Animal-Genome cDNA 20110601C-001500


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001500
         (1466 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001069960.1| dihydropteridine reductase [Bos taurus].          380   e-105

>ref|NP_001069960.1| dihydropteridine reductase [Bos taurus].
          Length = 242

 Score =  380 bits (976), Expect = e-105
 Identities = 189/230 (82%), Positives = 195/230 (84%)
 Frame = +3

Query: 210 VLVYGGRGALGSRCVQAFRARNWWVASIDXXXXXXXXXXXXXKMTDSFTEQADQVTAEVG 389
           VLVYGGRGALGSRCVQAFRARNWWVASID             KMTDSFTEQADQVTAEVG
Sbjct: 11  VLVYGGRGALGSRCVQAFRARNWWVASIDVQENEEASANVVVKMTDSFTEQADQVTAEVG 70

Query: 390 KLLGAEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSMWTSTISSHLATKHLKEXXXX 569
           KLLG EKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQS+WTSTISSHLATKHLKE    
Sbjct: 71  KLLGTEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSVWTSTISSHLATKHLKEGGLL 130

Query: 570 XXXXXXXXXXXTPGMIGYGMAKGAVHQLCQSLAGKDSGMPSGAAAIAVLPVTLDTPLNRK 749
                      TPGMIGYGMAK AVHQLCQSLAGK SG+P GAAA+A+LPVTLDTP+NRK
Sbjct: 131 TLAGARAALDGTPGMIGYGMAKAAVHQLCQSLAGKSSGLPPGAAAVALLPVTLDTPVNRK 190

Query: 750 SMPHADFSSWTPLEFLVETFHDWIIEKNRPSSGSLIQVVTTQGKTELTPA 899
           SMP ADFSSWTPLEFLVETFHDWI EKNRPSSGSLIQVVTT+GKTELT A
Sbjct: 191 SMPEADFSSWTPLEFLVETFHDWITEKNRPSSGSLIQVVTTEGKTELTAA 240


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 56,126,184
Number of extensions: 1697055
Number of successful extensions: 6367
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6329
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 382
Effective length of database: 14,174,046
Effective search space: 5414485572
Effective search space used: 5414485572
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001500
         (1466 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_536229.2| PREDICTED: similar to Dihydropteridine reductas...   391   e-109
Alignment   gi|XP_862388.1| PREDICTED: similar to Dihydropteridine reductas...   322   4e-88
Alignment   gi|XP_862420.1| PREDICTED: similar to Dihydropteridine reductas...   207   2e-53
Alignment   gi|XP_862334.1| PREDICTED: similar to Dihydropteridine reductas...   151   2e-36

>ref|XP_536229.2| PREDICTED: similar to Dihydropteridine reductase (HDHPR) (Quinoid
           dihydropteridine reductase) isoform 2 [Canis
           familiaris].
          Length = 242

 Score =  391 bits (1005), Expect = e-109
 Identities = 195/232 (84%), Positives = 200/232 (86%)
 Frame = +3

Query: 210 VLVYGGRGALGSRCVQAFRARNWWVASIDXXXXXXXXXXXXXKMTDSFTEQADQVTAEVG 389
           VLVYGGRGALGSRCVQAFRAR+WWVASID             KMTDSFTEQADQVTAEVG
Sbjct: 11  VLVYGGRGALGSRCVQAFRARSWWVASIDVVENEEASASVVVKMTDSFTEQADQVTAEVG 70

Query: 390 KLLGAEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSMWTSTISSHLATKHLKEXXXX 569
           KLLG EKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSMWTSTISSHLATKHLKE    
Sbjct: 71  KLLGEEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSMWTSTISSHLATKHLKEGGIL 130

Query: 570 XXXXXXXXXXXTPGMIGYGMAKGAVHQLCQSLAGKDSGMPSGAAAIAVLPVTLDTPLNRK 749
                      TPGMIGYGMAKGAVHQLCQSLAGK+SGMPSG+AAIAVLPVTLDTP+NRK
Sbjct: 131 TLAGAKAALDGTPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGSAAIAVLPVTLDTPMNRK 190

Query: 750 SMPHADFSSWTPLEFLVETFHDWIIEKNRPSSGSLIQVVTTQGKTELTPAYF 905
           SMP ADFSSWTPLEFLVETFHDWI  KNRPSSGSLIQVVTT+GKTELTPAYF
Sbjct: 191 SMPEADFSSWTPLEFLVETFHDWITGKNRPSSGSLIQVVTTEGKTELTPAYF 242


>ref|XP_862388.1| PREDICTED: similar to Dihydropteridine reductase (HDHPR) (Quinoid
           dihydropteridine reductase) isoform 4 [Canis
           familiaris].
          Length = 214

 Score =  322 bits (826), Expect = 4e-88
 Identities = 169/232 (72%), Positives = 173/232 (74%)
 Frame = +3

Query: 210 VLVYGGRGALGSRCVQAFRARNWWVASIDXXXXXXXXXXXXXKMTDSFTEQADQVTAEVG 389
           VLVYGGRGALGSRCVQAFRAR+WWVASID             KMTDSFTEQADQVTAEVG
Sbjct: 11  VLVYGGRGALGSRCVQAFRARSWWVASIDVVENEEASASVVVKMTDSFTEQADQVTAEVG 70

Query: 390 KLLGAEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSMWTSTISSHLATKHLKEXXXX 569
           KLLG EKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSMWTSTISSHLATKHLKE    
Sbjct: 71  KLLGEEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSMWTSTISSHLATKHLKEGGIL 130

Query: 570 XXXXXXXXXXXTPGMIGYGMAKGAVHQLCQSLAGKDSGMPSGAAAIAVLPVTLDTPLNRK 749
                      TPGMIGYGMAKGAVHQLCQSLAGK+SGMPSG+AAIAVLP          
Sbjct: 131 TLAGAKAALDGTPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGSAAIAVLP---------- 180

Query: 750 SMPHADFSSWTPLEFLVETFHDWIIEKNRPSSGSLIQVVTTQGKTELTPAYF 905
                             TFHDWI  KNRPSSGSLIQVVTT+GKTELTPAYF
Sbjct: 181 ------------------TFHDWITGKNRPSSGSLIQVVTTEGKTELTPAYF 214


>ref|XP_862420.1| PREDICTED: similar to Dihydropteridine reductase (HDHPR) (Quinoid
           dihydropteridine reductase) isoform 5 [Canis
           familiaris].
          Length = 150

 Score =  207 bits (527), Expect = 2e-53
 Identities = 104/135 (77%), Positives = 106/135 (78%)
 Frame = +3

Query: 210 VLVYGGRGALGSRCVQAFRARNWWVASIDXXXXXXXXXXXXXKMTDSFTEQADQVTAEVG 389
           VLVYGGRGALGSRCVQAFRAR+WWVASID             KMTDSFTEQADQVTAEVG
Sbjct: 11  VLVYGGRGALGSRCVQAFRARSWWVASIDVVENEEASASVVVKMTDSFTEQADQVTAEVG 70

Query: 390 KLLGAEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSMWTSTISSHLATKHLKEXXXX 569
           KLLG EKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSMWTSTISSHLATKHLKE    
Sbjct: 71  KLLGEEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSMWTSTISSHLATKHLKEGGIL 130

Query: 570 XXXXXXXXXXXTPGM 614
                      TPG+
Sbjct: 131 TLAGAKAALDGTPGL 145


>ref|XP_862334.1| PREDICTED: similar to Dihydropteridine reductase (HDHPR) (Quinoid
           dihydropteridine reductase) isoform 3 [Canis
           familiaris].
          Length = 98

 Score =  151 bits (381), Expect = 2e-36
 Identities = 75/91 (82%), Positives = 75/91 (82%)
 Frame = +3

Query: 339 MTDSFTEQADQVTAEVGKLLGAEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSMWTS 518
           MTDSFTEQADQVTAEVGKLLG EKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSMWTS
Sbjct: 1   MTDSFTEQADQVTAEVGKLLGEEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSMWTS 60

Query: 519 TISSHLATKHLKEXXXXXXXXXXXXXXXTPG 611
           TISSHLATKHLKE               TPG
Sbjct: 61  TISSHLATKHLKEGGILTLAGAKAALDGTPG 91


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 58,341,715
Number of extensions: 1721583
Number of successful extensions: 6882
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6849
Number of HSP's successfully gapped: 4
Length of query: 488
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 381
Effective length of database: 15,307,552
Effective search space: 5832177312
Effective search space used: 5832177312
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001500
         (1466 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_000311.2| dihydropteridine reductase [Homo sapiens].           389   e-108

>ref|NP_000311.2| dihydropteridine reductase [Homo sapiens].
          Length = 244

 Score =  389 bits (1000), Expect = e-108
 Identities = 193/232 (83%), Positives = 199/232 (85%)
 Frame = +3

Query: 210 VLVYGGRGALGSRCVQAFRARNWWVASIDXXXXXXXXXXXXXKMTDSFTEQADQVTAEVG 389
           VLVYGGRGALGSRCVQAFRARNWWVAS+D             KMTDSFTEQADQVTAEVG
Sbjct: 13  VLVYGGRGALGSRCVQAFRARNWWVASVDVVENEEASASIIVKMTDSFTEQADQVTAEVG 72

Query: 390 KLLGAEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSMWTSTISSHLATKHLKEXXXX 569
           KLLG EKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQS+WTSTISSHLATKHLKE    
Sbjct: 73  KLLGEEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLL 132

Query: 570 XXXXXXXXXXXTPGMIGYGMAKGAVHQLCQSLAGKDSGMPSGAAAIAVLPVTLDTPLNRK 749
                      TPGMIGYGMAKGAVHQLCQSLAGK+SGMP GAAAIAVLPVTLDTP+NRK
Sbjct: 133 TLAGAKAALDGTPGMIGYGMAKGAVHQLCQSLAGKNSGMPPGAAAIAVLPVTLDTPMNRK 192

Query: 750 SMPHADFSSWTPLEFLVETFHDWIIEKNRPSSGSLIQVVTTQGKTELTPAYF 905
           SMP ADFSSWTPLEFLVETFHDWI  KNRPSSGSLIQVVTT+G+TELTPAYF
Sbjct: 193 SMPEADFSSWTPLEFLVETFHDWITGKNRPSSGSLIQVVTTEGRTELTPAYF 244


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 57,009,127
Number of extensions: 1674083
Number of successful extensions: 6045
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6017
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 381
Effective length of database: 14,770,016
Effective search space: 5627376096
Effective search space used: 5627376096
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001500
         (1466 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_077198.1| dihydropteridine reductase [Mus musculus].           383   e-106

>ref|NP_077198.1| dihydropteridine reductase [Mus musculus].
          Length = 241

 Score =  383 bits (983), Expect = e-106
 Identities = 190/232 (81%), Positives = 196/232 (84%)
 Frame = +3

Query: 210 VLVYGGRGALGSRCVQAFRARNWWVASIDXXXXXXXXXXXXXKMTDSFTEQADQVTAEVG 389
           VLVYGGRGALGSRCVQAFRARNWWVASID             KMTDSFTEQADQVTA+VG
Sbjct: 10  VLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVVVKMTDSFTEQADQVTADVG 69

Query: 390 KLLGAEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSMWTSTISSHLATKHLKEXXXX 569
           KLLG +KVDAILCVAGGWAGGNAKSKSLFKNCD+MWKQSMWTSTISSHLATKHLKE    
Sbjct: 70  KLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDMMWKQSMWTSTISSHLATKHLKEGGLL 129

Query: 570 XXXXXXXXXXXTPGMIGYGMAKGAVHQLCQSLAGKDSGMPSGAAAIAVLPVTLDTPLNRK 749
                      TPGMIGYGMAKGAVHQLCQSLAGK+SGMP GAAAIAVLPVTLDTP+NRK
Sbjct: 130 TLAGAKAALDGTPGMIGYGMAKGAVHQLCQSLAGKNSGMPPGAAAIAVLPVTLDTPMNRK 189

Query: 750 SMPHADFSSWTPLEFLVETFHDWIIEKNRPSSGSLIQVVTTQGKTELTPAYF 905
           SMP ADFSSWTPLEFLVETFHDWI    RP+SGSLIQVVTT GKTELTPAYF
Sbjct: 190 SMPEADFSSWTPLEFLVETFHDWITGNKRPNSGSLIQVVTTDGKTELTPAYF 241


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 48,089,277
Number of extensions: 1387205
Number of successful extensions: 4635
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4625
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 383
Effective length of database: 12,463,779
Effective search space: 4773627357
Effective search space used: 4773627357
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001500
         (1466 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_999508.1| dihydropteridine reductase [Sus scrofa].             406   e-113

>ref|NP_999508.1| dihydropteridine reductase [Sus scrofa].
          Length = 243

 Score =  406 bits (1044), Expect = e-113
 Identities = 203/232 (87%), Positives = 203/232 (87%)
 Frame = +3

Query: 210 VLVYGGRGALGSRCVQAFRARNWWVASIDXXXXXXXXXXXXXKMTDSFTEQADQVTAEVG 389
           VLVYGGRGALGSRCVQAFRARNWWVASID             KMTDSFTEQADQVTAEVG
Sbjct: 12  VLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASANVVVKMTDSFTEQADQVTAEVG 71

Query: 390 KLLGAEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSMWTSTISSHLATKHLKEXXXX 569
           KLLG EKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSMWTSTISSHLATKHLKE    
Sbjct: 72  KLLGTEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSMWTSTISSHLATKHLKEGGLL 131

Query: 570 XXXXXXXXXXXTPGMIGYGMAKGAVHQLCQSLAGKDSGMPSGAAAIAVLPVTLDTPLNRK 749
                      TPGMIGYGMAKGAVHQLCQSLAGKDSGMPSGAAAIAVLPVTLDTPLNRK
Sbjct: 132 TLAGAKAALDGTPGMIGYGMAKGAVHQLCQSLAGKDSGMPSGAAAIAVLPVTLDTPLNRK 191

Query: 750 SMPHADFSSWTPLEFLVETFHDWIIEKNRPSSGSLIQVVTTQGKTELTPAYF 905
           SMPHADFSSWTPLEFLVETFHDWIIEKNRPSSGSLIQVVTTQGKTELTPAYF
Sbjct: 192 SMPHADFSSWTPLEFLVETFHDWIIEKNRPSSGSLIQVVTTQGKTELTPAYF 243


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,497,370
Number of extensions: 1132361
Number of successful extensions: 4242
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4223
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 385
Effective length of database: 8,779,541
Effective search space: 3380123285
Effective search space used: 3380123285
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001500
         (1466 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr08                                                        1035   0.0  

>Sscrofa_Chr08 
||          Length = 148491826

 Score = 1035 bits (522), Expect = 0.0
 Identities = 631/658 (95%), Gaps = 9/658 (1%)
 Strand = Plus / Minus

                                                                            
Query: 803      aaccttccacgactggatcatagnnnnnnnccgaccaagctcaggcagcctcatccaggt 862
                |||||||||||||||||||||||       ||||||||||||||||||||||||||||||
Sbjct: 12332915 aaccttccacgactggatcatagaaaaaaaccgaccaagctcaggcagcctcatccaggt 12332856

                                                                            
Query: 863      ggtgaccacgcagggaaagacagagctcaccccggcgtatttttaagcttcattttgttg 922
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12332855 ggtgaccacgcagggaaagacagagctcaccccggcgtatttttaagcttcattttgttg 12332796

                                                                            
Query: 923      tctgtgaggggcctgtcagagaagtcattaatccatccgtggggccccgcccggccctgc 982
                ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 12332795 tctgtgaggggcctgtcagagaagtcattaatccatccgtggggccccgcctggccctgc 12332736

                                                                            
Query: 983      cttttctgtaatcctgttcgtggtaggagatagtcctatttgtctcccacctcatgtgca 1042
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12332735 cttttctgtaatcctgttcgtggtaggagatagtcctatttgtctcccacctcatgtgca 12332676

                                                                            
Query: 1043     tttgttctcccaggacagtggcaaaggtttaagtgaaataaaaacacgtgaggcccacag 1102
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12332675 tttgttctcccaggacagtggcaaaggtttaagtgaaataaaaacacgtgaggcccacag 12332616

                                                                            
Query: 1103     cacggtcagttggtgtc-accacgtaattgaggcctcaggacggccccctctgtgtccac 1161
                ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12332615 cacggtcagttggtgtcaaccacgtaattgaggcctcaggacggccccctctgtgtccac 12332556

                                                                            
Query: 1162     gttgaattgcatttgtgatgctgtttatgtgtccccaatggtggccgtccacctgtctag 1221
                |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 12332555 gttgaattgcatttgtgatgctgtttatgtgtccccgatggtggctgtccacctgtctag 12332496

                                                                            
Query: 1222     gtcagagatttgctgggatgggggaggtttggagcttgagttatttttgaatgttatgtt 1281
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12332495 gtcagagatttgctgggatgggggaggtttggagcttgagttatttttgaatgttatgtt 12332436

                                                                            
Query: 1282     catgtcaccgatgtagtttttggatcttcgaagtaaactgccntaaaatgccttctgtgc 1341
                ||||| || ||||||||||||||| ||||||||||||||||| ||||| |||| ||||||
Sbjct: 12332435 catgtgactgatgtagtttttggagcttcgaagtaaactgccttaaaacgcctcctgtgc 12332376

                                                                            
Query: 1342     tgtaag-caaaccctgtggactctgtt-agatatctttttcc-gtgcagtcg-cacgtgc 1397
                |||||| |||||||||||||||||||| |||||||||||||| ||||||||| |||||||
Sbjct: 12332375 tgtaagccaaaccctgtggactctgttaagatatctttttcctgtgcagtcgccacgtgc 12332316

                                                                          
Query: 1398     tc-agaagactacttgtgattg-ttggaa-ttaacttcctaat-aatgcccttcattt 1451
                || |||  |||||||||||||| |||||| ||||||||||||| ||||||||||||||
Sbjct: 12332315 tcaagagaactacttgtgattgtttggaatttaacttcctaataaatgcccttcattt 12332258



 Score =  289 bits (146), Expect = 2e-75
 Identities = 149/150 (99%)
 Strand = Plus / Minus

                                                                            
Query: 129      ttcttgccggggtgtccggagtcgcgggagccgagccggaggagcgggatggcggcggca 188
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12351774 ttcttgccggggtgtccggagtcgcgggagccgagccggaggagcgggatggcggcggca 12351715

                                                                            
Query: 189      gctgcgggcgaggcgcgccgggtgctggtgtacggcggccggggcgccctgggctcccga 248
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 12351714 gctgcgggcgaggcgcgccgggtgctggtgtacggcggccggggcgccctgggctcccgc 12351655

                                              
Query: 249      tgcgtgcaggcgttccgggcccgcaactgg 278
                ||||||||||||||||||||||||||||||
Sbjct: 12351654 tgcgtgcaggcgttccgggcccgcaactgg 12351625



 Score =  281 bits (142), Expect = 5e-73
 Identities = 142/142 (100%)
 Strand = Plus / Minus

                                                                            
Query: 469      ctctctttaaaaactgtgacctgatgtggaagcagagcatgtggacgtcaaccatctcca 528
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12341393 ctctctttaaaaactgtgacctgatgtggaagcagagcatgtggacgtcaaccatctcca 12341334

                                                                            
Query: 529      gccacctggccaccaagcatctcaaggaaggaggcctcctgaccttggccggggccaagg 588
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12341333 gccacctggccaccaagcatctcaaggaaggaggcctcctgaccttggccggggccaagg 12341274

                                      
Query: 589      ccgccctggatgggacgcccgg 610
                ||||||||||||||||||||||
Sbjct: 12341273 ccgccctggatgggacgcccgg 12341252



 Score =  220 bits (111), Expect = 2e-54
 Identities = 111/111 (100%)
 Strand = Plus / Minus

                                                                            
Query: 609      gggatgatcggctatggcatggccaagggcgccgtccaccagctctgccagagcctggcc 668
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12336255 gggatgatcggctatggcatggccaagggcgccgtccaccagctctgccagagcctggcc 12336196

                                                                   
Query: 669      gggaaggacagcggcatgccatccggggctgccgccatcgccgtgctcccg 719
                |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12336195 gggaaggacagcggcatgccatccggggctgccgccatcgccgtgctcccg 12336145



 Score =  198 bits (100), Expect = 6e-48
 Identities = 100/100 (100%)
 Strand = Plus / Minus

                                                                            
Query: 369      caggtgactgctgaggttggaaagctcttgggtgcagagaaggtggacgccatcctttgt 428
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12343705 caggtgactgctgaggttggaaagctcttgggtgcagagaaggtggacgccatcctttgt 12343646

                                                        
Query: 429      gtggccggaggatgggctgggggcaatgccaagtccaagt 468
                ||||||||||||||||||||||||||||||||||||||||
Sbjct: 12343645 gtggccggaggatgggctgggggcaatgccaagtccaagt 12343606



 Score =  190 bits (96), Expect = 1e-45
 Identities = 96/96 (100%)
 Strand = Plus / Minus

                                                                            
Query: 278      gtgggtcgccagcatcgacgtggtggagaatgaagaggccagtgccaatgtcgtcgttaa 337
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12349340 gtgggtcgccagcatcgacgtggtggagaatgaagaggccagtgccaatgtcgtcgttaa 12349281

                                                    
Query: 338      aatgacagactcgtttacggagcaggccgaccaggt 373
                ||||||||||||||||||||||||||||||||||||
Sbjct: 12349280 aatgacagactcgtttacggagcaggccgaccaggt 12349245



 Score =  167 bits (84), Expect = 2e-38
 Identities = 84/84 (100%)
 Strand = Plus / Minus

                                                                            
Query: 719      ggtcaccctggacacgcccttgaacaggaagtcgatgccccacgcggacttcagctcctg 778
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12334578 ggtcaccctggacacgcccttgaacaggaagtcgatgccccacgcggacttcagctcctg 12334519

                                        
Query: 779      gacgcccttagaattcctggtcga 802
                ||||||||||||||||||||||||
Sbjct: 12334518 gacgcccttagaattcctggtcga 12334495



 Score =  109 bits (55), Expect = 4e-21
 Identities = 55/55 (100%)
 Strand = Plus / Minus

                                                                       
Query: 43       gctaggcggcagcagcgggctcggccgtcagcgcggccaccgcgcggtccctctt 97
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12351860 gctaggcggcagcagcgggctcggccgtcagcgcggccaccgcgcggtccctctt 12351806


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,195,270
Number of extensions: 253
Number of successful extensions: 253
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 250
Number of HSP's successfully gapped: 8
Length of query: 1466
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1445
Effective length of database: 2,808,413,156
Effective search space: 4058157010420
Effective search space used: 4058157010420
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)