Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001573
(1172 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001035577.1| elongation factor 1-gamma [Bos taurus]. 654 0.0
Alignment gi|XP_581858.2| PREDICTED: valyl-tRNA synthetase-like [Bos taur... 119 5e-27
>ref|NP_001035577.1| elongation factor 1-gamma [Bos taurus].
Length = 440
Score = 654 bits (1686), Expect = 0.0
Identities = 323/372 (86%), Positives = 330/372 (88%), Gaps = 3/372 (0%)
Frame = +1
Query: 55 MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNHTPEFLRKFPAGKVPA 234
MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTN TPEFLRKFPAGKVPA
Sbjct: 1 MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPA 60
Query: 235 FEGDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI 414
FEGDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI
Sbjct: 61 FEGDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI 120
Query: 415 MHYNKQATENAKDEVRRVLGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF 594
MH+NKQATENAK+EVRR+LGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF
Sbjct: 121 MHHNKQATENAKEEVRRILGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF 180
Query: 595 RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSR-- 768
RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSR
Sbjct: 181 RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSREE 240
Query: 769 -XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKAKDPFAHLPKSTFVLDEFKRKY 945
PKAKDPFAHLPKSTFVLDEFKRKY
Sbjct: 241 KLKPQAERKEGKEEKKAAAPAPEEELDECEQALAAEPKAKDPFAHLPKSTFVLDEFKRKY 300
Query: 946 SNEDTLSVALPYFWEHFDKDGWSLWYSEYRFPEELTQTFMSCNLITGMFQRLDNLKKNAF 1125
SNEDTLSVALPYFW+HFDKDGWSLWYSEYRFPEELTQTFMSCNLITGMFQRLD L+KNAF
Sbjct: 301 SNEDTLSVALPYFWDHFDKDGWSLWYSEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAF 360
Query: 1126 ASVILFGTTTAA 1161
ASVILFGT ++
Sbjct: 361 ASVILFGTNNSS 372
>ref|XP_581858.2| PREDICTED: valyl-tRNA synthetase-like [Bos taurus].
Length = 1252
Score = 119 bits (298), Expect = 5e-27
Identities = 79/212 (37%), Positives = 115/212 (54%), Gaps = 11/212 (5%)
Frame = +1
Query: 79 YPENWRAFKALIAAQYS---------GAQVRVLSAPPHFHFGQTNHTPEFLRKFPAGKVP 231
+P+ + + +ALIAA+Y GA RV PP + TP FP ++P
Sbjct: 9 HPDAFPSLRALIAARYGEAGEGPGWGGAHPRVCLQPP-----PASRTP-----FPPPRLP 58
Query: 232 AFE-GDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQ-WVSFADSDIVPPASTWVFPT 405
A E G G V+ + A++ + L G AA +VQ WVS+AD++++P A P
Sbjct: 59 ALEQGPGGLWVWGATAVSQLLWPAGLGGPGGSRAAVLVQQWVSYADTELIPAACGATLPA 118
Query: 406 LGIMHYNKQATENAKDEVRRVLGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQVLE 585
LG+ + Q + A + R L L+ L+ T+L GE TLAD+ V LL ++ VL+
Sbjct: 119 LGLRS-SAQDPQAALAALGRALSPLEEWLRLHTYLAGEAPTLADLAAVTALLLPFRYVLD 177
Query: 586 PSFRQAFPNTNRWFLTCINQPQFRAVLGEVKL 681
PS R+ + N RWF+TC+ QP+FRAVLGEV L
Sbjct: 178 PSARRIWGNVTRWFITCVQQPEFRAVLGEVVL 209
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,789,965
Number of extensions: 1303105
Number of successful extensions: 5226
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5219
Number of HSP's successfully gapped: 3
Length of query: 390
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 286
Effective length of database: 14,240,222
Effective search space: 4072703492
Effective search space used: 4072703492
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001573
(1172 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_861367.1| PREDICTED: similar to Elongation factor 1-gamma... 655 0.0
Alignment gi|XP_850257.1| PREDICTED: similar to Elongation factor 1-gamma... 655 0.0
Alignment gi|XP_867792.1| PREDICTED: similar to Elongation factor 1-gamma... 655 0.0
Alignment gi|XP_853577.1| PREDICTED: similar to Elongation factor 1-gamma... 655 0.0
Alignment gi|XP_867760.1| PREDICTED: similar to Elongation factor 1-gamma... 648 0.0
Alignment gi|XP_859367.1| PREDICTED: similar to Elongation factor 1-gamma... 647 0.0
Alignment gi|XP_849510.1| PREDICTED: similar to Elongation factor 1-gamma... 647 0.0
Alignment gi|XP_856191.1| PREDICTED: similar to Elongation factor 1-gamma... 621 e-178
Alignment gi|XP_848460.1| PREDICTED: similar to Elongation factor 1-gamma... 618 e-177
Alignment gi|XP_867777.1| PREDICTED: similar to Elongation factor 1-gamma... 612 e-175
>ref|XP_861367.1| PREDICTED: similar to Elongation factor 1-gamma (EF-1-gamma) (eEF-1B
gamma) isoform 12 [Canis familiaris].
Length = 437
Score = 655 bits (1690), Expect = 0.0
Identities = 320/369 (86%), Positives = 329/369 (89%)
Frame = +1
Query: 55 MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNHTPEFLRKFPAGKVPA 234
MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTN TPEFLRKFPAGKVPA
Sbjct: 1 MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPA 60
Query: 235 FEGDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI 414
FEGDDGFCVFESNAIAYYVSNEELRG+TPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI
Sbjct: 61 FEGDDGFCVFESNAIAYYVSNEELRGNTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI 120
Query: 415 MHYNKQATENAKDEVRRVLGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF 594
MH+NKQATENAK+EVRR+LGLLD HLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF
Sbjct: 121 MHHNKQATENAKEEVRRILGLLDTHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF 180
Query: 595 RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSRXX 774
RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSR
Sbjct: 181 RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSREE 240
Query: 775 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKAKDPFAHLPKSTFVLDEFKRKYSNE 954
PKAKDPFAHLPKSTFVLDEFKRKYSNE
Sbjct: 241 KQKPQAERKEEKKAAAPAPEEEMDECEQALAAEPKAKDPFAHLPKSTFVLDEFKRKYSNE 300
Query: 955 DTLSVALPYFWEHFDKDGWSLWYSEYRFPEELTQTFMSCNLITGMFQRLDNLKKNAFASV 1134
DTL+VALPYFWEHFDKDGWSLWY+EYRFPEELTQTFMSCNLITGMFQRLD L+KNAFASV
Sbjct: 301 DTLTVALPYFWEHFDKDGWSLWYAEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASV 360
Query: 1135 ILFGTTTAA 1161
ILFGT ++
Sbjct: 361 ILFGTNNSS 369
>ref|XP_850257.1| PREDICTED: similar to Elongation factor 1-gamma (EF-1-gamma) (eEF-1B
gamma) isoform 1 [Canis familiaris].
Length = 437
Score = 655 bits (1690), Expect = 0.0
Identities = 320/369 (86%), Positives = 329/369 (89%)
Frame = +1
Query: 55 MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNHTPEFLRKFPAGKVPA 234
MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTN TPEFLRKFPAGKVPA
Sbjct: 1 MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPA 60
Query: 235 FEGDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI 414
FEGDDGFCVFESNAIAYYVSNEELRG+TPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI
Sbjct: 61 FEGDDGFCVFESNAIAYYVSNEELRGNTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI 120
Query: 415 MHYNKQATENAKDEVRRVLGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF 594
MH+NKQATENAK+EVRR+LGLLD HLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF
Sbjct: 121 MHHNKQATENAKEEVRRILGLLDTHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF 180
Query: 595 RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSRXX 774
RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSR
Sbjct: 181 RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSREE 240
Query: 775 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKAKDPFAHLPKSTFVLDEFKRKYSNE 954
PKAKDPFAHLPKSTFVLDEFKRKYSNE
Sbjct: 241 KQKPQAERKEEKKAAAPAPEEEMDECEQALAAEPKAKDPFAHLPKSTFVLDEFKRKYSNE 300
Query: 955 DTLSVALPYFWEHFDKDGWSLWYSEYRFPEELTQTFMSCNLITGMFQRLDNLKKNAFASV 1134
DTL+VALPYFWEHFDKDGWSLWY+EYRFPEELTQTFMSCNLITGMFQRLD L+KNAFASV
Sbjct: 301 DTLTVALPYFWEHFDKDGWSLWYAEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASV 360
Query: 1135 ILFGTTTAA 1161
ILFGT ++
Sbjct: 361 ILFGTNNSS 369
>ref|XP_867792.1| PREDICTED: similar to Elongation factor 1-gamma (EF-1-gamma) (eEF-1B
gamma) isoform 24 [Canis familiaris].
Length = 443
Score = 655 bits (1690), Expect = 0.0
Identities = 320/369 (86%), Positives = 329/369 (89%)
Frame = +1
Query: 55 MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNHTPEFLRKFPAGKVPA 234
MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTN TPEFLRKFPAGKVPA
Sbjct: 1 MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPA 60
Query: 235 FEGDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI 414
FEGDDGFCVFESNAIAYYVSNEELRG+TPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI
Sbjct: 61 FEGDDGFCVFESNAIAYYVSNEELRGNTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI 120
Query: 415 MHYNKQATENAKDEVRRVLGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF 594
MH+NKQATENAK+EVRR+LGLLD HLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF
Sbjct: 121 MHHNKQATENAKEEVRRILGLLDTHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF 180
Query: 595 RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSRXX 774
RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSR
Sbjct: 181 RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSREE 240
Query: 775 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKAKDPFAHLPKSTFVLDEFKRKYSNE 954
PKAKDPFAHLPKSTFVLDEFKRKYSNE
Sbjct: 241 KQKPQAERKEEKKAAAPAPEEEMDECEQALAAEPKAKDPFAHLPKSTFVLDEFKRKYSNE 300
Query: 955 DTLSVALPYFWEHFDKDGWSLWYSEYRFPEELTQTFMSCNLITGMFQRLDNLKKNAFASV 1134
DTL+VALPYFWEHFDKDGWSLWY+EYRFPEELTQTFMSCNLITGMFQRLD L+KNAFASV
Sbjct: 301 DTLTVALPYFWEHFDKDGWSLWYAEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASV 360
Query: 1135 ILFGTTTAA 1161
ILFGT ++
Sbjct: 361 ILFGTNNSS 369
>ref|XP_853577.1| PREDICTED: similar to Elongation factor 1-gamma (EF-1-gamma) (eEF-1B
gamma) isoform 1 [Canis familiaris].
Length = 437
Score = 655 bits (1690), Expect = 0.0
Identities = 320/369 (86%), Positives = 329/369 (89%)
Frame = +1
Query: 55 MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNHTPEFLRKFPAGKVPA 234
MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTN TPEFLRKFPAGKVPA
Sbjct: 1 MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPA 60
Query: 235 FEGDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI 414
FEGDDGFCVFESNAIAYYVSNEELRG+TPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI
Sbjct: 61 FEGDDGFCVFESNAIAYYVSNEELRGNTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI 120
Query: 415 MHYNKQATENAKDEVRRVLGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF 594
MH+NKQATENAK+EVRR+LGLLD HLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF
Sbjct: 121 MHHNKQATENAKEEVRRILGLLDTHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF 180
Query: 595 RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSRXX 774
RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSR
Sbjct: 181 RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSREE 240
Query: 775 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKAKDPFAHLPKSTFVLDEFKRKYSNE 954
PKAKDPFAHLPKSTFVLDEFKRKYSNE
Sbjct: 241 KQKPQAERKEEKKAAAPAPEEEMDECEQALAAEPKAKDPFAHLPKSTFVLDEFKRKYSNE 300
Query: 955 DTLSVALPYFWEHFDKDGWSLWYSEYRFPEELTQTFMSCNLITGMFQRLDNLKKNAFASV 1134
DTL+VALPYFWEHFDKDGWSLWY+EYRFPEELTQTFMSCNLITGMFQRLD L+KNAFASV
Sbjct: 301 DTLTVALPYFWEHFDKDGWSLWYAEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASV 360
Query: 1135 ILFGTTTAA 1161
ILFGT ++
Sbjct: 361 ILFGTNNSS 369
>ref|XP_867760.1| PREDICTED: similar to Elongation factor 1-gamma (EF-1-gamma) (eEF-1B
gamma) isoform 20 [Canis familiaris].
Length = 445
Score = 648 bits (1671), Expect = 0.0
Identities = 320/377 (84%), Positives = 329/377 (87%), Gaps = 8/377 (2%)
Frame = +1
Query: 55 MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNHTPEFLRKFPAGKVPA 234
MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTN TPEFLRKFPAGKVPA
Sbjct: 1 MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPA 60
Query: 235 FEGDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI 414
FEGDDGFCVFESNAIAYYVSNEELRG+TPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI
Sbjct: 61 FEGDDGFCVFESNAIAYYVSNEELRGNTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI 120
Query: 415 MHYNKQ--------ATENAKDEVRRVLGLLDAHLKTRTFLVGERVTLADITVVCTLLWLY 570
MH+NKQ ATENAK+EVRR+LGLLD HLKTRTFLVGERVTLADITVVCTLLWLY
Sbjct: 121 MHHNKQKMGMSQNFATENAKEEVRRILGLLDTHLKTRTFLVGERVTLADITVVCTLLWLY 180
Query: 571 KQVLEPSFRQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPR 750
KQVLEPSFRQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPR
Sbjct: 181 KQVLEPSFRQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPR 240
Query: 751 KEKGSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKAKDPFAHLPKSTFVLDE 930
KEKGSR PKAKDPFAHLPKSTFVLDE
Sbjct: 241 KEKGSREEKQKPQAERKEEKKAAAPAPEEEMDECEQALAAEPKAKDPFAHLPKSTFVLDE 300
Query: 931 FKRKYSNEDTLSVALPYFWEHFDKDGWSLWYSEYRFPEELTQTFMSCNLITGMFQRLDNL 1110
FKRKYSNEDTL+VALPYFWEHFDKDGWSLWY+EYRFPEELTQTFMSCNLITGMFQRLD L
Sbjct: 301 FKRKYSNEDTLTVALPYFWEHFDKDGWSLWYAEYRFPEELTQTFMSCNLITGMFQRLDKL 360
Query: 1111 KKNAFASVILFGTTTAA 1161
+KNAFASVILFGT ++
Sbjct: 361 RKNAFASVILFGTNNSS 377
>ref|XP_859367.1| PREDICTED: similar to Elongation factor 1-gamma (EF-1-gamma) (eEF-1B
gamma) isoform 13 [Canis familiaris].
Length = 437
Score = 647 bits (1669), Expect = 0.0
Identities = 316/369 (85%), Positives = 327/369 (88%)
Frame = +1
Query: 55 MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNHTPEFLRKFPAGKVPA 234
MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTN TPEFLRKFPAGKVPA
Sbjct: 1 MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPA 60
Query: 235 FEGDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI 414
FEGDDGFCVFES+AIAYYV+NEELRG+TPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI
Sbjct: 61 FEGDDGFCVFESSAIAYYVNNEELRGNTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI 120
Query: 415 MHYNKQATENAKDEVRRVLGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF 594
MH+NKQATENAK+EVRR+LGLLD HLKTRTFLVG+RVTLADITVVCTLLWLYKQVLEPSF
Sbjct: 121 MHHNKQATENAKEEVRRILGLLDTHLKTRTFLVGKRVTLADITVVCTLLWLYKQVLEPSF 180
Query: 595 RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSRXX 774
RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEK SR
Sbjct: 181 RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKDSREE 240
Query: 775 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKAKDPFAHLPKSTFVLDEFKRKYSNE 954
PKAKDPFAHLPKSTFVLDEFKRKYSNE
Sbjct: 241 KQKLQAEWKEEKKAAAPAPEEEMDECEQALAAEPKAKDPFAHLPKSTFVLDEFKRKYSNE 300
Query: 955 DTLSVALPYFWEHFDKDGWSLWYSEYRFPEELTQTFMSCNLITGMFQRLDNLKKNAFASV 1134
DTL VALPYFWEHFDKDGWSLWY+EYRFPEELTQTFMSCNLITGMFQRLD L+KNAFASV
Sbjct: 301 DTLPVALPYFWEHFDKDGWSLWYAEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASV 360
Query: 1135 ILFGTTTAA 1161
ILFGT ++
Sbjct: 361 ILFGTNNSS 369
>ref|XP_849510.1| PREDICTED: similar to Elongation factor 1-gamma (EF-1-gamma) (eEF-1B
gamma) isoform 2 [Canis familiaris].
Length = 437
Score = 647 bits (1669), Expect = 0.0
Identities = 316/369 (85%), Positives = 327/369 (88%)
Frame = +1
Query: 55 MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNHTPEFLRKFPAGKVPA 234
MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTN TPEFLRKFPAGKVPA
Sbjct: 1 MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPA 60
Query: 235 FEGDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI 414
FEGDDGFCVFES+AIAYYV+NEELRG+TPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI
Sbjct: 61 FEGDDGFCVFESSAIAYYVNNEELRGNTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI 120
Query: 415 MHYNKQATENAKDEVRRVLGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF 594
MH+NKQATENAK+EVRR+LGLLD HLKTRTFLVG+RVTLADITVVCTLLWLYKQVLEPSF
Sbjct: 121 MHHNKQATENAKEEVRRILGLLDTHLKTRTFLVGKRVTLADITVVCTLLWLYKQVLEPSF 180
Query: 595 RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSRXX 774
RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEK SR
Sbjct: 181 RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKDSREE 240
Query: 775 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKAKDPFAHLPKSTFVLDEFKRKYSNE 954
PKAKDPFAHLPKSTFVLDEFKRKYSNE
Sbjct: 241 KQKLQAEWKEEKKAAAPAPEEEMDECEQALAAEPKAKDPFAHLPKSTFVLDEFKRKYSNE 300
Query: 955 DTLSVALPYFWEHFDKDGWSLWYSEYRFPEELTQTFMSCNLITGMFQRLDNLKKNAFASV 1134
DTL VALPYFWEHFDKDGWSLWY+EYRFPEELTQTFMSCNLITGMFQRLD L+KNAFASV
Sbjct: 301 DTLPVALPYFWEHFDKDGWSLWYAEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASV 360
Query: 1135 ILFGTTTAA 1161
ILFGT ++
Sbjct: 361 ILFGTNNSS 369
>ref|XP_856191.1| PREDICTED: similar to Elongation factor 1-gamma (EF-1-gamma) (eEF-1B
gamma) isoform 14 [Canis familiaris].
Length = 430
Score = 621 bits (1601), Expect = e-178
Identities = 307/375 (81%), Positives = 319/375 (85%)
Frame = +1
Query: 37 FLCGITMAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNHTPEFLRKFP 216
FLCGIT AAG LYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTN TPEFLRKFP
Sbjct: 4 FLCGITTAAGPLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFP 63
Query: 217 AGKVPAFEGDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWV 396
AGKVPAFEGDDGFCVFESNAIAYYVSNEELRG+TPEAAAQVVQWVSFADSDIVPPASTWV
Sbjct: 64 AGKVPAFEGDDGFCVFESNAIAYYVSNEELRGNTPEAAAQVVQWVSFADSDIVPPASTWV 123
Query: 397 FPTLGIMHYNKQATENAKDEVRRVLGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQ 576
PTLGIMH+NKQATENAK+EVRR+LGLLD HLKTRTFLVGERVTLADITVVCTLLWLYKQ
Sbjct: 124 LPTLGIMHHNKQATENAKEEVRRILGLLDTHLKTRTFLVGERVTLADITVVCTLLWLYKQ 183
Query: 577 VLEPSFRQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKE 756
VLEPSFRQAFPNTNRWFLTCINQPQF AVLGEVKLCEKM QFDAKKFAE + K RKE
Sbjct: 184 VLEPSFRQAFPNTNRWFLTCINQPQFWAVLGEVKLCEKMVQFDAKKFAEKKQKPQAERKE 243
Query: 757 KGSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKAKDPFAHLPKSTFVLDEFK 936
+ PKAKDPFAH PKSTFVLDEFK
Sbjct: 244 E----------------KKAAAPAPEEEMDACEQALAAEPKAKDPFAHPPKSTFVLDEFK 287
Query: 937 RKYSNEDTLSVALPYFWEHFDKDGWSLWYSEYRFPEELTQTFMSCNLITGMFQRLDNLKK 1116
RKYSNEDTL+VALPYFWEHFDKDGWSLWY+EY FPEELTQTFMSCNLITGMFQ+LD L+K
Sbjct: 288 RKYSNEDTLTVALPYFWEHFDKDGWSLWYAEYCFPEELTQTFMSCNLITGMFQQLDKLRK 347
Query: 1117 NAFASVILFGTTTAA 1161
NAFASVILFGT ++
Sbjct: 348 NAFASVILFGTNNSS 362
>ref|XP_848460.1| PREDICTED: similar to Elongation factor 1-gamma (EF-1-gamma) (eEF-1B
gamma) isoform 3 [Canis familiaris].
Length = 433
Score = 618 bits (1594), Expect = e-177
Identities = 305/375 (81%), Positives = 319/375 (85%)
Frame = +1
Query: 37 FLCGITMAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNHTPEFLRKFP 216
FLCGIT AAG LYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTN TPEFLRKFP
Sbjct: 4 FLCGITTAAGPLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFP 63
Query: 217 AGKVPAFEGDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWV 396
AGKVPAFEGDDGFCVFESNAIAYYVSNEELRG+TPEAAAQVVQWVSFADSDIVPPASTWV
Sbjct: 64 AGKVPAFEGDDGFCVFESNAIAYYVSNEELRGNTPEAAAQVVQWVSFADSDIVPPASTWV 123
Query: 397 FPTLGIMHYNKQATENAKDEVRRVLGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQ 576
PTLGIMH+NKQATENAK+EVRR+LGLLD HLKTRTFLVGERVTLADITVVCTLLWLYKQ
Sbjct: 124 LPTLGIMHHNKQATENAKEEVRRILGLLDTHLKTRTFLVGERVTLADITVVCTLLWLYKQ 183
Query: 577 VLEPSFRQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKE 756
VLEPSFRQAFPNTNRWFLTCINQPQF AVLGEVKLCEKM QFDAKKF S+ +K P+ E
Sbjct: 184 VLEPSFRQAFPNTNRWFLTCINQPQFWAVLGEVKLCEKMVQFDAKKFKGSREEKQKPQAE 243
Query: 757 KGSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKAKDPFAHLPKSTFVLDEFK 936
+ PKAKDPFAH PKSTFVLDEFK
Sbjct: 244 RKEEKKAAAPAPEEEMDACEQALAAE-------------PKAKDPFAHPPKSTFVLDEFK 290
Query: 937 RKYSNEDTLSVALPYFWEHFDKDGWSLWYSEYRFPEELTQTFMSCNLITGMFQRLDNLKK 1116
RKYSNEDTL+VALPYFWEHFDKDGWSLWY+EY FPEELTQTFMSCNLITGMFQ+LD L+K
Sbjct: 291 RKYSNEDTLTVALPYFWEHFDKDGWSLWYAEYCFPEELTQTFMSCNLITGMFQQLDKLRK 350
Query: 1117 NAFASVILFGTTTAA 1161
NAFASVILFGT ++
Sbjct: 351 NAFASVILFGTNNSS 365
>ref|XP_867777.1| PREDICTED: similar to Elongation factor 1-gamma (EF-1-gamma) (eEF-1B
gamma) isoform 22 [Canis familiaris].
Length = 405
Score = 612 bits (1577), Expect = e-175
Identities = 304/370 (82%), Positives = 317/370 (85%), Gaps = 1/370 (0%)
Frame = +1
Query: 55 MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNHTPEFLRKFPAGKVPA 234
MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTN TPEFLRKFPAGKVPA
Sbjct: 1 MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPA 60
Query: 235 FEGDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI 414
FEGDDGFCVFESNAIAYYVSNEELRG+TPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI
Sbjct: 61 FEGDDGFCVFESNAIAYYVSNEELRGNTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI 120
Query: 415 MHYNKQATENAKDEVRRVLGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF 594
MH+NKQATENAK+EVRR+LGLLD HLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF
Sbjct: 121 MHHNKQATENAKEEVRRILGLLDTHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF 180
Query: 595 RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFD-AKKFAESQPKKDTPRKEKGSRX 771
RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFD KK A P+++ E+
Sbjct: 181 RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDEEKKAAAPAPEEEMDECEQA--- 237
Query: 772 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKAKDPFAHLPKSTFVLDEFKRKYSN 951
PKAKDPFAHLPKSTFVLDEFKRKYSN
Sbjct: 238 ------------------------------LAAEPKAKDPFAHLPKSTFVLDEFKRKYSN 267
Query: 952 EDTLSVALPYFWEHFDKDGWSLWYSEYRFPEELTQTFMSCNLITGMFQRLDNLKKNAFAS 1131
EDTL+VALPYFWEHFDKDGWSLWY+EYRFPEELTQTFMSCNLITGMFQRLD L+KNAFAS
Sbjct: 268 EDTLTVALPYFWEHFDKDGWSLWYAEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFAS 327
Query: 1132 VILFGTTTAA 1161
VILFGT ++
Sbjct: 328 VILFGTNNSS 337
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,787,416
Number of extensions: 1346430
Number of successful extensions: 5757
Number of sequences better than 1.0e-05: 112
Number of HSP's gapped: 5676
Number of HSP's successfully gapped: 163
Length of query: 390
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 285
Effective length of database: 15,374,224
Effective search space: 4381653840
Effective search space used: 4381653840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001573
(1172 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001395.1| elongation factor 1-gamma [Homo sapiens]. 657 0.0
Alignment gi|NP_006286.1| valyl-tRNA synthetase [Homo sapiens]. 120 3e-27
>ref|NP_001395.1| elongation factor 1-gamma [Homo sapiens].
Length = 437
Score = 657 bits (1694), Expect = 0.0
Identities = 322/369 (87%), Positives = 330/369 (89%)
Frame = +1
Query: 55 MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNHTPEFLRKFPAGKVPA 234
MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTN TPEFLRKFPAGKVPA
Sbjct: 1 MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPA 60
Query: 235 FEGDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI 414
FEGDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI
Sbjct: 61 FEGDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI 120
Query: 415 MHYNKQATENAKDEVRRVLGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF 594
MH+NKQATENAK+EVRR+LGLLDA+LKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF
Sbjct: 121 MHHNKQATENAKEEVRRILGLLDAYLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF 180
Query: 595 RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSRXX 774
RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAE+QPKKDTPRKEKGSR
Sbjct: 181 RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAETQPKKDTPRKEKGSREE 240
Query: 775 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKAKDPFAHLPKSTFVLDEFKRKYSNE 954
PKAKDPFAHLPKSTFVLDEFKRKYSNE
Sbjct: 241 KQKPQAERKEEKKAAAPAPEEEMDECEQALAAEPKAKDPFAHLPKSTFVLDEFKRKYSNE 300
Query: 955 DTLSVALPYFWEHFDKDGWSLWYSEYRFPEELTQTFMSCNLITGMFQRLDNLKKNAFASV 1134
DTLSVALPYFWEHFDKDGWSLWYSEYRFPEELTQTFMSCNLITGMFQRLD L+KNAFASV
Sbjct: 301 DTLSVALPYFWEHFDKDGWSLWYSEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASV 360
Query: 1135 ILFGTTTAA 1161
ILFGT ++
Sbjct: 361 ILFGTNNSS 369
>ref|NP_006286.1| valyl-tRNA synthetase [Homo sapiens].
Length = 1264
Score = 120 bits (300), Expect = 3e-27
Identities = 87/252 (34%), Positives = 128/252 (50%), Gaps = 21/252 (8%)
Frame = +1
Query: 67 TLYT--YPENWRAFKALIAAQYS---------GAQVRVLSAPPHFHFGQTNHTPEFLRKF 213
TLY +P+ + + +ALIAA+Y GA R+ PP T+ TP F
Sbjct: 3 TLYVSPHPDAFPSLRALIAARYGEAGEGPGWGGAHPRICLQPP-----PTSRTP-----F 52
Query: 214 PAGKVPAFE-GDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQ-WVSFADSDIVPPAS 387
P ++PA E G G V+ + A+A + L G AA +VQ WVS+AD++++P A
Sbjct: 53 PPPRLPALEQGPGGLWVWGATAVAQLLWPAGLGGPGGSRAAVLVQQWVSYADTELIPAAC 112
Query: 388 TWVFPTLGIMHYNKQATENAKDEVRRVLGLLDAHLKTRTFLVGERVTLADITVVCTLLWL 567
P LG+ + Q + + R L L+ L+ T+L GE TLAD+ V LL
Sbjct: 113 GATLPALGLRS-SAQDPQAVLGALGRALSPLEEWLRLHTYLAGEAPTLADLAAVTALLLP 171
Query: 568 YKQVLEPSFRQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAE-------- 723
++ VL+P R+ + N RWF+TC+ QP+FRAVLGEV L + E
Sbjct: 172 FRYVLDPPARRIWNNVTRWFVTCVRQPEFRAVLGEVVLYSGARPLSHQPGPEAPALPKTA 231
Query: 724 SQPKKDTPRKEK 759
+Q KK+ ++EK
Sbjct: 232 AQLKKEAKKREK 243
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,959,697
Number of extensions: 1316766
Number of successful extensions: 5228
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5220
Number of HSP's successfully gapped: 2
Length of query: 390
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 286
Effective length of database: 14,868,908
Effective search space: 4252507688
Effective search space used: 4252507688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001573
(1172 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080283.3| elongation factor 1-gamma [Mus musculus]. 656 0.0
Alignment gi|NP_035820.3| valyl-tRNA synthetase [Mus musculus]. 114 2e-25
>ref|NP_080283.3| elongation factor 1-gamma [Mus musculus].
Length = 437
Score = 656 bits (1692), Expect = 0.0
Identities = 320/369 (86%), Positives = 329/369 (89%)
Frame = +1
Query: 55 MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNHTPEFLRKFPAGKVPA 234
MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTN TPEFLRKFPAGKVPA
Sbjct: 1 MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPA 60
Query: 235 FEGDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI 414
FEGDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI
Sbjct: 61 FEGDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI 120
Query: 415 MHYNKQATENAKDEVRRVLGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF 594
MH+NKQATENAK+EV+R+LGLLD HLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF
Sbjct: 121 MHHNKQATENAKEEVKRILGLLDTHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF 180
Query: 595 RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSRXX 774
RQAFPNTNRWFLTCINQPQFRA+LGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSR
Sbjct: 181 RQAFPNTNRWFLTCINQPQFRAILGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSREE 240
Query: 775 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKAKDPFAHLPKSTFVLDEFKRKYSNE 954
PKAKDPFAHLPKSTFVLDEFKRKYSNE
Sbjct: 241 KQKPQAERKEEKKAAAPAPEEEMDECEQALAAEPKAKDPFAHLPKSTFVLDEFKRKYSNE 300
Query: 955 DTLSVALPYFWEHFDKDGWSLWYSEYRFPEELTQTFMSCNLITGMFQRLDNLKKNAFASV 1134
DTLSVALPYFWEHFDKDGWSLWY+EYRFPEELTQTFMSCNLITGMFQRLD L+KNAFASV
Sbjct: 301 DTLSVALPYFWEHFDKDGWSLWYAEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASV 360
Query: 1135 ILFGTTTAA 1161
ILFGT ++
Sbjct: 361 ILFGTNNSS 369
>ref|NP_035820.3| valyl-tRNA synthetase [Mus musculus].
Length = 1263
Score = 114 bits (284), Expect = 2e-25
Identities = 82/246 (33%), Positives = 127/246 (51%), Gaps = 19/246 (7%)
Frame = +1
Query: 79 YPENWRAFKALIAAQYS---------GAQVRVLSAPPHFHFGQTNHTPEFLRKFPAGKVP 231
+P+ + + +ALIAA+Y G R+ PP ++ TP FP ++P
Sbjct: 9 HPDAFPSLRALIAARYGEAGDGPGWGGPHPRICLQPP-----PSSRTP-----FPPPRLP 58
Query: 232 AFE-GDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQ-WVSFADSDIVPPASTWVFPT 405
A E G G V+ + A+A + L G AA +VQ WVS+AD++++P A P
Sbjct: 59 ALEQGPGGLWVWGAPAVAQLLWPAGLGGPGGSRAAVLVQQWVSYADTELIPAACGATLPA 118
Query: 406 LGIMHYNKQATENAKDEVRRVLGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQVLE 585
LG+ Q + A + + L L+ L+ T+L G+ TLAD+ V LL ++ VL+
Sbjct: 119 LGLRGPG-QDPQAALGALGKALNPLEDWLRLHTYLAGDAPTLADLAAVTALLLPFRYVLD 177
Query: 586 PSFRQAFPNTNRWFLTCINQPQFRAVLGEVKLC--------EKMAQFDAKKFAESQPKKD 741
PS R+ + N RWF TC+ QP+FRAVLGEV L + ++ A + +Q KK+
Sbjct: 178 PSARRIWGNVTRWFNTCVRQPEFRAVLGEVALYSGARSVTQQPGSEVIAPQKTPAQLKKE 237
Query: 742 TPRKEK 759
++EK
Sbjct: 238 AKKREK 243
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,696,780
Number of extensions: 1098085
Number of successful extensions: 4300
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4287
Number of HSP's successfully gapped: 2
Length of query: 390
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 287
Effective length of database: 12,523,851
Effective search space: 3594345237
Effective search space used: 3594345237
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001573
(1172 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001182307.1| valyl-tRNA synthetase [Sus scrofa]. 122 5e-28
>ref|NP_001182307.1| valyl-tRNA synthetase [Sus scrofa].
Length = 1265
Score = 122 bits (305), Expect = 5e-28
Identities = 86/246 (34%), Positives = 127/246 (51%), Gaps = 19/246 (7%)
Frame = +1
Query: 79 YPENWRAFKALIAAQYS---------GAQVRVLSAPPHFHFGQTNHTPEFLRKFPAGKVP 231
+P+ + + +ALIAA+Y GA RV PP + TP FP ++P
Sbjct: 9 HPDAFPSLRALIAARYGEAGEGPGWGGAHPRVCLQPP-----PASRTP-----FPPPRLP 58
Query: 232 AFE-GDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQ-WVSFADSDIVPPASTWVFPT 405
A E G G V+ + A+A + L G AA +VQ WVS+AD++++P A P
Sbjct: 59 ALEQGPGGLWVWGATAVAQLLWPAGLGGPGGSRAAVLVQQWVSYADTELIPAACGATLPA 118
Query: 406 LGIMHYNKQATENAKDEVRRVLGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQVLE 585
LG+ + Q + A + R L L+ L+ T+L GE TLAD+ V LL ++ VL+
Sbjct: 119 LGLRS-SAQDPQAALGALGRALSPLEEWLRLHTYLAGEAPTLADLAAVTALLLPFRYVLD 177
Query: 586 PSFRQAFPNTNRWFLTCINQPQFRAVLGEVKLC--------EKMAQFDAKKFAESQPKKD 741
PS R+ + N RWF+TC+ QP+FRAVLGEV L + + A +Q KK+
Sbjct: 178 PSARRIWGNVTRWFITCVQQPEFRAVLGEVVLFSGTRPASQQPGPEVSAPTKTAAQLKKE 237
Query: 742 TPRKEK 759
++EK
Sbjct: 238 AKKREK 243
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,513,028
Number of extensions: 838334
Number of successful extensions: 3325
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3316
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 289
Effective length of database: 8,829,335
Effective search space: 2551677815
Effective search space used: 2551677815
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001573
(1172 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 1499 0.0
Sscrofa_Chr02 408 e-111
Sscrofa_Chr11 64 2e-07
>Sscrofa_Chr01
|| Length = 315321322
Score = 1499 bits (756), Expect = 0.0
Identities = 1037/1128 (91%), Gaps = 2/1128 (0%)
Strand = Plus / Minus
Query: 37 tttctctgcggaatcaccatggcggccgggaccctgtacacatatcctgaaaactggagg 96
||||| ||| |||||||| ||| ||| ||||||||||||||||||||||||||||| |||
Sbjct: 93500641 tttctttgcagaatcaccgtggtggctgggaccctgtacacatatcctgaaaactgcagg 93500582
Query: 97 gccttcaaagccctcattgccgctcagtacagcggggctcaggtccgcgtgctctccgca 156
||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
Sbjct: 93500581 cccttcaaagccctcattgccgctcagtacagtggggctcaggtccatgtgctctccgaa 93500522
Query: 157 ccaccccacttccattttggccaaaccaaccacacccccgaatttctccgtaaatttcct 216
||| ||||||| ||||||||||||||||||||||||||| |||| |||| ||||||||||
Sbjct: 93500521 ccatcccacttacattttggccaaaccaaccacacccccaaattgctccataaatttcct 93500462
Query: 217 gccggtaaggttccagcatttgagggtgacgatggattctgtgtgttcgagagcaatgcc 276
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 93500461 gctggtaaggttccagcatttgagggtgacggtggattctgtgtgttcgagagcaatccc 93500402
Query: 277 attgcctactacgtgagcaacgaggagctgcggggaagtactcctgaggcagcagcccag 336
||||||| || ||||||||| |||||||| ||| ||||||| | ||||||||||||||
Sbjct: 93500401 attgcctgctgtgtgagcaacaaggagctgtgggaaagtacttccaaggcagcagcccag 93500342
Query: 337 gtggtgcagtgggtgagctttgccgatagcgacatcgtgccccccgccagtacctgggtg 396
|| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 93500341 gttgtgcagtgggtgagctttgccgatagcaacatcgtgcccccggccagtacctgggtg 93500282
Query: 397 ttccccaccttgggcatcatgcactacaacaagcaggccacagagaatgcaaaggatgag 456
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 93500281 ttccccaccttgggcatcatgcattacaacaagcaggccacagagaatgcaaaggatgag 93500222
Query: 457 gtgaggcgagttctggggctgctggatgctcacttgaagacgaggacttttctggtgggc 516
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 93500221 gtgaggtgagttctggggctgctggatgctcacttgaagacagggacttttctggtgggc 93500162
Query: 517 gaacgtgtgacgctggctgacatcacagttgtctgcaccctgttgtggctctacaaacag 576
||||||||||| ||||| |||||||||||||||||||||| | ||||||||||||||||
Sbjct: 93500161 gaacgtgtgacactggccaacatcacagttgtctgcaccctatcgtggctctacaaacag 93500102
Query: 577 gtcctggagccttctttccgccaggccttccccaataccaaccgctggttcctcacctgc 636
||||||||| |||||||| |||||||||| ||||||||||| ||||||||||||||||
Sbjct: 93500101 gtcctggagttttctttccaccaggccttctgcaataccaaccactggttcctcacctgc 93500042
Query: 637 attaaccagccccagttccgggctgtcttgggggaggtgaagctctgtgagaagatggcc 696
||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 93500041 gttaacaagccctagttccgggctgtcttggaggaggtgaagctctgtgagaagatggcc 93499982
Query: 697 cagtttgatgctaaaaagtttgcagagagtcagcctaaaaaggacaccccacggaaagag 756
|| ||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||
Sbjct: 93499981 caatttgatgctaaaaagtttgcagagaatcagcctaaaaatgacaccccatggaaagag 93499922
Query: 757 aaaggttctcgagaagagaagcagaagccccaggctgagcggaaagaggagaagaaggca 816
||||||||| ||| ||| |||||||| ||||||||||||| |||||||||||| ||||||
Sbjct: 93499921 aaaggttctggaggagaaaagcagaaaccccaggctgagcagaaagaggagaaaaaggca 93499862
Query: 817 gctgctcctgctcctgaggaggagctggacgagtgtgagcaggcgctggctgctgagccc 876
||||||| |||||||||||||| ||||||||||||||||||| |||||| ||||||||
Sbjct: 93499861 actgctcccactcctgaggaggagatggacgagtgtgagcaggcactggcttctgagccc 93499802
Query: 877 aaggccaaggatccctttgctcacctacccaagagtacctttgtgttggacgaatttaag 936
|||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||
Sbjct: 93499801 aaggccaaggatccctttgcccacctgtgcaagagcacctttgtgttggacgaatttaag 93499742
Query: 937 cgcaagtactccaacgaggacacactctctgtggcgctgccgtacttctgggagcacttt 996
|||||||||||||| ||||||| |||||||||||| |||| ||||| |||||||||||||
Sbjct: 93499741 cgcaagtactccaatgaggacatactctctgtggcactgctgtactcctgggagcacttt 93499682
Query: 997 gataaggatggctggtccttgtggtactcggagtaccgcttccctgaagagctcacccag 1056
||||||||||||||||||||||| ||||| ||||| |||| |||||||||||| ||||
Sbjct: 93499681 gataaggatggctggtccttgtgatactccaggtaccacttctctgaagagctcaaccag 93499622
Query: 1057 accttcatgagctgcaacctcatcactggaatgttccagcgattggacaacctgaagaag 1116
|||||||||||||||||||| |||||| |||||||||||| ||||||||| |||| ||||
Sbjct: 93499621 accttcatgagctgcaaccttatcactagaatgttccagcaattggacaagctgaggaag 93499562
Query: 1117 aatgcctttgccagtgtcattctctttggaacc-acaacagcagctcc 1163
|||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 93499561 aatg-ttttgccagtgtcattctctttggaaccaacaacagcagctcc 93499515
>Sscrofa_Chr02
|| Length = 162569375
Score = 408 bits (206), Expect = e-111
Identities = 206/206 (100%)
Strand = Plus / Plus
Query: 706 gctaaaaagtttgcagagagtcagcctaaaaaggacaccccacggaaagagaaaggttct 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8514373 gctaaaaagtttgcagagagtcagcctaaaaaggacaccccacggaaagagaaaggttct 8514432
Query: 766 cgagaagagaagcagaagccccaggctgagcggaaagaggagaagaaggcagctgctcct 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8514433 cgagaagagaagcagaagccccaggctgagcggaaagaggagaagaaggcagctgctcct 8514492
Query: 826 gctcctgaggaggagctggacgagtgtgagcaggcgctggctgctgagcccaaggccaag 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8514493 gctcctgaggaggagctggacgagtgtgagcaggcgctggctgctgagcccaaggccaag 8514552
Query: 886 gatccctttgctcacctacccaagag 911
||||||||||||||||||||||||||
Sbjct: 8514553 gatccctttgctcacctacccaagag 8514578
Score = 349 bits (176), Expect = 2e-93
Identities = 176/176 (100%)
Strand = Plus / Plus
Query: 910 agtacctttgtgttggacgaatttaagcgcaagtactccaacgaggacacactctctgtg 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8517274 agtacctttgtgttggacgaatttaagcgcaagtactccaacgaggacacactctctgtg 8517333
Query: 970 gcgctgccgtacttctgggagcactttgataaggatggctggtccttgtggtactcggag 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8517334 gcgctgccgtacttctgggagcactttgataaggatggctggtccttgtggtactcggag 8517393
Query: 1030 taccgcttccctgaagagctcacccagaccttcatgagctgcaacctcatcactgg 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8517394 taccgcttccctgaagagctcacccagaccttcatgagctgcaacctcatcactgg 8517449
Score = 321 bits (162), Expect = 5e-85
Identities = 162/162 (100%)
Strand = Plus / Plus
Query: 66 gaccctgtacacatatcctgaaaactggagggccttcaaagccctcattgccgctcagta 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8509143 gaccctgtacacatatcctgaaaactggagggccttcaaagccctcattgccgctcagta 8509202
Query: 126 cagcggggctcaggtccgcgtgctctccgcaccaccccacttccattttggccaaaccaa 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8509203 cagcggggctcaggtccgcgtgctctccgcaccaccccacttccattttggccaaaccaa 8509262
Query: 186 ccacacccccgaatttctccgtaaatttcctgccggtaaggt 227
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8509263 ccacacccccgaatttctccgtaaatttcctgccggtaaggt 8509304
Score = 295 bits (149), Expect = 3e-77
Identities = 149/149 (100%)
Strand = Plus / Plus
Query: 430 caggccacagagaatgcaaaggatgaggtgaggcgagttctggggctgctggatgctcac 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8511088 caggccacagagaatgcaaaggatgaggtgaggcgagttctggggctgctggatgctcac 8511147
Query: 490 ttgaagacgaggacttttctggtgggcgaacgtgtgacgctggctgacatcacagttgtc 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8511148 ttgaagacgaggacttttctggtgggcgaacgtgtgacgctggctgacatcacagttgtc 8511207
Query: 550 tgcaccctgttgtggctctacaaacaggt 578
|||||||||||||||||||||||||||||
Sbjct: 8511208 tgcaccctgttgtggctctacaaacaggt 8511236
Score = 287 bits (145), Expect = 7e-75
Identities = 145/145 (100%)
Strand = Plus / Plus
Query: 289 gtgagcaacgaggagctgcggggaagtactcctgaggcagcagcccaggtggtgcagtgg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8510203 gtgagcaacgaggagctgcggggaagtactcctgaggcagcagcccaggtggtgcagtgg 8510262
Query: 349 gtgagctttgccgatagcgacatcgtgccccccgccagtacctgggtgttccccaccttg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8510263 gtgagctttgccgatagcgacatcgtgccccccgccagtacctgggtgttccccaccttg 8510322
Query: 409 ggcatcatgcactacaacaagcagg 433
|||||||||||||||||||||||||
Sbjct: 8510323 ggcatcatgcactacaacaagcagg 8510347
Score = 264 bits (133), Expect = 1e-67
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 574 caggtcctggagccttctttccgccaggccttccccaataccaaccgctggttcctcacc 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8513891 caggtcctggagccttctttccgccaggccttccccaataccaaccgctggttcctcacc 8513950
Query: 634 tgcattaaccagccccagttccgggctgtcttgggggaggtgaagctctgtgagaagatg 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8513951 tgcattaaccagccccagttccgggctgtcttgggggaggtgaagctctgtgagaagatg 8514010
Query: 694 gcccagtttgatg 706
|||||||||||||
Sbjct: 8514011 gcccagtttgatg 8514023
Score = 139 bits (70), Expect = 4e-30
Identities = 86/90 (95%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 1084 ggaatgttccagcgattggacaacctgaagaagaatgcctttgccagtgtcattctcttt 1143
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 8517531 ggaatgttccagcgattggacaagctgaggaagaatgcctttgccagtgtcattctcttt 8517590
Query: 1144 ggaacc-acaacagcagctccttttctgga 1172
|||||| |||||||||||||| ||||||||
Sbjct: 8517591 ggaaccaacaacagcagctccatttctgga 8517620
Score = 131 bits (66), Expect = 9e-28
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 224 aggttccagcatttgagggtgacgatggattctgtgtgttcgagagcaatgccattgcct 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8509983 aggttccagcatttgagggtgacgatggattctgtgtgttcgagagcaatgccattgcct 8510042
Query: 284 actacg 289
||||||
Sbjct: 8510043 actacg 8510048
Score = 117 bits (59), Expect = 1e-23
Identities = 62/63 (98%)
Strand = Plus / Plus
Query: 4 ttactttgcggcagcgcggagagccccaccccctttctctgcggaatcaccatggcggcc 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8507993 ttactttgcggcagcgcagagagccccaccccctttctctgcggaatcaccatggcggcc 8508052
Query: 64 ggg 66
|||
Sbjct: 8508053 ggg 8508055
>Sscrofa_Chr11
|| Length = 87690581
Score = 63.9 bits (32), Expect = 2e-07
Identities = 114/140 (81%), Gaps = 1/140 (0%)
Strand = Plus / Minus
Query: 135 tcaggtccgcgtgctctccgcaccaccccacttccattttggccaaaccaaccacacccc 194
||||||| | ||||||| | || ||| ||||||||| ||||||||||||| | |||| |
Sbjct: 41555745 tcaggtctgtgtgctcttcacatcactccacttccactttggccaaaccagctgcacctc 41555686
Query: 195 cgaatttctccgtaaatttcctgccggtaaggttccagcatttgagggtgacgatggatt 254
| ||||||| |||||| |||| || ||| |||||||||||||| |||| ||||| ||
Sbjct: 41555685 tgcatttctctacaaattttctgctggaaagtttccagcatttgagagtgatgatgg-tt 41555627
Query: 255 ctgtgtgttcgagagcaatg 274
||| ||||| |||||||||
Sbjct: 41555626 ctgcgtgtttaagagcaatg 41555607
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,205,263
Number of extensions: 231
Number of successful extensions: 231
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 11
Length of query: 1172
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1151
Effective length of database: 2,808,413,156
Effective search space: 3232483542556
Effective search space used: 3232483542556
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)