Animal-Genome cDNA 20110601C-001552

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001552
         (1461 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_776558.1| polyubiquitin-B [Bos taurus].                        446   e-125
Alignment   gi|NP_001193236.1| polyubiquitin-C [Bos taurus].                     445   e-125
Alignment   gi|XP_002695905.1| PREDICTED: Os05g0242100-like [Bos taurus].        322   5e-88
Alignment   gi|XP_002702199.1| PREDICTED: Os05g0242100-like [Bos taurus].        322   5e-88
Alignment   gi|XP_002701748.1| PREDICTED: Os05g0242100-like [Bos taurus].        267   2e-71
Alignment   gi|XP_002694610.1| PREDICTED: Os05g0242100-like [Bos taurus].        259   4e-69
Alignment   gi|XP_001251963.2| PREDICTED: ubiquitin B-like, partial [Bos ta...   160   3e-39
Alignment   gi|XP_002694527.1| PREDICTED: ubiquitin B-like [Bos taurus].         152   7e-37
Alignment   gi|NP_001069831.1| ubiquitin-60S ribosomal protein L40 [Bos tau...   151   1e-36
Alignment   gi|NP_777203.1| ubiquitin-40S ribosomal protein S27a [Bos tauru...   151   2e-36

>ref|NP_776558.1| polyubiquitin-B [Bos taurus].
          Length = 305

 Score =  446 bits (1147), Expect = e-125
 Identities = 230/237 (97%), Positives = 231/237 (97%)
 Frame = +1

Query: 223 LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 402
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 69  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128

Query: 403 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 582
           GRTL DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 129 GRTLFDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 188

Query: 583 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 762
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 189 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 248

Query: 763 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 933
           DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
Sbjct: 249 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 305



 Score =  442 bits (1137), Expect = e-124
 Identities = 227/228 (99%), Positives = 227/228 (99%)
 Frame = +1

Query: 247 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 426
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 427 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 606
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 607 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 786
           FAGKQLEDGRTL DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLFDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 787 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 930
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228


>ref|NP_001193236.1| polyubiquitin-C [Bos taurus].
          Length = 690

 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +1

Query: 223 LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 402
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 69  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128

Query: 403 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 582
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 129 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 188

Query: 583 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 762
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 189 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 248

Query: 763 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 930
           DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 249 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304



 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +1

Query: 223 LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 402
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 145 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 204

Query: 403 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 582
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 205 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 264

Query: 583 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 762
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 265 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 324

Query: 763 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 930
           DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 325 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 380



 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +1

Query: 223 LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 402
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 221 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 280

Query: 403 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 582
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 281 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 340

Query: 583 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 762
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 341 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 400

Query: 763 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 930
           DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 401 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 456



 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +1

Query: 223  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 402
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 297  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 356

Query: 403  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 582
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 357  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 416

Query: 583  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 762
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 417  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 476

Query: 763  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 930
            DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 477  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 532



 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +1

Query: 223  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 402
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 373  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 432

Query: 403  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 582
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 433  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 492

Query: 583  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 762
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 493  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 552

Query: 763  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 930
            DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 553  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 608



 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +1

Query: 223  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 402
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 449  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 508

Query: 403  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 582
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 509  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 568

Query: 583  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 762
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 569  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 628

Query: 763  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 930
            DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 629  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 684



 Score =  441 bits (1135), Expect = e-124
 Identities = 226/228 (99%), Positives = 227/228 (99%)
 Frame = +1

Query: 247 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 426
           MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 427 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 606
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 607 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 786
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 787 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 930
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228



 Score =  298 bits (764), Expect = 6e-81
 Identities = 154/161 (95%), Positives = 156/161 (96%)
 Frame = +1

Query: 223  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 402
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 525  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 584

Query: 403  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 582
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 585  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 644

Query: 583  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 705
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+
Sbjct: 645  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGV 685


>ref|XP_002695905.1| PREDICTED: Os05g0242100-like [Bos taurus].
          Length = 460

 Score =  322 bits (825), Expect = 5e-88
 Identities = 173/234 (73%), Positives = 185/234 (79%)
 Frame = -1

Query: 939 ELAATPQTEDQMESGLFLDVVIRKSAAIFQLLACKDEPLLVRGNAFXXXXXXXXXXXGVT 760
           +L  TPQTEDQ++  LFLDVVIRKSAAIFQLLA KDEPLLVRGNAF           GVT
Sbjct: 227 DLHTTPQTEDQVQGRLFLDVVIRKSAAIFQLLAGKDEPLLVRGNAFLILDLGLHVLDGVT 286

Query: 759 GLHLQGDGLAGQGLHEDLHTTPQTQNQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGN 580
           GLHLQGDGLAGQGLHEDLHTTPQT++Q++  LFLDVVIRKSAAIFQLLA KDEPLLVGGN
Sbjct: 287 GLHLQGDGLAGQGLHEDLHTTPQTEDQVQGRLFLDVVIRKSAAIFQLLAGKDEPLLVGGN 346

Query: 579 AFXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLHTTPQTQNQMEGGLFLDVVIRKSAAI 400
           A            GVTGLH QGDGLAGQGLHE+LHTTPQT++Q++G LFLDVVIRKSAAI
Sbjct: 347 ALLILDLGLHVLDGVTGLHFQGDGLAGQGLHENLHTTPQTEDQVQGRLFLDVVIRKSAAI 406

Query: 399 LQLLACKDEPLLVGGNAXXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLHFDL 238
            QLLA KDEPLLV GNA            GVTGLHLQGDGLAGQG HEDLHFDL
Sbjct: 407 FQLLAGKDEPLLVRGNAFLILDLGLHVLDGVTGLHLQGDGLAGQGFHEDLHFDL 460



 Score =  318 bits (816), Expect = 6e-87
 Identities = 171/232 (73%), Positives = 184/232 (79%)
 Frame = -1

Query: 942 GELAATPQTEDQMESGLFLDVVIRKSAAIFQLLACKDEPLLVRGNAFXXXXXXXXXXXGV 763
           G+ A TPQT+DQ++  LFLDVVIRKSAAIFQLLA KDEPLLVRGNAF           GV
Sbjct: 150 GKSATTPQTKDQVQGRLFLDVVIRKSAAIFQLLAGKDEPLLVRGNAFLILDLGLHVLDGV 209

Query: 762 TGLHLQGDGLAGQGLHEDLHTTPQTQNQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGG 583
           TGLH QGDGLAGQGLHEDLHTTPQT++Q++  LFLDVVIRKSAAIFQLLA KDEPLLV G
Sbjct: 210 TGLHFQGDGLAGQGLHEDLHTTPQTEDQVQGRLFLDVVIRKSAAIFQLLAGKDEPLLVRG 269

Query: 582 NAFXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLHTTPQTQNQMEGGLFLDVVIRKSAA 403
           NAF           GVTGLHLQGDGLAGQGLHEDLHTTPQT++Q++G LFLDVVIRKSAA
Sbjct: 270 NAFLILDLGLHVLDGVTGLHLQGDGLAGQGLHEDLHTTPQTEDQVQGRLFLDVVIRKSAA 329

Query: 402 ILQLLACKDEPLLVGGNAXXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLH 247
           I QLLA KDEPLLVGGNA            GVTGLH QGDGLAGQGLHE+LH
Sbjct: 330 IFQLLAGKDEPLLVGGNALLILDLGLHVLDGVTGLHFQGDGLAGQGLHENLH 381


>ref|XP_002702199.1| PREDICTED: Os05g0242100-like [Bos taurus].
          Length = 460

 Score =  322 bits (825), Expect = 5e-88
 Identities = 173/234 (73%), Positives = 185/234 (79%)
 Frame = -1

Query: 939 ELAATPQTEDQMESGLFLDVVIRKSAAIFQLLACKDEPLLVRGNAFXXXXXXXXXXXGVT 760
           +L  TPQTEDQ++  LFLDVVIRKSAAIFQLLA KDEPLLVRGNAF           GVT
Sbjct: 227 DLHTTPQTEDQVQGRLFLDVVIRKSAAIFQLLAGKDEPLLVRGNAFLILDLGLHVLDGVT 286

Query: 759 GLHLQGDGLAGQGLHEDLHTTPQTQNQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGN 580
           GLHLQGDGLAGQGLHEDLHTTPQT++Q++  LFLDVVIRKSAAIFQLLA KDEPLLVGGN
Sbjct: 287 GLHLQGDGLAGQGLHEDLHTTPQTEDQVQGRLFLDVVIRKSAAIFQLLAGKDEPLLVGGN 346

Query: 579 AFXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLHTTPQTQNQMEGGLFLDVVIRKSAAI 400
           A            GVTGLH QGDGLAGQGLHE+LHTTPQT++Q++G LFLDVVIRKSAAI
Sbjct: 347 ALLILDLGLHVLDGVTGLHFQGDGLAGQGLHENLHTTPQTEDQVQGRLFLDVVIRKSAAI 406

Query: 399 LQLLACKDEPLLVGGNAXXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLHFDL 238
            QLLA KDEPLLV GNA            GVTGLHLQGDGLAGQG HEDLHFDL
Sbjct: 407 FQLLAGKDEPLLVRGNAFLILDLGLHVLDGVTGLHLQGDGLAGQGFHEDLHFDL 460



 Score =  318 bits (816), Expect = 6e-87
 Identities = 171/232 (73%), Positives = 184/232 (79%)
 Frame = -1

Query: 942 GELAATPQTEDQMESGLFLDVVIRKSAAIFQLLACKDEPLLVRGNAFXXXXXXXXXXXGV 763
           G+ A TPQT+DQ++  LFLDVVIRKSAAIFQLLA KDEPLLVRGNAF           GV
Sbjct: 150 GKSATTPQTKDQVQGRLFLDVVIRKSAAIFQLLAGKDEPLLVRGNAFLILDLGLHVLDGV 209

Query: 762 TGLHLQGDGLAGQGLHEDLHTTPQTQNQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGG 583
           TGLH QGDGLAGQGLHEDLHTTPQT++Q++  LFLDVVIRKSAAIFQLLA KDEPLLV G
Sbjct: 210 TGLHFQGDGLAGQGLHEDLHTTPQTEDQVQGRLFLDVVIRKSAAIFQLLAGKDEPLLVRG 269

Query: 582 NAFXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLHTTPQTQNQMEGGLFLDVVIRKSAA 403
           NAF           GVTGLHLQGDGLAGQGLHEDLHTTPQT++Q++G LFLDVVIRKSAA
Sbjct: 270 NAFLILDLGLHVLDGVTGLHLQGDGLAGQGLHEDLHTTPQTEDQVQGRLFLDVVIRKSAA 329

Query: 402 ILQLLACKDEPLLVGGNAXXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLH 247
           I QLLA KDEPLLVGGNA            GVTGLH QGDGLAGQGLHE+LH
Sbjct: 330 IFQLLAGKDEPLLVGGNALLILDLGLHVLDGVTGLHFQGDGLAGQGLHENLH 381


>ref|XP_002701748.1| PREDICTED: Os05g0242100-like [Bos taurus].
          Length = 752

 Score =  267 bits (682), Expect = 2e-71
 Identities = 141/231 (61%), Positives = 167/231 (72%)
 Frame = -1

Query: 939  ELAATPQTEDQMESGLFLDVVIRKSAAIFQLLACKDEPLLVRGNAFXXXXXXXXXXXGVT 760
            +L  T + EDQ++SGLFLDVV+R+ AAIFQL   KD+PLLV G+A            GVT
Sbjct: 387  DLHPTSEAEDQVQSGLFLDVVVRQGAAIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVT 446

Query: 759  GLHLQGDGLAGQGLHEDLHTTPQTQNQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGN 580
            GLHLQGDGLAGQGLHEDLH T + ++Q++SGLFLDVV+R+ AAIFQL   KD+PLLV G+
Sbjct: 447  GLHLQGDGLAGQGLHEDLHPTSEAEDQVQSGLFLDVVVRQGAAIFQLFPGKDQPLLVWGD 506

Query: 579  AFXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLHTTPQTQNQMEGGLFLDVVIRKSAAI 400
            A            GVTGLHLQGDGLAGQGLHEDLH T + ++Q++ GLFLDVV+R+ A I
Sbjct: 507  ALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDLHPTSEAEDQVQSGLFLDVVVRQGAPI 566

Query: 399  LQLLACKDEPLLVGGNAXXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLH 247
             QL   KD+PLLV G+A            GVTGLHLQGDGLAGQGLHEDLH
Sbjct: 567  FQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDLH 617



 Score =  265 bits (676), Expect = 1e-70
 Identities = 140/231 (60%), Positives = 166/231 (71%)
 Frame = -1

Query: 939  ELAATPQTEDQMESGLFLDVVIRKSAAIFQLLACKDEPLLVRGNAFXXXXXXXXXXXGVT 760
            +L  T + EDQ++SGLFLDVV+R+ A IFQL   KD+PLLV G+A            GVT
Sbjct: 311  DLHPTSEAEDQVQSGLFLDVVVRQGAPIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVT 370

Query: 759  GLHLQGDGLAGQGLHEDLHTTPQTQNQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGN 580
            GLHLQ DGLAGQGLHEDLH T + ++Q++SGLFLDVV+R+ AAIFQL   KD+PLLV G+
Sbjct: 371  GLHLQSDGLAGQGLHEDLHPTSEAEDQVQSGLFLDVVVRQGAAIFQLFPGKDQPLLVWGD 430

Query: 579  AFXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLHTTPQTQNQMEGGLFLDVVIRKSAAI 400
            A            GVTGLHLQGDGLAGQGLHEDLH T + ++Q++ GLFLDVV+R+ AAI
Sbjct: 431  ALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDLHPTSEAEDQVQSGLFLDVVVRQGAAI 490

Query: 399  LQLLACKDEPLLVGGNAXXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLH 247
             QL   KD+PLLV G+A            GVTGLHLQGDGLAGQGLHEDLH
Sbjct: 491  FQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDLH 541



 Score =  262 bits (670), Expect = 5e-70
 Identities = 139/231 (60%), Positives = 165/231 (71%)
 Frame = -1

Query: 939 ELAATPQTEDQMESGLFLDVVIRKSAAIFQLLACKDEPLLVRGNAFXXXXXXXXXXXGVT 760
           +L  T + EDQ++SGLFLDVV+R+ AAIFQL   KD+PLLV G+A            GVT
Sbjct: 83  DLHPTSEAEDQVQSGLFLDVVVRQGAAIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVT 142

Query: 759 GLHLQGDGLAGQGLHEDLHTTPQTQNQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGN 580
           GLHLQ DGLAGQGLHEDLH T + ++Q++SGLFLDVV+R+ AAIFQL   KD+PLLV G+
Sbjct: 143 GLHLQSDGLAGQGLHEDLHPTSEAEDQVQSGLFLDVVVRQGAAIFQLFPGKDQPLLVWGD 202

Query: 579 AFXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLHTTPQTQNQMEGGLFLDVVIRKSAAI 400
           A            GVTGLHLQGDGLAGQGLHEDLH T + ++Q++ GL LDVV+R+ A I
Sbjct: 203 ALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDLHPTSEAEDQVQSGLLLDVVVRQGAPI 262

Query: 399 LQLLACKDEPLLVGGNAXXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLH 247
            QL   KD+PLLV G+A            GVTGLHLQGDGLAGQGLHEDLH
Sbjct: 263 FQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDLH 313



 Score =  262 bits (669), Expect = 7e-70
 Identities = 138/223 (61%), Positives = 163/223 (73%)
 Frame = -1

Query: 915 EDQMESGLFLDVVIRKSAAIFQLLACKDEPLLVRGNAFXXXXXXXXXXXGVTGLHLQGDG 736
           +DQ++SGLFLDVV+R+ AAIFQL   KD+PLLV G+A            GVTGLHLQGDG
Sbjct: 15  QDQVQSGLFLDVVVRQGAAIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGDG 74

Query: 735 LAGQGLHEDLHTTPQTQNQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGNAFXXXXXX 556
           LAGQGLHEDLH T + ++Q++SGLFLDVV+R+ AAIFQL   KD+PLLV G+A       
Sbjct: 75  LAGQGLHEDLHPTSEAEDQVQSGLFLDVVVRQGAAIFQLFPGKDQPLLVWGDALFVLDLG 134

Query: 555 XXXXXGVTGLHLQGDGLAGQGLHEDLHTTPQTQNQMEGGLFLDVVIRKSAAILQLLACKD 376
                GVTGLHLQ DGLAGQGLHEDLH T + ++Q++ GLFLDVV+R+ AAI QL   KD
Sbjct: 135 LDVLDGVTGLHLQSDGLAGQGLHEDLHPTSEAEDQVQSGLFLDVVVRQGAAIFQLFPGKD 194

Query: 375 EPLLVGGNAXXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLH 247
           +PLLV G+A            GVTGLHLQGDGLAGQGLHEDLH
Sbjct: 195 QPLLVWGDALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDLH 237



 Score =  260 bits (665), Expect = 2e-69
 Identities = 138/231 (59%), Positives = 164/231 (70%)
 Frame = -1

Query: 939 ELAATPQTEDQMESGLFLDVVIRKSAAIFQLLACKDEPLLVRGNAFXXXXXXXXXXXGVT 760
           +L  T + EDQ++SGLFLDVV+R+ AAIFQL   KD+PLLV G+A            GVT
Sbjct: 159 DLHPTSEAEDQVQSGLFLDVVVRQGAAIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVT 218

Query: 759 GLHLQGDGLAGQGLHEDLHTTPQTQNQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGN 580
           GLHLQGDGLAGQGLHEDLH T + ++Q++SGL LDVV+R+ A IFQL   KD+PLLV G+
Sbjct: 219 GLHLQGDGLAGQGLHEDLHPTSEAEDQVQSGLLLDVVVRQGAPIFQLFPGKDQPLLVWGD 278

Query: 579 AFXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLHTTPQTQNQMEGGLFLDVVIRKSAAI 400
           A            GVTGLHLQGDGLAGQGLHEDLH T + ++Q++ GLFLDVV+R+ A I
Sbjct: 279 ALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDLHPTSEAEDQVQSGLFLDVVVRQGAPI 338

Query: 399 LQLLACKDEPLLVGGNAXXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLH 247
            QL   KD+PLLV G+A            GVTGLHLQ DGLAGQGLHEDLH
Sbjct: 339 FQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQSDGLAGQGLHEDLH 389



 Score =  260 bits (665), Expect = 2e-69
 Identities = 138/231 (59%), Positives = 164/231 (70%)
 Frame = -1

Query: 939 ELAATPQTEDQMESGLFLDVVIRKSAAIFQLLACKDEPLLVRGNAFXXXXXXXXXXXGVT 760
           +L  T + EDQ++SGL LDVV+R+ A IFQL   KD+PLLV G+A            GVT
Sbjct: 235 DLHPTSEAEDQVQSGLLLDVVVRQGAPIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVT 294

Query: 759 GLHLQGDGLAGQGLHEDLHTTPQTQNQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGN 580
           GLHLQGDGLAGQGLHEDLH T + ++Q++SGLFLDVV+R+ A IFQL   KD+PLLV G+
Sbjct: 295 GLHLQGDGLAGQGLHEDLHPTSEAEDQVQSGLFLDVVVRQGAPIFQLFPGKDQPLLVWGD 354

Query: 579 AFXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLHTTPQTQNQMEGGLFLDVVIRKSAAI 400
           A            GVTGLHLQ DGLAGQGLHEDLH T + ++Q++ GLFLDVV+R+ AAI
Sbjct: 355 ALFVLDLGLDVLDGVTGLHLQSDGLAGQGLHEDLHPTSEAEDQVQSGLFLDVVVRQGAAI 414

Query: 399 LQLLACKDEPLLVGGNAXXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLH 247
            QL   KD+PLLV G+A            GVTGLHLQGDGLAGQGLHEDLH
Sbjct: 415 FQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDLH 465



 Score =  254 bits (649), Expect = 1e-67
 Identities = 134/231 (58%), Positives = 162/231 (70%)
 Frame = -1

Query: 939  ELAATPQTEDQMESGLFLDVVIRKSAAIFQLLACKDEPLLVRGNAFXXXXXXXXXXXGVT 760
            +L  T + EDQ++SGLFLDVV+R+ AAIFQL   KD+PLLV G+A            GVT
Sbjct: 463  DLHPTSEAEDQVQSGLFLDVVVRQGAAIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVT 522

Query: 759  GLHLQGDGLAGQGLHEDLHTTPQTQNQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGN 580
            GLHLQGDGLAGQGLHEDLH T + ++Q++SGLFLDVV+R+ A IFQL   KD+PLLV G+
Sbjct: 523  GLHLQGDGLAGQGLHEDLHPTSEAEDQVQSGLFLDVVVRQGAPIFQLFPGKDQPLLVWGD 582

Query: 579  AFXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLHTTPQTQNQMEGGLFLDVVIRKSAAI 400
            A            GVTGLHLQGDGLAGQGLHEDLH T + ++Q++ GL LDVV+R+ AAI
Sbjct: 583  ALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDLHPTSEAEDQVQSGLLLDVVVRQGAAI 642

Query: 399  LQLLACKDEPLLVGGNAXXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLH 247
             QL   KD+PLLV G+A            GVTGLHLQ DG   +GLH+DLH
Sbjct: 643  FQLFPGKDQPLLVWGDAFFFLYLPLDVLDGVTGLHLQSDGFTSEGLHKDLH 693



 Score =  174 bits (440), Expect = 2e-43
 Identities = 90/159 (56%), Positives = 112/159 (70%)
 Frame = -1

Query: 939  ELAATPQTEDQMESGLFLDVVIRKSAAIFQLLACKDEPLLVRGNAFXXXXXXXXXXXGVT 760
            +L  T + EDQ++SGLFLDVV+R+ A IFQL   KD+PLLV G+A            GVT
Sbjct: 539  DLHPTSEAEDQVQSGLFLDVVVRQGAPIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVT 598

Query: 759  GLHLQGDGLAGQGLHEDLHTTPQTQNQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGN 580
            GLHLQGDGLAGQGLHEDLH T + ++Q++SGL LDVV+R+ AAIFQL   KD+PLLV G+
Sbjct: 599  GLHLQGDGLAGQGLHEDLHPTSEAEDQVQSGLLLDVVVRQGAAIFQLFPGKDQPLLVWGD 658

Query: 579  AFXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLHTTPQ 463
            AF           GVTGLHLQ DG   +GLH+DLH++ +
Sbjct: 659  AFFFLYLPLDVLDGVTGLHLQSDGFTSEGLHKDLHSSSE 697


>ref|XP_002694610.1| PREDICTED: Os05g0242100-like [Bos taurus].
          Length = 481

 Score =  259 bits (662), Expect = 4e-69
 Identities = 137/231 (59%), Positives = 163/231 (70%)
 Frame = -1

Query: 939 ELAATPQTEDQMESGLFLDVVIRKSAAIFQLLACKDEPLLVRGNAFXXXXXXXXXXXGVT 760
           +L  T + EDQ++SGLFLDVV+R+ A IFQL   KD+PLLV G+A            GVT
Sbjct: 232 DLHPTSEAEDQVQSGLFLDVVVRQGAPIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVT 291

Query: 759 GLHLQGDGLAGQGLHEDLHTTPQTQNQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGN 580
           GLHLQGDGLAGQGLHEDLH T + ++Q++SGL LDVV+R+ A IFQL   KD+PLLV G+
Sbjct: 292 GLHLQGDGLAGQGLHEDLHPTSEAEDQVQSGLLLDVVVRQGAPIFQLFPGKDQPLLVWGD 351

Query: 579 AFXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLHTTPQTQNQMEGGLFLDVVIRKSAAI 400
           A            GVTGLHLQGDGLAGQGLHEDLH T + ++Q++ GLFLDVV+R+ A I
Sbjct: 352 ALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDLHPTSEAEDQVQSGLFLDVVVRQGAPI 411

Query: 399 LQLLACKDEPLLVGGNAXXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLH 247
            QL   KD+PLLV G+A            GVTGLHLQGDG AGQGLHEDLH
Sbjct: 412 FQLFPGKDQPLLVWGDALFVLDLALDVLDGVTGLHLQGDGFAGQGLHEDLH 462



 Score =  257 bits (657), Expect = 2e-68
 Identities = 140/244 (57%), Positives = 169/244 (69%)
 Frame = -1

Query: 978 SNAISGHYECKTGELAATPQTEDQMESGLFLDVVIRKSAAIFQLLACKDEPLLVRGNAFX 799
           S+A SG +E     +  + + EDQ++SGLFLDVV+R+ A IFQL   KD+PLLV G+A  
Sbjct: 148 SDAGSGQWE-----VGDSKKAEDQVQSGLFLDVVVRQGAPIFQLFPGKDQPLLVWGDALF 202

Query: 798 XXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLHTTPQTQNQMESGLFLDVVIRKSAAIFQL 619
                     GVTGLHLQ DGLAGQGLHEDLH T + ++Q++SGLFLDVV+R+ A IFQL
Sbjct: 203 VLDLGLDVLDGVTGLHLQSDGLAGQGLHEDLHPTSEAEDQVQSGLFLDVVVRQGAPIFQL 262

Query: 618 LACKDEPLLVGGNAFXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLHTTPQTQNQMEGG 439
              KD+PLLV G+A            GVTGLHLQGDGLAGQGLHEDLH T + ++Q++ G
Sbjct: 263 FPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDLHPTSEAEDQVQSG 322

Query: 438 LFLDVVIRKSAAILQLLACKDEPLLVGGNAXXXXXXXXXXXXGVTGLHLQGDGLAGQGLH 259
           L LDVV+R+ A I QL   KD+PLLV G+A            GVTGLHLQGDGLAGQGLH
Sbjct: 323 LLLDVVVRQGAPIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGDGLAGQGLH 382

Query: 258 EDLH 247
           EDLH
Sbjct: 383 EDLH 386



 Score =  179 bits (454), Expect = 6e-45
 Identities = 94/159 (59%), Positives = 112/159 (70%)
 Frame = -1

Query: 939 ELAATPQTEDQMESGLFLDVVIRKSAAIFQLLACKDEPLLVRGNAFXXXXXXXXXXXGVT 760
           +L  T + EDQ++SGL LDVV+R+ A IFQL   KD+PLLV G+A            GVT
Sbjct: 308 DLHPTSEAEDQVQSGLLLDVVVRQGAPIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVT 367

Query: 759 GLHLQGDGLAGQGLHEDLHTTPQTQNQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGN 580
           GLHLQGDGLAGQGLHEDLH T + ++Q++SGLFLDVV+R+ A IFQL   KD+PLLV G+
Sbjct: 368 GLHLQGDGLAGQGLHEDLHPTSEAEDQVQSGLFLDVVVRQGAPIFQLFPGKDQPLLVWGD 427

Query: 579 AFXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLHTTPQ 463
           A            GVTGLHLQGDG AGQGLHEDLH T +
Sbjct: 428 ALFVLDLALDVLDGVTGLHLQGDGFAGQGLHEDLHPTSE 466


>ref|XP_001251963.2| PREDICTED: ubiquitin B-like, partial [Bos taurus].
          Length = 88

 Score =  160 bits (405), Expect = 3e-39
 Identities = 81/86 (94%), Positives = 83/86 (96%)
 Frame = +1

Query: 217 QRLCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 396
           + L +HSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI AGKQL
Sbjct: 2   RHLRIHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLILAGKQL 61

Query: 397 EDGRTLSDYNIQKESTLHLVLRLRGG 474
           EDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 62  EDGRTLSDYNIQKESTLHLVLRLRGG 87



 Score =  154 bits (389), Expect = 2e-37
 Identities = 78/86 (90%), Positives = 80/86 (93%)
 Frame = +1

Query: 676 HLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 855
           HL +  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI AGKQLE
Sbjct: 3   HLRIHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLILAGKQLE 62

Query: 856 DGRTLSDYNIQKESTLHLVLRLRGGC 933
           DGRTLSDYNIQKESTLHLVLRLRGGC
Sbjct: 63  DGRTLSDYNIQKESTLHLVLRLRGGC 88



 Score =  150 bits (380), Expect = 2e-36
 Identities = 77/85 (90%), Positives = 79/85 (92%)
 Frame = +1

Query: 448 HLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 627
           HL +  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI AGKQLE
Sbjct: 3   HLRIHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLILAGKQLE 62

Query: 628 DGRTLSDYNIQKESTLHLVLRLRGG 702
           DGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 63  DGRTLSDYNIQKESTLHLVLRLRGG 87


>ref|XP_002694527.1| PREDICTED: ubiquitin B-like [Bos taurus].
          Length = 77

 Score =  152 bits (384), Expect = 7e-37
 Identities = 76/77 (98%), Positives = 76/77 (98%)
 Frame = +1

Query: 703 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 882
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI AGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLILAGKQLEDGRTLSDYN 60

Query: 883 IQKESTLHLVLRLRGGC 933
           IQKESTLHLVLRLRGGC
Sbjct: 61  IQKESTLHLVLRLRGGC 77



 Score =  149 bits (375), Expect = 8e-36
 Identities = 75/76 (98%), Positives = 75/76 (98%)
 Frame = +1

Query: 247 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 426
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI AGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLILAGKQLEDGRTLSDYN 60

Query: 427 IQKESTLHLVLRLRGG 474
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  149 bits (375), Expect = 8e-36
 Identities = 75/76 (98%), Positives = 75/76 (98%)
 Frame = +1

Query: 475 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 654
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI AGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLILAGKQLEDGRTLSDYN 60

Query: 655 IQKESTLHLVLRLRGG 702
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76


>ref|NP_001069831.1| ubiquitin-60S ribosomal protein L40 [Bos taurus].
          Length = 128

 Score =  151 bits (382), Expect = 1e-36
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +1

Query: 247 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 426
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 427 IQKESTLHLVLRLRGGM 477
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (382), Expect = 1e-36
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +1

Query: 475 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 654
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 655 IQKESTLHLVLRLRGGM 705
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (381), Expect = 2e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 703 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 882
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 883 IQKESTLHLVLRLRGG 930
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76


>ref|NP_777203.1| ubiquitin-40S ribosomal protein S27a [Bos taurus].
          Length = 156

 Score =  151 bits (381), Expect = 2e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 247 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 426
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 427 IQKESTLHLVLRLRGG 474
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 2e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 475 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 654
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 655 IQKESTLHLVLRLRGG 702
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 2e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 703 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 882
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 883 IQKESTLHLVLRLRGG 930
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 49,192,611
Number of extensions: 1559462
Number of successful extensions: 4041
Number of sequences better than 1.0e-05: 34
Number of HSP's gapped: 3988
Number of HSP's successfully gapped: 105
Length of query: 487
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 381
Effective length of database: 14,174,046
Effective search space: 5400311526
Effective search space used: 5400311526
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001552
         (1461 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_536651.2| PREDICTED: similar to ubiquitin B precursor iso...   446   e-125
Alignment   gi|XP_853060.1| PREDICTED: similar to CG11624-PA, isoform A [Ca...   445   e-125
Alignment   gi|XP_863683.1| PREDICTED: similar to ubiquitin B precursor iso...   301   1e-81
Alignment   gi|XP_863640.1| PREDICTED: similar to ubiquitin B precursor iso...   284   2e-76
Alignment   gi|XP_851119.1| PREDICTED: similar to polyubiquitin [Canis fami...   164   3e-40
Alignment   gi|XP_531829.2| PREDICTED: similar to ubiquitin and ribosomal p...   155   1e-37
Alignment   gi|XP_852564.1| PREDICTED: similar to ubiquitin B precursor [Ca...   152   6e-37
Alignment   gi|NP_001121567.1| ubiquitin-60S ribosomal protein L40 precurso...   151   1e-36
Alignment   gi|NP_001030325.1| hypothetical protein LOC612529 [Canis lupus ...   151   1e-36
Alignment   gi|XP_538142.1| PREDICTED: similar to ubiquitin and ribosomal p...   146   4e-35

>ref|XP_536651.2| PREDICTED: similar to ubiquitin B precursor isoform 1 [Canis
           familiaris].
          Length = 229

 Score =  446 bits (1146), Expect = e-125
 Identities = 228/229 (99%), Positives = 228/229 (99%)
 Frame = +1

Query: 247 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 426
           M IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MPIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 427 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 606
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 607 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 786
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 787 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 933
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 229



 Score =  298 bits (763), Expect = 9e-81
 Identities = 154/160 (96%), Positives = 155/160 (96%)
 Frame = +1

Query: 223 LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 402
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 69  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128

Query: 403 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 582
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 129 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 188

Query: 583 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 702
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 189 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228


>ref|XP_853060.1| PREDICTED: similar to CG11624-PA, isoform A [Canis familiaris].
          Length = 381

 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +1

Query: 223 LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 402
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 69  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128

Query: 403 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 582
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 129 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 188

Query: 583 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 762
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 189 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 248

Query: 763 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 930
           DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 249 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304



 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +1

Query: 223 LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 402
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 145 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 204

Query: 403 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 582
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 205 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 264

Query: 583 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 762
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 265 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 324

Query: 763 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 930
           DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 325 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 380



 Score =  444 bits (1143), Expect = e-125
 Identities = 228/228 (100%), Positives = 228/228 (100%)
 Frame = +1

Query: 247 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 426
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 427 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 606
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 607 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 786
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 787 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 930
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228



 Score =  298 bits (764), Expect = 7e-81
 Identities = 154/161 (95%), Positives = 156/161 (96%)
 Frame = +1

Query: 223 LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 402
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 221 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 280

Query: 403 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 582
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 281 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 340

Query: 583 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 705
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+
Sbjct: 341 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGV 381


>ref|XP_863683.1| PREDICTED: similar to ubiquitin B precursor isoform 3 [Canis
           familiaris].
          Length = 153

 Score =  301 bits (771), Expect = 1e-81
 Identities = 153/153 (100%), Positives = 153/153 (100%)
 Frame = +1

Query: 475 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 654
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 655 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 834
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 835 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 933
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 153



 Score =  298 bits (762), Expect = 1e-80
 Identities = 152/152 (100%), Positives = 152/152 (100%)
 Frame = +1

Query: 247 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 426
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 427 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 606
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 607 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 702
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152



 Score =  151 bits (382), Expect = 1e-36
 Identities = 78/84 (92%), Positives = 79/84 (94%)
 Frame = +1

Query: 223 LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 402
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 69  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128

Query: 403 GRTLSDYNIQKESTLHLVLRLRGG 474
           GRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 129 GRTLSDYNIQKESTLHLVLRLRGG 152


>ref|XP_863640.1| PREDICTED: similar to ubiquitin B precursor isoform 2 [Canis
           familiaris].
          Length = 181

 Score =  284 bits (726), Expect = 2e-76
 Identities = 152/181 (83%), Positives = 152/181 (83%), Gaps = 28/181 (15%)
 Frame = +1

Query: 475 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 654
           M IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MPIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 655 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLE---------------------------- 750
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLE                            
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLESTLHLVLRLRGGMQIFVKTLTGKTITLE 120

Query: 751 VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 930
           VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 121 VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 180

Query: 931 C 933
           C
Sbjct: 181 C 181



 Score =  280 bits (717), Expect = 2e-75
 Identities = 151/180 (83%), Positives = 151/180 (83%), Gaps = 28/180 (15%)
 Frame = +1

Query: 247 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 426
           M IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MPIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 427 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLE---------------------------- 522
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLE                            
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLESTLHLVLRLRGGMQIFVKTLTGKTITLE 120

Query: 523 VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 702
           VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 121 VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 180



 Score =  151 bits (382), Expect = 1e-36
 Identities = 78/84 (92%), Positives = 79/84 (94%)
 Frame = +1

Query: 223 LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 402
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 97  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 156

Query: 403 GRTLSDYNIQKESTLHLVLRLRGG 474
           GRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 157 GRTLSDYNIQKESTLHLVLRLRGG 180


>ref|XP_851119.1| PREDICTED: similar to polyubiquitin [Canis familiaris].
          Length = 111

 Score =  164 bits (414), Expect = 3e-40
 Identities = 84/91 (92%), Positives = 87/91 (95%)
 Frame = +1

Query: 430 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 609
           +K +TLHLVL LRGGMQIFVKTLTGKTITLEVEP+DTIENVKAKIQDKEGIPPDQQRLIF
Sbjct: 11  KKCTTLHLVLCLRGGMQIFVKTLTGKTITLEVEPNDTIENVKAKIQDKEGIPPDQQRLIF 70

Query: 610 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 702
           A KQLEDG TLSDYNIQKESTLHLVLRLRGG
Sbjct: 71  ASKQLEDGCTLSDYNIQKESTLHLVLRLRGG 101



 Score =  164 bits (414), Expect = 3e-40
 Identities = 84/91 (92%), Positives = 87/91 (95%)
 Frame = +1

Query: 658 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 837
           +K +TLHLVL LRGGMQIFVKTLTGKTITLEVEP+DTIENVKAKIQDKEGIPPDQQRLIF
Sbjct: 11  KKCTTLHLVLCLRGGMQIFVKTLTGKTITLEVEPNDTIENVKAKIQDKEGIPPDQQRLIF 70

Query: 838 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 930
           A KQLEDG TLSDYNIQKESTLHLVLRLRGG
Sbjct: 71  ASKQLEDGCTLSDYNIQKESTLHLVLRLRGG 101



 Score =  145 bits (366), Expect = 1e-34
 Identities = 76/84 (90%), Positives = 77/84 (91%)
 Frame = +1

Query: 223 LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 402
           LCL     MQIFVKTLTGKTITLEVEP+DTIENVKAKIQDKEGIPPDQQRLIFA KQLED
Sbjct: 20  LCLRGG--MQIFVKTLTGKTITLEVEPNDTIENVKAKIQDKEGIPPDQQRLIFASKQLED 77

Query: 403 GRTLSDYNIQKESTLHLVLRLRGG 474
           G TLSDYNIQKESTLHLVLRLRGG
Sbjct: 78  GCTLSDYNIQKESTLHLVLRLRGG 101


>ref|XP_531829.2| PREDICTED: similar to ubiquitin and ribosomal protein S27a
           precursor [Canis familiaris].
          Length = 228

 Score =  155 bits (391), Expect = 1e-37
 Identities = 78/84 (92%), Positives = 80/84 (95%)
 Frame = +1

Query: 223 LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 402
           +C  +  KMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 65  ICGGTAAKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 124

Query: 403 GRTLSDYNIQKESTLHLVLRLRGG 474
           GRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 125 GRTLSDYNIQKESTLHLVLRLRGG 148



 Score =  151 bits (381), Expect = 2e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 475 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 654
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 73  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 132

Query: 655 IQKESTLHLVLRLRGG 702
           IQKESTLHLVLRLRGG
Sbjct: 133 IQKESTLHLVLRLRGG 148



 Score =  151 bits (381), Expect = 2e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 703 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 882
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 73  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 132

Query: 883 IQKESTLHLVLRLRGG 930
           IQKESTLHLVLRLRGG
Sbjct: 133 IQKESTLHLVLRLRGG 148


>ref|XP_852564.1| PREDICTED: similar to ubiquitin B precursor [Canis familiaris].
          Length = 87

 Score =  152 bits (385), Expect = 6e-37
 Identities = 76/79 (96%), Positives = 78/79 (98%)
 Frame = +1

Query: 238 QVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 417
           QVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS
Sbjct: 8   QVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 67

Query: 418 DYNIQKESTLHLVLRLRGG 474
           DYNIQK+STLHL+L LRGG
Sbjct: 68  DYNIQKKSTLHLILHLRGG 86



 Score =  150 bits (380), Expect = 2e-36
 Identities = 74/77 (96%), Positives = 76/77 (98%)
 Frame = +1

Query: 703 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 882
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 11  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 70

Query: 883 IQKESTLHLVLRLRGGC 933
           IQK+STLHL+L LRGGC
Sbjct: 71  IQKKSTLHLILHLRGGC 87



 Score =  147 bits (371), Expect = 3e-35
 Identities = 73/76 (96%), Positives = 75/76 (98%)
 Frame = +1

Query: 475 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 654
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 11  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 70

Query: 655 IQKESTLHLVLRLRGG 702
           IQK+STLHL+L LRGG
Sbjct: 71  IQKKSTLHLILHLRGG 86


>ref|NP_001121567.1| ubiquitin-60S ribosomal protein L40 precursor [Canis lupus
           familiaris].
          Length = 128

 Score =  151 bits (382), Expect = 1e-36
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +1

Query: 247 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 426
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 427 IQKESTLHLVLRLRGGM 477
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (382), Expect = 1e-36
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +1

Query: 475 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 654
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 655 IQKESTLHLVLRLRGGM 705
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (381), Expect = 2e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 703 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 882
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 883 IQKESTLHLVLRLRGG 930
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76


>ref|NP_001030325.1| hypothetical protein LOC612529 [Canis lupus familiaris].
          Length = 128

 Score =  151 bits (382), Expect = 1e-36
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +1

Query: 247 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 426
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 427 IQKESTLHLVLRLRGGM 477
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (382), Expect = 1e-36
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +1

Query: 475 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 654
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 655 IQKESTLHLVLRLRGGM 705
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (381), Expect = 2e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 703 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 882
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 883 IQKESTLHLVLRLRGG 930
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76


>ref|XP_538142.1| PREDICTED: similar to ubiquitin and ribosomal protein S27a
           precursor [Canis familiaris].
          Length = 161

 Score =  146 bits (369), Expect = 4e-35
 Identities = 74/80 (92%), Positives = 76/80 (95%)
 Frame = +1

Query: 235 SQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 414
           ++ KMQIFVKTLTGKTITLEVEPSDTIEN KAKI DKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 2   AEAKMQIFVKTLTGKTITLEVEPSDTIENEKAKILDKEGIPPDQQRLIFAGKQLEDGRTL 61

Query: 415 SDYNIQKESTLHLVLRLRGG 474
           SDYNIQKEST HLVLRLRGG
Sbjct: 62  SDYNIQKESTPHLVLRLRGG 81



 Score =  143 bits (361), Expect = 4e-34
 Identities = 73/76 (96%), Positives = 73/76 (96%)
 Frame = +1

Query: 475 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 654
           MQIFVKTLTGKTITLEVEPSDTIEN KAKI DKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 6   MQIFVKTLTGKTITLEVEPSDTIENEKAKILDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 65

Query: 655 IQKESTLHLVLRLRGG 702
           IQKEST HLVLRLRGG
Sbjct: 66  IQKESTPHLVLRLRGG 81



 Score =  143 bits (361), Expect = 4e-34
 Identities = 73/76 (96%), Positives = 73/76 (96%)
 Frame = +1

Query: 703 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 882
           MQIFVKTLTGKTITLEVEPSDTIEN KAKI DKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 6   MQIFVKTLTGKTITLEVEPSDTIENEKAKILDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 65

Query: 883 IQKESTLHLVLRLRGG 930
           IQKEST HLVLRLRGG
Sbjct: 66  IQKESTPHLVLRLRGG 81


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,235,047
Number of extensions: 1363979
Number of successful extensions: 4025
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 3978
Number of HSP's successfully gapped: 80
Length of query: 487
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 380
Effective length of database: 15,307,552
Effective search space: 5816869760
Effective search space used: 5816869760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001552
         (1461 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_061828.1| polyubiquitin-B precursor [Homo sapiens].            448   e-126
Alignment   gi|NP_066289.2| polyubiquitin-C [Homo sapiens].                      445   e-125
Alignment   gi|NP_003324.1| ubiquitin-60S ribosomal protein L40 precursor [...   151   1e-36
Alignment   gi|NP_001029102.1| ubiquitin-60S ribosomal protein L40 precurso...   151   1e-36
Alignment   gi|NP_001170884.1| ubiquitin-40S ribosomal protein S27a precurs...   151   2e-36
Alignment   gi|NP_002945.1| ubiquitin-40S ribosomal protein S27a precursor ...   151   2e-36
Alignment   gi|NP_001129064.1| ubiquitin-40S ribosomal protein S27a precurs...   151   2e-36
Alignment   gi|NP_006147.1| NEDD8 precursor [Homo sapiens].                       96   6e-20
Alignment   gi|NP_006389.2| ubiquitin D [Homo sapiens].                           85   2e-16
Alignment   gi|NP_005092.1| ubiquitin-like protein ISG15 precursor [Homo sa...    77   4e-14

>ref|NP_061828.1| polyubiquitin-B precursor [Homo sapiens].
          Length = 229

 Score =  448 bits (1152), Expect = e-126
 Identities = 229/229 (100%), Positives = 229/229 (100%)
 Frame = +1

Query: 247 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 426
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 427 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 606
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 607 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 786
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 787 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 933
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 229



 Score =  298 bits (763), Expect = 9e-81
 Identities = 154/160 (96%), Positives = 155/160 (96%)
 Frame = +1

Query: 223 LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 402
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 69  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128

Query: 403 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 582
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 129 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 188

Query: 583 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 702
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 189 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228


>ref|NP_066289.2| polyubiquitin-C [Homo sapiens].
          Length = 685

 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +1

Query: 223 LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 402
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 221 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 280

Query: 403 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 582
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 281 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 340

Query: 583 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 762
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 341 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 400

Query: 763 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 930
           DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 401 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 456



 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +1

Query: 223  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 402
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 297  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 356

Query: 403  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 582
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 357  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 416

Query: 583  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 762
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 417  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 476

Query: 763  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 930
            DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 477  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 532



 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +1

Query: 223  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 402
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 373  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 432

Query: 403  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 582
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 433  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 492

Query: 583  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 762
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 493  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 552

Query: 763  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 930
            DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 553  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 608



 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +1

Query: 223  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 402
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 449  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 508

Query: 403  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 582
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 509  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 568

Query: 583  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 762
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 569  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 628

Query: 763  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 930
            DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 629  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 684



 Score =  442 bits (1136), Expect = e-124
 Identities = 229/236 (97%), Positives = 230/236 (97%)
 Frame = +1

Query: 223 LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 402
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 69  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128

Query: 403 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 582
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 129 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 188

Query: 583 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 762
           P DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 189 PSDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 248

Query: 763 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 930
           DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 249 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304



 Score =  442 bits (1136), Expect = e-124
 Identities = 229/236 (97%), Positives = 230/236 (97%)
 Frame = +1

Query: 223 LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 402
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP DQQRLIFAGKQLED
Sbjct: 145 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPSDQQRLIFAGKQLED 204

Query: 403 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 582
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 205 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 264

Query: 583 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 762
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 265 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 324

Query: 763 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 930
           DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 325 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 380



 Score =  441 bits (1135), Expect = e-124
 Identities = 227/228 (99%), Positives = 227/228 (99%)
 Frame = +1

Query: 247 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 426
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 427 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 606
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 607 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 786
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 787 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 930
           KIQDKEGIP DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 181 KIQDKEGIPSDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228



 Score =  298 bits (764), Expect = 7e-81
 Identities = 154/161 (95%), Positives = 156/161 (96%)
 Frame = +1

Query: 223  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 402
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 525  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 584

Query: 403  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 582
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 585  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 644

Query: 583  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 705
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+
Sbjct: 645  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGV 685


>ref|NP_003324.1| ubiquitin-60S ribosomal protein L40 precursor [Homo sapiens].
          Length = 128

 Score =  151 bits (382), Expect = 1e-36
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +1

Query: 247 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 426
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 427 IQKESTLHLVLRLRGGM 477
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (382), Expect = 1e-36
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +1

Query: 475 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 654
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 655 IQKESTLHLVLRLRGGM 705
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (381), Expect = 2e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 703 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 882
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 883 IQKESTLHLVLRLRGG 930
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76


>ref|NP_001029102.1| ubiquitin-60S ribosomal protein L40 precursor [Homo sapiens].
          Length = 128

 Score =  151 bits (382), Expect = 1e-36
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +1

Query: 247 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 426
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 427 IQKESTLHLVLRLRGGM 477
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (382), Expect = 1e-36
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +1

Query: 475 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 654
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 655 IQKESTLHLVLRLRGGM 705
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (381), Expect = 2e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 703 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 882
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 883 IQKESTLHLVLRLRGG 930
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76


>ref|NP_001170884.1| ubiquitin-40S ribosomal protein S27a precursor [Homo sapiens].
          Length = 156

 Score =  151 bits (381), Expect = 2e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 247 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 426
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 427 IQKESTLHLVLRLRGG 474
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 2e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 475 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 654
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 655 IQKESTLHLVLRLRGG 702
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 2e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 703 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 882
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 883 IQKESTLHLVLRLRGG 930
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76


>ref|NP_002945.1| ubiquitin-40S ribosomal protein S27a precursor [Homo sapiens].
          Length = 156

 Score =  151 bits (381), Expect = 2e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 247 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 426
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 427 IQKESTLHLVLRLRGG 474
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 2e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 475 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 654
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 655 IQKESTLHLVLRLRGG 702
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 2e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 703 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 882
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 883 IQKESTLHLVLRLRGG 930
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76


>ref|NP_001129064.1| ubiquitin-40S ribosomal protein S27a precursor [Homo sapiens].
          Length = 156

 Score =  151 bits (381), Expect = 2e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 247 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 426
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 427 IQKESTLHLVLRLRGG 474
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 2e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 475 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 654
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 655 IQKESTLHLVLRLRGG 702
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 2e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 703 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 882
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 883 IQKESTLHLVLRLRGG 930
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76


>ref|NP_006147.1| NEDD8 precursor [Homo sapiens].
          Length = 81

 Score = 96.3 bits (238), Expect = 6e-20
 Identities = 44/76 (57%), Positives = 59/76 (77%)
 Frame = +1

Query: 247 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 426
           M I VKTLTGK I +++EP+D +E +K ++++KEGIPP QQRLI++GKQ+ D +T +DY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 427 IQKESTLHLVLRLRGG 474
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76



 Score = 96.3 bits (238), Expect = 6e-20
 Identities = 44/76 (57%), Positives = 59/76 (77%)
 Frame = +1

Query: 475 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 654
           M I VKTLTGK I +++EP+D +E +K ++++KEGIPP QQRLI++GKQ+ D +T +DY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 655 IQKESTLHLVLRLRGG 702
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76



 Score = 96.3 bits (238), Expect = 6e-20
 Identities = 44/76 (57%), Positives = 59/76 (77%)
 Frame = +1

Query: 703 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 882
           M I VKTLTGK I +++EP+D +E +K ++++KEGIPP QQRLI++GKQ+ D +T +DY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 883 IQKESTLHLVLRLRGG 930
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76


>ref|NP_006389.2| ubiquitin D [Homo sapiens].
          Length = 165

 Score = 84.7 bits (208), Expect = 2e-16
 Identities = 53/166 (31%), Positives = 86/166 (51%), Gaps = 6/166 (3%)
 Frame = +1

Query: 223 LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 402
           LC+H        V++     +T +  P D+++ +K  ++ K  +P   Q L+   K L+ 
Sbjct: 8   LCVH--------VRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKP 59

Query: 403 GRTLSDYNIQKESTLHLVLRL----RGGMQIFVKTL--TGKTITLEVEPSDTIENVKAKI 564
            R+LS Y I KE T+HL L++       + +F+       K   L+V  S ++  VKA I
Sbjct: 60  RRSLSSYGIDKEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMI 119

Query: 565 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 702
           + K GI P+ Q +   GK+LEDG+ ++DY I+K + L L     GG
Sbjct: 120 ETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG 165



 Score = 84.3 bits (207), Expect = 3e-16
 Identities = 50/156 (32%), Positives = 83/156 (53%), Gaps = 6/156 (3%)
 Frame = +1

Query: 481 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 660
           + V++     +T +  P D+++ +K  ++ K  +P   Q L+   K L+  R+LS Y I 
Sbjct: 10  VHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGID 69

Query: 661 KESTLHLVLRL----RGGMQIFVKTL--TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 822
           KE T+HL L++       + +F+       K   L+V  S ++  VKA I+ K GI P+ 
Sbjct: 70  KEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIETKTGIIPET 129

Query: 823 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 930
           Q +   GK+LEDG+ ++DY I+K + L L     GG
Sbjct: 130 QIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG 165


>ref|NP_005092.1| ubiquitin-like protein ISG15 precursor [Homo sapiens].
          Length = 165

 Score = 77.0 bits (188), Expect = 4e-14
 Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 3/156 (1%)
 Frame = +1

Query: 472 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLS 645
           G  + VK L G    + +  S ++  +KA+I  K G+   QQRL    +G  L+D   L+
Sbjct: 2   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61

Query: 646 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 822
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 62  SQGLGPGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121

Query: 823 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 930
             L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157



 Score = 75.1 bits (183), Expect = 2e-13
 Identities = 50/151 (33%), Positives = 80/151 (52%), Gaps = 3/151 (1%)
 Frame = +1

Query: 259 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLSDYNIQ 432
           VK L G    + +  S ++  +KA+I  K G+   QQRL    +G  L+D   L+   + 
Sbjct: 7   VKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLG 66

Query: 433 KESTLHLVL-RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 609
             ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F
Sbjct: 67  PGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF 126

Query: 610 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 702
            GK LED   L +Y ++  ST+ + LRLRGG
Sbjct: 127 EGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157



 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 37/102 (36%), Positives = 53/102 (51%), Gaps = 9/102 (8%)
 Frame = +1

Query: 196 DSV*LASQRLCLHSQV---------KMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE 348
           D V LASQ L   S V          + I V+   G++ T EV  + T+ ++K ++   E
Sbjct: 56  DRVPLASQGLGPGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLE 115

Query: 349 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 474
           G+  D   L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct: 116 GVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,011,344
Number of extensions: 1314566
Number of successful extensions: 4019
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 3988
Number of HSP's successfully gapped: 70
Length of query: 487
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 380
Effective length of database: 14,770,016
Effective search space: 5612606080
Effective search space used: 5612606080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001552
         (1461 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_062613.3| polyubiquitin-C [Mus musculus].                      445   e-125
Alignment   gi|NP_035794.1| polyubiquitin-B [Mus musculus].                      445   e-125
Alignment   gi|XP_985698.2| PREDICTED: ubiquitin-like protein ISG15-like [M...   151   1e-36
Alignment   gi|XP_003086791.1| PREDICTED: ubiquitin-like protein ISG15-like...   151   1e-36
Alignment   gi|NP_063936.1| ubiquitin-60S ribosomal protein L40 [Mus muscul...   151   1e-36
Alignment   gi|NP_001029037.1| ubiquitin-40S ribosomal protein S27a precurs...   151   1e-36
Alignment   gi|NP_077239.1| ubiquitin-40S ribosomal protein S27a precursor ...   151   1e-36
Alignment   gi|XP_003086579.1| PREDICTED: hypothetical protein LOC667035 [M...   149   5e-36
Alignment   gi|XP_001002242.1| PREDICTED: hypothetical protein LOC667035 [M...   148   9e-36
Alignment   gi|XP_126432.6| PREDICTED: hypothetical protein LOC216818 [Mus ...   108   1e-23

>ref|NP_062613.3| polyubiquitin-C [Mus musculus].
          Length = 734

 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +1

Query: 223 LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 402
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 69  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128

Query: 403 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 582
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 129 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 188

Query: 583 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 762
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 189 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 248

Query: 763 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 930
           DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 249 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304



 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +1

Query: 223 LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 402
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 145 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 204

Query: 403 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 582
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 205 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 264

Query: 583 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 762
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 265 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 324

Query: 763 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 930
           DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 325 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 380



 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +1

Query: 223 LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 402
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 221 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 280

Query: 403 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 582
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 281 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 340

Query: 583 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 762
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 341 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 400

Query: 763 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 930
           DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 401 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 456



 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +1

Query: 223  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 402
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 297  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 356

Query: 403  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 582
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 357  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 416

Query: 583  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 762
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 417  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 476

Query: 763  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 930
            DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 477  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 532



 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +1

Query: 223  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 402
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 373  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 432

Query: 403  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 582
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 433  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 492

Query: 583  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 762
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 493  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 552

Query: 763  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 930
            DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 553  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 608



 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +1

Query: 223  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 402
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 449  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 508

Query: 403  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 582
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 509  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 568

Query: 583  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 762
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 569  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 628

Query: 763  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 930
            DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 629  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 684



 Score =  444 bits (1143), Expect = e-125
 Identities = 228/228 (100%), Positives = 228/228 (100%)
 Frame = +1

Query: 247 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 426
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 427 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 606
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 607 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 786
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 787 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 930
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228



 Score =  338 bits (868), Expect = 5e-93
 Identities = 176/187 (94%), Positives = 179/187 (95%)
 Frame = +1

Query: 223  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 402
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 525  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 584

Query: 403  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 582
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 585  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 644

Query: 583  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 762
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL+VEPS
Sbjct: 645  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPS 704

Query: 763  DTIENVK 783
             T + VK
Sbjct: 705  VTTKKVK 711


>ref|NP_035794.1| polyubiquitin-B [Mus musculus].
          Length = 305

 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +1

Query: 223 LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 402
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 69  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128

Query: 403 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 582
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 129 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 188

Query: 583 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 762
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 189 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 248

Query: 763 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 930
           DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 249 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304



 Score =  444 bits (1143), Expect = e-125
 Identities = 228/228 (100%), Positives = 228/228 (100%)
 Frame = +1

Query: 247 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 426
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 427 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 606
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 607 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 786
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 787 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 930
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228


>ref|XP_985698.2| PREDICTED: ubiquitin-like protein ISG15-like [Mus musculus].
          Length = 203

 Score =  151 bits (382), Expect = 1e-36
 Identities = 79/96 (82%), Positives = 85/96 (88%)
 Frame = +1

Query: 190 RGDSV*LASQRLCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ 369
           R D + L+ QR    +   +QIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQ
Sbjct: 59  RKDRLSLSLQRGGRAADANVQIFVKTLTGKTITLEVEPSDTIKNVKAKIQDKEGIPPDQQ 118

Query: 370 RLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 477
           RLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+
Sbjct: 119 RLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 154



 Score =  150 bits (380), Expect = 2e-36
 Identities = 81/106 (76%), Positives = 90/106 (84%), Gaps = 6/106 (5%)
 Frame = +1

Query: 406 RTLSDYNIQKESTLHLVLRLRGG------MQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 567
           R +    ++++  L L L+ RGG      +QIFVKTLTGKTITLEVEPSDTI+NVKAKIQ
Sbjct: 50  RCVQQPKVKRKDRLSLSLQ-RGGRAADANVQIFVKTLTGKTITLEVEPSDTIKNVKAKIQ 108

Query: 568 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 705
           DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+
Sbjct: 109 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 154



 Score =  150 bits (379), Expect = 2e-36
 Identities = 81/105 (77%), Positives = 89/105 (84%), Gaps = 6/105 (5%)
 Frame = +1

Query: 634 RTLSDYNIQKESTLHLVLRLRGG------MQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 795
           R +    ++++  L L L+ RGG      +QIFVKTLTGKTITLEVEPSDTI+NVKAKIQ
Sbjct: 50  RCVQQPKVKRKDRLSLSLQ-RGGRAADANVQIFVKTLTGKTITLEVEPSDTIKNVKAKIQ 108

Query: 796 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 930
           DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 109 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 153


>ref|XP_003086791.1| PREDICTED: ubiquitin-like protein ISG15-like [Mus musculus].
          Length = 203

 Score =  151 bits (382), Expect = 1e-36
 Identities = 79/96 (82%), Positives = 85/96 (88%)
 Frame = +1

Query: 190 RGDSV*LASQRLCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ 369
           R D + L+ QR    +   +QIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQ
Sbjct: 59  RKDRLSLSLQRGGRAADANVQIFVKTLTGKTITLEVEPSDTIKNVKAKIQDKEGIPPDQQ 118

Query: 370 RLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 477
           RLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+
Sbjct: 119 RLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 154



 Score =  150 bits (380), Expect = 2e-36
 Identities = 81/106 (76%), Positives = 90/106 (84%), Gaps = 6/106 (5%)
 Frame = +1

Query: 406 RTLSDYNIQKESTLHLVLRLRGG------MQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 567
           R +    ++++  L L L+ RGG      +QIFVKTLTGKTITLEVEPSDTI+NVKAKIQ
Sbjct: 50  RCVQQPKVKRKDRLSLSLQ-RGGRAADANVQIFVKTLTGKTITLEVEPSDTIKNVKAKIQ 108

Query: 568 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 705
           DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+
Sbjct: 109 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 154



 Score =  150 bits (379), Expect = 2e-36
 Identities = 81/105 (77%), Positives = 89/105 (84%), Gaps = 6/105 (5%)
 Frame = +1

Query: 634 RTLSDYNIQKESTLHLVLRLRGG------MQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 795
           R +    ++++  L L L+ RGG      +QIFVKTLTGKTITLEVEPSDTI+NVKAKIQ
Sbjct: 50  RCVQQPKVKRKDRLSLSLQ-RGGRAADANVQIFVKTLTGKTITLEVEPSDTIKNVKAKIQ 108

Query: 796 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 930
           DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 109 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 153


>ref|NP_063936.1| ubiquitin-60S ribosomal protein L40 [Mus musculus].
          Length = 128

 Score =  151 bits (382), Expect = 1e-36
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +1

Query: 247 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 426
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 427 IQKESTLHLVLRLRGGM 477
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (382), Expect = 1e-36
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +1

Query: 475 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 654
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 655 IQKESTLHLVLRLRGGM 705
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 703 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 882
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 883 IQKESTLHLVLRLRGG 930
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76


>ref|NP_001029037.1| ubiquitin-40S ribosomal protein S27a precursor [Mus musculus].
          Length = 156

 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 247 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 426
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 427 IQKESTLHLVLRLRGG 474
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 475 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 654
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 655 IQKESTLHLVLRLRGG 702
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 703 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 882
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 883 IQKESTLHLVLRLRGG 930
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76


>ref|NP_077239.1| ubiquitin-40S ribosomal protein S27a precursor [Mus musculus].
          Length = 156

 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 247 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 426
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 427 IQKESTLHLVLRLRGG 474
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 475 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 654
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 655 IQKESTLHLVLRLRGG 702
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 703 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 882
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 883 IQKESTLHLVLRLRGG 930
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76


>ref|XP_003086579.1| PREDICTED: hypothetical protein LOC667035 [Mus musculus].
          Length = 155

 Score =  149 bits (376), Expect = 5e-36
 Identities = 77/85 (90%), Positives = 79/85 (92%)
 Frame = +1

Query: 247 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 426
           MQIFVKTLTGKTITLEVEPSDTI NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIGNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 427 IQKESTLHLVLRLRGGMQIFVKTLT 501
           IQKESTLHLVLRLRGG +   K+ T
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKSYT 85



 Score =  149 bits (376), Expect = 5e-36
 Identities = 77/85 (90%), Positives = 79/85 (92%)
 Frame = +1

Query: 475 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 654
           MQIFVKTLTGKTITLEVEPSDTI NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIGNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 655 IQKESTLHLVLRLRGGMQIFVKTLT 729
           IQKESTLHLVLRLRGG +   K+ T
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKSYT 85



 Score =  148 bits (374), Expect = 9e-36
 Identities = 75/76 (98%), Positives = 75/76 (98%)
 Frame = +1

Query: 703 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 882
           MQIFVKTLTGKTITLEVEPSDTI NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIGNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 883 IQKESTLHLVLRLRGG 930
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76


>ref|XP_001002242.1| PREDICTED: hypothetical protein LOC667035 [Mus musculus].
          Length = 156

 Score =  148 bits (374), Expect = 9e-36
 Identities = 75/76 (98%), Positives = 75/76 (98%)
 Frame = +1

Query: 247 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 426
           MQIFVKTLTGKTITLEVEPSDTI NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIGNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 427 IQKESTLHLVLRLRGG 474
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  148 bits (374), Expect = 9e-36
 Identities = 75/76 (98%), Positives = 75/76 (98%)
 Frame = +1

Query: 475 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 654
           MQIFVKTLTGKTITLEVEPSDTI NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIGNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 655 IQKESTLHLVLRLRGG 702
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  148 bits (374), Expect = 9e-36
 Identities = 75/76 (98%), Positives = 75/76 (98%)
 Frame = +1

Query: 703 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 882
           MQIFVKTLTGKTITLEVEPSDTI NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIGNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 883 IQKESTLHLVLRLRGG 930
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76


>ref|XP_126432.6| PREDICTED: hypothetical protein LOC216818 [Mus musculus].
          Length = 239

 Score =  108 bits (270), Expect = 1e-23
 Identities = 56/81 (69%), Positives = 65/81 (80%)
 Frame = +1

Query: 235 SQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 414
           +   +QIF+KTLT  TITLEV+PSDTIENVK KIQD EGIPPDQQRL+F GKQLEDG TL
Sbjct: 110 ADTNVQIFLKTLTDNTITLEVKPSDTIENVKDKIQDSEGIPPDQQRLVFNGKQLEDGCTL 169

Query: 415 SDYNIQKESTLHLVLRLRGGM 477
           S+  IQ +STL+L L L  G+
Sbjct: 170 SNCYIQNQSTLYLELPLCDGI 190



 Score =  108 bits (269), Expect = 1e-23
 Identities = 56/77 (72%), Positives = 64/77 (83%)
 Frame = +1

Query: 475 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 654
           +QIF+KTLT  TITLEV+PSDTIENVK KIQD EGIPPDQQRL+F GKQLEDG TLS+  
Sbjct: 114 VQIFLKTLTDNTITLEVKPSDTIENVKDKIQDSEGIPPDQQRLVFNGKQLEDGCTLSNCY 173

Query: 655 IQKESTLHLVLRLRGGM 705
           IQ +STL+L L L  G+
Sbjct: 174 IQNQSTLYLELPLCDGI 190



 Score =  107 bits (268), Expect = 2e-23
 Identities = 56/76 (73%), Positives = 63/76 (82%)
 Frame = +1

Query: 703 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 882
           +QIF+KTLT  TITLEV+PSDTIENVK KIQD EGIPPDQQRL+F GKQLEDG TLS+  
Sbjct: 114 VQIFLKTLTDNTITLEVKPSDTIENVKDKIQDSEGIPPDQQRLVFNGKQLEDGCTLSNCY 173

Query: 883 IQKESTLHLVLRLRGG 930
           IQ +STL+L L L  G
Sbjct: 174 IQNQSTLYLELPLCDG 189


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,297,663
Number of extensions: 1113783
Number of successful extensions: 3417
Number of sequences better than 1.0e-05: 32
Number of HSP's gapped: 3378
Number of HSP's successfully gapped: 97
Length of query: 487
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 382
Effective length of database: 12,463,779
Effective search space: 4761163578
Effective search space used: 4761163578
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001552
         (1461 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001098779.1| ubiquitin [Sus scrofa].                           448   e-126
Alignment   gi|XP_003359130.1| PREDICTED: polyubiquitin-B-like isoform 5 [S...   445   e-125
Alignment   gi|XP_003359129.1| PREDICTED: polyubiquitin-B-like isoform 4 [S...   445   e-125
Alignment   gi|XP_003359128.1| PREDICTED: polyubiquitin-B-like isoform 3 [S...   445   e-125
Alignment   gi|XP_003359127.1| PREDICTED: polyubiquitin-B-like isoform 2 [S...   445   e-125
Alignment   gi|XP_003132918.2| PREDICTED: polyubiquitin-B-like isoform 1 [S...   445   e-125
Alignment   gi|XP_003358349.1| PREDICTED: hypothetical protein LOC100627098...   416   e-116
Alignment   gi|NP_999376.1| ubiquitin-60S ribosomal protein L40 [Sus scrofa].    151   8e-37
Alignment   gi|XP_003125185.1| PREDICTED: ubiquitin-40S ribosomal protein S...   151   1e-36
Alignment   gi|XP_003125184.1| PREDICTED: ubiquitin-40S ribosomal protein S...   151   1e-36

>ref|NP_001098779.1| ubiquitin [Sus scrofa].
          Length = 229

 Score =  448 bits (1152), Expect = e-126
 Identities = 229/229 (100%), Positives = 229/229 (100%)
 Frame = +1

Query: 247 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 426
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 427 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 606
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 607 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 786
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 787 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 933
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 229



 Score =  298 bits (763), Expect = 5e-81
 Identities = 154/160 (96%), Positives = 155/160 (96%)
 Frame = +1

Query: 223 LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 402
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 69  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128

Query: 403 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 582
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 129 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 188

Query: 583 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 702
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 189 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228


>ref|XP_003359130.1| PREDICTED: polyubiquitin-B-like isoform 5 [Sus scrofa].
          Length = 305

 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +1

Query: 223 LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 402
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 69  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128

Query: 403 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 582
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 129 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 188

Query: 583 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 762
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 189 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 248

Query: 763 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 930
           DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 249 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304



 Score =  441 bits (1135), Expect = e-124
 Identities = 226/228 (99%), Positives = 227/228 (99%)
 Frame = +1

Query: 247 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 426
           MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 427 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 606
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 607 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 786
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 787 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 930
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228


>ref|XP_003359129.1| PREDICTED: polyubiquitin-B-like isoform 4 [Sus scrofa].
          Length = 305

 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +1

Query: 223 LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 402
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 69  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128

Query: 403 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 582
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 129 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 188

Query: 583 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 762
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 189 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 248

Query: 763 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 930
           DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 249 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304



 Score =  441 bits (1135), Expect = e-124
 Identities = 226/228 (99%), Positives = 227/228 (99%)
 Frame = +1

Query: 247 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 426
           MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 427 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 606
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 607 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 786
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 787 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 930
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228


>ref|XP_003359128.1| PREDICTED: polyubiquitin-B-like isoform 3 [Sus scrofa].
          Length = 305

 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +1

Query: 223 LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 402
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 69  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128

Query: 403 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 582
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 129 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 188

Query: 583 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 762
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 189 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 248

Query: 763 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 930
           DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 249 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304



 Score =  441 bits (1135), Expect = e-124
 Identities = 226/228 (99%), Positives = 227/228 (99%)
 Frame = +1

Query: 247 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 426
           MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 427 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 606
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 607 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 786
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 787 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 930
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228


>ref|XP_003359127.1| PREDICTED: polyubiquitin-B-like isoform 2 [Sus scrofa].
          Length = 305

 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +1

Query: 223 LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 402
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 69  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128

Query: 403 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 582
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 129 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 188

Query: 583 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 762
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 189 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 248

Query: 763 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 930
           DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 249 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304



 Score =  441 bits (1135), Expect = e-124
 Identities = 226/228 (99%), Positives = 227/228 (99%)
 Frame = +1

Query: 247 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 426
           MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 427 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 606
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 607 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 786
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 787 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 930
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228


>ref|XP_003132918.2| PREDICTED: polyubiquitin-B-like isoform 1 [Sus scrofa].
          Length = 305

 Score =  445 bits (1144), Expect = e-125
 Identities = 230/236 (97%), Positives = 231/236 (97%)
 Frame = +1

Query: 223 LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 402
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 69  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128

Query: 403 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 582
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 129 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 188

Query: 583 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 762
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS
Sbjct: 189 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 248

Query: 763 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 930
           DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 249 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304



 Score =  441 bits (1135), Expect = e-124
 Identities = 226/228 (99%), Positives = 227/228 (99%)
 Frame = +1

Query: 247 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 426
           MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 427 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 606
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 607 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 786
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 787 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 930
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228


>ref|XP_003358349.1| PREDICTED: hypothetical protein LOC100627098 [Sus scrofa].
          Length = 252

 Score =  416 bits (1070), Expect = e-116
 Identities = 218/252 (86%), Positives = 218/252 (86%)
 Frame = -1

Query: 993 MARVQSNAISGHYECKTGELAATPQTEDQMESGLFLDVVIRKSAAIFQLLACKDEPLLVR 814
           MARVQSNAISGHYECKTGELAATPQTEDQMESGLFLDVVIRKSAAIFQLLACKDEPLLVR
Sbjct: 1   MARVQSNAISGHYECKTGELAATPQTEDQMESGLFLDVVIRKSAAIFQLLACKDEPLLVR 60

Query: 813 GNAFXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLHTTPQTQNQMESGLFLDVVIRKSA 634
           GNAF           GVTGLHLQGDGLAGQGLHEDLHTTPQTQNQMESGLFLDVVIRKSA
Sbjct: 61  GNAFLILDLGLHILDGVTGLHLQGDGLAGQGLHEDLHTTPQTQNQMESGLFLDVVIRKSA 120

Query: 633 AIFQLLACKDEPLLVGGNAFXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLHTTPQTQN 454
           AIFQLLACKDEPLLVGGNAF           GVTGLHLQGDGLAGQGLHEDLHTTPQTQN
Sbjct: 121 AIFQLLACKDEPLLVGGNAFLILDLGLHILDGVTGLHLQGDGLAGQGLHEDLHTTPQTQN 180

Query: 453 QMEGGLFLDVVIRKSAAILQLLACKDEPLLVGGNAXXXXXXXXXXXXGVTGLHLQGDGLA 274
           QMEGGLFLDVVIRKSAAILQLLACKDEPLLVGGNA            GVTGLHLQGDGLA
Sbjct: 181 QMEGGLFLDVVIRKSAAILQLLACKDEPLLVGGNALLILDLGLHILDGVTGLHLQGDGLA 240

Query: 273 GQGLHEDLHFDL 238
           GQGLHEDLHFDL
Sbjct: 241 GQGLHEDLHFDL 252


>ref|NP_999376.1| ubiquitin-60S ribosomal protein L40 [Sus scrofa].
          Length = 128

 Score =  151 bits (382), Expect = 8e-37
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +1

Query: 247 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 426
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 427 IQKESTLHLVLRLRGGM 477
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (382), Expect = 8e-37
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +1

Query: 475 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 654
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 655 IQKESTLHLVLRLRGGM 705
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 703 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 882
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 883 IQKESTLHLVLRLRGG 930
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76


>ref|XP_003125185.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Sus scrofa].
          Length = 156

 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 247 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 426
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 427 IQKESTLHLVLRLRGG 474
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 475 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 654
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 655 IQKESTLHLVLRLRGG 702
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 703 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 882
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 883 IQKESTLHLVLRLRGG 930
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76


>ref|XP_003125184.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Sus scrofa].
          Length = 156

 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 247 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 426
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 427 IQKESTLHLVLRLRGG 474
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 475 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 654
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 655 IQKESTLHLVLRLRGG 702
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 703 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 882
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 883 IQKESTLHLVLRLRGG 930
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,018,763
Number of extensions: 1372586
Number of successful extensions: 2672
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 2613
Number of HSP's successfully gapped: 66
Length of query: 487
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 384
Effective length of database: 8,779,541
Effective search space: 3371343744
Effective search space used: 3371343744
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001552
         (1461 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr12                                                        1663   0.0  
Sscrofa_Chr14                                                         720   0.0  
Sscrofa_Chr10                                                         519   e-144
Sscrofa_Chr08                                                         228   7e-57
Sscrofa_Chr15                                                         198   6e-48
Sscrofa_Chr02                                                         127   2e-26
Sscrofa_Chr01                                                         107   2e-20
gb|GL894030.1| Sus scrofa unplaced genomic scaffold chrU_scaffol...    84   2e-13
Sscrofa_Chr03                                                          66   6e-08

>Sscrofa_Chr12 
||          Length = 63588571

 Score = 1663 bits (839), Expect = 0.0
 Identities = 839/839 (100%)
 Strand = Plus / Minus

                                                                            
Query: 239      aggtcaaaatgcagatcttcgtgaagaccctgaccggcaagaccatcaccctggaggtgg 298
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62298822 aggtcaaaatgcagatcttcgtgaagaccctgaccggcaagaccatcaccctggaggtgg 62298763

                                                                            
Query: 299      agcccagtgacaccatcgagaatgtgaaggccaagatccaggataaggagggcattcccc 358
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62298762 agcccagtgacaccatcgagaatgtgaaggccaagatccaggataaggagggcattcccc 62298703

                                                                            
Query: 359      ccgaccagcagaggctcatctttgcaggcaagcagctggaggatggccgcactctttctg 418
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62298702 ccgaccagcagaggctcatctttgcaggcaagcagctggaggatggccgcactctttctg 62298643

                                                                            
Query: 419      attacaacatccagaaagagtccaccctccatctggttctgcgtctgaggggtggtatgc 478
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62298642 attacaacatccagaaagagtccaccctccatctggttctgcgtctgaggggtggtatgc 62298583

                                                                            
Query: 479      agatcttcgtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagtgaca 538
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62298582 agatcttcgtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagtgaca 62298523

                                                                            
Query: 539      ccatcgagaatgtgaaggccaagatccaggataaggaaggcattccccccgaccagcaga 598
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62298522 ccatcgagaatgtgaaggccaagatccaggataaggaaggcattccccccgaccagcaga 62298463

                                                                            
Query: 599      ggctcatctttgcaggcaagcagctggaagatggccgcactctttctgattacaacatcc 658
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62298462 ggctcatctttgcaggcaagcagctggaagatggccgcactctttctgattacaacatcc 62298403

                                                                            
Query: 659      agaaagagtccactctccatctggttctgcgtctgaggggtggtatgcagatcttcgtga 718
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62298402 agaaagagtccactctccatctggttctgcgtctgaggggtggtatgcagatcttcgtga 62298343

                                                                            
Query: 719      agaccttgaccggcaagaccatcaccctggaggtggagcccagtgacaccatcgagaatg 778
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62298342 agaccttgaccggcaagaccatcaccctggaggtggagcccagtgacaccatcgagaatg 62298283

                                                                            
Query: 779      tgaaggccaagatccaggataaggaaggcattccccctgaccagcagaggctcatctttg 838
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62298282 tgaaggccaagatccaggataaggaaggcattccccctgaccagcagaggctcatctttg 62298223

                                                                            
Query: 839      caggcaagcagctggaagatggccgcactctttctgattacaacatccagaaagagtcca 898
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62298222 caggcaagcagctggaagatggccgcactctttctgattacaacatccagaaagagtcca 62298163

                                                                            
Query: 899      ctctccatctggtcctccgtctgaggggtggctgctaattctccagtcttgcattcataa 958
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62298162 ctctccatctggtcctccgtctgaggggtggctgctaattctccagtcttgcattcataa 62298103

                                                                            
Query: 959      tgcccactgatggcattactctgcactctagccatttgccccaatttaagtttagaaatt 1018
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62298102 tgcccactgatggcattactctgcactctagccatttgccccaatttaagtttagaaatt 62298043

                                                                           
Query: 1019     accagtttcagtaatagctgaacctgtccaaaatgttaataaaggttttgttgcatggt 1077
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62298042 accagtttcagtaatagctgaacctgtccaaaatgttaataaaggttttgttgcatggt 62297984



 Score =  472 bits (238), Expect = e-130
 Identities = 241/242 (99%)
 Strand = Plus / Minus

                                                                            
Query: 1        ttcagggctccgctgaggggcctcgctgcgtcgcggaggtgaggccgagggaactacttt 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62299721 ttcagggctccgctgaggggcctcgctgcgtcgcggaggtgaggccgagggaactacttt 62299662

                                                                            
Query: 61       cagcagcgcacggatacggcgcctacgcaagcgtgatgagtgacgcaacagacgttgcat 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62299661 cagcagcgcacggatacggcgcctacgcaagcgtgatgagtgacgcaacagacgttgcat 62299602

                                                                            
Query: 121      aaatttcggccccgccgagccgcagggttcagaagcgactggcattgttggcggtttcgc 180
                ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 62299601 aaatttcggccccgccgagccgcagcgttcagaagcgactggcattgttggcggtttcgc 62299542

                                                                            
Query: 181      tgttgcggtcgaggtgattcggtgtgattggcttcacagcgtctgtgccttcactcacag 240
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62299541 tgttgcggtcgaggtgattcggtgtgattggcttcacagcgtctgtgccttcactcacag 62299482

                  
Query: 241      gt 242
                ||
Sbjct: 62299481 gt 62299480


>Sscrofa_Chr14 
||          Length = 153851969

 Score =  720 bits (363), Expect = 0.0
 Identities = 594/671 (88%)
 Strand = Plus / Plus

                                                                            
Query: 247      atgcagatcttcgtgaagaccctgaccggcaagaccatcaccctggaggtggagcccagt 306
                ||||||||||||||||||||| |||| || ||||||||||||||||| ||||||||||| 
Sbjct: 29960091 atgcagatcttcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccagc 29960150

                                                                            
Query: 307      gacaccatcgagaatgtgaaggccaagatccaggataaggagggcattccccccgaccag 366
                |||||||||||||| || ||||| ||||||||||| ||||| ||||| ||||| ||||||
Sbjct: 29960151 gacaccatcgagaacgtcaaggcgaagatccaggacaaggaaggcatccccccagaccag 29960210

                                                                            
Query: 367      cagaggctcatctttgcaggcaagcagctggaggatggccgcactctttctgattacaac 426
                |||||||| |||||||| || ||||||||||| ||||| ||||| || ||||| ||||||
Sbjct: 29960211 cagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaac 29960270

                                                                            
Query: 427      atccagaaagagtccaccctccatctggttctgcgtctgaggggtggtatgcagatcttc 486
                |||||||| ||||||||||| || ||||| || || || || ||||| ||||||||||||
Sbjct: 29960271 atccagaaggagtccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttc 29960330

                                                                            
Query: 487      gtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagtgacaccatcgag 546
                |||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 29960331 gtgaagaccttgactggtaagaccatcaccctggaagtggagcccagcgacaccatcgag 29960390

                                                                            
Query: 547      aatgtgaaggccaagatccaggataaggaaggcattccccccgaccagcagaggctcatc 606
                || || ||||| ||||||||||| ||||||||||| ||||| |||||||||||||| |||
Sbjct: 29960391 aacgtcaaggcgaagatccaggacaaggaaggcatccccccagaccagcagaggctgatc 29960450

                                                                            
Query: 607      tttgcaggcaagcagctggaagatggccgcactctttctgattacaacatccagaaagag 666
                ||||| || ||||||||||||||||| ||||| || ||||| |||||||||||||| |||
Sbjct: 29960451 tttgccgggaagcagctggaagatgggcgcaccctgtctgactacaacatccagaaggag 29960510

                                                                            
Query: 667      tccactctccatctggttctgcgtctgaggggtggtatgcagatcttcgtgaagaccttg 726
                ||||| || || ||||| || || || || ||||| ||||||||||||||||||||||||
Sbjct: 29960511 tccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttcgtgaagaccttg 29960570

                                                                            
Query: 727      accggcaagaccatcaccctggaggtggagcccagtgacaccatcgagaatgtgaaggcc 786
                || || ||||||||||||||||| ||||||||||| |||||||||||||| || ||||| 
Sbjct: 29960571 actggtaagaccatcaccctggaagtggagcccagcgacaccatcgagaacgtcaaggcg 29960630

                                                                            
Query: 787      aagatccaggataaggaaggcattccccctgaccagcagaggctcatctttgcaggcaag 846
                ||||||||||| ||||||||||| ||||| |||||||||||||| |||||||| || |||
Sbjct: 29960631 aagatccaggacaaggaaggcatccccccagaccagcagaggctgatctttgccgggaag 29960690

                                                                            
Query: 847      cagctggaagatggccgcactctttctgattacaacatccagaaagagtccactctccat 906
                |||||||||||||| ||||| || ||||| |||||||||||||| |||||||| || || 
Sbjct: 29960691 cagctggaagatgggcgcaccctgtctgactacaacatccagaaggagtccaccctgcac 29960750

                           
Query: 907      ctggtcctccg 917
                |||||||||||
Sbjct: 29960751 ctggtcctccg 29960761



 Score =  712 bits (359), Expect = 0.0
 Identities = 593/671 (88%)
 Strand = Plus / Plus

                                                                            
Query: 247      atgcagatcttcgtgaagaccctgaccggcaagaccatcaccctggaggtggagcccagt 306
                ||||||||||||||||||||| |||| || ||||||||||||||||| ||||||||||| 
Sbjct: 29960319 atgcagatcttcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccagc 29960378

                                                                            
Query: 307      gacaccatcgagaatgtgaaggccaagatccaggataaggagggcattccccccgaccag 366
                |||||||||||||| || ||||| ||||||||||| ||||| ||||| ||||| ||||||
Sbjct: 29960379 gacaccatcgagaacgtcaaggcgaagatccaggacaaggaaggcatccccccagaccag 29960438

                                                                            
Query: 367      cagaggctcatctttgcaggcaagcagctggaggatggccgcactctttctgattacaac 426
                |||||||| |||||||| || ||||||||||| ||||| ||||| || ||||| ||||||
Sbjct: 29960439 cagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaac 29960498

                                                                            
Query: 427      atccagaaagagtccaccctccatctggttctgcgtctgaggggtggtatgcagatcttc 486
                |||||||| ||||||||||| || ||||| || || || || ||||| ||||||||||||
Sbjct: 29960499 atccagaaggagtccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttc 29960558

                                                                            
Query: 487      gtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagtgacaccatcgag 546
                |||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 29960559 gtgaagaccttgactggtaagaccatcaccctggaagtggagcccagcgacaccatcgag 29960618

                                                                            
Query: 547      aatgtgaaggccaagatccaggataaggaaggcattccccccgaccagcagaggctcatc 606
                || || ||||| ||||||||||| ||||||||||| ||||| |||||||||||||| |||
Sbjct: 29960619 aacgtcaaggcgaagatccaggacaaggaaggcatccccccagaccagcagaggctgatc 29960678

                                                                            
Query: 607      tttgcaggcaagcagctggaagatggccgcactctttctgattacaacatccagaaagag 666
                ||||| || ||||||||||||||||| ||||| || ||||| |||||||||||||| |||
Sbjct: 29960679 tttgccgggaagcagctggaagatgggcgcaccctgtctgactacaacatccagaaggag 29960738

                                                                            
Query: 667      tccactctccatctggttctgcgtctgaggggtggtatgcagatcttcgtgaagaccttg 726
                ||||| || || ||||| || || || || ||||| ||||||||||||||||||||||||
Sbjct: 29960739 tccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttcgtgaagaccttg 29960798

                                                                            
Query: 727      accggcaagaccatcaccctggaggtggagcccagtgacaccatcgagaatgtgaaggcc 786
                || || ||||||||||||||||| ||||||||||| |||||||||||||| || ||||| 
Sbjct: 29960799 actggtaagaccatcaccctggaagtggagcccagcgacaccatcgagaacgtcaaggcg 29960858

                                                                            
Query: 787      aagatccaggataaggaaggcattccccctgaccagcagaggctcatctttgcaggcaag 846
                |||||||| || ||||||||||| ||||| |||||||||||||| |||||||| || |||
Sbjct: 29960859 aagatccaagacaaggaaggcatccccccagaccagcagaggctgatctttgccgggaag 29960918

                                                                            
Query: 847      cagctggaagatggccgcactctttctgattacaacatccagaaagagtccactctccat 906
                |||||||||||||| ||||| || ||||| |||||||||||||| |||||||| || || 
Sbjct: 29960919 cagctggaagatgggcgcaccctgtctgactacaacatccagaaggagtccaccctgcac 29960978

                           
Query: 907      ctggtcctccg 917
                |||||||||||
Sbjct: 29960979 ctggtcctccg 29960989



 Score =  712 bits (359), Expect = 0.0
 Identities = 593/671 (88%)
 Strand = Plus / Plus

                                                                            
Query: 247      atgcagatcttcgtgaagaccctgaccggcaagaccatcaccctggaggtggagcccagt 306
                ||||||||||||||||||||| |||| || ||||||||||||||||| ||||||||||| 
Sbjct: 29960547 atgcagatcttcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccagc 29960606

                                                                            
Query: 307      gacaccatcgagaatgtgaaggccaagatccaggataaggagggcattccccccgaccag 366
                |||||||||||||| || ||||| ||||||||||| ||||| ||||| ||||| ||||||
Sbjct: 29960607 gacaccatcgagaacgtcaaggcgaagatccaggacaaggaaggcatccccccagaccag 29960666

                                                                            
Query: 367      cagaggctcatctttgcaggcaagcagctggaggatggccgcactctttctgattacaac 426
                |||||||| |||||||| || ||||||||||| ||||| ||||| || ||||| ||||||
Sbjct: 29960667 cagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaac 29960726

                                                                            
Query: 427      atccagaaagagtccaccctccatctggttctgcgtctgaggggtggtatgcagatcttc 486
                |||||||| ||||||||||| || ||||| || || || || ||||| ||||||||||||
Sbjct: 29960727 atccagaaggagtccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttc 29960786

                                                                            
Query: 487      gtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagtgacaccatcgag 546
                |||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 29960787 gtgaagaccttgactggtaagaccatcaccctggaagtggagcccagcgacaccatcgag 29960846

                                                                            
Query: 547      aatgtgaaggccaagatccaggataaggaaggcattccccccgaccagcagaggctcatc 606
                || || ||||| |||||||| || ||||||||||| ||||| |||||||||||||| |||
Sbjct: 29960847 aacgtcaaggcgaagatccaagacaaggaaggcatccccccagaccagcagaggctgatc 29960906

                                                                            
Query: 607      tttgcaggcaagcagctggaagatggccgcactctttctgattacaacatccagaaagag 666
                ||||| || ||||||||||||||||| ||||| || ||||| |||||||||||||| |||
Sbjct: 29960907 tttgccgggaagcagctggaagatgggcgcaccctgtctgactacaacatccagaaggag 29960966

                                                                            
Query: 667      tccactctccatctggttctgcgtctgaggggtggtatgcagatcttcgtgaagaccttg 726
                ||||| || || ||||| || || || || ||||| ||||||||||||||||||||||||
Sbjct: 29960967 tccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttcgtgaagaccttg 29961026

                                                                            
Query: 727      accggcaagaccatcaccctggaggtggagcccagtgacaccatcgagaatgtgaaggcc 786
                || || ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| 
Sbjct: 29961027 actggtaagaccatcaccctggaagtggagcccagcgacaccatcgagaatgtcaaggcg 29961086

                                                                            
Query: 787      aagatccaggataaggaaggcattccccctgaccagcagaggctcatctttgcaggcaag 846
                |||||||| || ||||||||||| ||||| |||||||||||||| |||||||| || |||
Sbjct: 29961087 aagatccaagacaaggaaggcatccccccagaccagcagaggctgatctttgccgggaag 29961146

                                                                            
Query: 847      cagctggaagatggccgcactctttctgattacaacatccagaaagagtccactctccat 906
                |||||||||||||| ||||| || ||||| |||||||||||||| |||||||| || || 
Sbjct: 29961147 cagctggaagatgggcgcaccctgtctgactacaacatccagaaggagtccaccctgcac 29961206

                           
Query: 907      ctggtcctccg 917
                |||||||||||
Sbjct: 29961207 ctggtcctccg 29961217



 Score =  700 bits (353), Expect = 0.0
 Identities = 578/653 (88%)
 Strand = Plus / Plus

                                                                            
Query: 247      atgcagatcttcgtgaagaccctgaccggcaagaccatcaccctggaggtggagcccagt 306
                ||||||||||||||||||||| |||| || ||||||||||||||||| ||||||||||| 
Sbjct: 29960775 atgcagatcttcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccagc 29960834

                                                                            
Query: 307      gacaccatcgagaatgtgaaggccaagatccaggataaggagggcattccccccgaccag 366
                |||||||||||||| || ||||| |||||||| || ||||| ||||| ||||| ||||||
Sbjct: 29960835 gacaccatcgagaacgtcaaggcgaagatccaagacaaggaaggcatccccccagaccag 29960894

                                                                            
Query: 367      cagaggctcatctttgcaggcaagcagctggaggatggccgcactctttctgattacaac 426
                |||||||| |||||||| || ||||||||||| ||||| ||||| || ||||| ||||||
Sbjct: 29960895 cagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaac 29960954

                                                                            
Query: 427      atccagaaagagtccaccctccatctggttctgcgtctgaggggtggtatgcagatcttc 486
                |||||||| ||||||||||| || ||||| || || || || ||||| ||||||||||||
Sbjct: 29960955 atccagaaggagtccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttc 29961014

                                                                            
Query: 487      gtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagtgacaccatcgag 546
                |||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 29961015 gtgaagaccttgactggtaagaccatcaccctggaagtggagcccagcgacaccatcgag 29961074

                                                                            
Query: 547      aatgtgaaggccaagatccaggataaggaaggcattccccccgaccagcagaggctcatc 606
                ||||| ||||| |||||||| || ||||||||||| ||||| |||||||||||||| |||
Sbjct: 29961075 aatgtcaaggcgaagatccaagacaaggaaggcatccccccagaccagcagaggctgatc 29961134

                                                                            
Query: 607      tttgcaggcaagcagctggaagatggccgcactctttctgattacaacatccagaaagag 666
                ||||| || ||||||||||||||||| ||||| || ||||| |||||||||||||| |||
Sbjct: 29961135 tttgccgggaagcagctggaagatgggcgcaccctgtctgactacaacatccagaaggag 29961194

                                                                            
Query: 667      tccactctccatctggttctgcgtctgaggggtggtatgcagatcttcgtgaagaccttg 726
                ||||| || || ||||| || || || || ||||| ||||||||||||||||||||||||
Sbjct: 29961195 tccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttcgtgaagaccttg 29961254

                                                                            
Query: 727      accggcaagaccatcaccctggaggtggagcccagtgacaccatcgagaatgtgaaggcc 786
                || || ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| 
Sbjct: 29961255 actggtaagaccatcaccctggaagtggagcccagcgacaccatcgagaatgtcaaggcg 29961314

                                                                            
Query: 787      aagatccaggataaggaaggcattccccctgaccagcagaggctcatctttgcaggcaag 846
                |||||||| || ||||||||||| ||||| |||||||||||||| |||||||| || |||
Sbjct: 29961315 aagatccaagacaaggaaggcatccccccagaccagcagaggctgatctttgccgggaag 29961374

                                                                     
Query: 847      cagctggaagatggccgcactctttctgattacaacatccagaaagagtccac 899
                |||||||||||||| ||||| || ||||| |||||||||||||| ||||||||
Sbjct: 29961375 cagctggaagatgggcgcaccctgtctgactacaacatccagaaggagtccac 29961427



 Score =  690 bits (348), Expect = 0.0
 Identities = 591/672 (87%)
 Strand = Plus / Plus

                                                                            
Query: 246      aatgcagatcttcgtgaagaccctgaccggcaagaccatcaccctggaggtggagcccag 305
                |||||||||||| || |||||| |||| || ||||||||||||||||| |||||||||||
Sbjct: 29959862 aatgcagatctttgtaaagaccttgactggtaagaccatcaccctggaagtggagcccag 29959921

                                                                            
Query: 306      tgacaccatcgagaatgtgaaggccaagatccaggataaggagggcattccccccgacca 365
                ||||||||| |||||||| ||||  ||||| || || || |||||||| ||||| |||||
Sbjct: 29959922 tgacaccattgagaatgtcaaggggaagattcaagaaaaagagggcatccccccagacca 29959981

                                                                            
Query: 366      gcagaggctcatctttgcaggcaagcagctggaggatggccgcactctttctgattacaa 425
                ||||||||| |||||||| || ||||||||||| ||||| ||||| || ||||| |||||
Sbjct: 29959982 gcagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaa 29960041

                                                                            
Query: 426      catccagaaagagtccaccctccatctggttctgcgtctgaggggtggtatgcagatctt 485
                ||||||||| ||||||||||| || ||||| || || || || ||||| |||||||||||
Sbjct: 29960042 catccagaaggagtccaccctgcacctggtcctccgcctcagaggtgggatgcagatctt 29960101

                                                                            
Query: 486      cgtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagtgacaccatcga 545
                ||||||||||||||| || ||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 29960102 cgtgaagaccttgactggtaagaccatcaccctggaagtggagcccagcgacaccatcga 29960161

                                                                            
Query: 546      gaatgtgaaggccaagatccaggataaggaaggcattccccccgaccagcagaggctcat 605
                ||| || ||||| ||||||||||| ||||||||||| ||||| |||||||||||||| ||
Sbjct: 29960162 gaacgtcaaggcgaagatccaggacaaggaaggcatccccccagaccagcagaggctgat 29960221

                                                                            
Query: 606      ctttgcaggcaagcagctggaagatggccgcactctttctgattacaacatccagaaaga 665
                |||||| || ||||||||||||||||| ||||| || ||||| |||||||||||||| ||
Sbjct: 29960222 ctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaacatccagaagga 29960281

                                                                            
Query: 666      gtccactctccatctggttctgcgtctgaggggtggtatgcagatcttcgtgaagacctt 725
                |||||| || || ||||| || || || || ||||| |||||||||||||||||||||||
Sbjct: 29960282 gtccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttcgtgaagacctt 29960341

                                                                            
Query: 726      gaccggcaagaccatcaccctggaggtggagcccagtgacaccatcgagaatgtgaaggc 785
                ||| || ||||||||||||||||| ||||||||||| |||||||||||||| || |||||
Sbjct: 29960342 gactggtaagaccatcaccctggaagtggagcccagcgacaccatcgagaacgtcaaggc 29960401

                                                                            
Query: 786      caagatccaggataaggaaggcattccccctgaccagcagaggctcatctttgcaggcaa 845
                 ||||||||||| ||||||||||| ||||| |||||||||||||| |||||||| || ||
Sbjct: 29960402 gaagatccaggacaaggaaggcatccccccagaccagcagaggctgatctttgccgggaa 29960461

                                                                            
Query: 846      gcagctggaagatggccgcactctttctgattacaacatccagaaagagtccactctcca 905
                ||||||||||||||| ||||| || ||||| |||||||||||||| |||||||| || ||
Sbjct: 29960462 gcagctggaagatgggcgcaccctgtctgactacaacatccagaaggagtccaccctgca 29960521

                            
Query: 906      tctggtcctccg 917
                 |||||||||||
Sbjct: 29960522 cctggtcctccg 29960533



 Score =  230 bits (116), Expect = 2e-57
 Identities = 179/200 (89%)
 Strand = Plus / Plus

                                                                            
Query: 247      atgcagatcttcgtgaagaccctgaccggcaagaccatcaccctggaggtggagcccagt 306
                ||||||||||||||||||||| |||| || ||||||||||||||||| ||||||||||| 
Sbjct: 29961231 atgcagatcttcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccagc 29961290

                                                                            
Query: 307      gacaccatcgagaatgtgaaggccaagatccaggataaggagggcattccccccgaccag 366
                ||||||||||||||||| ||||| |||||||| || ||||| ||||| ||||| ||||||
Sbjct: 29961291 gacaccatcgagaatgtcaaggcgaagatccaagacaaggaaggcatccccccagaccag 29961350

                                                                            
Query: 367      cagaggctcatctttgcaggcaagcagctggaggatggccgcactctttctgattacaac 426
                |||||||| |||||||| || ||||||||||| ||||| ||||| || ||||| ||||||
Sbjct: 29961351 cagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaac 29961410

                                    
Query: 427      atccagaaagagtccaccct 446
                |||||||| |||||||||||
Sbjct: 29961411 atccagaaggagtccaccct 29961430



 Score = 95.6 bits (48), Expect = 7e-17
 Identities = 163/200 (81%), Gaps = 1/200 (0%)
 Strand = Plus / Minus

                                                                            
Query: 247      atgcagatcttcgtgaagaccctgaccggcaagaccatcaccctggaggtggagcccagt 306
                ||||||||||| ||||||||||| || ||||||||||||||| | |||||  ||||||| 
Sbjct: 42239731 atgcagatctttgtgaagaccctaacaggcaagaccatcacctttgaggtcaagcccagc 42239672

                                                                            
Query: 307      gacaccatcgagaatgtgaaggccaagatccaggataaggagggcattccccccgaccag 366
                 | ||||  |||||||| || || || |||||||| ||||||||||| |  || ||||||
Sbjct: 42239671 aatacca-agagaatgtcaaagctaaaatccaggacaaggagggcatcctgcctgaccag 42239613

                                                                            
Query: 367      cagaggctcatctttgcaggcaagcagctggaggatggccgcactctttctgattacaac 426
                ||| | || || ||||   |||| ||||||||||||||||  || || || || ||| | 
Sbjct: 42239612 cagtgtctgatttttgtcagcaaacagctggaggatggccatacactctcagactacgat 42239553

                                    
Query: 427      atccagaaagagtccaccct 446
                ||||||||||||||||||||
Sbjct: 42239552 atccagaaagagtccaccct 42239533



 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 158/197 (80%), Gaps = 1/197 (0%)
 Strand = Plus / Minus

                                                                            
Query: 703      atgcagatcttcgtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagt 762
                ||||||||||| ||||||||| | || ||||||||||||||| | |||||  ||||||| 
Sbjct: 42239731 atgcagatctttgtgaagaccctaacaggcaagaccatcacctttgaggtcaagcccagc 42239672

                                                                            
Query: 763      gacaccatcgagaatgtgaaggccaagatccaggataaggaaggcattccccctgaccag 822
                 | ||||  |||||||| || || || |||||||| ||||| ||||| |  |||||||||
Sbjct: 42239671 aatacca-agagaatgtcaaagctaaaatccaggacaaggagggcatcctgcctgaccag 42239613

                                                                            
Query: 823      cagaggctcatctttgcaggcaagcagctggaagatggccgcactctttctgattacaac 882
                ||| | || || ||||   |||| |||||||| |||||||  || || || || ||| | 
Sbjct: 42239612 cagtgtctgatttttgtcagcaaacagctggaggatggccatacactctcagactacgat 42239553

                                 
Query: 883      atccagaaagagtccac 899
                |||||||||||||||||
Sbjct: 42239552 atccagaaagagtccac 42239536



 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 157/197 (79%), Gaps = 1/197 (0%)
 Strand = Plus / Minus

                                                                            
Query: 475      atgcagatcttcgtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagt 534
                ||||||||||| ||||||||| | || ||||||||||||||| | |||||  ||||||| 
Sbjct: 42239731 atgcagatctttgtgaagaccctaacaggcaagaccatcacctttgaggtcaagcccagc 42239672

                                                                            
Query: 535      gacaccatcgagaatgtgaaggccaagatccaggataaggaaggcattccccccgaccag 594
                 | ||||  |||||||| || || || |||||||| ||||| ||||| |  || ||||||
Sbjct: 42239671 aatacca-agagaatgtcaaagctaaaatccaggacaaggagggcatcctgcctgaccag 42239613

                                                                            
Query: 595      cagaggctcatctttgcaggcaagcagctggaagatggccgcactctttctgattacaac 654
                ||| | || || ||||   |||| |||||||| |||||||  || || || || ||| | 
Sbjct: 42239612 cagtgtctgatttttgtcagcaaacagctggaggatggccatacactctcagactacgat 42239553

                                 
Query: 655      atccagaaagagtccac 671
                |||||||||||||||||
Sbjct: 42239552 atccagaaagagtccac 42239536


>Sscrofa_Chr10 
||          Length = 79102373

 Score =  519 bits (262), Expect = e-144
 Identities = 346/376 (92%), Gaps = 16/376 (4%)
 Strand = Plus / Minus

                                                                            
Query: 703      atgcagatcttcgtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagt 762
                ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29934422 atgcagatctttgtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagt 29934363

                                                                            
Query: 763      gacaccatcgagaatgtgaaggccaagatccaggataaggaaggcatt-ccccctgacca 821
                ||||||| |||||               |||||||||||||||||||| ||||| |||| 
Sbjct: 29934362 gacaccaccgaga---------------tccaggataaggaaggcattgccccccgaccg 29934318

                                                                            
Query: 822      gcagaggctcatctttgcaggcaagcagctggaagatggccgcactctttctgattacaa 881
                |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 29934317 gcagaggctcatctttgcaggcaagccgctggaggatggccgcactctttctgattacaa 29934258

                                                                            
Query: 882      catccagaaagagtccactctccatctggtcctccgtctgaggggtggctgctaattctc 941
                |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || 
Sbjct: 29934257 catccagaaagagtccaccctccatctggtcctccgtctgaggggtggctgctaatcctt 29934198

                                                                            
Query: 942      cagtcttgcattcataatgcccactgatggcattactctgcactctagccatttgcccca 1001
                |||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||
Sbjct: 29934197 cagtcttgcattcataatgcctgatgatggcattactctgcactctagccatttgcccca 29934138

                                                                            
Query: 1002     atttaagtttagaaattaccagtttcagtaatagctgaacctgtccaaaatgttaataaa 1061
                ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 29934137 atttaagtttagaaattaccagtttcagtaatagctgaacctgtccaaaatgtaaagaaa 29934078

                                
Query: 1062     ggttttgttgcatggt 1077
                ||||||||||||||||
Sbjct: 29934077 ggttttgttgcatggt 29934062



 Score =  331 bits (167), Expect = 6e-88
 Identities = 245/273 (89%), Gaps = 16/273 (5%)
 Strand = Plus / Minus

                                                                            
Query: 202      gtgtgattggcttcacagcgtctgtgccttcactcacaggtcaaaatgcagatcttcgtg 261
                |||||||||| |||||||| ||||||||||  |||||||||||||||||||||||| |||
Sbjct: 29934467 gtgtgattggattcacagcatctgtgcctttgctcacaggtcaaaatgcagatctttgtg 29934408

                                                                            
Query: 262      aagaccctgaccggcaagaccatcaccctggaggtggagcccagtgacaccatcgagaat 321
                |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||  
Sbjct: 29934407 aagaccttgaccggcaagaccatcaccctggaggtggagcccagtgacaccaccgaga-- 29934350

                                                                            
Query: 322      gtgaaggccaagatccaggataaggagggcatt-ccccccgaccagcagaggctcatctt 380
                             ||||||||||||| |||||| |||||||||| |||||||||||||||
Sbjct: 29934349 -------------tccaggataaggaaggcattgccccccgaccggcagaggctcatctt 29934303

                                                                            
Query: 381      tgcaggcaagcagctggaggatggccgcactctttctgattacaacatccagaaagagtc 440
                ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29934302 tgcaggcaagccgctggaggatggccgcactctttctgattacaacatccagaaagagtc 29934243

                                                 
Query: 441      caccctccatctggttctgcgtctgaggggtgg 473
                ||||||||||||||| || ||||||||||||||
Sbjct: 29934242 caccctccatctggtcctccgtctgaggggtgg 29934210



 Score =  274 bits (138), Expect = 1e-70
 Identities = 204/228 (89%), Gaps = 16/228 (7%)
 Strand = Plus / Minus

                                                                            
Query: 475      atgcagatcttcgtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagt 534
                ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29934422 atgcagatctttgtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagt 29934363

                                                                            
Query: 535      gacaccatcgagaatgtgaaggccaagatccaggataaggaaggcatt-ccccccgacca 593
                ||||||| |||||               |||||||||||||||||||| |||||||||| 
Sbjct: 29934362 gacaccaccgaga---------------tccaggataaggaaggcattgccccccgaccg 29934318

                                                                            
Query: 594      gcagaggctcatctttgcaggcaagcagctggaagatggccgcactctttctgattacaa 653
                |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 29934317 gcagaggctcatctttgcaggcaagccgctggaggatggccgcactctttctgattacaa 29934258

                                                                
Query: 654      catccagaaagagtccactctccatctggttctgcgtctgaggggtgg 701
                |||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct: 29934257 catccagaaagagtccaccctccatctggtcctccgtctgaggggtgg 29934210


>Sscrofa_Chr08 
||          Length = 148491826

 Score =  228 bits (115), Expect = 7e-57
 Identities = 289/346 (83%), Gaps = 2/346 (0%)
 Strand = Plus / Plus

                                                                            
Query: 731      gcaagaccatcaccctggaggtggagcccagtgacaccatcgagaatgtgaaggccaaga 790
                |||||||| ||  |||||||||||||||||||||| ||   |||||   ||||||| |||
Sbjct: 11763273 gcaagaccgtcctcctggaggtggagcccagtgaccccgctgagaacccgaaggcccaga 11763332

                                                                            
Query: 791      tccaggataaggaaggcattccccctgaccagcagaggctcatctttgcaggcaagcagc 850
                |||||||||||||||||||  |||||| ||||||||||||| ||||||||||| | ||||
Sbjct: 11763333 tccaggataaggaaggcatctcccctggccagcagaggctcgtctttgcaggccaacagc 11763392

                                                                            
Query: 851      tggaagatggccgcactctttctgattacaacatccagaaagagtccactctccatctgg 910
                  ||||||||||  |||||  |||||| || ||| ||||||||||| || || ||  |||
Sbjct: 11763393 cagaagatggccagactct--ctgattgcagcattcagaaagagtcgacgctgcacgtgg 11763450

                                                                            
Query: 911      tcctccgtctgaggggtggctgctaattctccagtcttgcattcataatgcccactgatg 970
                |||||||||| ||||| ||||| ||||||| ||| | ||| | ||| ||| |||||| ||
Sbjct: 11763451 tcctccgtctaaggggcggctgttaattcttcagccctgcttgcatcatggccactggtg 11763510

                                                                            
Query: 971      gcattactctgcactctagccatttgccccaatttaagtttagaaattaccagtttcagt 1030
                | ||  |||||  ||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 11763511 gtatccctctgtgctctagccatttggcccaatttaagtttaaaaattaccagtttcagt 11763570

                                                              
Query: 1031     aatagctgaacctgtccaaaatgttaataaaggttttgttgcatgg 1076
                | |||||||||||||   | ||||||| |||| | |||||||||||
Sbjct: 11763571 actagctgaacctgtttgatatgttaagaaagatcttgttgcatgg 11763616



 Score =  111 bits (56), Expect = 1e-21
 Identities = 198/243 (81%), Gaps = 3/243 (1%)
 Strand = Plus / Plus

                                                                            
Query: 427      atccagaaagagtccaccctccatctggttctgcgtctgaggggtggtatgcag-atctt 485
                |||||||||||||| ||| | |  | ||| |||| ||||||||||| ||||||| | |  
Sbjct: 11763196 atccagaaagagtcaaccttgctaccggtcctgcctctgaggggtgatatgcagcacccg 11763255

                                                                            
Query: 486      cgtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagtgacaccatcga 545
                 ||||||||  ||| | |||||||| ||  |||||||||||||||||||||| ||   ||
Sbjct: 11763256 ggtgaagactctgatcagcaagaccgtcctcctggaggtggagcccagtgaccccgctga 11763315

                                                                            
Query: 546      gaatgtgaaggccaagatccaggataaggaaggcattccccccgaccagcagaggctcat 605
                |||   ||||||| ||||||||||||||||||||||  |||| | ||||||||||||| |
Sbjct: 11763316 gaacccgaaggcccagatccaggataaggaaggcatctcccctggccagcagaggctcgt 11763375

                                                                            
Query: 606      ctttgcaggcaagcagctggaagatggccgcactctttctgattacaacatccagaaaga 665
                |||||||||| | ||||  ||||||||||  ||||  ||||||| || ||| ||||||||
Sbjct: 11763376 ctttgcaggccaacagccagaagatggccagactc--tctgattgcagcattcagaaaga 11763433

                   
Query: 666      gtc 668
                |||
Sbjct: 11763434 gtc 11763436



 Score =  101 bits (51), Expect = 1e-18
 Identities = 150/182 (82%), Gaps = 2/182 (1%)
 Strand = Plus / Plus

                                                                            
Query: 259      gtgaagaccctgaccggcaagaccatcaccctggaggtggagcccagtgacaccatcgag 318
                |||||||| |||| | |||||||| ||  |||||||||||||||||||||| ||   |||
Sbjct: 11763257 gtgaagactctgatcagcaagaccgtcctcctggaggtggagcccagtgaccccgctgag 11763316

                                                                            
Query: 319      aatgtgaaggccaagatccaggataaggagggcattccccccgaccagcagaggctcatc 378
                ||   ||||||| |||||||||||||||| |||||  |||| | ||||||||||||| ||
Sbjct: 11763317 aacccgaaggcccagatccaggataaggaaggcatctcccctggccagcagaggctcgtc 11763376

                                                                            
Query: 379      tttgcaggcaagcagctggaggatggccgcactctttctgattacaacatccagaaagag 438
                ||||||||| | ||||  || |||||||  ||||  ||||||| || ||| |||||||||
Sbjct: 11763377 tttgcaggccaacagccagaagatggccagactc--tctgattgcagcattcagaaagag 11763434

                  
Query: 439      tc 440
                ||
Sbjct: 11763435 tc 11763436



 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 160/199 (80%), Gaps = 2/199 (1%)
 Strand = Plus / Minus

                                                                           
Query: 248     tgcagatcttcgtgaagaccctgaccggcaagaccatcaccctggaggtggagcccagtg 307
               ||||| |||| |||||||||| | | ||  ||||| ||||||||||||||||||| ||||
Sbjct: 3018032 tgcaggtcttggtgaagaccccgccaggtgagaccctcaccctggaggtggagcctagtg 3017973

                                                                           
Query: 308     acaccatcgagaatgtgaaggccaagatccaggataaggagggcattccccccgaccagc 367
               |  |||  |||||||  |  || || ||||||| |||||||||||| || || |||||||
Sbjct: 3017972 atgccactgagaatgccagagctaaaatccaggctaaggagggcatcccgcctgaccagc 3017913

                                                                           
Query: 368     agaggctcatctttgcaggcaagcagctggaggatggccgcactctttctgattacaaca 427
               || | || |  ||||| ||||| ||||||||||||||| | || || || ||  ||| | 
Sbjct: 3017912 agcgtctga-atttgccggcaaacagctggaggatggctg-acgctctcagaccacaccg 3017855

                                  
Query: 428     tccagaaagagtccaccct 446
               |||||||||||||||||||
Sbjct: 3017854 tccagaaagagtccaccct 3017836


>Sscrofa_Chr15 
||          Length = 157681621

 Score =  198 bits (100), Expect = 6e-48
 Identities = 132/140 (94%), Gaps = 2/140 (1%)
 Strand = Plus / Plus

                                                                            
Query: 718      aagaccttgaccggcaagaccatcaccctggaggtggagcccagtgacaccatcgagaat 777
                |||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 70557861 aagaccttaaccagcaagaccatcaccctggaggtggagcccagtgacaccat-gagaat 70557919

                                                                            
Query: 778      gtgaaggccaagatccaggataaggaaggcattccccctgaccagcagaggctcatcttt 837
                ||||||||||||||||||||||||||||||| |||  ||||||||||| |||||||||||
Sbjct: 70557920 gtgaaggccaagatccaggataaggaaggca-tccagctgaccagcagcggctcatcttt 70557978

                                    
Query: 838      gcaggcaagcagctggaaga 857
                |||||||| |||||||||||
Sbjct: 70557979 gcaggcaaacagctggaaga 70557998



 Score =  190 bits (96), Expect = 1e-45
 Identities = 131/140 (93%), Gaps = 2/140 (1%)
 Strand = Plus / Plus

                                                                            
Query: 490      aagaccttgaccggcaagaccatcaccctggaggtggagcccagtgacaccatcgagaat 549
                |||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 70557861 aagaccttaaccagcaagaccatcaccctggaggtggagcccagtgacaccat-gagaat 70557919

                                                                            
Query: 550      gtgaaggccaagatccaggataaggaaggcattccccccgaccagcagaggctcatcttt 609
                ||||||||||||||||||||||||||||||| |||  | ||||||||| |||||||||||
Sbjct: 70557920 gtgaaggccaagatccaggataaggaaggca-tccagctgaccagcagcggctcatcttt 70557978

                                    
Query: 610      gcaggcaagcagctggaaga 629
                |||||||| |||||||||||
Sbjct: 70557979 gcaggcaaacagctggaaga 70557998



 Score =  170 bits (86), Expect = 1e-39
 Identities = 139/154 (90%), Gaps = 2/154 (1%)
 Strand = Plus / Plus

                                                                            
Query: 245      aaatgcagatcttcgtgaagaccctgaccggcaagaccatcaccctggaggtggagccca 304
                ||||||| ||||||   |||||| | ||| ||||||||||||||||||||||||||||||
Sbjct: 70557844 aaatgcaaatcttcaccaagaccttaaccagcaagaccatcaccctggaggtggagccca 70557903

                                                                            
Query: 305      gtgacaccatcgagaatgtgaaggccaagatccaggataaggagggcattccccccgacc 364
                |||||||||| |||||||||||||||||||||||||||||||| |||| |||  | ||||
Sbjct: 70557904 gtgacaccat-gagaatgtgaaggccaagatccaggataaggaaggca-tccagctgacc 70557961

                                                  
Query: 365      agcagaggctcatctttgcaggcaagcagctgga 398
                ||||| ||||||||||||||||||| ||||||||
Sbjct: 70557962 agcagcggctcatctttgcaggcaaacagctgga 70557995


>Sscrofa_Chr02 
||          Length = 162569375

 Score =  127 bits (64), Expect = 2e-26
 Identities = 94/104 (90%)
 Strand = Plus / Plus

                                                                            
Query: 247      atgcagatcttcgtgaagaccctgaccggcaagaccatcaccctggaggtggagcccagt 306
                ||||||||||| |||||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct: 59062540 atgcagatctttgtgaagaccctgacgggcaagaccatcacccttgaggtcgagcccagt 59062599

                                                            
Query: 307      gacaccatcgagaatgtgaaggccaagatccaggataaggaggg 350
                || ||||| |||||||| || || || |||||||||||||||||
Sbjct: 59062600 gataccattgagaatgtcaaagctaaaatccaggataaggaggg 59062643



 Score =  113 bits (57), Expect = 3e-22
 Identities = 90/101 (89%)
 Strand = Plus / Plus

                                                                            
Query: 475      atgcagatcttcgtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagt 534
                ||||||||||| ||||||||| |||| ||||||||||||||||| ||||| |||||||||
Sbjct: 59062540 atgcagatctttgtgaagaccctgacgggcaagaccatcacccttgaggtcgagcccagt 59062599

                                                         
Query: 535      gacaccatcgagaatgtgaaggccaagatccaggataagga 575
                || ||||| |||||||| || || || ||||||||||||||
Sbjct: 59062600 gataccattgagaatgtcaaagctaaaatccaggataagga 59062640



 Score =  113 bits (57), Expect = 3e-22
 Identities = 90/101 (89%)
 Strand = Plus / Plus

                                                                            
Query: 703      atgcagatcttcgtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagt 762
                ||||||||||| ||||||||| |||| ||||||||||||||||| ||||| |||||||||
Sbjct: 59062540 atgcagatctttgtgaagaccctgacgggcaagaccatcacccttgaggtcgagcccagt 59062599

                                                         
Query: 763      gacaccatcgagaatgtgaaggccaagatccaggataagga 803
                || ||||| |||||||| || || || ||||||||||||||
Sbjct: 59062600 gataccattgagaatgtcaaagctaaaatccaggataagga 59062640



 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 76/89 (85%)
 Strand = Plus / Plus

                                                                            
Query: 804      aggcattccccctgaccagcagaggctcatctttgcaggcaagcagctggaagatggccg 863
                |||||| || |||||||||||| | || || ||||| ||||| |||||||| ||||||||
Sbjct: 59062890 aggcatcccacctgaccagcagcgtctgatttttgctggcaaacagctggaggatggccg 59062949

                                             
Query: 864      cactctttctgattacaacatccagaaag 892
                |||||| || || ||||| ||||||||||
Sbjct: 59062950 cactctctcagactacaatatccagaaag 59062978



 Score = 71.9 bits (36), Expect = 9e-10
 Identities = 66/76 (86%)
 Strand = Plus / Plus

                                                                            
Query: 361      gaccagcagaggctcatctttgcaggcaagcagctggaggatggccgcactctttctgat 420
                ||||||||| | || || ||||| ||||| ||||||||||||||||||||||| || || 
Sbjct: 59062903 gaccagcagcgtctgatttttgctggcaaacagctggaggatggccgcactctctcagac 59062962

                                
Query: 421      tacaacatccagaaag 436
                ||||| ||||||||||
Sbjct: 59062963 tacaatatccagaaag 59062978



 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 75/89 (84%)
 Strand = Plus / Plus

                                                                            
Query: 576      aggcattccccccgaccagcagaggctcatctttgcaggcaagcagctggaagatggccg 635
                |||||| || || ||||||||| | || || ||||| ||||| |||||||| ||||||||
Sbjct: 59062890 aggcatcccacctgaccagcagcgtctgatttttgctggcaaacagctggaggatggccg 59062949

                                             
Query: 636      cactctttctgattacaacatccagaaag 664
                |||||| || || ||||| ||||||||||
Sbjct: 59062950 cactctctcagactacaatatccagaaag 59062978


>Sscrofa_Chr01 
||          Length = 315321322

 Score =  107 bits (54), Expect = 2e-20
 Identities = 105/122 (86%)
 Strand = Plus / Plus

                                                                             
Query: 787       aagatccaggataaggaaggcattccccctgaccagcagaggctcatctttgcaggcaag 846
                 |||||||||||||||||||| ||||| ||||||||||| || || |||| ||| ||||||
Sbjct: 286957927 aagatccaggataaggaaggaattcctcctgaccagcaaagactgatctctgctggcaag 286957986

                                                                             
Query: 847       cagctggaagatggccgcactctttctgattacaacatccagaaagagtccactctccat 906
                 || ||||||||||| || ||| | ||||| |||||||| || || ||||||||||| |||
Sbjct: 286957987 caactggaagatggacgtactttgtctgactacaacattcaaaaggagtccactcttcat 286958046

                   
Query: 907       ct 908
                 ||
Sbjct: 286958047 ct 286958048



 Score = 99.6 bits (50), Expect = 4e-18
 Identities = 104/122 (85%)
 Strand = Plus / Plus

                                                                             
Query: 559       aagatccaggataaggaaggcattccccccgaccagcagaggctcatctttgcaggcaag 618
                 |||||||||||||||||||| ||||| || |||||||| || || |||| ||| ||||||
Sbjct: 286957927 aagatccaggataaggaaggaattcctcctgaccagcaaagactgatctctgctggcaag 286957986

                                                                             
Query: 619       cagctggaagatggccgcactctttctgattacaacatccagaaagagtccactctccat 678
                 || ||||||||||| || ||| | ||||| |||||||| || || ||||||||||| |||
Sbjct: 286957987 caactggaagatggacgtactttgtctgactacaacattcaaaaggagtccactcttcat 286958046

                   
Query: 679       ct 680
                 ||
Sbjct: 286958047 ct 286958048



 Score = 75.8 bits (38), Expect = 6e-11
 Identities = 101/122 (82%)
 Strand = Plus / Plus

                                                                             
Query: 331       aagatccaggataaggagggcattccccccgaccagcagaggctcatctttgcaggcaag 390
                 ||||||||||||||||| || ||||| || |||||||| || || |||| ||| ||||||
Sbjct: 286957927 aagatccaggataaggaaggaattcctcctgaccagcaaagactgatctctgctggcaag 286957986

                                                                             
Query: 391       cagctggaggatggccgcactctttctgattacaacatccagaaagagtccaccctccat 450
                 || ||||| ||||| || ||| | ||||| |||||||| || || |||||||| || |||
Sbjct: 286957987 caactggaagatggacgtactttgtctgactacaacattcaaaaggagtccactcttcat 286958046

                   
Query: 451       ct 452
                 ||
Sbjct: 286958047 ct 286958048


>gb|GL894030.1| Sus scrofa unplaced genomic scaffold chrU_scaffold2736
          Length = 39926

 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 120/146 (82%)
 Strand = Plus / Plus

                                                                         
Query: 715   gtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagtgacaccatcgag 774
             ||||||||| |||| |||||||||||||| || ||||| || |||   || ||  | || 
Sbjct: 37240 gtgaagaccctgacaggcaagaccatcactctcgaggttgaaccctcagatacattagaa 37299

                                                                         
Query: 775   aatgtgaaggccaagatccaggataaggaaggcattccccctgaccagcagaggctcatc 834
             ||||| ||||| |||||||||||||||  ||| ||||| ||||||||||| || || | |
Sbjct: 37300 aatgtaaaggctaagatccaggataagataggaattccgcctgaccagcaaagactgacc 37359

                                       
Query: 835   tttgcaggcaagcagctggaagatgg 860
             ||||| |||||||| |||||||||||
Sbjct: 37360 tttgctggcaagcaactggaagatgg 37385



 Score = 75.8 bits (38), Expect = 6e-11
 Identities = 119/146 (81%)
 Strand = Plus / Plus

                                                                         
Query: 487   gtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagtgacaccatcgag 546
             ||||||||| |||| |||||||||||||| || ||||| || |||   || ||  | || 
Sbjct: 37240 gtgaagaccctgacaggcaagaccatcactctcgaggttgaaccctcagatacattagaa 37299

                                                                         
Query: 547   aatgtgaaggccaagatccaggataaggaaggcattccccccgaccagcagaggctcatc 606
             ||||| ||||| |||||||||||||||  ||| ||||| || |||||||| || || | |
Sbjct: 37300 aatgtaaaggctaagatccaggataagataggaattccgcctgaccagcaaagactgacc 37359

                                       
Query: 607   tttgcaggcaagcagctggaagatgg 632
             ||||| |||||||| |||||||||||
Sbjct: 37360 tttgctggcaagcaactggaagatgg 37385


>Sscrofa_Chr03 
||          Length = 144787322

 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 66/77 (85%)
 Strand = Plus / Minus

                                                                            
Query: 808      attccccctgaccagcagaggctcatctttgcaggcaagcagctggaagatggccgcact 867
                ||||| ||||||||||| || || |||||||| |||||||| ||||||||||| || |||
Sbjct: 90775271 attcctcctgaccagcaaagactgatctttgctggcaagcaactggaagatggacgtact 90775212

                                 
Query: 868      ctttctgattacaacat 884
                 | ||||| ||||||||
Sbjct: 90775211 ttgtctgactacaacat 90775195



 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                                  
Query: 247      atgcagatcttcgtgaagaccctgaccggcaagaccatcaccctggaggt 296
                |||||||| ||||||||||| ||||| |||||||||||||| || |||||
Sbjct: 90776264 atgcagatattcgtgaagacgctgacgggcaagaccatcactctcgaggt 90776215


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,091,980
Number of extensions: 223
Number of successful extensions: 223
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 37
Length of query: 1461
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1440
Effective length of database: 2,808,413,156
Effective search space: 4044114944640
Effective search space used: 4044114944640
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)