Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001500
(1466 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069960.1| dihydropteridine reductase [Bos taurus]. 380 e-105
>ref|NP_001069960.1| dihydropteridine reductase [Bos taurus].
Length = 242
Score = 380 bits (976), Expect = e-105
Identities = 189/230 (82%), Positives = 195/230 (84%)
Frame = +3
Query: 210 VLVYGGRGALGSRCVQAFRARNWWVASIDXXXXXXXXXXXXXKMTDSFTEQADQVTAEVG 389
VLVYGGRGALGSRCVQAFRARNWWVASID KMTDSFTEQADQVTAEVG
Sbjct: 11 VLVYGGRGALGSRCVQAFRARNWWVASIDVQENEEASANVVVKMTDSFTEQADQVTAEVG 70
Query: 390 KLLGAEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSMWTSTISSHLATKHLKEXXXX 569
KLLG EKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQS+WTSTISSHLATKHLKE
Sbjct: 71 KLLGTEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSVWTSTISSHLATKHLKEGGLL 130
Query: 570 XXXXXXXXXXXTPGMIGYGMAKGAVHQLCQSLAGKDSGMPSGAAAIAVLPVTLDTPLNRK 749
TPGMIGYGMAK AVHQLCQSLAGK SG+P GAAA+A+LPVTLDTP+NRK
Sbjct: 131 TLAGARAALDGTPGMIGYGMAKAAVHQLCQSLAGKSSGLPPGAAAVALLPVTLDTPVNRK 190
Query: 750 SMPHADFSSWTPLEFLVETFHDWIIEKNRPSSGSLIQVVTTQGKTELTPA 899
SMP ADFSSWTPLEFLVETFHDWI EKNRPSSGSLIQVVTT+GKTELT A
Sbjct: 191 SMPEADFSSWTPLEFLVETFHDWITEKNRPSSGSLIQVVTTEGKTELTAA 240
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 56,126,184
Number of extensions: 1697055
Number of successful extensions: 6367
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6329
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 382
Effective length of database: 14,174,046
Effective search space: 5414485572
Effective search space used: 5414485572
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001500
(1466 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536229.2| PREDICTED: similar to Dihydropteridine reductas... 391 e-109
Alignment gi|XP_862388.1| PREDICTED: similar to Dihydropteridine reductas... 322 4e-88
Alignment gi|XP_862420.1| PREDICTED: similar to Dihydropteridine reductas... 207 2e-53
Alignment gi|XP_862334.1| PREDICTED: similar to Dihydropteridine reductas... 151 2e-36
>ref|XP_536229.2| PREDICTED: similar to Dihydropteridine reductase (HDHPR) (Quinoid
dihydropteridine reductase) isoform 2 [Canis
familiaris].
Length = 242
Score = 391 bits (1005), Expect = e-109
Identities = 195/232 (84%), Positives = 200/232 (86%)
Frame = +3
Query: 210 VLVYGGRGALGSRCVQAFRARNWWVASIDXXXXXXXXXXXXXKMTDSFTEQADQVTAEVG 389
VLVYGGRGALGSRCVQAFRAR+WWVASID KMTDSFTEQADQVTAEVG
Sbjct: 11 VLVYGGRGALGSRCVQAFRARSWWVASIDVVENEEASASVVVKMTDSFTEQADQVTAEVG 70
Query: 390 KLLGAEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSMWTSTISSHLATKHLKEXXXX 569
KLLG EKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSMWTSTISSHLATKHLKE
Sbjct: 71 KLLGEEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSMWTSTISSHLATKHLKEGGIL 130
Query: 570 XXXXXXXXXXXTPGMIGYGMAKGAVHQLCQSLAGKDSGMPSGAAAIAVLPVTLDTPLNRK 749
TPGMIGYGMAKGAVHQLCQSLAGK+SGMPSG+AAIAVLPVTLDTP+NRK
Sbjct: 131 TLAGAKAALDGTPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGSAAIAVLPVTLDTPMNRK 190
Query: 750 SMPHADFSSWTPLEFLVETFHDWIIEKNRPSSGSLIQVVTTQGKTELTPAYF 905
SMP ADFSSWTPLEFLVETFHDWI KNRPSSGSLIQVVTT+GKTELTPAYF
Sbjct: 191 SMPEADFSSWTPLEFLVETFHDWITGKNRPSSGSLIQVVTTEGKTELTPAYF 242
>ref|XP_862388.1| PREDICTED: similar to Dihydropteridine reductase (HDHPR) (Quinoid
dihydropteridine reductase) isoform 4 [Canis
familiaris].
Length = 214
Score = 322 bits (826), Expect = 4e-88
Identities = 169/232 (72%), Positives = 173/232 (74%)
Frame = +3
Query: 210 VLVYGGRGALGSRCVQAFRARNWWVASIDXXXXXXXXXXXXXKMTDSFTEQADQVTAEVG 389
VLVYGGRGALGSRCVQAFRAR+WWVASID KMTDSFTEQADQVTAEVG
Sbjct: 11 VLVYGGRGALGSRCVQAFRARSWWVASIDVVENEEASASVVVKMTDSFTEQADQVTAEVG 70
Query: 390 KLLGAEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSMWTSTISSHLATKHLKEXXXX 569
KLLG EKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSMWTSTISSHLATKHLKE
Sbjct: 71 KLLGEEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSMWTSTISSHLATKHLKEGGIL 130
Query: 570 XXXXXXXXXXXTPGMIGYGMAKGAVHQLCQSLAGKDSGMPSGAAAIAVLPVTLDTPLNRK 749
TPGMIGYGMAKGAVHQLCQSLAGK+SGMPSG+AAIAVLP
Sbjct: 131 TLAGAKAALDGTPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGSAAIAVLP---------- 180
Query: 750 SMPHADFSSWTPLEFLVETFHDWIIEKNRPSSGSLIQVVTTQGKTELTPAYF 905
TFHDWI KNRPSSGSLIQVVTT+GKTELTPAYF
Sbjct: 181 ------------------TFHDWITGKNRPSSGSLIQVVTTEGKTELTPAYF 214
>ref|XP_862420.1| PREDICTED: similar to Dihydropteridine reductase (HDHPR) (Quinoid
dihydropteridine reductase) isoform 5 [Canis
familiaris].
Length = 150
Score = 207 bits (527), Expect = 2e-53
Identities = 104/135 (77%), Positives = 106/135 (78%)
Frame = +3
Query: 210 VLVYGGRGALGSRCVQAFRARNWWVASIDXXXXXXXXXXXXXKMTDSFTEQADQVTAEVG 389
VLVYGGRGALGSRCVQAFRAR+WWVASID KMTDSFTEQADQVTAEVG
Sbjct: 11 VLVYGGRGALGSRCVQAFRARSWWVASIDVVENEEASASVVVKMTDSFTEQADQVTAEVG 70
Query: 390 KLLGAEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSMWTSTISSHLATKHLKEXXXX 569
KLLG EKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSMWTSTISSHLATKHLKE
Sbjct: 71 KLLGEEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSMWTSTISSHLATKHLKEGGIL 130
Query: 570 XXXXXXXXXXXTPGM 614
TPG+
Sbjct: 131 TLAGAKAALDGTPGL 145
>ref|XP_862334.1| PREDICTED: similar to Dihydropteridine reductase (HDHPR) (Quinoid
dihydropteridine reductase) isoform 3 [Canis
familiaris].
Length = 98
Score = 151 bits (381), Expect = 2e-36
Identities = 75/91 (82%), Positives = 75/91 (82%)
Frame = +3
Query: 339 MTDSFTEQADQVTAEVGKLLGAEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSMWTS 518
MTDSFTEQADQVTAEVGKLLG EKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSMWTS
Sbjct: 1 MTDSFTEQADQVTAEVGKLLGEEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSMWTS 60
Query: 519 TISSHLATKHLKEXXXXXXXXXXXXXXXTPG 611
TISSHLATKHLKE TPG
Sbjct: 61 TISSHLATKHLKEGGILTLAGAKAALDGTPG 91
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 58,341,715
Number of extensions: 1721583
Number of successful extensions: 6882
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6849
Number of HSP's successfully gapped: 4
Length of query: 488
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 381
Effective length of database: 15,307,552
Effective search space: 5832177312
Effective search space used: 5832177312
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001500
(1466 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000311.2| dihydropteridine reductase [Homo sapiens]. 389 e-108
>ref|NP_000311.2| dihydropteridine reductase [Homo sapiens].
Length = 244
Score = 389 bits (1000), Expect = e-108
Identities = 193/232 (83%), Positives = 199/232 (85%)
Frame = +3
Query: 210 VLVYGGRGALGSRCVQAFRARNWWVASIDXXXXXXXXXXXXXKMTDSFTEQADQVTAEVG 389
VLVYGGRGALGSRCVQAFRARNWWVAS+D KMTDSFTEQADQVTAEVG
Sbjct: 13 VLVYGGRGALGSRCVQAFRARNWWVASVDVVENEEASASIIVKMTDSFTEQADQVTAEVG 72
Query: 390 KLLGAEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSMWTSTISSHLATKHLKEXXXX 569
KLLG EKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQS+WTSTISSHLATKHLKE
Sbjct: 73 KLLGEEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLL 132
Query: 570 XXXXXXXXXXXTPGMIGYGMAKGAVHQLCQSLAGKDSGMPSGAAAIAVLPVTLDTPLNRK 749
TPGMIGYGMAKGAVHQLCQSLAGK+SGMP GAAAIAVLPVTLDTP+NRK
Sbjct: 133 TLAGAKAALDGTPGMIGYGMAKGAVHQLCQSLAGKNSGMPPGAAAIAVLPVTLDTPMNRK 192
Query: 750 SMPHADFSSWTPLEFLVETFHDWIIEKNRPSSGSLIQVVTTQGKTELTPAYF 905
SMP ADFSSWTPLEFLVETFHDWI KNRPSSGSLIQVVTT+G+TELTPAYF
Sbjct: 193 SMPEADFSSWTPLEFLVETFHDWITGKNRPSSGSLIQVVTTEGRTELTPAYF 244
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 57,009,127
Number of extensions: 1674083
Number of successful extensions: 6045
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6017
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 381
Effective length of database: 14,770,016
Effective search space: 5627376096
Effective search space used: 5627376096
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001500
(1466 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_077198.1| dihydropteridine reductase [Mus musculus]. 383 e-106
>ref|NP_077198.1| dihydropteridine reductase [Mus musculus].
Length = 241
Score = 383 bits (983), Expect = e-106
Identities = 190/232 (81%), Positives = 196/232 (84%)
Frame = +3
Query: 210 VLVYGGRGALGSRCVQAFRARNWWVASIDXXXXXXXXXXXXXKMTDSFTEQADQVTAEVG 389
VLVYGGRGALGSRCVQAFRARNWWVASID KMTDSFTEQADQVTA+VG
Sbjct: 10 VLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVVVKMTDSFTEQADQVTADVG 69
Query: 390 KLLGAEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSMWTSTISSHLATKHLKEXXXX 569
KLLG +KVDAILCVAGGWAGGNAKSKSLFKNCD+MWKQSMWTSTISSHLATKHLKE
Sbjct: 70 KLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDMMWKQSMWTSTISSHLATKHLKEGGLL 129
Query: 570 XXXXXXXXXXXTPGMIGYGMAKGAVHQLCQSLAGKDSGMPSGAAAIAVLPVTLDTPLNRK 749
TPGMIGYGMAKGAVHQLCQSLAGK+SGMP GAAAIAVLPVTLDTP+NRK
Sbjct: 130 TLAGAKAALDGTPGMIGYGMAKGAVHQLCQSLAGKNSGMPPGAAAIAVLPVTLDTPMNRK 189
Query: 750 SMPHADFSSWTPLEFLVETFHDWIIEKNRPSSGSLIQVVTTQGKTELTPAYF 905
SMP ADFSSWTPLEFLVETFHDWI RP+SGSLIQVVTT GKTELTPAYF
Sbjct: 190 SMPEADFSSWTPLEFLVETFHDWITGNKRPNSGSLIQVVTTDGKTELTPAYF 241
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 48,089,277
Number of extensions: 1387205
Number of successful extensions: 4635
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4625
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 383
Effective length of database: 12,463,779
Effective search space: 4773627357
Effective search space used: 4773627357
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001500
(1466 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999508.1| dihydropteridine reductase [Sus scrofa]. 406 e-113
>ref|NP_999508.1| dihydropteridine reductase [Sus scrofa].
Length = 243
Score = 406 bits (1044), Expect = e-113
Identities = 203/232 (87%), Positives = 203/232 (87%)
Frame = +3
Query: 210 VLVYGGRGALGSRCVQAFRARNWWVASIDXXXXXXXXXXXXXKMTDSFTEQADQVTAEVG 389
VLVYGGRGALGSRCVQAFRARNWWVASID KMTDSFTEQADQVTAEVG
Sbjct: 12 VLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASANVVVKMTDSFTEQADQVTAEVG 71
Query: 390 KLLGAEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSMWTSTISSHLATKHLKEXXXX 569
KLLG EKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSMWTSTISSHLATKHLKE
Sbjct: 72 KLLGTEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSMWTSTISSHLATKHLKEGGLL 131
Query: 570 XXXXXXXXXXXTPGMIGYGMAKGAVHQLCQSLAGKDSGMPSGAAAIAVLPVTLDTPLNRK 749
TPGMIGYGMAKGAVHQLCQSLAGKDSGMPSGAAAIAVLPVTLDTPLNRK
Sbjct: 132 TLAGAKAALDGTPGMIGYGMAKGAVHQLCQSLAGKDSGMPSGAAAIAVLPVTLDTPLNRK 191
Query: 750 SMPHADFSSWTPLEFLVETFHDWIIEKNRPSSGSLIQVVTTQGKTELTPAYF 905
SMPHADFSSWTPLEFLVETFHDWIIEKNRPSSGSLIQVVTTQGKTELTPAYF
Sbjct: 192 SMPHADFSSWTPLEFLVETFHDWIIEKNRPSSGSLIQVVTTQGKTELTPAYF 243
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,497,370
Number of extensions: 1132361
Number of successful extensions: 4242
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4223
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 385
Effective length of database: 8,779,541
Effective search space: 3380123285
Effective search space used: 3380123285
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001500
(1466 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 1035 0.0
>Sscrofa_Chr08
|| Length = 148491826
Score = 1035 bits (522), Expect = 0.0
Identities = 631/658 (95%), Gaps = 9/658 (1%)
Strand = Plus / Minus
Query: 803 aaccttccacgactggatcatagnnnnnnnccgaccaagctcaggcagcctcatccaggt 862
||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 12332915 aaccttccacgactggatcatagaaaaaaaccgaccaagctcaggcagcctcatccaggt 12332856
Query: 863 ggtgaccacgcagggaaagacagagctcaccccggcgtatttttaagcttcattttgttg 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12332855 ggtgaccacgcagggaaagacagagctcaccccggcgtatttttaagcttcattttgttg 12332796
Query: 923 tctgtgaggggcctgtcagagaagtcattaatccatccgtggggccccgcccggccctgc 982
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 12332795 tctgtgaggggcctgtcagagaagtcattaatccatccgtggggccccgcctggccctgc 12332736
Query: 983 cttttctgtaatcctgttcgtggtaggagatagtcctatttgtctcccacctcatgtgca 1042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12332735 cttttctgtaatcctgttcgtggtaggagatagtcctatttgtctcccacctcatgtgca 12332676
Query: 1043 tttgttctcccaggacagtggcaaaggtttaagtgaaataaaaacacgtgaggcccacag 1102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12332675 tttgttctcccaggacagtggcaaaggtttaagtgaaataaaaacacgtgaggcccacag 12332616
Query: 1103 cacggtcagttggtgtc-accacgtaattgaggcctcaggacggccccctctgtgtccac 1161
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12332615 cacggtcagttggtgtcaaccacgtaattgaggcctcaggacggccccctctgtgtccac 12332556
Query: 1162 gttgaattgcatttgtgatgctgtttatgtgtccccaatggtggccgtccacctgtctag 1221
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 12332555 gttgaattgcatttgtgatgctgtttatgtgtccccgatggtggctgtccacctgtctag 12332496
Query: 1222 gtcagagatttgctgggatgggggaggtttggagcttgagttatttttgaatgttatgtt 1281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12332495 gtcagagatttgctgggatgggggaggtttggagcttgagttatttttgaatgttatgtt 12332436
Query: 1282 catgtcaccgatgtagtttttggatcttcgaagtaaactgccntaaaatgccttctgtgc 1341
||||| || ||||||||||||||| ||||||||||||||||| ||||| |||| ||||||
Sbjct: 12332435 catgtgactgatgtagtttttggagcttcgaagtaaactgccttaaaacgcctcctgtgc 12332376
Query: 1342 tgtaag-caaaccctgtggactctgtt-agatatctttttcc-gtgcagtcg-cacgtgc 1397
|||||| |||||||||||||||||||| |||||||||||||| ||||||||| |||||||
Sbjct: 12332375 tgtaagccaaaccctgtggactctgttaagatatctttttcctgtgcagtcgccacgtgc 12332316
Query: 1398 tc-agaagactacttgtgattg-ttggaa-ttaacttcctaat-aatgcccttcattt 1451
|| ||| |||||||||||||| |||||| ||||||||||||| ||||||||||||||
Sbjct: 12332315 tcaagagaactacttgtgattgtttggaatttaacttcctaataaatgcccttcattt 12332258
Score = 289 bits (146), Expect = 2e-75
Identities = 149/150 (99%)
Strand = Plus / Minus
Query: 129 ttcttgccggggtgtccggagtcgcgggagccgagccggaggagcgggatggcggcggca 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12351774 ttcttgccggggtgtccggagtcgcgggagccgagccggaggagcgggatggcggcggca 12351715
Query: 189 gctgcgggcgaggcgcgccgggtgctggtgtacggcggccggggcgccctgggctcccga 248
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12351714 gctgcgggcgaggcgcgccgggtgctggtgtacggcggccggggcgccctgggctcccgc 12351655
Query: 249 tgcgtgcaggcgttccgggcccgcaactgg 278
||||||||||||||||||||||||||||||
Sbjct: 12351654 tgcgtgcaggcgttccgggcccgcaactgg 12351625
Score = 281 bits (142), Expect = 5e-73
Identities = 142/142 (100%)
Strand = Plus / Minus
Query: 469 ctctctttaaaaactgtgacctgatgtggaagcagagcatgtggacgtcaaccatctcca 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12341393 ctctctttaaaaactgtgacctgatgtggaagcagagcatgtggacgtcaaccatctcca 12341334
Query: 529 gccacctggccaccaagcatctcaaggaaggaggcctcctgaccttggccggggccaagg 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12341333 gccacctggccaccaagcatctcaaggaaggaggcctcctgaccttggccggggccaagg 12341274
Query: 589 ccgccctggatgggacgcccgg 610
||||||||||||||||||||||
Sbjct: 12341273 ccgccctggatgggacgcccgg 12341252
Score = 220 bits (111), Expect = 2e-54
Identities = 111/111 (100%)
Strand = Plus / Minus
Query: 609 gggatgatcggctatggcatggccaagggcgccgtccaccagctctgccagagcctggcc 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12336255 gggatgatcggctatggcatggccaagggcgccgtccaccagctctgccagagcctggcc 12336196
Query: 669 gggaaggacagcggcatgccatccggggctgccgccatcgccgtgctcccg 719
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12336195 gggaaggacagcggcatgccatccggggctgccgccatcgccgtgctcccg 12336145
Score = 198 bits (100), Expect = 6e-48
Identities = 100/100 (100%)
Strand = Plus / Minus
Query: 369 caggtgactgctgaggttggaaagctcttgggtgcagagaaggtggacgccatcctttgt 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12343705 caggtgactgctgaggttggaaagctcttgggtgcagagaaggtggacgccatcctttgt 12343646
Query: 429 gtggccggaggatgggctgggggcaatgccaagtccaagt 468
||||||||||||||||||||||||||||||||||||||||
Sbjct: 12343645 gtggccggaggatgggctgggggcaatgccaagtccaagt 12343606
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Minus
Query: 278 gtgggtcgccagcatcgacgtggtggagaatgaagaggccagtgccaatgtcgtcgttaa 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12349340 gtgggtcgccagcatcgacgtggtggagaatgaagaggccagtgccaatgtcgtcgttaa 12349281
Query: 338 aatgacagactcgtttacggagcaggccgaccaggt 373
||||||||||||||||||||||||||||||||||||
Sbjct: 12349280 aatgacagactcgtttacggagcaggccgaccaggt 12349245
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 719 ggtcaccctggacacgcccttgaacaggaagtcgatgccccacgcggacttcagctcctg 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12334578 ggtcaccctggacacgcccttgaacaggaagtcgatgccccacgcggacttcagctcctg 12334519
Query: 779 gacgcccttagaattcctggtcga 802
||||||||||||||||||||||||
Sbjct: 12334518 gacgcccttagaattcctggtcga 12334495
Score = 109 bits (55), Expect = 4e-21
Identities = 55/55 (100%)
Strand = Plus / Minus
Query: 43 gctaggcggcagcagcgggctcggccgtcagcgcggccaccgcgcggtccctctt 97
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12351860 gctaggcggcagcagcgggctcggccgtcagcgcggccaccgcgcggtccctctt 12351806
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,195,270
Number of extensions: 253
Number of successful extensions: 253
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 250
Number of HSP's successfully gapped: 8
Length of query: 1466
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1445
Effective length of database: 2,808,413,156
Effective search space: 4058157010420
Effective search space used: 4058157010420
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)