Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001533
(1268 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776718.1| lambda-crystallin homolog [Bos taurus]. 523 e-148
Alignment gi|NP_001039799.1| hydroxyacyl-coenzyme A dehydrogenase, mitoch... 92 1e-18
>ref|NP_776718.1| lambda-crystallin homolog [Bos taurus].
Length = 321
Score = 523 bits (1348), Expect = e-148
Identities = 257/319 (80%), Positives = 283/319 (88%)
Frame = +3
Query: 54 MASSASSTADGVAVVGSGLIGRSWAMLFASGGFRVKLYDIEQQQVTGALDTIRKEMKLLE 233
MAS SS GVAVVGSGLIGRSWAMLFAS GFRVKL+DIE +QVT AL ++RKEMK+LE
Sbjct: 1 MASPGSSAPGGVAVVGSGLIGRSWAMLFASAGFRVKLFDIEPRQVTDALVSLRKEMKMLE 60
Query: 234 QSGALKGSLGAEEQLALISGCSDLREAVEGTVHIQECVPENLELKQQLFAQLDQIVDGNV 413
SG LKG LGAEEQL+LISGCSDLREAVEG +H+QECVPENLELK++LFAQLD+I D +V
Sbjct: 61 LSGYLKGELGAEEQLSLISGCSDLREAVEGALHVQECVPENLELKRKLFAQLDKIADDHV 120
Query: 414 VXXXXXXXXXXXXXFAGLVHVRQCLVAHPVNPPYHVPLVELVPHPETAPATMDRTYALMR 593
+ FAGL HV+QCLVAHPVNPPY+VPLVELVPHPETAPAT+DRTYALMR
Sbjct: 121 ILSSSSSCLLPSKLFAGLAHVKQCLVAHPVNPPYYVPLVELVPHPETAPATVDRTYALMR 180
Query: 594 QIGQSPVRILKEVDGFALNRLQYALIGEAWRLVEAGIVSPGDLDLVMSDGLGLRYAFIGP 773
++GQSPVR+L+E+DGFALNRLQYA+I EAWRLVE G+VSPGDLDLVMSDGLGLRYAFIGP
Sbjct: 181 RVGQSPVRLLREIDGFALNRLQYAVIAEAWRLVEEGVVSPGDLDLVMSDGLGLRYAFIGP 240
Query: 774 LETMHLNAEGMLSYCDRYREGMKRVLKTFGPIPEFSGAVAEKVHQAMCVKVPDDPEHLAA 953
LETMHLNAEGMLSYCDRY EGMKRVLKTFGP+PEFSGA AEKVHQAMCVKVPDD EHLAA
Sbjct: 241 LETMHLNAEGMLSYCDRYGEGMKRVLKTFGPVPEFSGATAEKVHQAMCVKVPDDAEHLAA 300
Query: 954 RREWRDGCLMRLAKLKGQV 1010
RR WRDGCLMRLA+LK Q+
Sbjct: 301 RRAWRDGCLMRLAQLKHQL 319
>ref|NP_001039799.1| hydroxyacyl-coenzyme A dehydrogenase, mitochondrial [Bos taurus].
Length = 314
Score = 91.7 bits (226), Expect = 1e-18
Identities = 81/294 (27%), Positives = 128/294 (43%), Gaps = 12/294 (4%)
Frame = +3
Query: 54 MASSASSTADG-------VAVVGSGLIGRSWAMLFASGGFRVKLYDIEQQQVTGALDTIR 212
M+SS+S+ A V V+G GL+G A + A+ G V L D + + + I
Sbjct: 12 MSSSSSAAASAKKILVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILEKSRKGIE 71
Query: 213 KEMKLLEQSGALKGSLGAEE----QLALISGCSDLREAVEGTVHIQECVPENLELKQQLF 380
+ ++ + + K GA+E L+ IS +D V T + E + ENL++K +LF
Sbjct: 72 ESLRKVAKKKFAKNPKGADEFVAKTLSSISTSTDAASVVHSTDLVVEAIVENLQMKNELF 131
Query: 381 AQLDQIVDGNVVXXXXXXXXXXXXXFAGLVHVRQCLVAHPVNPPYHVPLVELVPHPETAP 560
+LD+ + + + H NP + LVE++ P T+
Sbjct: 132 KRLDKFAAEHTIFASNTSSLQITSLANSTTRQDRFAGLHFFNPVPLMKLVEVIKTPMTSQ 191
Query: 561 ATMDRTYALMRQIGQSPVRILKEVDGFALNRLQYALIGEAWRLVEAGIVSPGDLDLVMSD 740
T + R +G+ PV K+ GF +NRL + EA RL E G S D+D+ M
Sbjct: 192 KTFESLLDFSRALGKHPVAC-KDTPGFIVNRLLVPYLMEAVRLCERGEASKEDIDMAMKL 250
Query: 741 GLGLRYAFIGPLETM-HLNAEGMLSYCDRYREGMKRVLKTFGPIPEFSGAVAEK 899
G G +GP E + ++ + D + E M F P P + VAEK
Sbjct: 251 GAGYP---MGPFELLDYVGLDTTKFILDGWHE-MDSKNPLFQPCPSLNKLVAEK 300
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 51,304,887
Number of extensions: 1528853
Number of successful extensions: 7912
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7866
Number of HSP's successfully gapped: 2
Length of query: 422
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 317
Effective length of database: 14,207,134
Effective search space: 4503661478
Effective search space used: 4503661478
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001533
(1268 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_543175.2| PREDICTED: similar to crystallin, lamda 1 isofo... 512 e-145
Alignment gi|XP_860418.1| PREDICTED: similar to crystallin, lamda 1 isofo... 503 e-142
Alignment gi|XP_535685.2| PREDICTED: similar to Short chain 3-hydroxyacyl... 85 1e-16
>ref|XP_543175.2| PREDICTED: similar to crystallin, lamda 1 isoform 1 [Canis
familiaris].
Length = 319
Score = 512 bits (1319), Expect = e-145
Identities = 250/316 (79%), Positives = 280/316 (88%)
Frame = +3
Query: 66 ASSTADGVAVVGSGLIGRSWAMLFASGGFRVKLYDIEQQQVTGALDTIRKEMKLLEQSGA 245
ASS V ++GSGLIGRSWAMLFASGGF+VKLYDIEQQQVT AL+TIRKEMK+LEQSG+
Sbjct: 2 ASSEPGDVLILGSGLIGRSWAMLFASGGFKVKLYDIEQQQVTNALETIRKEMKILEQSGS 61
Query: 246 LKGSLGAEEQLALISGCSDLREAVEGTVHIQECVPENLELKQQLFAQLDQIVDGNVVXXX 425
L+GSL +EEQL+LISGCS+++ AVEG HIQECVPENLELK+++FAQLDQIVD VV
Sbjct: 62 LRGSLSSEEQLSLISGCSNIQAAVEGAGHIQECVPENLELKKKIFAQLDQIVDDKVVLSS 121
Query: 426 XXXXXXXXXXFAGLVHVRQCLVAHPVNPPYHVPLVELVPHPETAPATMDRTYALMRQIGQ 605
FAGL HV+QCLV HPVNPPY+VPLVELVPHPETAPATMDRTYALM++IGQ
Sbjct: 122 STSCLLPSKLFAGLAHVKQCLVVHPVNPPYYVPLVELVPHPETAPATMDRTYALMQKIGQ 181
Query: 606 SPVRILKEVDGFALNRLQYALIGEAWRLVEAGIVSPGDLDLVMSDGLGLRYAFIGPLETM 785
SPVRI+KE++GFALNRLQYA+IGEAWRLVE GIVSP DLDLVMSDGLG+RYAFIGPLETM
Sbjct: 182 SPVRIMKEIEGFALNRLQYAIIGEAWRLVEEGIVSPSDLDLVMSDGLGMRYAFIGPLETM 241
Query: 786 HLNAEGMLSYCDRYREGMKRVLKTFGPIPEFSGAVAEKVHQAMCVKVPDDPEHLAARREW 965
HLNAEGML+YCDRYREGMKRVLKTFGPIP+FS A EKV+QAMCV VPDDPEHL ARR+W
Sbjct: 242 HLNAEGMLNYCDRYREGMKRVLKTFGPIPDFSRATTEKVNQAMCVNVPDDPEHLGARRQW 301
Query: 966 RDGCLMRLAKLKGQVQ 1013
RD CL+RLAKLK Q+Q
Sbjct: 302 RDECLLRLAKLKRQMQ 317
>ref|XP_860418.1| PREDICTED: similar to crystallin, lamda 1 isoform 3 [Canis
familiaris].
Length = 331
Score = 503 bits (1294), Expect = e-142
Identities = 244/303 (80%), Positives = 272/303 (89%)
Frame = +3
Query: 105 GLIGRSWAMLFASGGFRVKLYDIEQQQVTGALDTIRKEMKLLEQSGALKGSLGAEEQLAL 284
GLIGRSWAMLFASGGF+VKLYDIEQQQVT AL+TIRKEMK+LEQSG+L+GSL +EEQL+L
Sbjct: 27 GLIGRSWAMLFASGGFKVKLYDIEQQQVTNALETIRKEMKILEQSGSLRGSLSSEEQLSL 86
Query: 285 ISGCSDLREAVEGTVHIQECVPENLELKQQLFAQLDQIVDGNVVXXXXXXXXXXXXXFAG 464
ISGCS+++ AVEG HIQECVPENLELK+++FAQLDQIVD VV FAG
Sbjct: 87 ISGCSNIQAAVEGAGHIQECVPENLELKKKIFAQLDQIVDDKVVLSSSTSCLLPSKLFAG 146
Query: 465 LVHVRQCLVAHPVNPPYHVPLVELVPHPETAPATMDRTYALMRQIGQSPVRILKEVDGFA 644
L HV+QCLV HPVNPPY+VPLVELVPHPETAPATMDRTYALM++IGQSPVRI+KE++GFA
Sbjct: 147 LAHVKQCLVVHPVNPPYYVPLVELVPHPETAPATMDRTYALMQKIGQSPVRIMKEIEGFA 206
Query: 645 LNRLQYALIGEAWRLVEAGIVSPGDLDLVMSDGLGLRYAFIGPLETMHLNAEGMLSYCDR 824
LNRLQYA+IGEAWRLVE GIVSP DLDLVMSDGLG+RYAFIGPLETMHLNAEGML+YCDR
Sbjct: 207 LNRLQYAIIGEAWRLVEEGIVSPSDLDLVMSDGLGMRYAFIGPLETMHLNAEGMLNYCDR 266
Query: 825 YREGMKRVLKTFGPIPEFSGAVAEKVHQAMCVKVPDDPEHLAARREWRDGCLMRLAKLKG 1004
YREGMKRVLKTFGPIP+FS A EKV+QAMCV VPDDPEHL ARR+WRD CL+RLAKLK
Sbjct: 267 YREGMKRVLKTFGPIPDFSRATTEKVNQAMCVNVPDDPEHLGARRQWRDECLLRLAKLKR 326
Query: 1005 QVQ 1013
Q+Q
Sbjct: 327 QMQ 329
>ref|XP_535685.2| PREDICTED: similar to Short chain 3-hydroxyacyl-CoA dehydrogenase,
mitochondrial precursor (HCDH) (Medium and short chain
L-3-hydroxyacyl-coenzyme A dehydrogenase) isoform 1
[Canis familiaris].
Length = 312
Score = 85.1 bits (209), Expect = 1e-16
Identities = 81/290 (27%), Positives = 122/290 (42%), Gaps = 12/290 (4%)
Frame = +3
Query: 63 SASSTADG-------VAVVGSGLIGRSWAMLFASGGFRVKLYD----IEQQQVTGALDTI 209
S+SSTA V V+G GL+G A + A+ G V L D I + G +++
Sbjct: 13 SSSSTASAKKIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESL 72
Query: 210 RKEMKLLEQSGALKGSLGAEEQLALISGCSDLREAVEGTVHIQECVPENLELKQQLFAQL 389
R+ K G E+ L+ IS +D V T + E + ENL+ K +LF +L
Sbjct: 73 RRVAKKKFAENPKAGDEFVEKTLSSISTSTDAASVVHSTDLVVEAIVENLKAKNELFKRL 132
Query: 390 DQIVDGNVVXXXXXXXXXXXXXFAGLVHVRQCLVAHPVNPPYHVPLVELVPHPETAPATM 569
D+ + + + H NP + LVE++ P T+ T
Sbjct: 133 DKFASEHTIFASNTSSLQITNIANATTRQDRFAGLHFFNPVPLMKLVEVIKTPMTSQKTY 192
Query: 570 DRTYALMRQIGQSPVRILKEVDGFALNRLQYALIGEAWRLVEAGIVSPGDLDLVMSDGLG 749
+ + +G+ PV K+ GF +NRL + EA RL E G S D+D M G G
Sbjct: 193 ESLIDFTKVLGKHPVS-CKDTPGFIVNRLLIPYLMEAIRLYERGDASKEDIDTAMKLGAG 251
Query: 750 LRYAFIGPLETM-HLNAEGMLSYCDRYREGMKRVLKTFGPIPEFSGAVAE 896
+GP E + ++ + D + E M F PIP + VAE
Sbjct: 252 YP---LGPFELLDYVGLDTTKFIMDGWYE-MDPKNPLFQPIPSLNKLVAE 297
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 53,568,197
Number of extensions: 1576695
Number of successful extensions: 8028
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7995
Number of HSP's successfully gapped: 3
Length of query: 422
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 317
Effective length of database: 15,374,224
Effective search space: 4873629008
Effective search space used: 4873629008
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001533
(1268 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057058.2| lambda-crystallin homolog [Homo sapiens]. 492 e-139
Alignment gi|NP_005318.3| hydroxyacyl-coenzyme A dehydrogenase, mitochond... 82 1e-15
Alignment gi|NP_001171634.2| hydroxyacyl-coenzyme A dehydrogenase, mitoch... 73 6e-13
Alignment gi|NP_001159887.1| peroxisomal bifunctional enzyme isoform 2 [H... 51 2e-06
Alignment gi|NP_001957.2| peroxisomal bifunctional enzyme isoform 1 [Homo... 51 2e-06
>ref|NP_057058.2| lambda-crystallin homolog [Homo sapiens].
Length = 319
Score = 492 bits (1267), Expect = e-139
Identities = 238/316 (75%), Positives = 274/316 (86%)
Frame = +3
Query: 66 ASSTADGVAVVGSGLIGRSWAMLFASGGFRVKLYDIEQQQVTGALDTIRKEMKLLEQSGA 245
ASS A V +VGSG+IGRSWAMLFASGGF+VKLYDIEQQQ+ AL+ IRKEMKLLEQ+G+
Sbjct: 2 ASSAAGCVVIVGSGVIGRSWAMLFASGGFQVKLYDIEQQQIRNALENIRKEMKLLEQAGS 61
Query: 246 LKGSLGAEEQLALISGCSDLREAVEGTVHIQECVPENLELKQQLFAQLDQIVDGNVVXXX 425
LKGSL EEQL+LISGC +++EAVEG +HIQECVPE+LELK+++FAQLD I+D V+
Sbjct: 62 LKGSLSVEEQLSLISGCPNIQEAVEGAMHIQECVPEDLELKKKIFAQLDSIIDDRVILSS 121
Query: 426 XXXXXXXXXXFAGLVHVRQCLVAHPVNPPYHVPLVELVPHPETAPATMDRTYALMRQIGQ 605
FAGLVHV+QC+VAHPVNPPY++PLVELVPHPETAP T+DRT+ALM++IGQ
Sbjct: 122 STSCLMPSKLFAGLVHVKQCIVAHPVNPPYYIPLVELVPHPETAPTTVDRTHALMKKIGQ 181
Query: 606 SPVRILKEVDGFALNRLQYALIGEAWRLVEAGIVSPGDLDLVMSDGLGLRYAFIGPLETM 785
P+R+ KEV GF LNRLQYA+I EAWRLVE GIVSP DLDLVMS+GLG+RYAFIGPLETM
Sbjct: 182 CPMRVQKEVAGFVLNRLQYAIISEAWRLVEEGIVSPSDLDLVMSEGLGMRYAFIGPLETM 241
Query: 786 HLNAEGMLSYCDRYREGMKRVLKTFGPIPEFSGAVAEKVHQAMCVKVPDDPEHLAARREW 965
HLNAEGMLSYCDRY EG+K VL+TFGPIPEFS A AEKV+Q MC+KVPDDPEHLAARR+W
Sbjct: 242 HLNAEGMLSYCDRYSEGIKHVLQTFGPIPEFSRATAEKVNQDMCMKVPDDPEHLAARRQW 301
Query: 966 RDGCLMRLAKLKGQVQ 1013
RD CLMRLAKLK QVQ
Sbjct: 302 RDECLMRLAKLKSQVQ 317
>ref|NP_005318.3| hydroxyacyl-coenzyme A dehydrogenase, mitochondrial isoform 2
precursor [Homo sapiens].
Length = 314
Score = 82.0 bits (201), Expect = 1e-15
Identities = 71/254 (27%), Positives = 108/254 (42%), Gaps = 13/254 (5%)
Frame = +3
Query: 63 SASSTADG---------VAVVGSGLIGRSWAMLFASGGFRVKLYD----IEQQQVTGALD 203
S+SSTA V V+G GL+G A + A+ G V L D I + G +
Sbjct: 13 SSSSTASASAKKIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEE 72
Query: 204 TIRKEMKLLEQSGALKGSLGAEEQLALISGCSDLREAVEGTVHIQECVPENLELKQQLFA 383
++RK K G E+ L+ I+ +D V T + E + ENL++K +LF
Sbjct: 73 SLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFK 132
Query: 384 QLDQIVDGNVVXXXXXXXXXXXXXFAGLVHVRQCLVAHPVNPPYHVPLVELVPHPETAPA 563
+LD+ + + + H NP + LVE++ P T+
Sbjct: 133 RLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQK 192
Query: 564 TMDRTYALMRQIGQSPVRILKEVDGFALNRLQYALIGEAWRLVEAGIVSPGDLDLVMSDG 743
T + + +G+ PV K+ GF +NRL + EA RL E G S D+D M G
Sbjct: 193 TFESLVDFSKALGKHPVS-CKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLG 251
Query: 744 LGLRYAFIGPLETM 785
G +GP E +
Sbjct: 252 AGYP---MGPFELL 262
>ref|NP_001171634.2| hydroxyacyl-coenzyme A dehydrogenase, mitochondrial isoform 1
precursor [Homo sapiens].
Length = 331
Score = 72.8 bits (177), Expect = 6e-13
Identities = 66/242 (27%), Positives = 102/242 (42%), Gaps = 13/242 (5%)
Frame = +3
Query: 63 SASSTADG---------VAVVGSGLIGRSWAMLFASGGFRVKLYD----IEQQQVTGALD 203
S+SSTA V V+G GL+G A + A+ G V L D I + G +
Sbjct: 13 SSSSTASASAKKIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEE 72
Query: 204 TIRKEMKLLEQSGALKGSLGAEEQLALISGCSDLREAVEGTVHIQECVPENLELKQQLFA 383
++RK K G E+ L+ I+ +D V T + E + ENL++K +LF
Sbjct: 73 SLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFK 132
Query: 384 QLDQIVDGNVVXXXXXXXXXXXXXFAGLVHVRQCLVAHPVNPPYHVPLVELVPHPETAPA 563
+LD+ + + + H NP + LVE++ P T+
Sbjct: 133 RLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQK 192
Query: 564 TMDRTYALMRQIGQSPVRILKEVDGFALNRLQYALIGEAWRLVEAGIVSPGDLDLVMSDG 743
T + + +G+ PV K+ GF +NRL + EA RL E + GD + G
Sbjct: 193 TFESLVDFSKALGKHPVS-CKDTPGFIVNRLLVPYLMEAIRLYERDFQTCGD----SNSG 247
Query: 744 LG 749
LG
Sbjct: 248 LG 249
>ref|NP_001159887.1| peroxisomal bifunctional enzyme isoform 2 [Homo sapiens].
Length = 627
Score = 51.2 bits (121), Expect = 2e-06
Identities = 53/231 (22%), Positives = 100/231 (43%), Gaps = 4/231 (1%)
Frame = +3
Query: 60 SSASSTADGVAVVGSGLIGRSWAMLFASGGFRVKLYDIEQQQVTGA----LDTIRKEMKL 227
++++ V VVG G +GR + FA V D ++ Q+ A + KE
Sbjct: 195 TASARPVSSVGVVGLGTMGRGIVISFARARIPVIAVDSDKNQLATANKMITSVLEKEASK 254
Query: 228 LEQSGALKGSLGAEEQLALISGCSDLREAVEGTVHIQECVPENLELKQQLFAQLDQIVDG 407
++QSG G + +L S ++E + G + E V E + LK+Q+FA+L +
Sbjct: 255 MQQSG--HPWSGPKPRLT-----SSVKE-LGGVDLVIEAVFEEMSLKKQVFAELSAVCKP 306
Query: 408 NVVXXXXXXXXXXXXXFAGLVHVRQCLVAHPVNPPYHVPLVELVPHPETAPATMDRTYAL 587
+ + H +P + + L+E++P ++P T+ L
Sbjct: 307 EAFLCTNTSALDVDEIASSTDRPHLVIGTHFFSPAHVMKLLEVIPSQYSSPTTIATVMNL 366
Query: 588 MRQIGQSPVRILKEVDGFALNRLQYALIGEAWRLVEAGIVSPGDLDLVMSD 740
++I + V ++ GF NR+ +A+ L+E G P ++D V+ +
Sbjct: 367 SKKIKKIGV-VVGNCFGFVGNRMLNPYYNQAYFLLEEG-SKPEEVDQVLEE 415
>ref|NP_001957.2| peroxisomal bifunctional enzyme isoform 1 [Homo sapiens].
Length = 723
Score = 51.2 bits (121), Expect = 2e-06
Identities = 53/231 (22%), Positives = 100/231 (43%), Gaps = 4/231 (1%)
Frame = +3
Query: 60 SSASSTADGVAVVGSGLIGRSWAMLFASGGFRVKLYDIEQQQVTGA----LDTIRKEMKL 227
++++ V VVG G +GR + FA V D ++ Q+ A + KE
Sbjct: 291 TASARPVSSVGVVGLGTMGRGIVISFARARIPVIAVDSDKNQLATANKMITSVLEKEASK 350
Query: 228 LEQSGALKGSLGAEEQLALISGCSDLREAVEGTVHIQECVPENLELKQQLFAQLDQIVDG 407
++QSG G + +L S ++E + G + E V E + LK+Q+FA+L +
Sbjct: 351 MQQSG--HPWSGPKPRLT-----SSVKE-LGGVDLVIEAVFEEMSLKKQVFAELSAVCKP 402
Query: 408 NVVXXXXXXXXXXXXXFAGLVHVRQCLVAHPVNPPYHVPLVELVPHPETAPATMDRTYAL 587
+ + H +P + + L+E++P ++P T+ L
Sbjct: 403 EAFLCTNTSALDVDEIASSTDRPHLVIGTHFFSPAHVMKLLEVIPSQYSSPTTIATVMNL 462
Query: 588 MRQIGQSPVRILKEVDGFALNRLQYALIGEAWRLVEAGIVSPGDLDLVMSD 740
++I + V ++ GF NR+ +A+ L+E G P ++D V+ +
Sbjct: 463 SKKIKKIGV-VVGNCFGFVGNRMLNPYYNQAYFLLEEG-SKPEEVDQVLEE 511
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 52,349,426
Number of extensions: 1525982
Number of successful extensions: 7349
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 7319
Number of HSP's successfully gapped: 5
Length of query: 422
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 317
Effective length of database: 14,835,944
Effective search space: 4702994248
Effective search space used: 4702994248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001533
(1268 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_084280.2| lambda-crystallin homolog [Mus musculus]. 497 e-141
Alignment gi|NP_032238.2| hydroxyacyl-coenzyme A dehydrogenase, mitochond... 86 8e-17
>ref|NP_084280.2| lambda-crystallin homolog [Mus musculus].
Length = 319
Score = 497 bits (1279), Expect = e-141
Identities = 240/316 (75%), Positives = 273/316 (86%)
Frame = +3
Query: 66 ASSTADGVAVVGSGLIGRSWAMLFASGGFRVKLYDIEQQQVTGALDTIRKEMKLLEQSGA 245
AS A GV +VGSGLIGRSWAMLFASGGF+VKLYDIEQQQ+T AL+ IRKEMK LEQSG+
Sbjct: 2 ASPAAGGVVIVGSGLIGRSWAMLFASGGFKVKLYDIEQQQITDALENIRKEMKSLEQSGS 61
Query: 246 LKGSLGAEEQLALISGCSDLREAVEGTVHIQECVPENLELKQQLFAQLDQIVDGNVVXXX 425
LKGSL AE QL+LISGC +L EAVEG VHIQECVPENLELK+++FAQLD+IVD V+
Sbjct: 62 LKGSLSAERQLSLISGCGNLAEAVEGAVHIQECVPENLELKKKIFAQLDRIVDDRVILSS 121
Query: 426 XXXXXXXXXXFAGLVHVRQCLVAHPVNPPYHVPLVELVPHPETAPATMDRTYALMRQIGQ 605
F+GL HV+QC+VAHPVNPPY+VPLVELVPHPETAPATMDRTYALM++IGQ
Sbjct: 122 SSSCLLPSKLFSGLAHVKQCIVAHPVNPPYYVPLVELVPHPETAPATMDRTYALMKKIGQ 181
Query: 606 SPVRILKEVDGFALNRLQYALIGEAWRLVEAGIVSPGDLDLVMSDGLGLRYAFIGPLETM 785
SPVR+LKE+DGF LNRLQYA+I EAWRLVE IVSP DLDLVMSDGLG+RYAFIGPLETM
Sbjct: 182 SPVRVLKEIDGFVLNRLQYAVISEAWRLVEEEIVSPSDLDLVMSDGLGMRYAFIGPLETM 241
Query: 786 HLNAEGMLSYCDRYREGMKRVLKTFGPIPEFSGAVAEKVHQAMCVKVPDDPEHLAARREW 965
HLNAEG++SYC+RY EGMK VL TFGP+PEFSGA E+V + MC+KVPDDPEHLAARR+W
Sbjct: 242 HLNAEGVISYCERYSEGMKHVLSTFGPVPEFSGATVERVSEDMCMKVPDDPEHLAARRQW 301
Query: 966 RDGCLMRLAKLKGQVQ 1013
RD CLM+L+ LK Q+Q
Sbjct: 302 RDDCLMKLSILKYQMQ 317
>ref|NP_032238.2| hydroxyacyl-coenzyme A dehydrogenase, mitochondrial precursor [Mus
musculus].
Length = 314
Score = 85.5 bits (210), Expect = 8e-17
Identities = 79/294 (26%), Positives = 127/294 (43%), Gaps = 12/294 (4%)
Frame = +3
Query: 54 MASSASSTADG-------VAVVGSGLIGRSWAMLFASGGFRVKLYD----IEQQQVTGAL 200
M+SS+S++A V V+G GL+G A + A+ G V L D I + G
Sbjct: 12 MSSSSSASAAAKKILIKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIE 71
Query: 201 DTIRKEMKLLEQSGALKGSLGAEEQLALISGCSDLREAVEGTVHIQECVPENLELKQQLF 380
+++++ K G E+ L+ +S +D V T + E + ENL+LK +LF
Sbjct: 72 ESLKRMAKKKFTENPKAGDEFVEKTLSCLSTSTDAASVVHSTDLVVEAIVENLKLKNELF 131
Query: 381 AQLDQIVDGNVVXXXXXXXXXXXXXFAGLVHVRQCLVAHPVNPPYHVPLVELVPHPETAP 560
+LD+ + + + H NP + LVE++ P T+
Sbjct: 132 QRLDKFAAEHTIFASNTSSLQITNIANATTRQDRFAGLHFFNPVPMMKLVEVIKTPMTSQ 191
Query: 561 ATMDRTYALMRQIGQSPVRILKEVDGFALNRLQYALIGEAWRLVEAGIVSPGDLDLVMSD 740
T + + +G+ PV K+ GF +NRL + EA RL E G S D+D M
Sbjct: 192 KTFESLVDFCKTLGKHPVS-CKDTPGFIVNRLLVPYLIEAVRLHERGDASKEDIDTAMKL 250
Query: 741 GLGLRYAFIGPLETM-HLNAEGMLSYCDRYREGMKRVLKTFGPIPEFSGAVAEK 899
G G +GP E + ++ + D + E M+ F P P + VA+K
Sbjct: 251 GAGYP---MGPFELLDYVGLDTTKFILDGWHE-MEPENPLFQPSPSMNNLVAQK 300
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 43,915,048
Number of extensions: 1255823
Number of successful extensions: 5689
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5664
Number of HSP's successfully gapped: 2
Length of query: 422
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 318
Effective length of database: 12,493,815
Effective search space: 3973033170
Effective search space used: 3973033170
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001533
(1268 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999046.1| lambda-crystallin homolog [Sus scrofa]. 600 e-172
Alignment gi|XP_003357846.1| PREDICTED: lambda-crystallin homolog [Sus sc... 149 3e-36
Alignment gi|NP_999496.1| hydroxyacyl-coenzyme A dehydrogenase, mitochond... 85 7e-17
>ref|NP_999046.1| lambda-crystallin homolog [Sus scrofa].
Length = 322
Score = 600 bits (1546), Expect = e-172
Identities = 304/320 (95%), Positives = 305/320 (95%)
Frame = +3
Query: 54 MASSASSTADGVAVVGSGLIGRSWAMLFASGGFRVKLYDIEQQQVTGALDTIRKEMKLLE 233
MASSASSTADGVAVVGSGLIGRSWAMLFASGGFRVKLYDIEQQQVTGALDTIRKEMKLLE
Sbjct: 1 MASSASSTADGVAVVGSGLIGRSWAMLFASGGFRVKLYDIEQQQVTGALDTIRKEMKLLE 60
Query: 234 QSGALKGSLGAEEQLALISGCSDLREAVEGTVHIQECVPENLELKQQLFAQLDQIVDGNV 413
QSGALKGSLGAEEQLALISGCSDLREAVEGTVHIQECVPENLELKQQLFAQLDQIVDGNV
Sbjct: 61 QSGALKGSLGAEEQLALISGCSDLREAVEGTVHIQECVPENLELKQQLFAQLDQIVDGNV 120
Query: 414 VXXXXXXXXXXXXXFAGLVHVRQCLVAHPVNPPYHVPLVELVPHPETAPATMDRTYALMR 593
V FAGLVHVRQCLVAHPVNPPYHVPLVELVPHPETAPATM RTYALMR
Sbjct: 121 VLSSSSSCLLPSKLFAGLVHVRQCLVAHPVNPPYHVPLVELVPHPETAPATMARTYALMR 180
Query: 594 QIGQSPVRILKEVDGFALNRLQYALIGEAWRLVEAGIVSPGDLDLVMSDGLGLRYAFIGP 773
QIGQSPVRILKEVDGFALNRLQYALIGEAWRLVEA IVSPGDLDLVMSDGLGLRYAFIGP
Sbjct: 181 QIGQSPVRILKEVDGFALNRLQYALIGEAWRLVEARIVSPGDLDLVMSDGLGLRYAFIGP 240
Query: 774 LETMHLNAEGMLSYCDRYREGMKRVLKTFGPIPEFSGAVAEKVHQAMCVKVPDDPEHLAA 953
LETMHLNAEGMLSYCDRYREGMKRVLKTFGPIPEFSGAVAEKVHQAMCVKVPDDPEHL+A
Sbjct: 241 LETMHLNAEGMLSYCDRYREGMKRVLKTFGPIPEFSGAVAEKVHQAMCVKVPDDPEHLSA 300
Query: 954 RREWRDGCLMRLAKLKGQVQ 1013
RREWRDGCLMRLAKLKGQVQ
Sbjct: 301 RREWRDGCLMRLAKLKGQVQ 320
>ref|XP_003357846.1| PREDICTED: lambda-crystallin homolog [Sus scrofa].
Length = 72
Score = 149 bits (376), Expect = 3e-36
Identities = 70/70 (100%), Positives = 70/70 (100%)
Frame = +3
Query: 804 MLSYCDRYREGMKRVLKTFGPIPEFSGAVAEKVHQAMCVKVPDDPEHLAARREWRDGCLM 983
MLSYCDRYREGMKRVLKTFGPIPEFSGAVAEKVHQAMCVKVPDDPEHLAARREWRDGCLM
Sbjct: 1 MLSYCDRYREGMKRVLKTFGPIPEFSGAVAEKVHQAMCVKVPDDPEHLAARREWRDGCLM 60
Query: 984 RLAKLKGQVQ 1013
RLAKLKGQVQ
Sbjct: 61 RLAKLKGQVQ 70
>ref|NP_999496.1| hydroxyacyl-coenzyme A dehydrogenase, mitochondrial precursor [Sus
scrofa].
Length = 314
Score = 85.1 bits (209), Expect = 7e-17
Identities = 79/285 (27%), Positives = 120/285 (42%), Gaps = 5/285 (1%)
Frame = +3
Query: 57 ASSASSTADGVAVVGSGLIGRSWAMLFASGGFRVKLYD----IEQQQVTGALDTIRKEMK 224
AS+ V V+G GL+G A + A+ G V L D I + G +++RK K
Sbjct: 20 ASAKKILVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAK 79
Query: 225 LLEQSGALKGSLGAEEQLALISGCSDLREAVEGTVHIQECVPENLELKQQLFAQLDQIVD 404
G E+ L+ IS +D V T + E + ENL++K +LF +LD+
Sbjct: 80 KKFAENPKAGDEFVEKTLSSISTSTDAASVVHSTDLVVEAIVENLKVKSELFKRLDKFAA 139
Query: 405 GNVVXXXXXXXXXXXXXFAGLVHVRQCLVAHPVNPPYHVPLVELVPHPETAPATMDRTYA 584
+ + + H NP + LVE+V P T+ T++
Sbjct: 140 EHTIFASNTSSLQITSLANATTRQDRFAGLHFFNPVPLMKLVEVVKTPMTSQKTLESLVD 199
Query: 585 LMRQIGQSPVRILKEVDGFALNRLQYALIGEAWRLVEAGIVSPGDLDLVMSDGLGLRYAF 764
+ +G+ PV K+ GF +NRL + EA RL E G S D+D M G G
Sbjct: 200 FSKTLGKHPVS-CKDTPGFIVNRLLVPYLIEAVRLYERGDASKEDIDTAMKLGAGYP--- 255
Query: 765 IGPLETM-HLNAEGMLSYCDRYREGMKRVLKTFGPIPEFSGAVAE 896
+GP E + ++ + D + E M F P P + VAE
Sbjct: 256 MGPFELLDYVGLDTTKFIIDGWHE-MDSQNPLFQPSPAMNKLVAE 299
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,176,167
Number of extensions: 990118
Number of successful extensions: 5104
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5080
Number of HSP's successfully gapped: 3
Length of query: 422
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 320
Effective length of database: 8,804,438
Effective search space: 2817420160
Effective search space used: 2817420160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001533
(1268 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr11 648 0.0
>Sscrofa_Chr11
|| Length = 87690581
Score = 648 bits (327), Expect = 0.0
Identities = 333/335 (99%)
Strand = Plus / Minus
Query: 905 ccaggccatgtgtgtgaaagttcccgatgacccagagcacttagctgcccgaagggagtg 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6311 ccaggccatgtgtgtgaaagttcccgatgacccagagcacttagctgcccgaagggagtg 6252
Query: 965 gagggatggctgcctcatgagactcgccaaactgaagggccaggtgcagccgccgtaagg 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6251 gagggatggctgcctcatgagactcgccaaactgaagggccaggtgcagccgccgtaagg 6192
Query: 1025 cctcccactgctcctgagtcctgcgcgcccccgtttcagacacatgccatcgccccgaga 1084
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6191 cctcccgctgctcctgagtcctgcgcgcccccgtttcagacacatgccatcgccccgaga 6132
Query: 1085 gcgccggaggccacaggaccttggctcgccgagtccgacacactcttgccttggcgggca 1144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6131 gcgccggaggccacaggaccttggctcgccgagtccgacacactcttgccttggcgggca 6072
Query: 1145 cggcggtggaaggctgggcctccgccccttctgactgtatcccacacttggggttgtcac 1204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6071 cggcggtggaaggctgggcctccgccccttctgactgtatcccacacttggggttgtcac 6012
Query: 1205 agccgcacttgggtgggagggctgctgaatccctg 1239
|||||||||||||||||||||||||||| ||||||
Sbjct: 6011 agccgcacttgggtgggagggctgctgagtccctg 5977
Score = 389 bits (196), Expect = e-105
Identities = 196/196 (100%)
Strand = Plus / Minus
Query: 501 gtaaacccgccctatcatgtcccgctggttgagctggtcccacacccggagacggccccc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25170 gtaaacccgccctatcatgtcccgctggttgagctggtcccacacccggagacggccccc 25111
Query: 561 gccacaatggaccgaacctacgccctgatgcggcagatcggccagtcccccgtccgcatc 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25110 gccacaatggaccgaacctacgccctgatgcggcagatcggccagtcccccgtccgcatc 25051
Query: 621 ctgaaggaggtggacggcttcgccctgaaccgcctgcagtacgcgctcatcggcgaggcc 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25050 ctgaaggaggtggacggcttcgccctgaaccgcctgcagtacgcgctcatcggcgaggcc 24991
Query: 681 tggcggctggtggagg 696
||||||||||||||||
Sbjct: 24990 tggcggctggtggagg 24975
Score = 335 bits (169), Expect = 4e-89
Identities = 169/169 (100%)
Strand = Plus / Minus
Query: 336 caggaatgtgttccggaaaacctagaactgaagcagcagctttttgctcagctggatcaa 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29639 caggaatgtgttccggaaaacctagaactgaagcagcagctttttgctcagctggatcaa 29580
Query: 396 atcgtcgatggtaacgtggtcctgagcagctccagctcctgcctcctgccatccaagctg 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29579 atcgtcgatggtaacgtggtcctgagcagctccagctcctgcctcctgccatccaagctg 29520
Query: 456 tttgctggcctggtgcacgtgcggcagtgccttgtggcgcatcctgtaa 504
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29519 tttgctggcctggtgcacgtgcggcagtgccttgtggcgcatcctgtaa 29471
Score = 256 bits (129), Expect = 3e-65
Identities = 129/129 (100%)
Strand = Plus / Minus
Query: 211 gaaaagagatgaagttgctggagcagtccggtgccctgaagggctcgctgggcgccgaag 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69554 gaaaagagatgaagttgctggagcagtccggtgccctgaagggctcgctgggcgccgaag 69495
Query: 271 agcagctggcgctcatcagcgggtgctccgacctccgggaggcagtagagggcacagtgc 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69494 agcagctggcgctcatcagcgggtgctccgacctccgggaggcagtagagggcacagtgc 69435
Query: 331 acatccagg 339
|||||||||
Sbjct: 69434 acatccagg 69426
Score = 210 bits (106), Expect = 1e-51
Identities = 109/110 (99%)
Strand = Plus / Minus
Query: 800 aggtatgctgagctactgtgacaggtaccgtgaaggcatgaaacgtgtcctaaagacttt 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7013 aggtatgctgagctactgtgacaggtaccgtgaaggcatgaaacgtgtcctaaagacttt 6954
Query: 860 tggacccattccagagttttccggggctgtggctgaaaaagtgcaccagg 909
||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 6953 tggacccattccagagttttccggggccgtggctgaaaaagtgcaccagg 6904
Score = 202 bits (102), Expect = 3e-49
Identities = 108/110 (98%)
Strand = Plus / Minus
Query: 694 aggcaggaatcgtgtctccgggcgacctggacctcgtcatgtccgacggcctgggcctgc 753
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 12905 aggcaggaatcgtgtctccgggtgacctggacctcgtcatgtccgacggcctgggcctgc 12846
Query: 754 gatacgcgttcatcggccccctggagaccatgcacctcaacgcggaaggt 803
||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 12845 gatacgcgttcatcggccccctggagaccatgcacctcaacgcagaaggt 12796
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Minus
Query: 3 agtgcccgggtggcgcgcgcggcagctgttggctctggcacggtgcgggccatggcgtcg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138311 agtgcccgggtggcgcgcgcggcagctgttggctctggcacggtgcgggccatggcgtcg 138252
Query: 63 tcagcgtcctcgacggccgacggggtggcggtggtgggcag 103
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 138251 tcagcgtcctcgacggccgacggggtggcggtggtgggcag 138211
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,508,832
Number of extensions: 165
Number of successful extensions: 165
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 7
Length of query: 1268
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1247
Effective length of database: 2,808,413,156
Effective search space: 3502091205532
Effective search space used: 3502091205532
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)