED: similar to complement component 1, q... 281 9e-76
Alignment gi|XP_544507.2| PREDICTED: similar to complement component 1, q... 133 4e-31
Alignment gi|XP_851299.1| PREDICTED: similar to adipocyte complement rela... 94 7e-20
Alignment gi|XP_535367.1| PREDICTED: similar to Complement C1q subcompone... 96 9e-20
Alignment gi|XP_853180.1| PREDICTED: similar to C1q and tumor necrosis fa... 91 2e-18
Alignment gi|XP_546267.2| PREDICTED: similar to C1q and tumor necrosis fa... 83 4e-16
Alignment gi|NP_001006645.1| adiponectin [Canis lupus familiaris]. 82 8e-16
Alignment gi|XP_854510.1| PREDICTED: similar to collagen, type X, alpha 1... 79 6e-15
Alignment gi|XP_862619.1| PREDICTED: similar to C1q and tumor necrosis fa... 77 2e-14
Alignment gi|XP_850892.1| PREDICTED: similar to C1q and tumor necrosis fa... 77 2e-14
>ref|XP_544508.2| PREDICTED: similar to complement component 1, q subcomponent, gamma
polypeptide [Canis familiaris].
Length = 245
Score = 281 bits (719), Expect = 9e-76
Identities = 144/245 (58%), Positives = 157/245 (64%)
Frame = +3
Query: 282 MDMGSSSWPXXXXXXXXXXXXXXXEGQDNLRCHXXXXXXXXXXXXXKDGHDGLPGPKGEP 461
MD G SSWP GQ + C+ KDGHDGLPGPKGEP
Sbjct: 1 MDTGPSSWPHLGLNLLLLLLALPLGGQASTGCYGIPGMPGLPGAPGKDGHDGLPGPKGEP 60
Query: 462 GIPAIPGTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKQKHQS 641
GIPAIPGTR YKQKHQS
Sbjct: 61 GIPAIPGTRGPKGQKGEPGTPGYPGKNGPMGTPGIPGVPGPVGPPGEPGEEGRYKQKHQS 120
Query: 642 VFSVTRQTAQYPAANSLVKFNNVITNPQGDYDINTGKFTCKVPGLYYFVYYTSHTANLCM 821
VF+VTRQTAQYP AN+LVKFN VITNPQGDYD +TGKFTCKVPGLYYFVY+TS T+NLC+
Sbjct: 121 VFTVTRQTAQYPLANNLVKFNTVITNPQGDYDTSTGKFTCKVPGLYYFVYHTSLTSNLCV 180
Query: 822 LLYRNGFKVITFCDHMSNSKQVSSGGVLLRLQEGEQVWLGVNDYNGLVGMEGSDSIFSGF 1001
LYR+G +V TFCDHMSNSKQVSSGGVLLRLQ GEQVWL VNDYNG+VG EGSDS+FSGF
Sbjct: 181 HLYRSGTRVTTFCDHMSNSKQVSSGGVLLRLQMGEQVWLAVNDYNGMVGTEGSDSVFSGF 240
Query: 1002 LLFPN 1016
LLFP+
Sbjct: 241 LLFPD 245
>ref|XP_544507.2| PREDICTED: similar to complement component 1, q subcomponent, beta
polypeptide precursor [Canis familiaris].
Length = 250
Score = 133 bits (334), Expect = 4e-31
Identities = 71/201 (35%), Positives = 102/201 (50%), Gaps = 3/201 (1%)
Frame = +3
Query: 423 DGHDGLPGPKGEPGIPAIPGTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 602
DG G PG KGE G+P + G
Sbjct: 47 DGTPGTPGTKGEKGLPGLAGDHGEFGEKGDPGIPGTPGKVGPKGPVGPKGSPGPPGARGA 106
Query: 603 XXXXXXYKQKHQSVFSVTRQTAQYPAANSLVKFNNVITNPQGDYDINTGKFTCKVPGLYY 782
YK + FS R + ++F++++TN +Y+ +GKFTC VPG+YY
Sbjct: 107 KGESGDYKATQKIAFSAMRTINIPLRRDQTIRFDHIVTNENRNYEPRSGKFTCNVPGIYY 166
Query: 783 FVYYTSHTANLCMLLYRNGF---KVITFCDHMSNSKQVSSGGVLLRLQEGEQVWLGVNDY 953
F Y+ S NLC+ + R KV+TFCD++ N+ QV++G V+L+L +GE V+L D
Sbjct: 167 FAYHASSRGNLCVNVMRGRERMQKVVTFCDYVQNTFQVTTGSVVLKLSQGENVYLQATDK 226
Query: 954 NGLVGMEGSDSIFSGFLLFPN 1016
N L+GMEG++SIFSGFLLFP+
Sbjct: 227 NSLLGMEGANSIFSGFLLFPD 247
>ref|XP_851299.1| PREDICTED: similar to adipocyte complement related protein of 30 kDa
[Canis familiaris].
Length = 333
Score = 94.0 bits (232), Expect(2) = 7e-20
Identities = 46/119 (38%), Positives = 76/119 (63%), Gaps = 4/119 (3%)
Frame = +3
Query: 666 AQYPAANSLVKFNNVITNPQGDYDINTGKFTCKVPGLYYFVYY-TSHTANLCMLLYRNGF 842
+++P ++ +KF+ ++ N YD+ TGKFTC V G+YYF Y+ T + N+ + L +NG
Sbjct: 212 SKFPTSDVPIKFDKILYNEFNHYDVATGKFTCHVAGVYYFTYHITVFSRNVQVSLVKNGV 271
Query: 843 KVITFCDHMSNSKQVSSGGVLLRLQEGEQVWL---GVNDYNGLVGMEGSDSIFSGFLLF 1010
K++ D +S+ +SGG++L L+ G++VW+ G +NGL E D+ F+GFLLF
Sbjct: 272 KILHTKDSYMSSEDQASGGIVLPLKLGDEVWMQVTGGERFNGLFADEDDDTTFTGFLLF 330
Score = 22.3 bits (46), Expect(2) = 7e-20
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Frame = +1
Query: 379 MGSLGYRACLGPPGRMGMMDCQGPRVSQESQLSLGHVDPRVRREIPANLAFLEKMVP--- 549
MG G R GP G+ G GP + + S G P +P + + K P
Sbjct: 109 MGEKGLRGETGPQGQKGDKGGVGPSGPEGLKGSTGPSGP---MGLPGPMGPIGKPGPKGD 165
Query: 550 WEPLGFQGLP 579
PLG QG P
Sbjct: 166 AGPLGPQGEP 175
>ref|XP_535367.1| PREDICTED: similar to Complement C1q subcomponent, A chain precursor
[Canis familiaris].
Length = 245
Score = 95.5 bits (236), Expect = 9e-20
Identities = 66/206 (32%), Positives = 98/206 (47%), Gaps = 9/206 (4%)
Frame = +3
Query: 426 GHDGLPGPKGEPGIPAIPGTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 605
G+ G PGP G G+P IPG R
Sbjct: 80 GNMGFPGPSGLMGLPGIPGRRGPKGNPGNI------------------------------ 109
Query: 606 XXXXXYKQKHQSVFSVTRQTAQYPAANSLVKFNNVITNPQGDYDINTGKFTCKVPGLYYF 785
+ + + FS R+ P ++V F+ VITN +G Y ++G+F C VPG YYF
Sbjct: 110 ------RDQPRPAFSAIRRNP--PTGGNVVIFDTVITNQEGPYQNHSGRFICAVPGYYYF 161
Query: 786 VYYTSHTANLCMLLYRNG----FKVITFCDHMSNSK---QVSSGGVLLRLQEGEQVWLGV 944
+ ++C+ + +G + + FCD +NSK QV SGG+ L+LQ+G+QVW+
Sbjct: 162 TFQVVSKWDICLSIVSSGRAQIRRSLGFCD--TNSKGIFQVVSGGMALQLQQGDQVWIEK 219
Query: 945 NDYNGLV--GMEGSDSIFSGFLLFPN 1016
+ G + G E +DSIFSGFL+FP+
Sbjct: 220 DPIKGRIYQGPE-ADSIFSGFLIFPS 244
>ref|XP_853180.1| PREDICTED: similar to C1q and tumor necrosis factor related protein 5
[Canis familiaris].
Length = 195
Score = 91.3 bits (225), Expect = 2e-18
Identities = 52/131 (39%), Positives = 80/131 (61%), Gaps = 6/131 (4%)
Frame = +3
Query: 636 QSVFSVTRQTAQYPA-ANSLVKFNNVITNPQGDYDINTGKFTCKVPGLYYF-VYYTSHTA 809
+S FS R ++ P +++ + F+ V+ N QG YD TGKFTC+VPG+YYF V+ T + A
Sbjct: 55 RSAFSAKRSESRVPPPSDAPLPFDRVLVNEQGHYDAATGKFTCQVPGVYYFAVHATVYRA 114
Query: 810 NLCMLLYRNGFKVITFCDHMSNSKQVS--SGGVLLRLQEGEQVW--LGVNDYNGLVGMEG 977
+L L +NG + +F + + SGG ++RL+ +QVW +GV DY G+
Sbjct: 115 SLQFDLVKNGESIASFFQFFGGWPKPASLSGGAMVRLEPEDQVWVQVGVGDYIGIYASIK 174
Query: 978 SDSIFSGFLLF 1010
+DS FSGFL++
Sbjct: 175 TDSTFSGFLVY 185
>ref|XP_546267.2| PREDICTED: similar to C1q and tumor necrosis factor related protein 2
[Canis familiaris].
Length = 344
Score = 83.2 bits (204), Expect = 4e-16
Identities = 49/130 (37%), Positives = 79/130 (60%), Gaps = 5/130 (3%)
Frame = +3
Query: 636 QSVFSVTRQTAQYPAANSLVKFNNVITNPQGDYDINTGKFTCKVPGLYYFVY-YTSHTAN 812
+S FSV T YP +KF+ ++ N G Y+ ++GKF C VPG+YYF Y T +
Sbjct: 208 KSAFSVA-VTKSYPRERLPIKFDKILMNEGGHYNASSGKFVCGVPGIYYFTYDITLANKH 266
Query: 813 LCMLLYRNG-FKVITFCDHMSNSKQVSSGGVLLRLQEGEQVWLGV--NDYNGL-VGMEGS 980
L + L NG +++ TF D + + V+SG +L L++G++VWL + ++ NGL +
Sbjct: 267 LAIGLVHNGQYRIRTF-DANTGNHDVASGSTILALKQGDEVWLQIFYSEQNGLFYDPYWT 325
Query: 981 DSIFSGFLLF 1010
DS+F+GFL++
Sbjct: 326 DSLFTGFLIY 335
>ref|NP_001006645.1| adiponectin [Canis lupus familiaris].
Length = 244
Score = 82.4 bits (202), Expect = 8e-16
Identities = 59/202 (29%), Positives = 88/202 (43%), Gaps = 5/202 (2%)
Frame = +3
Query: 420 KDGHDGLPGPKGEPGIPAIPGTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 599
+DG DG PG KGE G + G +
Sbjct: 55 RDGRDGTPGEKGEKGDAGLVGPKGDTGETGVTGVEGPRGFPGTPCRKGEPGESAYV---- 110
Query: 600 XXXXXXXYKQKHQSVFSVTRQTAQYPAANSLVKFNNVITNPQGDYDINTGKFTCKVPGLY 779
H+S FSV ++ + N ++F + N Q YD TGKF C +PGLY
Sbjct: 111 -----------HRSAFSVGLES-RITVPNVPIRFTKIFYNLQNHYDGTTGKFHCNIPGLY 158
Query: 780 YFVYY-TSHTANLCMLLYRNGFKVI-TFCDHMSNSKQVSSGGVLLRLQEGEQVWL---GV 944
YF Y+ T + ++ + LY+ ++ T+ + + +SG VLL L+ G+QVWL G
Sbjct: 159 YFSYHITVYLKDVKVSLYKKDKAMLFTYDQYQEKNVDQASGSVLLHLEVGDQVWLQVYGD 218
Query: 945 NDYNGLVGMEGSDSIFSGFLLF 1010
D G+ +DS F+GFLL+
Sbjct: 219 GDSYGIYADNVNDSTFTGFLLY 240
>ref|XP_854510.1| PREDICTED: similar to collagen, type X, alpha 1 precursor [Canis
familiaris].
Length = 676
Score = 79.3 bits (194), Expect = 6e-15
Identities = 48/129 (37%), Positives = 71/129 (55%), Gaps = 4/129 (3%)
Frame = +3
Query: 639 SVFSVTRQTAQYPAANSLVKFNNVITNPQGDYDINTGKFTCKVPGLYYFVYYTS-HTANL 815
S F+V A YPA + F+ ++ N Q YD TG FTC++PG YYF Y+ + ++
Sbjct: 548 SAFTVILSKA-YPAVGIPIPFDKILYNKQQHYDPRTGIFTCQIPGTYYFSYHVHVKSTHV 606
Query: 816 CMLLYRNGFKVI-TFCDHMSNSKQVSSGGVLLRLQEGEQVWLGV--NDYNGLVGMEGSDS 986
+ LY+NG V+ T+ ++ +SG +L L E +QVWL + NGL + S
Sbjct: 607 WVGLYKNGTPVMYTYDEYTKGYLDQASGSAVLELTENDQVWLQLPNTGSNGLYSSQYVHS 666
Query: 987 IFSGFLLFP 1013
FSGFL+ P
Sbjct: 667 SFSGFLVAP 675
>ref|XP_862619.1| PREDICTED: similar to C1q and tumor necrosis factor related protein 7
isoform 2 [Canis familiaris].
Length = 289
Score = 77.4 bits (189), Expect = 2e-14
Identities = 52/130 (40%), Positives = 74/130 (56%), Gaps = 5/130 (3%)
Frame = +3
Query: 636 QSVFSVTRQTAQYPAANSLVKFNNVITNPQGDYDINTGKFTCKVPGLYYFVY-YTSHTAN 812
+S FSV T+ YP + FN V+ N Y+ TGKF C PG+YYF Y T +
Sbjct: 147 KSAFSVGITTS-YPEERLPIIFNKVLFNEGEHYNPATGKFICAFPGIYYFSYDITLANKH 205
Query: 813 LCMLLYRNG-FKVITFCDHMSNSKQVSSGGVLLRLQEGEQVWLGV--NDYNGLVGMEG-S 980
L + L NG +++ TF D + + V+SG ++ LQ ++VWL + D NGL G +
Sbjct: 206 LAIGLVHNGQYRIKTF-DANTGNHDVASGSTVIYLQPEDEVWLEIFFTDQNGLFSDPGWA 264
Query: 981 DSIFSGFLLF 1010
DS+FSGFLL+
Sbjct: 265 DSLFSGFLLY 274
>ref|XP_850892.1| PREDICTED: similar to C1q and tumor necrosis factor related protein 7
isoform 1 [Canis familiaris].
Length = 296
Score = 77.4 bits (189), Expect = 2e-14
Identities = 52/130 (40%), Positives = 74/130 (56%), Gaps = 5/130 (3%)
Frame = +3
Query: 636 QSVFSVTRQTAQYPAANSLVKFNNVITNPQGDYDINTGKFTCKVPGLYYFVY-YTSHTAN 812
+S FSV T+ YP + FN V+ N Y+ TGKF C PG+YYF Y T +
Sbjct: 154 KSAFSVGITTS-YPEERLPIIFNKVLFNEGEHYNPATGKFICAFPGIYYFSYDITLANKH 212
Query: 813 LCMLLYRNG-FKVITFCDHMSNSKQVSSGGVLLRLQEGEQVWLGV--NDYNGLVGMEG-S 980
L + L NG +++ TF D + + V+SG ++ LQ ++VWL + D NGL G +
Sbjct: 213 LAIGLVHNGQYRIKTF-DANTGNHDVASGSTVIYLQPEDEVWLEIFFTDQNGLFSDPGWA 271
Query: 981 DSIFSGFLLF 1010
DS+FSGFLL+
Sbjct: 272 DSLFSGFLLY 281
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,962,627
Number of extensions: 1496565
Number of successful extensions: 13391
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 12752
Number of HSP's successfully gapped: 32
Length of query: 392
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 287
Effective length of database: 15,374,224
Effective search space: 4412402288
Effective search space used: 4412402288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001492
(1178 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_758957.2| complement C1q subcomponent subunit C precursor... 254 1e-67
Alignment gi|NP_001107573.1| complement C1q subcomponent subunit C precur... 254 1e-67
Alignment gi|NP_000482.3| complement C1q subcomponent subunit B precursor... 141 1e-33
Alignment gi|NP_056460.1| complement C1q tumor necrosis factor-related pr... 95 1e-19
Alignment gi|NP_848635.2| complement C1q tumor necrosis factor-related pr... 92 7e-19
Alignment gi|NP_001171271.1| adiponectin precursor [Homo sapiens]. 90 5e-18
Alignment gi|NP_004788.1| adiponectin precursor [Homo sapiens]. 90 5e-18
Alignment gi|NP_001007538.1| complement C1q tumor necrosis factor-related... 88 1e-17
Alignment gi|NP_057075.1| complement C1q subcomponent subunit A precursor... 85 1e-16
Alignment gi|NP_114114.2| complement C1q tumor necrosis factor-related pr... 83 1e-16
>ref|NP_758957.2| complement C1q subcomponent subunit C precursor [Homo sapiens].
Length = 245
Score = 254 bits (648), Expect = 1e-67
Identities = 130/245 (53%), Positives = 150/245 (61%)
Frame = +3
Query: 282 MDMGSSSWPXXXXXXXXXXXXXXXEGQDNLRCHXXXXXXXXXXXXXKDGHDGLPGPKGEP 461
MD+G SS P GQ N C+ KDG+DGLPGPKGEP
Sbjct: 1 MDVGPSSLPHLGLKLLLLLLLLPLRGQANTGCYGIPGMPGLPGAPGKDGYDGLPGPKGEP 60
Query: 462 GIPAIPGTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKQKHQS 641
GIPAIPG R YKQK QS
Sbjct: 61 GIPAIPGIRGPKGQKGEPGLPGHPGKNGPMGPPGMPGVPGPMGIPGEPGEEGRYKQKFQS 120
Query: 642 VFSVTRQTAQYPAANSLVKFNNVITNPQGDYDINTGKFTCKVPGLYYFVYYTSHTANLCM 821
VF+VTRQT Q PA NSL++FN V+TNPQGDYD +TGKFTCKVPGLYYFVY+ SHTANLC+
Sbjct: 121 VFTVTRQTHQPPAPNSLIRFNAVLTNPQGDYDTSTGKFTCKVPGLYYFVYHASHTANLCV 180
Query: 822 LLYRNGFKVITFCDHMSNSKQVSSGGVLLRLQEGEQVWLGVNDYNGLVGMEGSDSIFSGF 1001
LLYR+G KV+TFC H S + QV+SGGVLLRLQ GE+VWL VNDY +VG++GSDS+FSGF
Sbjct: 181 LLYRSGVKVVTFCGHTSKTNQVNSGGVLLRLQVGEEVWLAVNDYYDMVGIQGSDSVFSGF 240
Query: 1002 LLFPN 1016
LLFP+
Sbjct: 241 LLFPD 245
>ref|NP_001107573.1| complement C1q subcomponent subunit C precursor [Homo sapiens].
Length = 245
Score = 254 bits (648), Expect = 1e-67
Identities = 130/245 (53%), Positives = 150/245 (61%)
Frame = +3
Query: 282 MDMGSSSWPXXXXXXXXXXXXXXXEGQDNLRCHXXXXXXXXXXXXXKDGHDGLPGPKGEP 461
MD+G SS P GQ N C+ KDG+DGLPGPKGEP
Sbjct: 1 MDVGPSSLPHLGLKLLLLLLLLPLRGQANTGCYGIPGMPGLPGAPGKDGYDGLPGPKGEP 60
Query: 462 GIPAIPGTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKQKHQS 641
GIPAIPG R YKQK QS
Sbjct: 61 GIPAIPGIRGPKGQKGEPGLPGHPGKNGPMGPPGMPGVPGPMGIPGEPGEEGRYKQKFQS 120
Query: 642 VFSVTRQTAQYPAANSLVKFNNVITNPQGDYDINTGKFTCKVPGLYYFVYYTSHTANLCM 821
VF+VTRQT Q PA NSL++FN V+TNPQGDYD +TGKFTCKVPGLYYFVY+ SHTANLC+
Sbjct: 121 VFTVTRQTHQPPAPNSLIRFNAVLTNPQGDYDTSTGKFTCKVPGLYYFVYHASHTANLCV 180
Query: 822 LLYRNGFKVITFCDHMSNSKQVSSGGVLLRLQEGEQVWLGVNDYNGLVGMEGSDSIFSGF 1001
LLYR+G KV+TFC H S + QV+SGGVLLRLQ GE+VWL VNDY +VG++GSDS+FSGF
Sbjct: 181 LLYRSGVKVVTFCGHTSKTNQVNSGGVLLRLQVGEEVWLAVNDYYDMVGIQGSDSVFSGF 240
Query: 1002 LLFPN 1016
LLFP+
Sbjct: 241 LLFPD 245
>ref|NP_000482.3| complement C1q subcomponent subunit B precursor [Homo sapiens].
Length = 253
Score = 141 bits (356), Expect = 1e-33
Identities = 77/201 (38%), Positives = 105/201 (52%), Gaps = 3/201 (1%)
Frame = +3
Query: 423 DGHDGLPGPKGEPGIPAIPGTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 602
DG G PG KGE G+P + G
Sbjct: 50 DGQPGTPGIKGEKGLPGLAGDHGEFGEKGDPGIPGNPGKVGPKGPMGPKGGPGAPGAPGP 109
Query: 603 XXXXXXYKQKHQSVFSVTRQTAQYPAANSLVKFNNVITNPQGDYDINTGKFTCKVPGLYY 782
YK + FS TR + ++F++VITN +Y+ +GKFTCKVPGLYY
Sbjct: 110 KGESGDYKATQKIAFSATRTINVPLRRDQTIRFDHVITNMNNNYEPRSGKFTCKVPGLYY 169
Query: 783 FVYYTSHTANLCMLLYRN---GFKVITFCDHMSNSKQVSSGGVLLRLQEGEQVWLGVNDY 953
F Y+ S NLC+ L R KV+TFCD+ N+ QV++GG++L+L++GE V+L D
Sbjct: 170 FTYHASSRGNLCVNLMRGRERAQKVVTFCDYAYNTFQVTTGGMVLKLEQGENVFLQATDK 229
Query: 954 NGLVGMEGSDSIFSGFLLFPN 1016
N L+GMEG++SIFSGFLLFP+
Sbjct: 230 NSLLGMEGANSIFSGFLLFPD 250
>ref|NP_056460.1| complement C1q tumor necrosis factor-related protein 5 precursor
[Homo sapiens].
Length = 243
Score = 95.1 bits (235), Expect = 1e-19
Identities = 65/203 (32%), Positives = 95/203 (46%), Gaps = 6/203 (2%)
Frame = +3
Query: 420 KDGHDGLPGPKGEPGIPAIPGTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 599
+DG G PG KGE G P +PG R
Sbjct: 55 RDGAPGAPGEKGEGGRPGLPGPRGDPGPRGEAGPAGPTGPAGECSVPP------------ 102
Query: 600 XXXXXXXYKQKHQSVFSVTRQTAQYPA-ANSLVKFNNVITNPQGDYDINTGKFTCKVPGL 776
+S FS R ++ P +++ + F+ V+ N QG YD TGKFTC+VPG+
Sbjct: 103 ------------RSAFSAKRSESRVPPPSDAPLPFDRVLVNEQGHYDAVTGKFTCQVPGV 150
Query: 777 YYF-VYYTSHTANLCMLLYRNGFKVITFCDHMSNSKQVS--SGGVLLRLQEGEQVW--LG 941
YYF V+ T + A+L L +NG + +F + + SGG ++RL+ +QVW +G
Sbjct: 151 YYFAVHATVYRASLQFDLVKNGESIASFFQFFGGWPKPASLSGGAMVRLEPEDQVWVQVG 210
Query: 942 VNDYNGLVGMEGSDSIFSGFLLF 1010
V DY G+ +DS FSGFL++
Sbjct: 211 VGDYIGIYASIKTDSTFSGFLVY 233
>ref|NP_848635.2| complement C1q tumor necrosis factor-related protein 9A precursor
[Homo sapiens].
Length = 333
Score = 92.4 bits (228), Expect = 7e-19
Identities = 45/119 (37%), Positives = 76/119 (63%), Gaps = 4/119 (3%)
Frame = +3
Query: 666 AQYPAANSLVKFNNVITNPQGDYDINTGKFTCKVPGLYYFVYY-TSHTANLCMLLYRNGF 842
+++P+++ +KF+ ++ N YD GKFTC + G+YYF Y+ T + N+ + L +NG
Sbjct: 212 SKFPSSDMPIKFDKILYNEFNHYDTAAGKFTCHIAGVYYFTYHITVFSRNVQVSLVKNGV 271
Query: 843 KVITFCDHMSNSKQVSSGGVLLRLQEGEQVWL---GVNDYNGLVGMEGSDSIFSGFLLF 1010
K++ D +S+ +SGG++L+L+ G++VWL G +NGL E D+ F+GFLLF
Sbjct: 272 KILHTKDAYMSSEDQASGGIVLQLKLGDEVWLQVTGGERFNGLFADEDDDTTFTGFLLF 330
>ref|NP_001171271.1| adiponectin precursor [Homo sapiens].
Length = 244
Score = 89.7 bits (221), Expect = 5e-18
Identities = 61/202 (30%), Positives = 91/202 (45%), Gaps = 5/202 (2%)
Frame = +3
Query: 420 KDGHDGLPGPKGEPGIPAIPGTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 599
+DG DG PG KGE G P + G +
Sbjct: 55 RDGRDGTPGEKGEKGDPGLIGPKGDIGETGVPGAEGPRGFPGIQGRKGEPGEGAYV---- 110
Query: 600 XXXXXXXYKQKHQSVFSVTRQTAQYPAANSLVKFNNVITNPQGDYDINTGKFTCKVPGLY 779
++S FSV +T N ++F + N Q YD +TGKF C +PGLY
Sbjct: 111 -----------YRSAFSVGLET-YVTIPNMPIRFTKIFYNQQNHYDGSTGKFHCNIPGLY 158
Query: 780 YFVYY-TSHTANLCMLLYRNGFKVI-TFCDHMSNSKQVSSGGVLLRLQEGEQVWL---GV 944
YF Y+ T + ++ + L++ ++ T+ + N+ +SG VLL L+ G+QVWL G
Sbjct: 159 YFAYHITVYMKDVKVSLFKKDKAMLFTYDQYQENNVDQASGSVLLHLEVGDQVWLQVYGE 218
Query: 945 NDYNGLVGMEGSDSIFSGFLLF 1010
+ NGL +DS F+GFLL+
Sbjct: 219 GERNGLYADNDNDSTFTGFLLY 240
>ref|NP_004788.1| adiponectin precursor [Homo sapiens].
Length = 244
Score = 89.7 bits (221), Expect = 5e-18
Identities = 61/202 (30%), Positives = 91/202 (45%), Gaps = 5/202 (2%)
Frame = +3
Query: 420 KDGHDGLPGPKGEPGIPAIPGTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 599
+DG DG PG KGE G P + G +
Sbjct: 55 RDGRDGTPGEKGEKGDPGLIGPKGDIGETGVPGAEGPRGFPGIQGRKGEPGEGAYV---- 110
Query: 600 XXXXXXXYKQKHQSVFSVTRQTAQYPAANSLVKFNNVITNPQGDYDINTGKFTCKVPGLY 779
++S FSV +T N ++F + N Q YD +TGKF C +PGLY
Sbjct: 111 -----------YRSAFSVGLET-YVTIPNMPIRFTKIFYNQQNHYDGSTGKFHCNIPGLY 158
Query: 780 YFVYY-TSHTANLCMLLYRNGFKVI-TFCDHMSNSKQVSSGGVLLRLQEGEQVWL---GV 944
YF Y+ T + ++ + L++ ++ T+ + N+ +SG VLL L+ G+QVWL G
Sbjct: 159 YFAYHITVYMKDVKVSLFKKDKAMLFTYDQYQENNVDQASGSVLLHLEVGDQVWLQVYGE 218
Query: 945 NDYNGLVGMEGSDSIFSGFLLF 1010
+ NGL +DS F+GFLL+
Sbjct: 219 GERNGLYADNDNDSTFTGFLLY 240
>ref|NP_001007538.1| complement C1q tumor necrosis factor-related protein 9B precursor
[Homo sapiens].
Length = 333
Score = 88.2 bits (217), Expect = 1e-17
Identities = 43/119 (36%), Positives = 75/119 (63%), Gaps = 4/119 (3%)
Frame = +3
Query: 666 AQYPAANSLVKFNNVITNPQGDYDINTGKFTCKVPGLYYFVYY-TSHTANLCMLLYRNGF 842
+++P+++ +KF+ ++ N YD GKFTC + G+YYF Y+ T + N+ + L +NG
Sbjct: 212 SKFPSSDVPIKFDKILYNEFNHYDTAVGKFTCHIAGVYYFTYHITVFSRNVQVSLVKNGV 271
Query: 843 KVITFCDHMSNSKQVSSGGVLLRLQEGEQVWL---GVNDYNGLVGMEGSDSIFSGFLLF 1010
K++ D +S+ +SG ++L+L+ G+++WL G +NGL E D+ F+GFLLF
Sbjct: 272 KILHTRDAYVSSEDQASGSIVLQLKLGDEMWLQVTGGERFNGLFADEDDDTTFTGFLLF 330
>ref|NP_057075.1| complement C1q subcomponent subunit A precursor [Homo sapiens].
Length = 245
Score = 85.1 bits (209), Expect = 1e-16
Identities = 60/205 (29%), Positives = 92/205 (44%), Gaps = 8/205 (3%)
Frame = +3
Query: 426 GHDGLPGPKGEPGIPAI-PGTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 602
G GL G +GEPG P I G +
Sbjct: 43 GRPGLKGEQGEPGAPGIRTGIQGLKGDQGEPGPSGNPGKVGYPGPSGPLGARGIPGIKGT 102
Query: 603 XXXXXXYKQKHQSVFSVTRQTAQYPAANSLVKFNNVITNPQGDYDINTGKFTCKVPGLYY 782
K + + FS R+ P ++V F+ VITN + Y ++G+F C VPG YY
Sbjct: 103 KGSPGNIKDQPRPAFSAIRRNP--PMGGNVVIFDTVITNQEEPYQNHSGRFVCTVPGYYY 160
Query: 783 FVYYTSHTANLCMLLYRNG----FKVITFCDHMSNSK-QVSSGGVLLRLQEGEQVWLGVN 947
F + +C+ + + + + FCD + QV SGG++L+LQ+G+QVW+ +
Sbjct: 161 FTFQVLSQWEICLSIVSSSRGQVRRSLGFCDTTNKGLFQVVSGGMVLQLQQGDQVWVEKD 220
Query: 948 DYNGLV--GMEGSDSIFSGFLLFPN 1016
G + G E +DS+FSGFL+FP+
Sbjct: 221 PKKGHIYQGSE-ADSVFSGFLIFPS 244
>ref|NP_114114.2| complement C1q tumor necrosis factor-related protein 2 [Homo
sapiens].
Length = 330
Score = 83.2 bits (204), Expect(2) = 1e-16
Identities = 49/130 (37%), Positives = 79/130 (60%), Gaps = 5/130 (3%)
Frame = +3
Query: 636 QSVFSVTRQTAQYPAANSLVKFNNVITNPQGDYDINTGKFTCKVPGLYYFVY-YTSHTAN 812
+S FSV T YP +KF+ ++ N G Y+ ++GKF C VPG+YYF Y T +
Sbjct: 194 KSAFSVA-VTKSYPRERLPIKFDKILMNEGGHYNASSGKFVCGVPGIYYFTYDITLANKH 252
Query: 813 LCMLLYRNG-FKVITFCDHMSNSKQVSSGGVLLRLQEGEQVWLGV--NDYNGL-VGMEGS 980
L + L NG +++ TF D + + V+SG +L L++G++VWL + ++ NGL +
Sbjct: 253 LAIGLVHNGQYRIRTF-DANTGNHDVASGSTILALKQGDEVWLQIFYSEQNGLFYDPYWT 311
Query: 981 DSIFSGFLLF 1010
DS+F+GFL++
Sbjct: 312 DSLFTGFLIY 321
Score = 21.9 bits (45), Expect(2) = 1e-16
Identities = 17/57 (29%), Positives = 20/57 (35%)
Frame = +1
Query: 409 GPPGRMGMMDCQGPRVSQESQLSLGHVDPRVRREIPANLAFLEKMVPWEPLGFQGLP 579
GPPGR G GP+ + G P+ P K P G GLP
Sbjct: 127 GPPGRTGNRGKPGPKGKAGAIGRAGPRGPKGVNGTPGKHGTPGKKGPKGKKGEPGLP 183
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,930,553
Number of extensions: 1457577
Number of successful extensions: 13791
Number of sequences better than 1.0e-05: 30
Number of HSP's gapped: 13052
Number of HSP's successfully gapped: 36
Length of query: 392
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 287
Effective length of database: 14,835,944
Effective search space: 4257915928
Effective search space used: 4257915928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001492
(1178 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031600.2| complement C1q subcomponent subunit C precursor... 249 2e-66
Alignment gi|NP_033907.1| complement C1q subcomponent subunit B precursor... 130 2e-30
Alignment gi|NP_001177248.1| complement C1q tumor necrosis factor-related... 97 2e-20
Alignment gi|NP_001035722.1| complement C1q tumor necrosis factor-related... 97 2e-20
Alignment gi|NP_001035721.1| complement C1q tumor necrosis factor-related... 97 2e-20
Alignment gi|NP_001177242.1| complement C1q tumor necrosis factor-related... 97 2e-20
Alignment gi|NP_663588.2| complement C1q tumor necrosis factor-related pr... 97 2e-20
Alignment gi|NP_898998.2| complement C1q tumor necrosis factor-related pr... 91 1e-18
Alignment gi|NP_081255.1| complement C1q tumor necrosis factor-related pr... 86 5e-18
Alignment gi|NP_033735.3| adiponectin [Mus musculus]. 87 2e-17
>ref|NP_031600.2| complement C1q subcomponent subunit C precursor [Mus musculus].
Length = 246
Score = 249 bits (637), Expect = 2e-66
Identities = 122/199 (61%), Positives = 141/199 (70%)
Frame = +3
Query: 420 KDGHDGLPGPKGEPGIPAIPGTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 599
KDGHDGL GPKGEPGIPA+PGTR
Sbjct: 48 KDGHDGLQGPKGEPGIPAVPGTRGPKGQKGEPGMPGHRGKNGPRGTSGLPGDPGPRGPPG 107
Query: 600 XXXXXXXYKQKHQSVFSVTRQTAQYPAANSLVKFNNVITNPQGDYDINTGKFTCKVPGLY 779
YKQKHQSVF+VTRQT QYP AN+LV+FN+V+TNPQG Y+ +TGKFTC+VPGLY
Sbjct: 108 EPGVEGRYKQKHQSVFTVTRQTTQYPEANALVRFNSVVTNPQGHYNPSTGKFTCEVPGLY 167
Query: 780 YFVYYTSHTANLCMLLYRNGFKVITFCDHMSNSKQVSSGGVLLRLQEGEQVWLGVNDYNG 959
YFVYYTSHTANLC+ L N +V +FCDHM NSKQVSSGGVLLRLQ G++VWL VNDYNG
Sbjct: 168 YFVYYTSHTANLCVHLNLNLARVASFCDHMFNSKQVSSGGVLLRLQRGDEVWLSVNDYNG 227
Query: 960 LVGMEGSDSIFSGFLLFPN 1016
+VG+EGS+S+FSGFLLFP+
Sbjct: 228 MVGIEGSNSVFSGFLLFPD 246
>ref|NP_033907.1| complement C1q subcomponent subunit B precursor [Mus musculus].
Length = 253
Score = 130 bits (327), Expect = 2e-30
Identities = 74/203 (36%), Positives = 99/203 (48%), Gaps = 5/203 (2%)
Frame = +3
Query: 423 DGHDGLPGPKGEPGIPAIPGTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 602
DG G PG KGE G+P + G
Sbjct: 48 DGQPGTPGIKGEKGLPGLAGDLGEFGEKGDPGIPGTPGKVGPKGPVGPKGTPGPSGPRGP 107
Query: 603 XXXXXXYKQKHQSVFSVTRQTAQYPAANSLVKFNNVITNPQGDYDINTGKFTCKVPGLYY 782
Y + FS R N +++F VITN +Y+ GKFTCKVPGLYY
Sbjct: 108 KGDSGDYGATQKVAFSALRTINSPLRPNQVIRFEKVITNANENYEPRNGKFTCKVPGLYY 167
Query: 783 FVYYTSHTANLCMLLYRNGF-----KVITFCDHMSNSKQVSSGGVLLRLQEGEQVWLGVN 947
F Y+ S NLC+ L R KV+TFCD+ N+ QV++GGV+L+L++ E V L
Sbjct: 168 FTYHASSRGNLCVNLVRGRDRDSMQKVVTFCDYAQNTFQVTTGGVVLKLEQEEVVHLQAT 227
Query: 948 DYNGLVGMEGSDSIFSGFLLFPN 1016
D N L+G+EG++SIF+GFLLFP+
Sbjct: 228 DKNSLLGIEGANSIFTGFLLFPD 250
>ref|NP_001177248.1| complement C1q tumor necrosis factor-related protein 5 precursor [Mus
musculus].
Length = 243
Score = 97.4 bits (241), Expect = 2e-20
Identities = 66/203 (32%), Positives = 96/203 (47%), Gaps = 6/203 (2%)
Frame = +3
Query: 420 KDGHDGLPGPKGEPGIPAIPGTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 599
+DG G PG KGE G P +PG R
Sbjct: 55 RDGAPGAPGEKGEGGRPGLPGPRGEPGPRGEAGPMGAIGPAGECSVPP------------ 102
Query: 600 XXXXXXXYKQKHQSVFSVTRQTAQYPA-ANSLVKFNNVITNPQGDYDINTGKFTCKVPGL 776
+S FS R ++ P A++ + F+ V+ N QG YD TGKFTC+VPG+
Sbjct: 103 ------------RSAFSAKRSESRVPPPADTPLPFDRVLLNEQGHYDPTTGKFTCQVPGV 150
Query: 777 YYF-VYYTSHTANLCMLLYRNGFKVITFCDHMSNSKQVS--SGGVLLRLQEGEQVW--LG 941
YYF V+ T + A+L L +NG + +F + + + SGG ++RL+ +QVW +G
Sbjct: 151 YYFAVHATVYRASLQFDLVKNGQSIASFFQYFGGWPKPASLSGGAMVRLEPEDQVWVQVG 210
Query: 942 VNDYNGLVGMEGSDSIFSGFLLF 1010
V DY G+ +DS FSGFL++
Sbjct: 211 VGDYIGIYASIKTDSTFSGFLVY 233
>ref|NP_001035722.1| complement C1q tumor necrosis factor-related protein 5 precursor [Mus
musculus].
Length = 243
Score = 97.4 bits (241), Expect = 2e-20
Identities = 66/203 (32%), Positives = 96/203 (47%), Gaps = 6/203 (2%)
Frame = +3
Query: 420 KDGHDGLPGPKGEPGIPAIPGTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 599
+DG G PG KGE G P +PG R
Sbjct: 55 RDGAPGAPGEKGEGGRPGLPGPRGEPGPRGEAGPMGAIGPAGECSVPP------------ 102
Query: 600 XXXXXXXYKQKHQSVFSVTRQTAQYPA-ANSLVKFNNVITNPQGDYDINTGKFTCKVPGL 776
+S FS R ++ P A++ + F+ V+ N QG YD TGKFTC+VPG+
Sbjct: 103 ------------RSAFSAKRSESRVPPPADTPLPFDRVLLNEQGHYDPTTGKFTCQVPGV 150
Query: 777 YYF-VYYTSHTANLCMLLYRNGFKVITFCDHMSNSKQVS--SGGVLLRLQEGEQVW--LG 941
YYF V+ T + A+L L +NG + +F + + + SGG ++RL+ +QVW +G
Sbjct: 151 YYFAVHATVYRASLQFDLVKNGQSIASFFQYFGGWPKPASLSGGAMVRLEPEDQVWVQVG 210
Query: 942 VNDYNGLVGMEGSDSIFSGFLLF 1010
V DY G+ +DS FSGFL++
Sbjct: 211 VGDYIGIYASIKTDSTFSGFLVY 233
>ref|NP_001035721.1| complement C1q tumor necrosis factor-related protein 5 precursor [Mus
musculus].
Length = 243
Score = 97.4 bits (241), Expect = 2e-20
Identities = 66/203 (32%), Positives = 96/203 (47%), Gaps = 6/203 (2%)
Frame = +3
Query: 420 KDGHDGLPGPKGEPGIPAIPGTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 599
+DG G PG KGE G P +PG R
Sbjct: 55 RDGAPGAPGEKGEGGRPGLPGPRGEPGPRGEAGPMGAIGPAGECSVPP------------ 102
Query: 600 XXXXXXXYKQKHQSVFSVTRQTAQYPA-ANSLVKFNNVITNPQGDYDINTGKFTCKVPGL 776
+S FS R ++ P A++ + F+ V+ N QG YD TGKFTC+VPG+
Sbjct: 103 ------------RSAFSAKRSESRVPPPADTPLPFDRVLLNEQGHYDPTTGKFTCQVPGV 150
Query: 777 YYF-VYYTSHTANLCMLLYRNGFKVITFCDHMSNSKQVS--SGGVLLRLQEGEQVW--LG 941
YYF V+ T + A+L L +NG + +F + + + SGG ++RL+ +QVW +G
Sbjct: 151 YYFAVHATVYRASLQFDLVKNGQSIASFFQYFGGWPKPASLSGGAMVRLEPEDQVWVQVG 210
Query: 942 VNDYNGLVGMEGSDSIFSGFLLF 1010
V DY G+ +DS FSGFL++
Sbjct: 211 VGDYIGIYASIKTDSTFSGFLVY 233
>ref|NP_001177242.1| complement C1q tumor necrosis factor-related protein 5 precursor [Mus
musculus].
Length = 243
Score = 97.4 bits (241), Expect = 2e-20
Identities = 66/203 (32%), Positives = 96/203 (47%), Gaps = 6/203 (2%)
Frame = +3
Query: 420 KDGHDGLPGPKGEPGIPAIPGTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 599
+DG G PG KGE G P +PG R
Sbjct: 55 RDGAPGAPGEKGEGGRPGLPGPRGEPGPRGEAGPMGAIGPAGECSVPP------------ 102
Query: 600 XXXXXXXYKQKHQSVFSVTRQTAQYPA-ANSLVKFNNVITNPQGDYDINTGKFTCKVPGL 776
+S FS R ++ P A++ + F+ V+ N QG YD TGKFTC+VPG+
Sbjct: 103 ------------RSAFSAKRSESRVPPPADTPLPFDRVLLNEQGHYDPTTGKFTCQVPGV 150
Query: 777 YYF-VYYTSHTANLCMLLYRNGFKVITFCDHMSNSKQVS--SGGVLLRLQEGEQVW--LG 941
YYF V+ T + A+L L +NG + +F + + + SGG ++RL+ +QVW +G
Sbjct: 151 YYFAVHATVYRASLQFDLVKNGQSIASFFQYFGGWPKPASLSGGAMVRLEPEDQVWVQVG 210
Query: 942 VNDYNGLVGMEGSDSIFSGFLLF 1010
V DY G+ +DS FSGFL++
Sbjct: 211 VGDYIGIYASIKTDSTFSGFLVY 233
>ref|NP_663588.2| complement C1q tumor necrosis factor-related protein 5 precursor [Mus
musculus].
Length = 243
Score = 97.4 bits (241), Expect = 2e-20
Identities = 66/203 (32%), Positives = 96/203 (47%), Gaps = 6/203 (2%)
Frame = +3
Query: 420 KDGHDGLPGPKGEPGIPAIPGTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 599
+DG G PG KGE G P +PG R
Sbjct: 55 RDGAPGAPGEKGEGGRPGLPGPRGEPGPRGEAGPMGAIGPAGECSVPP------------ 102
Query: 600 XXXXXXXYKQKHQSVFSVTRQTAQYPA-ANSLVKFNNVITNPQGDYDINTGKFTCKVPGL 776
+S FS R ++ P A++ + F+ V+ N QG YD TGKFTC+VPG+
Sbjct: 103 ------------RSAFSAKRSESRVPPPADTPLPFDRVLLNEQGHYDPTTGKFTCQVPGV 150
Query: 777 YYF-VYYTSHTANLCMLLYRNGFKVITFCDHMSNSKQVS--SGGVLLRLQEGEQVW--LG 941
YYF V+ T + A+L L +NG + +F + + + SGG ++RL+ +QVW +G
Sbjct: 151 YYFAVHATVYRASLQFDLVKNGQSIASFFQYFGGWPKPASLSGGAMVRLEPEDQVWVQVG 210
Query: 942 VNDYNGLVGMEGSDSIFSGFLLF 1010
V DY G+ +DS FSGFL++
Sbjct: 211 VGDYIGIYASIKTDSTFSGFLVY 233
>ref|NP_898998.2| complement C1q tumor necrosis factor-related protein 9 precursor [Mus
musculus].
Length = 333
Score = 91.3 bits (225), Expect = 1e-18
Identities = 45/119 (37%), Positives = 75/119 (63%), Gaps = 4/119 (3%)
Frame = +3
Query: 666 AQYPAANSLVKFNNVITNPQGDYDINTGKFTCKVPGLYYFVYY-TSHTANLCMLLYRNGF 842
+++P ++ +KF+ ++ N Y++ TGKFTC V G+YYF Y+ T + N+ + L +NG
Sbjct: 212 SKFPPPDAPIKFDKILYNELNHYNVATGKFTCHVAGVYYFTYHITVFSRNVQVSLVKNGV 271
Query: 843 KVITFCDHMSNSKQVSSGGVLLRLQEGEQVWL---GVNDYNGLVGMEGSDSIFSGFLLF 1010
KV+ D +S+ +SGG++ L+ G++VW+ G +NGL E D+ F+GFLLF
Sbjct: 272 KVLHTKDSYMSSEDQASGGIVQELKLGDEVWMQVTGGERFNGLFADEDDDTTFTGFLLF 330
>ref|NP_081255.1| complement C1q tumor necrosis factor-related protein 2 precursor [Mus
musculus].
Length = 294
Score = 85.9 bits (211), Expect(2) = 5e-18
Identities = 51/134 (38%), Positives = 81/134 (60%), Gaps = 5/134 (3%)
Frame = +3
Query: 636 QSVFSVTRQTAQYPAANSLVKFNNVITNPQGDYDINTGKFTCKVPGLYYFVY-YTSHTAN 812
+S FSV T YP +KF+ ++ N G Y+ ++GKF C VPG+YYF Y T +
Sbjct: 158 KSAFSVA-VTKSYPRERLPIKFDKILMNEGGHYNASSGKFVCSVPGIYYFTYDITLANKH 216
Query: 813 LCMLLYRNG-FKVITFCDHMSNSKQVSSGGVLLRLQEGEQVWLGV--NDYNGL-VGMEGS 980
L + L NG +++ TF D + + V+SG +L L+EG++VWL + ++ NGL +
Sbjct: 217 LAIGLVHNGQYRIRTF-DANTGNHDVASGSTILALKEGDEVWLQIFYSEQNGLFYDPYWT 275
Query: 981 DSIFSGFLLFPN*G 1022
DS+F+GFL++ + G
Sbjct: 276 DSLFTGFLIYADQG 289
Score = 23.9 bits (50), Expect(2) = 5e-18
Identities = 18/57 (31%), Positives = 21/57 (36%)
Frame = +1
Query: 409 GPPGRMGMMDCQGPRVSQESQLSLGHVDPRVRREIPANLAFLEKMVPWEPLGFQGLP 579
GPPGR G QGP+ + G P+ P K P G GLP
Sbjct: 91 GPPGRTGNRGKQGPKGKAGAIGRAGPRGPKGVSGTPGKHGTPGKKGPKGKKGEPGLP 147
>ref|NP_033735.3| adiponectin [Mus musculus].
Length = 247
Score = 87.4 bits (215), Expect = 2e-17
Identities = 61/202 (30%), Positives = 91/202 (45%), Gaps = 5/202 (2%)
Frame = +3
Query: 420 KDGHDGLPGPKGEPGIPAIPGTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 599
+DG DG PG KGE G + G +
Sbjct: 58 RDGRDGTPGEKGEKGDAGLLGPKGETGDVGMTGAEGPRGFPGTPGRKGEPGEAAYV---- 113
Query: 600 XXXXXXXYKQKHQSVFSVTRQTAQYPAANSLVKFNNVITNPQGDYDINTGKFTCKVPGLY 779
++S FSV +T + N ++F + N Q YD +TGKF C +PGLY
Sbjct: 114 -----------YRSAFSVGLET-RVTVPNVPIRFTKIFYNQQNHYDGSTGKFYCNIPGLY 161
Query: 780 YFVYY-TSHTANLCMLLYRNGFKVI-TFCDHMSNSKQVSSGGVLLRLQEGEQVWL---GV 944
YF Y+ T + ++ + L++ V+ T+ + + +SG VLL L+ G+QVWL G
Sbjct: 162 YFSYHITVYMKDVKVSLFKKDKAVLFTYDQYQEKNVDQASGSVLLHLEVGDQVWLQVYGD 221
Query: 945 NDYNGLVGMEGSDSIFSGFLLF 1010
D+NGL +DS F+GFLL+
Sbjct: 222 GDHNGLYADNVNDSTFTGFLLY 243
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,242,261
Number of extensions: 1199619
Number of successful extensions: 10975
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 10436
Number of HSP's successfully gapped: 33
Length of query: 392
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 289
Effective length of database: 12,523,851
Effective search space: 3619392939
Effective search space used: 3619392939
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001492
(1178 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127735.2| PREDICTED: complement C1q subcomponent subun... 340 7e-94
Alignment gi|XP_003127737.1| PREDICTED: complement C1q subcomponent subun... 122 5e-28
Alignment gi|XP_003129988.1| PREDICTED: complement C1q tumor necrosis fac... 95 7e-20
Alignment gi|NP_001003924.1| complement C1q subcomponent subunit A precur... 95 7e-20
Alignment gi|XP_003130932.1| PREDICTED: complement C1q tumor necrosis fac... 93 3e-19
Alignment gi|NP_999535.1| adiponectin [Sus scrofa]. 87 2e-17
Alignment gi|NP_001136301.1| complement C1q tumor necrosis factor-related... 83 1e-16
Alignment gi|XP_003358707.1| PREDICTED: otolin-1-like [Sus scrofa]. 80 2e-15
Alignment gi|XP_003358706.1| PREDICTED: otolin-1-like [Sus scrofa]. 80 2e-15
Alignment gi|NP_001005153.1| collagen alpha-1(X) chain [Sus scrofa]. 80 3e-15
>ref|XP_003127735.2| PREDICTED: complement C1q subcomponent subunit C isoform 1 [Sus
scrofa].
Length = 245
Score = 340 bits (873), Expect = 7e-94
Identities = 173/245 (70%), Positives = 173/245 (70%)
Frame = +3
Query: 282 MDMGSSSWPXXXXXXXXXXXXXXXEGQDNLRCHXXXXXXXXXXXXXKDGHDGLPGPKGEP 461
MDMGSSSWP EGQDNLRCH KDGHDGLPGPKGEP
Sbjct: 1 MDMGSSSWPLLVLNLLLLLLALPLEGQDNLRCHGIPGIPGLPGAPGKDGHDGLPGPKGEP 60
Query: 462 GIPAIPGTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKQKHQS 641
GIPAIPGTR YKQKHQS
Sbjct: 61 GIPAIPGTRGPKGEKGDPGKPGLPGKNGPMGTPGIPGTPGVMGPRGEPGEEGRYKQKHQS 120
Query: 642 VFSVTRQTAQYPAANSLVKFNNVITNPQGDYDINTGKFTCKVPGLYYFVYYTSHTANLCM 821
VFSVTRQTAQYPAANSLVKFNNVITNPQGDYDINTGKFTCKVPGLYYFVYYTSHTANLCM
Sbjct: 121 VFSVTRQTAQYPAANSLVKFNNVITNPQGDYDINTGKFTCKVPGLYYFVYYTSHTANLCM 180
Query: 822 LLYRNGFKVITFCDHMSNSKQVSSGGVLLRLQEGEQVWLGVNDYNGLVGMEGSDSIFSGF 1001
LLYRNGFKVITFCDHMSNSKQVSSGGVLLRLQEGEQVWLGVNDYNGLVGMEGSDSIFSGF
Sbjct: 181 LLYRNGFKVITFCDHMSNSKQVSSGGVLLRLQEGEQVWLGVNDYNGLVGMEGSDSIFSGF 240
Query: 1002 LLFPN 1016
LLFPN
Sbjct: 241 LLFPN 245
>ref|XP_003127737.1| PREDICTED: complement C1q subcomponent subunit B-like [Sus scrofa].
Length = 246
Score = 122 bits (305), Expect = 5e-28
Identities = 72/209 (34%), Positives = 103/209 (49%), Gaps = 12/209 (5%)
Frame = +3
Query: 426 GHDGLPGP---------KGEPGIPAIPGTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 578
G GLPG KG+PGIP IPG
Sbjct: 53 GEKGLPGQVRDHNEVGEKGDPGIPGIPGK------------------VGPKGPIGPKGTP 94
Query: 579 XXXXXXXXXXXXXXYKQKHQSVFSVTRQTAQYPAANSLVKFNNVITNPQGDYDINTGKFT 758
YK + FS R + + ++F+ VITN +Y+ +GKFT
Sbjct: 95 GPPGARGPKGESGDYKATQKIAFSAKRTINTHLRPDQAIRFDQVITNANENYESRSGKFT 154
Query: 759 CKVPGLYYFVYYTSHTANLCMLLYRNG---FKVITFCDHMSNSKQVSSGGVLLRLQEGEQ 929
CKVPGLYYF Y+ S NLC+ L R KV+TFCD + N+ QV++G ++L+L+ E
Sbjct: 155 CKVPGLYYFTYHASSRGNLCVNLMRGREQVRKVVTFCDQVQNTFQVTTGSIVLKLEVEET 214
Query: 930 VWLGVNDYNGLVGMEGSDSIFSGFLLFPN 1016
V+L + + L+G++G+++IFSGFLLFP+
Sbjct: 215 VFLQATEKSSLLGIDGANTIFSGFLLFPD 243
>ref|XP_003129988.1| PREDICTED: complement C1q tumor necrosis factor-related protein
5-like [Sus scrofa].
Length = 243
Score = 95.1 bits (235), Expect = 7e-20
Identities = 65/203 (32%), Positives = 95/203 (46%), Gaps = 6/203 (2%)
Frame = +3
Query: 420 KDGHDGLPGPKGEPGIPAIPGTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 599
+DG G PG KGE G P +PG R
Sbjct: 55 RDGAPGAPGEKGEGGRPGLPGPRGEPGPRGEAGPVGAMGPAGECSVPP------------ 102
Query: 600 XXXXXXXYKQKHQSVFSVTRQTAQYPA-ANSLVKFNNVITNPQGDYDINTGKFTCKVPGL 776
+S FS R ++ P +++ + F+ V+ N QG YD TGKFTC+VPG+
Sbjct: 103 ------------RSAFSAKRSESRVPPPSDAPLPFDRVLVNEQGHYDAVTGKFTCQVPGV 150
Query: 777 YYF-VYYTSHTANLCMLLYRNGFKVITFCDHMSNSKQVS--SGGVLLRLQEGEQVW--LG 941
YYF V+ T + A+L L +NG + +F + + SGG ++RL+ +QVW +G
Sbjct: 151 YYFAVHATVYRASLQFDLVKNGESIASFFQFFGGWPKPASLSGGAMVRLEPEDQVWVQVG 210
Query: 942 VNDYNGLVGMEGSDSIFSGFLLF 1010
V DY G+ +DS FSGFL++
Sbjct: 211 VGDYIGIYASIKTDSTFSGFLVY 233
>ref|NP_001003924.1| complement C1q subcomponent subunit A precursor [Sus scrofa].
Length = 247
Score = 95.1 bits (235), Expect = 7e-20
Identities = 66/208 (31%), Positives = 95/208 (45%), Gaps = 9/208 (4%)
Frame = +3
Query: 420 KDGHDGLPGPKGEPGIPAIPGTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 599
K G G PGP G PG+P +PG +
Sbjct: 80 KPGRMGYPGPSGPPGLPGLPGLKGIKGNPGNI---------------------------- 111
Query: 600 XXXXXXXYKQKHQSVFSVTRQTAQYPAANSLVKFNNVITNPQGDYDINTGKFTCKVPGLY 779
K + + FS RQ P + ++V F+ VITN +G Y G+F C VPG Y
Sbjct: 112 --------KDQRRPAFSAVRQNP--PTSGNVVIFDEVITNQEGAYKSQLGQFICDVPGYY 161
Query: 780 YFVYYTSHTANLCMLLYRNG----FKVITFCDHMSNSK---QVSSGGVLLRLQEGEQVWL 938
YF + +LC+ + + + + FCD NSK QV SGG +L+LQ G++VW+
Sbjct: 162 YFTFQVVSKWDLCLYIMSSRRDQVQQSLGFCDF--NSKGLFQVVSGGTVLQLQRGDKVWI 219
Query: 939 GVNDYNGLV--GMEGSDSIFSGFLLFPN 1016
+ G + G E +DS+FSGFL+FP+
Sbjct: 220 QRDPNKGRIYQGSE-ADSVFSGFLIFPS 246
>ref|XP_003130932.1| PREDICTED: complement C1q tumor necrosis factor-related protein
9A-like [Sus scrofa].
Length = 333
Score = 92.8 bits (229), Expect = 3e-19
Identities = 46/119 (38%), Positives = 77/119 (64%), Gaps = 4/119 (3%)
Frame = +3
Query: 666 AQYPAANSLVKFNNVITNPQGDYDINTGKFTCKVPGLYYFVYY-TSHTANLCMLLYRNGF 842
+++P ++ V+F+ ++ N YD+ TGKFTC V G+Y+F Y+ T + N+ + L +NG
Sbjct: 212 SKFPPSDVPVRFDRILYNEFNHYDVATGKFTCHVAGVYFFTYHLTVFSRNVQVALVKNGV 271
Query: 843 KVITFCDHMSNSKQVSSGGVLLRLQEGEQVW---LGVNDYNGLVGMEGSDSIFSGFLLF 1010
K++ D ++S+ +SGG++L L+ G++VW LG +NGL E D+ F+GFLLF
Sbjct: 272 KILHTKDGYTSSEDQASGGIVLPLKLGDEVWLQVLGGERFNGLFADEDDDTTFTGFLLF 330
>ref|NP_999535.1| adiponectin [Sus scrofa].
Length = 243
Score = 86.7 bits (213), Expect = 2e-17
Identities = 49/133 (36%), Positives = 78/133 (58%), Gaps = 5/133 (3%)
Frame = +3
Query: 633 HQSVFSVTRQTAQYPAANSLVKFNNVITNPQGDYDINTGKFTCKVPGLYYFVYY-TSHTA 809
++S FSV +T + N ++ + N Q YD+ TGKF C +PGLYYF ++ T +
Sbjct: 110 YRSAFSVGLET-RVTVPNMPIRXTKIFYNQQNHYDVTTGKFHCNIPGLYYFSFHVTVYLK 168
Query: 810 NLCMLLYRNGFKVI-TFCDHMSNSKQVSSGGVLLRLQEGEQVWL---GVNDYNGLVGMEG 977
++ + LY+ V+ T+ + + +SG VLL L++G+QVWL G + NG+
Sbjct: 169 DVKVSLYKKDKAVLFTYDQYQDKNVDQASGSVLLYLEKGDQVWLQAYGDEENNGVYADNV 228
Query: 978 SDSIFSGFLLFPN 1016
+DSIF+GFLL+ N
Sbjct: 229 NDSIFTGFLLYHN 241
>ref|NP_001136301.1| complement C1q tumor necrosis factor-related protein 2 [Sus scrofa].
Length = 285
Score = 83.2 bits (204), Expect(2) = 1e-16
Identities = 49/130 (37%), Positives = 79/130 (60%), Gaps = 5/130 (3%)
Frame = +3
Query: 636 QSVFSVTRQTAQYPAANSLVKFNNVITNPQGDYDINTGKFTCKVPGLYYFVY-YTSHTAN 812
+S FSV T YP +KF+ ++ N G Y+ ++GKF C VPG+YYF Y T +
Sbjct: 149 KSAFSVA-VTKSYPRERLPIKFDKILMNEGGHYNASSGKFVCGVPGIYYFTYDITLANKH 207
Query: 813 LCMLLYRNG-FKVITFCDHMSNSKQVSSGGVLLRLQEGEQVWLGV--NDYNGL-VGMEGS 980
L + L NG +++ TF D + + V+SG +L L++G++VWL + ++ NGL +
Sbjct: 208 LAIGLVHNGQYRIRTF-DANTGNHDVASGSTILALKQGDEVWLQIFYSEQNGLFYDPYWT 266
Query: 981 DSIFSGFLLF 1010
DS+F+GFL++
Sbjct: 267 DSLFTGFLIY 276
Score = 21.6 bits (44), Expect(2) = 1e-16
Identities = 17/57 (29%), Positives = 20/57 (35%)
Frame = +1
Query: 409 GPPGRMGMMDCQGPRVSQESQLSLGHVDPRVRREIPANLAFLEKMVPWEPLGFQGLP 579
GPPGR G GP+ + G P+ P K P G GLP
Sbjct: 82 GPPGRTGNRGKPGPKGKAGAIGRAGPRGPKGVSGAPGKHGTPGKKGPKGKKGEPGLP 138
>ref|XP_003358707.1| PREDICTED: otolin-1-like [Sus scrofa].
Length = 474
Score = 80.5 bits (197), Expect = 2e-15
Identities = 53/146 (36%), Positives = 81/146 (55%), Gaps = 6/146 (4%)
Frame = +3
Query: 636 QSVFSVTRQTAQYPAANSLVKFNNVITNPQGDYDINTGKFTCKVPGLYYFVYYTS---HT 806
+S FS T + +P N+ +KF+ V+ N QG+Y TGKF C VPG Y F Y+ +
Sbjct: 339 RSAFSATL-SKPFPPPNTPIKFDKVLYNDQGNYSPVTGKFNCSVPGAYVFSYHVTVRGRP 397
Query: 807 ANLCMLLY-RNGFKV-ITFCDHMSNSKQVSSGGVLLRLQEGEQVWLGVN-DYNGLVGMEG 977
A + ++ + R FK T H + + ++L+L+ G+QVWL V+ D+NG+
Sbjct: 398 AQISLVAWNRKQFKSRETLYGHEIDQTSLL---IILKLRAGDQVWLEVSKDWNGVYVSAE 454
Query: 978 SDSIFSGFLLFPN*GGQACSHPGATP 1055
DSIF+GFLL+P +PG +P
Sbjct: 455 DDSIFTGFLLYPE------ENPGISP 474
>ref|XP_003358706.1| PREDICTED: otolin-1-like [Sus scrofa].
Length = 474
Score = 80.5 bits (197), Expect = 2e-15
Identities = 53/146 (36%), Positives = 81/146 (55%), Gaps = 6/146 (4%)
Frame = +3
Query: 636 QSVFSVTRQTAQYPAANSLVKFNNVITNPQGDYDINTGKFTCKVPGLYYFVYYTS---HT 806
+S FS T + +P N+ +KF+ V+ N QG+Y TGKF C VPG Y F Y+ +
Sbjct: 339 RSAFSATL-SKPFPPPNTPIKFDKVLYNDQGNYSPVTGKFNCSVPGAYVFSYHVTVRGRP 397
Query: 807 ANLCMLLY-RNGFKV-ITFCDHMSNSKQVSSGGVLLRLQEGEQVWLGVN-DYNGLVGMEG 977
A + ++ + R FK T H + + ++L+L+ G+QVWL V+ D+NG+
Sbjct: 398 AQISLVAWNRKQFKSRETLYGHEIDQTSLL---IILKLRAGDQVWLEVSKDWNGVYVSAE 454
Query: 978 SDSIFSGFLLFPN*GGQACSHPGATP 1055
DSIF+GFLL+P +PG +P
Sbjct: 455 DDSIFTGFLLYPE------ENPGISP 474
>ref|NP_001005153.1| collagen alpha-1(X) chain [Sus scrofa].
Length = 675
Score = 79.7 bits (195), Expect = 3e-15
Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 4/129 (3%)
Frame = +3
Query: 639 SVFSVTRQTAQYPAANSLVKFNNVITNPQGDYDINTGKFTCKVPGLYYFVYYTSHTANLC 818
S F+V A YPA + + F+ ++ N Q YD TG FTC++PG+YYF Y+
Sbjct: 547 SAFTVILSKA-YPAIGAPIPFDKILYNGQQHYDPKTGIFTCRIPGIYYFSYHIHVKGTHA 605
Query: 819 ML-LYRNGFKVI-TFCDHMSNSKQVSSGGVLLRLQEGEQVWLGVND--YNGLVGMEGSDS 986
+ LY+NG V+ T+ +++ +SG +L L + +QVWL + + NGL E S
Sbjct: 606 WVGLYKNGTPVMYTYDEYVKGYLDQASGSAILDLTDNDQVWLQLPNAGSNGLYSSEYVHS 665
Query: 987 IFSGFLLFP 1013
FSGFL+ P
Sbjct: 666 SFSGFLVAP 674
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,395,666
Number of extensions: 942395
Number of successful extensions: 9275
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 8800
Number of HSP's successfully gapped: 28
Length of query: 392
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 291
Effective length of database: 8,829,335
Effective search space: 2569336485
Effective search space used: 2569336485
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001492
(1178 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 1384 0.0
>Sscrofa_Chr06
|| Length = 157765593
Score = 1384 bits (698), Expect = 0.0
Identities = 719/722 (99%), Gaps = 3/722 (0%)
Strand = Plus / Plus
Query: 459 ccaggaatcccagctatccctgggacacgtggacccaagggtgagaagggagatcccggc 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74620387 ccaggaatcccagctatccctgggacacgtggacccaagggtgagaagggagatcccggc 74620446
Query: 519 aaacctggccttcctggaaaaaatggtcccatgggaacccctgggattccagggactccc 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74620447 aaacctggccttcctggaaaaaatggtcccatgggaacccctgggattccagggactccc 74620506
Query: 579 ggagtcatgggaccccgtggggagccgggtgaggagggaagatataagcagaagcaccag 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74620507 ggagtcatgggaccccgtggggagccgggtgaggagggaagatataagcagaagcaccag 74620566
Query: 639 tcagtgttctccgtcacacggcagacggcccagtacccagcggccaacagcttggtcaag 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74620567 tcagtgttctccgtcacacggcagacggcccagtacccagcggccaacagcttggtcaag 74620626
Query: 699 ttcaacaacgtcatcaccaacccgcagggggattatgacatcaacactggcaagttcacc 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74620627 ttcaacaacgtcatcaccaacccgcagggggattatgacatcaacactggcaagttcacc 74620686
Query: 759 tgcaaagtccccggcctctactactttgtctactacacatcacacacggccaacctgtgt 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74620687 tgcaaagtccccggcctctactactttgtctactacacatcacacacggccaacctgtgt 74620746
Query: 819 atgctgctctaccgcaacggcttcaaggtgatcaccttctgtgaccacatgtctaatagc 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74620747 atgctgctctaccgcaacggcttcaaggtgatcaccttctgtgaccacatgtctaatagc 74620806
Query: 879 aagcaggtcagctcgggcggtgtgctgttgcggctgcaggagggcgagcaggtgtggctg 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74620807 aagcaggtcagctcgggcggtgtgctgttgcggctgcaggagggcgagcaggtgtggctg 74620866
Query: 939 ggagtcaacgactacaatggcctggtgggcatggagggctccgacagcatcttctccggc 998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74620867 ggagtcaacgactacaatggcctggtgggcatggagggctccgacagcatcttctccggc 74620926
Query: 999 ttcttgctcttccctaactagggcgggcaggcctgctcccaccctggggccaccccacct 1058
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74620927 ttcttgctcttccctaactagggcgggcaggcctgctcccaccctggggccaccccacct 74620986
Query: 1059 ccctcagctttcccgcaagagcctgctgtgccacatccttgctcaggccattctcgccac 1118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74620987 ccctcagctttcccgcaagagcctgctgtgccacatccttgctcaggccattctcgccac 74621046
Query: 1119 tggatggactcctcctccaggaagccca-cctgccatcctaaccccat-agttctcgccc 1176
|||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||
Sbjct: 74621047 tggatggactcctcctccaggaagcccaccctgccatcct-accccatgagttctcgccc 74621105
Query: 1177 tc 1178
||
Sbjct: 74621106 tc 74621107
Score = 392 bits (198), Expect = e-106
Identities = 198/198 (100%)
Strand = Plus / Plus
Query: 266 ccagctccttccccagatggacatggggtccagctcctggccccttctggtactaaacct 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74616860 ccagctccttccccagatggacatggggtccagctcctggccccttctggtactaaacct 74616919
Query: 326 actgctgcttctactggcactgccacttgaaggccaggacaacttaagatgccatgggat 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74616920 actgctgcttctactggcactgccacttgaaggccaggacaacttaagatgccatgggat 74616979
Query: 386 ccctgggataccgggcctgcctggggcccccgggaaggatgggcatgatggactgccagg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74616980 ccctgggataccgggcctgcctggggcccccgggaaggatgggcatgatggactgccagg 74617039
Query: 446 gcccaagggtgagccagg 463
||||||||||||||||||
Sbjct: 74617040 gcccaagggtgagccagg 74617057
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 2 ggacactcatgacctgaaggtggagggacacaggggcgtccctgtggtcagtctggctca 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74616353 ggacactcatgacctgaaggtggagggacacaggggcgtccctgtggtcagtctggctca 74616412
Query: 62 gcacccaaaagaaagtattgagtcaggaaaaattatgggaaaggggatgtggtgtt 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74616413 gcacccaaaagaaagtattgagtcaggaaaaattatgggaaaggggatgtggtgtt 74616468
Score = 230 bits (116), Expect = 1e-57
Identities = 122/124 (98%)
Strand = Plus / Plus
Query: 146 ccgccgagtctgttccgggccctccttgctgcatccactccgactcggtgtcttcctgcc 205
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 74616497 ccgcccagtctgttccgggccctccttgctgcatccactccgactcggtgtcctcctgcc 74616556
Query: 206 ttggagaagaaaagcagacctgaggacatcctgtgaccagaccagaaacctcccacctgt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74616557 ttggagaagaaaagcagacctgaggacatcctgtgaccagaccagaaacctcccacctgt 74616616
Query: 266 ccag 269
||||
Sbjct: 74616617 ccag 74616620
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,989,557
Number of extensions: 454
Number of successful extensions: 454
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 454
Number of HSP's successfully gapped: 4
Length of query: 1178
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1157
Effective length of database: 2,808,413,156
Effective search space: 3249334021492
Effective search space used: 3249334021492
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)