Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001576
(1064 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001192115.1| hypothetical protein LOC524810 [Bos taurus]. 278 4e-75
Alignment gi|XP_002696848.1| PREDICTED: IgM [Bos taurus]. 105 5e-23
Alignment gi|XP_002696847.1| PREDICTED: IgM [Bos taurus]. 103 3e-22
Alignment gi|XP_002684044.1| PREDICTED: Ig heavy chain-like, partial [Bos... 103 3e-22
Alignment gi|XP_002683686.1| PREDICTED: hypothetical protein [Bos taurus]. 85 1e-16
Alignment gi|NP_001077269.1| immunoglobulin lambda-like polypeptide 1 [Bo... 70 3e-12
Alignment gi|XP_002694682.1| PREDICTED: hCG96018-like [Bos taurus]. 57 3e-08
Alignment gi|XP_002701782.1| PREDICTED: immunoglobulin lambda-like polype... 56 5e-08
>ref|NP_001192115.1| hypothetical protein LOC524810 [Bos taurus].
Length = 487
Score = 278 bits (712), Expect = 4e-75
Identities = 154/306 (50%), Positives = 193/306 (63%), Gaps = 9/306 (2%)
Frame = +2
Query: 86 WVVLFALL--QGVQGEEKLVDSGGGLVQPGGSLRLSCVGSGFLFSSYNMIWVRQAPGKGL 259
W +LF L +GV + +L +SG LV+P +L L+C SGF SSY + WVRQAPGK L
Sbjct: 5 WTLLFVLSAPRGVLSQVQLRESGPSLVKPSQTLSLTCTASGFSLSSYGINWVRQAPGKAL 64
Query: 260 EWLAGIDERGSETYYADSVKGRFTISRDNSQNTAYLRMNSLRTEDTARYYCARCYVG--G 433
E LA I G T Y ++K R I++D S++ L ++S+ TEDTA YYCA+
Sbjct: 65 ECLACITG-GGNTAYNPALKSRLNITKDKSKSQVSLSLSSVTTEDTATYYCAKYSTDDCA 123
Query: 434 YSGHFDAMDLWGPGXXXXXXXXXXTSPKIFPLTLGSSEPAGYVVIACLVRDFFPSEPLTV 613
S + +D WG G TSP IFPL+LG+++PAG VVI CLV+ FFPS PL+V
Sbjct: 124 CSSERNYIDAWGQGLLVTVSSESETSPSIFPLSLGNNDPAGQVVIGCLVQGFFPSAPLSV 183
Query: 614 TWSPSREGVIVRNFPPAQAGGLYTMSSQLTLPVEQCPADQILKCQVQHLSKSSQSVNV-- 787
TW+ + + V VRNFP AG LYTMSSQLTLP CP Q + CQVQHLSK+S++V V
Sbjct: 184 TWNQNGDSVSVRNFPAVLAGSLYTMSSQLTLPASLCPKGQSVTCQVQHLSKASKTVAVPC 243
Query: 788 ---XXXXXXXXXXXXSLSLQPPALADLLLGSNASLTCTLSGLKKSEGVSFTWQPQVGRMA 958
SLS+QPPAL DLLLGSNASLTCTLSGLK +EG SFTW P G+ A
Sbjct: 244 IIQDSSSCCVPNCEPSLSVQPPALEDLLLGSNASLTCTLSGLKSAEGASFTWNPTGGKTA 303
Query: 959 SRRPPR 976
+ P+
Sbjct: 304 VQGSPK 309
Score = 65.9 bits (159), Expect = 6e-11
Identities = 27/40 (67%), Positives = 31/40 (77%)
Frame = +1
Query: 940 SGGKDGVQASPTRDSCGCYNVFSILPALADPWNKERTFSC 1059
+GGK VQ SP RDSCGCY+V S+LP ADPWN +TFSC
Sbjct: 298 TGGKTAVQGSPKRDSCGCYSVSSVLPGCADPWNSGQTFSC 337
>ref|XP_002696848.1| PREDICTED: IgM [Bos taurus].
Length = 259
Score = 105 bits (263), Expect = 5e-23
Identities = 54/113 (47%), Positives = 76/113 (67%), Gaps = 2/113 (1%)
Frame = +2
Query: 86 WVVLFALL--QGVQGEEKLVDSGGGLVQPGGSLRLSCVGSGFLFSSYNMIWVRQAPGKGL 259
W +LF L +GV + +L +SG LV+P +L L+C SGF SS + WVRQAPGK L
Sbjct: 5 WTLLFVLSAPRGVLSQVQLRESGPSLVKPSQTLSLTCTVSGFSLSSNGVGWVRQAPGKAL 64
Query: 260 EWLAGIDERGSETYYADSVKGRFTISRDNSQNTAYLRMNSLRTEDTARYYCAR 418
EW+ GID G +TYY ++K R +I++DNS++ L ++S+ EDTA YYCA+
Sbjct: 65 EWVGGIDNDG-DTYYNPALKSRLSITKDNSKSQVSLSVSSVTPEDTATYYCAK 116
>ref|XP_002696847.1| PREDICTED: IgM [Bos taurus].
Length = 193
Score = 103 bits (257), Expect = 3e-22
Identities = 56/121 (46%), Positives = 77/121 (63%), Gaps = 2/121 (1%)
Frame = +2
Query: 86 WVVLFALL--QGVQGEEKLVDSGGGLVQPGGSLRLSCVGSGFLFSSYNMIWVRQAPGKGL 259
W +LF L +GV + +L +SG LV+P +L L+C SGF S ++ WVRQAPGK L
Sbjct: 5 WTLLFVLSAPRGVLSQVQLRESGPSLVKPSQTLSLTCTVSGFSLSDNSVGWVRQAPGKAL 64
Query: 260 EWLAGIDERGSETYYADSVKGRFTISRDNSQNTAYLRMNSLRTEDTARYYCARCYVGGYS 439
EWL G+ G T Y ++K R +I++DNS++ L ++S+ TEDTA YYCAR V G
Sbjct: 65 EWL-GVIYSGGSTGYNPALKSRLSITKDNSKSQVSLSLSSVTTEDTATYYCARDTVRGSE 123
Query: 440 G 442
G
Sbjct: 124 G 124
>ref|XP_002684044.1| PREDICTED: Ig heavy chain-like, partial [Bos taurus].
Length = 121
Score = 103 bits (257), Expect = 3e-22
Identities = 56/118 (47%), Positives = 77/118 (65%), Gaps = 2/118 (1%)
Frame = +2
Query: 86 WVVLFALL--QGVQGEEKLVDSGGGLVQPGGSLRLSCVGSGFLFSSYNMIWVRQAPGKGL 259
W +LF L +GV + +L +SG LV+P +L L+C SGF SSY + WVRQAPGK L
Sbjct: 5 WTLLFVLSAPRGVLSQVQLRESGPSLVKPSQTLSLTCTISGFSLSSYAVGWVRQAPGKAL 64
Query: 260 EWLAGIDERGSETYYADSVKGRFTISRDNSQNTAYLRMNSLRTEDTARYYCARCYVGG 433
EW+ GI GS T ++K R +I++DNS++ L ++S+ TEDTA YYCA+ V G
Sbjct: 65 EWVGGISSGGS-TCLNPALKSRLSITKDNSKSQVSLSVSSVTTEDTATYYCAKDTVRG 121
>ref|XP_002683686.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 226
Score = 85.1 bits (209), Expect = 1e-16
Identities = 48/115 (41%), Positives = 71/115 (61%), Gaps = 4/115 (3%)
Frame = +2
Query: 86 WVVLFALLQGVQG---EEKLVDSGGGLVQPGGSLRLSCVGSGF-LFSSYNMIWVRQAPGK 253
W +L L+ G QG + +L +SG L++ +L L+C GSG+ + S Y W+RQAPGK
Sbjct: 4 WGLLLCLVTGPQGVLSQVQLQESGPELIKSSQTLSLTCAGSGYSITSDYGRNWIRQAPGK 63
Query: 254 GLEWLAGIDERGSETYYADSVKGRFTISRDNSQNTAYLRMNSLRTEDTARYYCAR 418
GLE + + G +TYY+ S+K +I RD +N L+++S+ TEDTA Y AR
Sbjct: 64 GLEQMGCMYYNG-DTYYSPSIKSHTSICRDTPKNQFSLQLSSVPTEDTAMCYLAR 117
>ref|NP_001077269.1| immunoglobulin lambda-like polypeptide 1 [Bos taurus].
Length = 235
Score = 70.1 bits (170), Expect = 3e-12
Identities = 64/228 (28%), Positives = 94/228 (41%), Gaps = 5/228 (2%)
Frame = +2
Query: 89 VVLFALLQGVQGEEKLVDSGGGLVQPGGSLRLSCVGSGFLFSSYNMIWVRQAPGKGLEWL 268
+ L AL G + L G + ++C GS Y + W +Q PG GL+ +
Sbjct: 8 LTLVALCTGSWAQAVLTQPSSVSGSLGQRVSITCSGSSTNIGIYGVNWYQQVPGSGLKTI 67
Query: 269 AGIDERGSETYYADSVKGRFTISRDNSQNTAYLRMNSLRTEDTARYYCARCYVGGYSGHF 448
D+ Y V RF+ S+ S NTA L +NSL+ ED A Y+CA G YS +
Sbjct: 68 IYEDK-----YRPSGVPDRFSGSK--SGNTATLTINSLQAEDEADYFCA---AGDYSVN- 116
Query: 449 DAMDLWGPGXXXXXXXXXXTSPKIFPLTLGSSEPAG-YVVIACLVRDFFPSEPLTVTWSP 625
++G G + P + + E G + CL+ DF+P +TV W
Sbjct: 117 --TAVFGGGTTLTVLGQPKSPPSVTLFPPSTEELNGNKATLVCLISDFYPGS-VTVVWK- 172
Query: 626 SREGVIVRNFPPA----QAGGLYTMSSQLTLPVEQCPADQILKCQVQH 757
+ I RN Q+ Y SS L+L + C+V H
Sbjct: 173 ADGSTITRNVETTRASKQSNSKYAASSYLSLTSSDWKSKGSYSCEVTH 220
>ref|XP_002694682.1| PREDICTED: hCG96018-like [Bos taurus].
Length = 150
Score = 57.0 bits (136), Expect = 3e-08
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = +2
Query: 167 GGSLRLSC-VGSGFLFSSYNMIWVRQAPGKGLEWLAGIDERGSETYYADSVKGRFTISRD 343
G S RLSC + SG+ S+Y++ W +Q G L +L + S+ + V RF+ S+D
Sbjct: 34 GASARLSCTLSSGYNVSNYSIYWYQQKAGNPLRYLLRF-KSDSDKHQGSGVPSRFSGSKD 92
Query: 344 NSQNTAYLRMNSLRTEDTARYYCA 415
S N L ++ L+ ED A YYCA
Sbjct: 93 ASTNAGLLLISGLQPEDEADYYCA 116
>ref|XP_002701782.1| PREDICTED: immunoglobulin lambda-like polypeptide 1-like [Bos
taurus].
Length = 236
Score = 56.2 bits (134), Expect = 5e-08
Identities = 57/226 (25%), Positives = 84/226 (37%), Gaps = 5/226 (2%)
Frame = +2
Query: 95 LFALLQGVQGEEKLVDSGGGLVQPGGSLRLSCVGSGFLFSSYNMIWVRQAPGKGLEWLAG 274
L L G +L V G + ++C G S + W +Q PG+ +
Sbjct: 10 LLTLCTGHLASSQLTQPPAVSVSLGQTASITCQGDDLELLSAH--WYQQKPGQAPVLVIY 67
Query: 275 IDERGSETYYADSVKGRFTISRDNSQNTAYLRMNSLRTEDTARYYCARCYVGGYSGHFDA 454
D+ A + RF+ S+ S TA L + + ED A YYC + SG
Sbjct: 68 ADDN-----LASGIPDRFSGSK--SDTTATLTIRGAQAEDEADYYCQSADI---SGPVSL 117
Query: 455 MDLWGPGXXXXXXXXXXTSPKIFPLTLGSSE-PAGYVVIACLVRDFFPSEPLTVTWSPSR 631
DL+G G + P + E A + CL+ DF+P +TV W +
Sbjct: 118 CDLFGGGTRVTVLGQPKSPPSVTLFPPSKEELSANKATLVCLISDFYPGS-VTVAWK-AD 175
Query: 632 EGVIVRNFPPA----QAGGLYTMSSQLTLPVEQCPADQILKCQVQH 757
I RN Q+ Y SS L+L + C+V H
Sbjct: 176 GSTITRNVKTTRASKQSNSKYAASSYLSLTDSDWKSKGSYSCEVTH 221
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 50,429,530
Number of extensions: 1673836
Number of successful extensions: 8752
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 8577
Number of HSP's successfully gapped: 9
Length of query: 354
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 251
Effective length of database: 14,273,310
Effective search space: 3582600810
Effective search space used: 3582600810
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001576
(1064 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848935.1| PREDICTED: similar to Ig heavy chain V-III regi... 184 1e-46
Alignment gi|XP_848877.1| PREDICTED: similar to Ig heavy chain V-III regi... 184 1e-46
Alignment gi|XP_848501.1| PREDICTED: similar to Ig heavy chain V-III regi... 183 2e-46
Alignment gi|XP_848616.1| PREDICTED: similar to Ig heavy chain V-III regi... 182 4e-46
Alignment gi|XP_848432.1| PREDICTED: similar to Ig heavy chain V-III regi... 181 1e-45
Alignment gi|XP_849253.1| PREDICTED: similar to Ig heavy chain V-III regi... 181 1e-45
Alignment gi|XP_848486.1| PREDICTED: similar to Ig heavy chain V-III regi... 180 2e-45
Alignment gi|XP_849385.1| PREDICTED: similar to Ig heavy chain V-III regi... 179 5e-45
Alignment gi|XP_848321.1| PREDICTED: similar to Ig heavy chain V-III regi... 179 5e-45
Alignment gi|XP_849242.1| PREDICTED: similar to Ig heavy chain V-III regi... 176 3e-44
>ref|XP_848935.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 315
Score = 184 bits (467), Expect = 1e-46
Identities = 89/128 (69%), Positives = 102/128 (79%)
Frame = +2
Query: 35 SVIRKEHRPPAMEFRLNWVVLFALLQGVQGEEKLVDSGGGLVQPGGSLRLSCVGSGFLFS 214
SVIR +HR ME L WV L A+LQGVQGE +LV+SGG L +PGGSLRLSCV SG FS
Sbjct: 156 SVIRTQHRQITMESVLGWVFLVAILQGVQGEVQLVESGGDLAKPGGSLRLSCVASGLTFS 215
Query: 215 SYNMIWVRQAPGKGLEWLAGIDERGSETYYADSVKGRFTISRDNSQNTAYLRMNSLRTED 394
SY+M WVRQAPGKGL+W+ I GS TYY D+VKGRFTISRDN++NT YL+MNSLR ED
Sbjct: 216 SYSMSWVRQAPGKGLQWVTAISYDGSSTYYTDAVKGRFTISRDNARNTVYLQMNSLRAED 275
Query: 395 TARYYCAR 418
TA YYCA+
Sbjct: 276 TAVYYCAQ 283
>ref|XP_848877.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 250
Score = 184 bits (467), Expect = 1e-46
Identities = 88/127 (69%), Positives = 104/127 (81%)
Frame = +2
Query: 38 VIRKEHRPPAMEFRLNWVVLFALLQGVQGEEKLVDSGGGLVQPGGSLRLSCVGSGFLFSS 217
+IR + R ME L+WV L A+LQGVQGE +LV+SGG LV+PGGSLRLSCV SGF FS+
Sbjct: 108 LIRTQQRQTTMESVLSWVFLVAILQGVQGEVQLVESGGDLVKPGGSLRLSCVASGFTFSN 167
Query: 218 YNMIWVRQAPGKGLEWLAGIDERGSETYYADSVKGRFTISRDNSQNTAYLRMNSLRTEDT 397
Y+M WVRQAPGKGL+W+A I GS TYY D+VKGRFTISRDN++NT YL+MNSLR EDT
Sbjct: 168 YDMSWVRQAPGKGLQWVAAISYDGSSTYYTDAVKGRFTISRDNARNTVYLQMNSLRAEDT 227
Query: 398 ARYYCAR 418
A YYCA+
Sbjct: 228 AVYYCAK 234
Score = 131 bits (329), Expect = 1e-30
Identities = 62/91 (68%), Positives = 70/91 (76%)
Frame = +2
Query: 146 GGGLVQPGGSLRLSCVGSGFLFSSYNMIWVRQAPGKGLEWLAGIDERGSETYYADSVKGR 325
G LV+PGGSLRLSCV SGF FS Y M WV QAPGKGL+W+A I GS TYY D+VKGR
Sbjct: 10 GEDLVKPGGSLRLSCVTSGFTFSRYAMSWVGQAPGKGLQWVAAISSSGSSTYYVDAVKGR 69
Query: 326 FTISRDNSQNTAYLRMNSLRTEDTARYYCAR 418
FTIS DN++N YL+MNSLR ED A YYC +
Sbjct: 70 FTISIDNAKNMVYLQMNSLRAEDIAVYYCGK 100
>ref|XP_848501.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 162
Score = 183 bits (465), Expect = 2e-46
Identities = 90/126 (71%), Positives = 104/126 (82%)
Frame = +2
Query: 41 IRKEHRPPAMEFRLNWVVLFALLQGVQGEEKLVDSGGGLVQPGGSLRLSCVGSGFLFSSY 220
IR E+R M+ L WV L A+L+GVQGE +LV+SGG LV+PGGSLRLSCV SGF FSSY
Sbjct: 4 IRTEYRQLTMKLVLGWVFLVAILKGVQGEVQLVESGGDLVKPGGSLRLSCVASGFTFSSY 63
Query: 221 NMIWVRQAPGKGLEWLAGIDERGSETYYADSVKGRFTISRDNSQNTAYLRMNSLRTEDTA 400
NM WVRQAPGKGL+W+A I + GS T YAD+VKGRFTISRDN++NT YL+MNSLR EDTA
Sbjct: 64 NMGWVRQAPGKGLQWVAWIYDSGSSTSYADAVKGRFTISRDNAKNTLYLQMNSLRAEDTA 123
Query: 401 RYYCAR 418
YYCAR
Sbjct: 124 VYYCAR 129
>ref|XP_848616.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 186
Score = 182 bits (463), Expect = 4e-46
Identities = 91/134 (67%), Positives = 105/134 (78%)
Frame = +2
Query: 38 VIRKEHRPPAMEFRLNWVVLFALLQGVQGEEKLVDSGGGLVQPGGSLRLSCVGSGFLFSS 217
VIR +HR ME L+WV L A+LQGVQGE +LV+SGG LV+P GSLRLSCV SGF FSS
Sbjct: 22 VIRTQHRQITMESVLSWVFLVAILQGVQGEVQLVESGGDLVKPAGSLRLSCVASGFTFSS 81
Query: 218 YNMIWVRQAPGKGLEWLAGIDERGSETYYADSVKGRFTISRDNSQNTAYLRMNSLRTEDT 397
Y+M WVRQAP KGL+ +AGI+ GS TYY D+VKGRFTISRDN++NT YL+MNSLR EDT
Sbjct: 82 YSMSWVRQAPEKGLQLVAGINSGGSSTYYTDAVKGRFTISRDNAKNTVYLQMNSLRAEDT 141
Query: 398 ARYYCARCYVGGYS 439
A YYCA G S
Sbjct: 142 AMYYCAEAGSGQVS 155
>ref|XP_848432.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 267
Score = 181 bits (459), Expect = 1e-45
Identities = 87/123 (70%), Positives = 102/123 (82%)
Frame = +2
Query: 50 EHRPPAMEFRLNWVVLFALLQGVQGEEKLVDSGGGLVQPGGSLRLSCVGSGFLFSSYNMI 229
EHR ME L+WV L +L+GVQGE +LV+SGG LV+PGGSLRLSCV SGF FSSY+M
Sbjct: 104 EHRQRTMESALSWVFLVTILKGVQGEVQLVESGGDLVKPGGSLRLSCVASGFTFSSYHMS 163
Query: 230 WVRQAPGKGLEWLAGIDERGSETYYADSVKGRFTISRDNSQNTAYLRMNSLRTEDTARYY 409
WVRQAPGKGL+W+A I+ GS T YAD+VKGRFTISRDN++NT YL+MNSLR EDTA YY
Sbjct: 164 WVRQAPGKGLQWVAYINSGGSSTSYADAVKGRFTISRDNAKNTLYLQMNSLRAEDTAVYY 223
Query: 410 CAR 418
CA+
Sbjct: 224 CAK 226
>ref|XP_849253.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 142
Score = 181 bits (458), Expect = 1e-45
Identities = 93/139 (66%), Positives = 109/139 (78%), Gaps = 3/139 (2%)
Frame = +2
Query: 35 SVIRKEHRPPAMEFRLNWVVLFALLQGVQGEEKLVDSGGGLVQPGGSLRLSCVGSGFLFS 214
S IR E+R ME + WV L A+L+GVQGE +LV+SGG LV+PGGSLRLSCV SGF FS
Sbjct: 3 SGIRVENRRLNMESFVGWVFLVAILKGVQGEVQLVESGGDLVKPGGSLRLSCVASGFTFS 62
Query: 215 SYNMIWVRQAPGKGLEWLAGIDERGSETYYADSVKGRFTISRDNSQNTAYLRMNSLRTED 394
SY M WVRQAPGKGL+W+A I+ GS TYYAD+VKGRFTISRDN++NT YL+MNSLR+ED
Sbjct: 63 SYAMSWVRQAPGKGLQWVAYINSGGSSTYYADAVKGRFTISRDNARNTLYLQMNSLRSED 122
Query: 395 TARYYCARCYV---GGYSG 442
TA YYC + V G Y G
Sbjct: 123 TAVYYCPKDTVFSPGSYLG 141
>ref|XP_848486.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 239
Score = 180 bits (456), Expect = 2e-45
Identities = 89/128 (69%), Positives = 104/128 (81%)
Frame = +2
Query: 35 SVIRKEHRPPAMEFRLNWVVLFALLQGVQGEEKLVDSGGGLVQPGGSLRLSCVGSGFLFS 214
S I EHR M L+WV L A+++GVQGE +LV+SGG LV+PGGSLRLSCV SGF FS
Sbjct: 57 SGIWTEHRQLTMTSVLSWVFLAAIVKGVQGEVQLVESGGDLVKPGGSLRLSCVASGFTFS 116
Query: 215 SYNMIWVRQAPGKGLEWLAGIDERGSETYYADSVKGRFTISRDNSQNTAYLRMNSLRTED 394
+Y M WVRQAPGKGLEW+A I E GS TYYA++VKGRFTISRDN++N AYL+MNSLR ED
Sbjct: 117 NYEMYWVRQAPGKGLEWVARIYESGSTTYYAEAVKGRFTISRDNAKNMAYLQMNSLRAED 176
Query: 395 TARYYCAR 418
TA YYCA+
Sbjct: 177 TAVYYCAQ 184
>ref|XP_849385.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 174
Score = 179 bits (453), Expect = 5e-45
Identities = 87/127 (68%), Positives = 102/127 (80%)
Frame = +2
Query: 35 SVIRKEHRPPAMEFRLNWVVLFALLQGVQGEEKLVDSGGGLVQPGGSLRLSCVGSGFLFS 214
+V+R +HR ME L WV L A+L+GVQGE +LV+SGG LV+PGGSLRLSCV SGF FS
Sbjct: 14 AVLRTQHRQLTMESVLFWVFLVAILKGVQGEVQLVESGGNLVKPGGSLRLSCVASGFTFS 73
Query: 215 SYNMIWVRQAPGKGLEWLAGIDERGSETYYADSVKGRFTISRDNSQNTAYLRMNSLRTED 394
SY M WVRQAPGK L+W+AGI GS TYY +VKGRFTISRDN++NT YL+MNSLR ED
Sbjct: 74 SYYMDWVRQAPGKRLQWVAGISSDGSSTYYPQAVKGRFTISRDNAKNTLYLQMNSLRAED 133
Query: 395 TARYYCA 415
+A YYCA
Sbjct: 134 SAVYYCA 140
>ref|XP_848321.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 296
Score = 179 bits (453), Expect = 5e-45
Identities = 88/131 (67%), Positives = 105/131 (80%)
Frame = +2
Query: 41 IRKEHRPPAMEFRLNWVVLFALLQGVQGEEKLVDSGGGLVQPGGSLRLSCVGSGFLFSSY 220
IR E+R ME L+WV L A L+GVQGE +LV+SGG +V+PGGSLRLSCV SGF FSSY
Sbjct: 138 IRTEYRQLTMESVLSWVFLVATLKGVQGEVQLVESGGDMVKPGGSLRLSCVASGFTFSSY 197
Query: 221 NMIWVRQAPGKGLEWLAGIDERGSETYYADSVKGRFTISRDNSQNTAYLRMNSLRTEDTA 400
M W RQAPGKGL+W++ I++ GS T YAD+VKGRFTISRDN++NT YL+MNSLR EDTA
Sbjct: 198 YMYWARQAPGKGLQWVSHINKDGSSTSYADAVKGRFTISRDNAKNTLYLQMNSLRAEDTA 257
Query: 401 RYYCARCYVGG 433
YYCA+ V G
Sbjct: 258 VYYCAKDTVRG 268
>ref|XP_849242.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 121
Score = 176 bits (447), Expect = 3e-44
Identities = 85/117 (72%), Positives = 97/117 (82%)
Frame = +2
Query: 68 MEFRLNWVVLFALLQGVQGEEKLVDSGGGLVQPGGSLRLSCVGSGFLFSSYNMIWVRQAP 247
ME WV L A+L+GVQGE +LV+SGG LV+PGGSLRLSCV SGF FSSY M WVRQAP
Sbjct: 1 MESVFCWVFLVAILKGVQGEVQLVESGGDLVKPGGSLRLSCVASGFTFSSYYMYWVRQAP 60
Query: 248 GKGLEWLAGIDERGSETYYADSVKGRFTISRDNSQNTAYLRMNSLRTEDTARYYCAR 418
GKGL+W+A I GS TYYAD+VKGRFTISRDN++NT YL+MNSLR EDTA YYCA+
Sbjct: 61 GKGLQWVARISSDGSSTYYADAVKGRFTISRDNAKNTLYLQMNSLRAEDTAMYYCAK 117
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 52,556,466
Number of extensions: 1719864
Number of successful extensions: 9185
Number of sequences better than 1.0e-05: 118
Number of HSP's gapped: 8959
Number of HSP's successfully gapped: 128
Length of query: 354
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 250
Effective length of database: 15,407,560
Effective search space: 3851890000
Effective search space used: 3851890000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001576
(1064 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003403879.1| PREDICTED: ig heavy chain V-III region VH26-... 176 2e-44
Alignment gi|XP_003403513.1| PREDICTED: ig heavy chain V-III region VH26-... 175 6e-44
Alignment gi|XP_003403902.1| PREDICTED: ig heavy chain V-III region VH26-... 174 1e-43
Alignment gi|XP_003403714.1| PREDICTED: hypothetical protein LOC100653084... 174 2e-43
Alignment gi|XP_001718089.4| PREDICTED: hypothetical protein LOC100132941... 173 2e-43
Alignment gi|XP_002346315.2| PREDICTED: ig heavy chain V-III region VH26-... 173 2e-43
Alignment gi|XP_003403901.1| PREDICTED: ig heavy chain V-III region VH26-... 171 1e-42
Alignment gi|XP_003120167.2| PREDICTED: hypothetical protein LOC100291917... 166 4e-41
Alignment gi|XP_003119639.1| PREDICTED: hypothetical protein LOC100508797... 165 7e-41
Alignment gi|XP_001718156.4| PREDICTED: ig heavy chain V-III region VH26-... 157 1e-38
>ref|XP_003403879.1| PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].
Length = 173
Score = 176 bits (447), Expect = 2e-44
Identities = 89/122 (72%), Positives = 98/122 (80%)
Frame = +2
Query: 68 MEFRLNWVVLFALLQGVQGEEKLVDSGGGLVQPGGSLRLSCVGSGFLFSSYNMIWVRQAP 247
MEF L+WV L ALL+GVQ + +LV+SGGG+VQPG SLRLSC SGF FSSY M WVRQAP
Sbjct: 1 MEFGLSWVFLVALLRGVQCQVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAP 60
Query: 248 GKGLEWLAGIDERGSETYYADSVKGRFTISRDNSQNTAYLRMNSLRTEDTARYYCARCYV 427
GKGLEW+A I GS YYADSVKGRFTISRDNS+NT YL+MNSLR DTA YYCAR V
Sbjct: 61 GKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAGDTAVYYCARDTV 120
Query: 428 GG 433
G
Sbjct: 121 RG 122
>ref|XP_003403513.1| PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].
Length = 147
Score = 175 bits (444), Expect = 6e-44
Identities = 89/122 (72%), Positives = 99/122 (81%)
Frame = +2
Query: 68 MEFRLNWVVLFALLQGVQGEEKLVDSGGGLVQPGGSLRLSCVGSGFLFSSYNMIWVRQAP 247
MEF L+WV L A+L+GVQ E +LV SGGGLVQPGGSLRLSC GSGF FSSY M WVRQAP
Sbjct: 1 MEFVLSWVFLVAILKGVQCEVQLVQSGGGLVQPGGSLRLSCAGSGFTFSSYAMHWVRQAP 60
Query: 248 GKGLEWLAGIDERGSETYYADSVKGRFTISRDNSQNTAYLRMNSLRTEDTARYYCARCYV 427
GKGLEW++ I G TYYADSVKGRFTISRDN++N+ YL+MNSLR ED A YYCAR V
Sbjct: 61 GKGLEWVSAIG-TGGGTYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDMAVYYCARDTV 119
Query: 428 GG 433
G
Sbjct: 120 RG 121
>ref|XP_003403902.1| PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].
Length = 231
Score = 174 bits (441), Expect = 1e-43
Identities = 86/122 (70%), Positives = 99/122 (81%)
Frame = +2
Query: 68 MEFRLNWVVLFALLQGVQGEEKLVDSGGGLVQPGGSLRLSCVGSGFLFSSYNMIWVRQAP 247
MEF L+WV+L A+L+ VQ E +LV+SGGGLVQPGGSLRLSC SGF FSSY M WVRQAP
Sbjct: 1 MEFWLSWVLLVAILKDVQCEVQLVESGGGLVQPGGSLRLSCSASGFTFSSYAMHWVRQAP 60
Query: 248 GKGLEWLAGIDERGSETYYADSVKGRFTISRDNSQNTAYLRMNSLRTEDTARYYCARCYV 427
GKGLE+++ I G TYYADSVKGRFTISRDNS+NT YL+M+SLR EDTA YYC + V
Sbjct: 61 GKGLEYVSAISSNGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLRAEDTAVYYCVKDTV 120
Query: 428 GG 433
G
Sbjct: 121 RG 122
>ref|XP_003403714.1| PREDICTED: hypothetical protein LOC100653084 [Homo sapiens].
Length = 279
Score = 174 bits (440), Expect = 2e-43
Identities = 90/142 (63%), Positives = 103/142 (72%), Gaps = 9/142 (6%)
Frame = +2
Query: 68 MEFRLNWVVLFALLQGVQGEEKLVDSGGGLVQPGGSLRLSCVGSGFLFSSYNMIWVRQAP 247
MEF L+WV L A+L+GVQ E +LV+SGG +VQPGGSLRLSC SGF F Y M WVRQAP
Sbjct: 1 MEFGLSWVFLVAILKGVQCEVQLVESGGVVVQPGGSLRLSCAASGFTFDDYAMHWVRQAP 60
Query: 248 GKGLEWLAGIDERGSETYYADSVKGRFTISRDNSQNTAYLRMNSLRTEDTARYYCAR--- 418
GKGLEW++ I G TYYADSVKGRFTISRDNS+N+ YL+MNSLR EDTA YYCA+
Sbjct: 61 GKGLEWVSLISWDGGSTYYADSVKGRFTISRDNSKNSLYLQMNSLRAEDTALYYCAKDTH 120
Query: 419 -----CYVG-GYSGHFDAMDLW 466
+ G GYS F D W
Sbjct: 121 ENPGESWQGEGYSSGFTFSDFW 142
Score = 84.7 bits (208), Expect = 1e-16
Identities = 45/84 (53%), Positives = 58/84 (69%), Gaps = 2/84 (2%)
Frame = +2
Query: 164 PGGSLRLSCVGSGFLFSSYNMIWVRQAPGKGLEWLAGIDERGSE--TYYADSVKGRFTIS 337
PG S + SGF FS + M W+RQA GKGLEW+ I + + T A SVKGRFTIS
Sbjct: 123 PGESWQGEGYSSGFTFSDFWMHWIRQASGKGLEWVGRIRTKRNSYTTECAASVKGRFTIS 182
Query: 338 RDNSQNTAYLRMNSLRTEDTARYY 409
RD+S+NT Y++MN+L+T+ TA YY
Sbjct: 183 RDDSKNTLYMQMNTLKTKYTAIYY 206
Score = 50.4 bits (119), Expect = 3e-06
Identities = 24/55 (43%), Positives = 32/55 (58%)
Frame = +2
Query: 242 APGKGLEWLAGIDERGSETYYADSVKGRFTISRDNSQNTAYLRMNSLRTEDTARY 406
+PG+GLEW+ I Y GRF S D S + AYL+++SL+ EDTA Y
Sbjct: 207 SPGQGLEWMGWIITYTGNPMYTHGFTGRFVFSMDTSVSMAYLQISSLKAEDTAVY 261
>ref|XP_001718089.4| PREDICTED: hypothetical protein LOC100132941 [Homo sapiens].
Length = 297
Score = 173 bits (439), Expect = 2e-43
Identities = 88/122 (72%), Positives = 98/122 (80%)
Frame = +2
Query: 68 MEFRLNWVVLFALLQGVQGEEKLVDSGGGLVQPGGSLRLSCVGSGFLFSSYNMIWVRQAP 247
MEF L+WV L A+L+GVQ E +LV SGGGLV PGGSLRLSC GSGF FSSY M WVRQAP
Sbjct: 1 MEFVLSWVFLVAILKGVQCEVQLVQSGGGLVHPGGSLRLSCAGSGFTFSSYAMHWVRQAP 60
Query: 248 GKGLEWLAGIDERGSETYYADSVKGRFTISRDNSQNTAYLRMNSLRTEDTARYYCARCYV 427
GKGLEW++ I G TYYADSVKGRFTISRDN++N+ YL+MNSLR ED A YYCAR V
Sbjct: 61 GKGLEWVSAIG-TGGGTYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDMAVYYCARDTV 119
Query: 428 GG 433
G
Sbjct: 120 RG 121
>ref|XP_002346315.2| PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].
Length = 147
Score = 173 bits (439), Expect = 2e-43
Identities = 88/122 (72%), Positives = 98/122 (80%)
Frame = +2
Query: 68 MEFRLNWVVLFALLQGVQGEEKLVDSGGGLVQPGGSLRLSCVGSGFLFSSYNMIWVRQAP 247
MEF L+WV L A+L+GVQ E +LV SGGGLV PGGSLRLSC GSGF FSSY M WVRQAP
Sbjct: 1 MEFVLSWVFLVAILKGVQCEVQLVQSGGGLVHPGGSLRLSCAGSGFTFSSYAMHWVRQAP 60
Query: 248 GKGLEWLAGIDERGSETYYADSVKGRFTISRDNSQNTAYLRMNSLRTEDTARYYCARCYV 427
GKGLEW++ I G TYYADSVKGRFTISRDN++N+ YL+MNSLR ED A YYCAR V
Sbjct: 61 GKGLEWVSAIG-TGGGTYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDMAVYYCARDTV 119
Query: 428 GG 433
G
Sbjct: 120 RG 121
>ref|XP_003403901.1| PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].
Length = 186
Score = 171 bits (433), Expect = 1e-42
Identities = 83/122 (68%), Positives = 98/122 (80%)
Frame = +2
Query: 68 MEFRLNWVVLFALLQGVQGEEKLVDSGGGLVQPGGSLRLSCVGSGFLFSSYNMIWVRQAP 247
MEF L+WV L A+++GVQ + +LV+SGGGLV+PGGSLRLSC SGF FS Y M W+RQAP
Sbjct: 1 MEFGLSWVFLVAIIKGVQCQVQLVESGGGLVKPGGSLRLSCAASGFTFSDYYMSWIRQAP 60
Query: 248 GKGLEWLAGIDERGSETYYADSVKGRFTISRDNSQNTAYLRMNSLRTEDTARYYCARCYV 427
GKGLEW++ I S T YADSVKGRFTISRDN++N+ YL+MNSLR EDTA YYCAR V
Sbjct: 61 GKGLEWVSYISSSSSYTNYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCARDTV 120
Query: 428 GG 433
G
Sbjct: 121 RG 122
>ref|XP_003120167.2| PREDICTED: hypothetical protein LOC100291917 [Homo sapiens].
Length = 295
Score = 166 bits (419), Expect = 4e-41
Identities = 82/126 (65%), Positives = 97/126 (76%)
Frame = +2
Query: 41 IRKEHRPPAMEFRLNWVVLFALLQGVQGEEKLVDSGGGLVQPGGSLRLSCVGSGFLFSSY 220
+ K + E L+W+ L A+L+GVQ E +LV+SGGGLV+PGGSLRLSC SGF FS Y
Sbjct: 13 LHKSEKRTTKESWLSWLFLVAILKGVQCEVQLVESGGGLVKPGGSLRLSCAASGFTFSDY 72
Query: 221 NMIWVRQAPGKGLEWLAGIDERGSETYYADSVKGRFTISRDNSQNTAYLRMNSLRTEDTA 400
M WVRQAPGKGLEW++ I S YYADSVKGRFTISRDN++N+ YL+MNSLR EDTA
Sbjct: 73 YMNWVRQAPGKGLEWVSSISS-SSTIYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTA 131
Query: 401 RYYCAR 418
YYCAR
Sbjct: 132 VYYCAR 137
Score = 87.0 bits (214), Expect = 3e-17
Identities = 48/103 (46%), Positives = 63/103 (61%), Gaps = 2/103 (1%)
Frame = +2
Query: 116 VQGEEKLVDSGGGLVQPGGSLRLSCVGSGFLFSSYNM--IWVRQAPGKGLEWLAGIDERG 289
V + L +SG LV+P +L L+C SGF S+ M W+RQ PGK LEWLA ID
Sbjct: 164 VLSQVTLKESGPALVKPTQTLTLTCTFSGFSLSTSGMRVSWIRQPPGKALEWLARIDW-D 222
Query: 290 SETYYADSVKGRFTISRDNSQNTAYLRMNSLRTEDTARYYCAR 418
+ +Y+ S+K R TIS+D S+N L M ++ DTA YYCAR
Sbjct: 223 DDKFYSTSLKTRLTISKDTSKNQVVLTMTNMDPVDTATYYCAR 265
>ref|XP_003119639.1| PREDICTED: hypothetical protein LOC100508797 [Homo sapiens].
Length = 309
Score = 165 bits (417), Expect = 7e-41
Identities = 89/145 (61%), Positives = 105/145 (72%), Gaps = 4/145 (2%)
Frame = +2
Query: 11 RSPAPGS----RSVIRKEHRPPAMEFRLNWVVLFALLQGVQGEEKLVDSGGGLVQPGGSL 178
RSP+ G SVIR EH EF L+WV L A+L+ VQ E++LV+SGGGLVQPGGSL
Sbjct: 108 RSPSLGIPKCLHSVIRTEHTGLTREFVLSWVFLVAILKCVQCEDQLVESGGGLVQPGGSL 167
Query: 179 RLSCVGSGFLFSSYNMIWVRQAPGKGLEWLAGIDERGSETYYADSVKGRFTISRDNSQNT 358
R SC SGF FSSY + WVR+APGKG EW++ I G +TYYADSV GRFTISRDN++ +
Sbjct: 168 RPSCAASGFAFSSYVLHWVRRAPGKGPEWVSAIG-TGGDTYYADSVMGRFTISRDNAKKS 226
Query: 359 AYLRMNSLRTEDTARYYCARCYVGG 433
YL+MNSL ED A YYCAR V G
Sbjct: 227 LYLQMNSLIAEDMAVYYCARDTVRG 251
>ref|XP_001718156.4| PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].
Length = 148
Score = 157 bits (398), Expect = 1e-38
Identities = 81/126 (64%), Positives = 92/126 (73%)
Frame = +2
Query: 68 MEFRLNWVVLFALLQGVQGEEKLVDSGGGLVQPGGSLRLSCVGSGFLFSSYNMIWVRQAP 247
MEF L+WV L A+LQGV E +LV+SG GL QPGG L+LS SGF S+ M W+ QAP
Sbjct: 1 MEFELSWVFLVAILQGVHCEVQLVESGRGLAQPGGYLKLSGAASGFTVGSWYMSWIHQAP 60
Query: 248 GKGLEWLAGIDERGSETYYADSVKGRFTISRDNSQNTAYLRMNSLRTEDTARYYCARCYV 427
GKGLEW++ I G T YADSVKGRFTIS DNS+NT YL+MNSLR EDTA YYCAR V
Sbjct: 61 GKGLEWVSYISSSGCSTNYADSVKGRFTISTDNSKNTLYLQMNSLRVEDTAVYYCARDTV 120
Query: 428 GGYSGH 445
G GH
Sbjct: 121 RG--GH 124
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 51,474,599
Number of extensions: 1685803
Number of successful extensions: 8606
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 8464
Number of HSP's successfully gapped: 22
Length of query: 354
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 250
Effective length of database: 14,868,908
Effective search space: 3717227000
Effective search space used: 3717227000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001576
(1064 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001472141.2| PREDICTED: hypothetical protein LOC16061 [Mu... 144 3e-43
Alignment gi|XP_001474075.2| PREDICTED: ig alpha chain C region isoform 1... 142 3e-34
Alignment gi|XP_003085513.1| PREDICTED: ig alpha chain C region [Mus musc... 142 3e-34
Alignment gi|XP_001478032.2| PREDICTED: hypothetical protein LOC100047361... 112 6e-25
Alignment gi|XP_923669.1| PREDICTED: putative V-set and immunoglobulin do... 108 9e-24
Alignment gi|XP_003086828.1| PREDICTED: hypothetical protein LOC100505002... 104 1e-22
Alignment gi|XP_003086829.1| PREDICTED: similar to immunoglobulin mu-chai... 103 2e-22
Alignment gi|XP_001474061.2| PREDICTED: hypothetical protein LOC100045292... 97 2e-20
Alignment gi|NP_058679.1| immunoglobulin omega chain precursor [Mus muscu... 49 5e-06
Alignment gi|NP_058678.1| immunoglobulin iota chain precursor [Mus muscul... 49 5e-06
>ref|XP_001472141.2| PREDICTED: hypothetical protein LOC16061 [Mus musculus].
Length = 349
Score = 144 bits (364), Expect(2) = 3e-43
Identities = 77/160 (48%), Positives = 100/160 (62%), Gaps = 7/160 (4%)
Frame = +2
Query: 509 SPKIFPLTLGSSEPAGYVVIACLVRDFFPSEPLTVTWSPSREGVIVRNFPPAQA-GGLYT 685
+P I+PLTL + + V+I CL+ D+FPS + VTW S + + NFPPA A GG YT
Sbjct: 10 NPTIYPLTLPRALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGGYT 69
Query: 686 MSSQLTLPVEQCPADQILKCQVQHLSKSSQSVNVXXXXXXXXXXXX------SLSLQPPA 847
MSSQLTLP +CP + +KC VQH S + Q +NV SLSLQ PA
Sbjct: 70 MSSQLTLPAVECPEGESVKCSVQHDSNAVQELNVKCSGPPPPTTPPPPSCQPSLSLQRPA 129
Query: 848 LADLLLGSNASLTCTLSGLKKSEGVSFTWQPQVGRMASRR 967
L DLLLGS+AS+TCTL+GL+ EG FTW+P G+ A ++
Sbjct: 130 LEDLLLGSDASITCTLNGLRNPEGAVFTWEPSTGKDAVQK 169
Score = 49.7 bits (117), Expect(2) = 3e-43
Identities = 20/40 (50%), Positives = 26/40 (65%)
Frame = +1
Query: 940 SGGKDGVQASPTRDSCGCYNVFSILPALADPWNKERTFSC 1059
S GKD VQ ++SCGCY+V S+LP A+ WN +F C
Sbjct: 161 STGKDAVQKKAVQNSCGCYSVSSVLPGCAERWNSGASFKC 200
>ref|XP_001474075.2| PREDICTED: ig alpha chain C region isoform 1 [Mus musculus].
Length = 354
Score = 142 bits (359), Expect = 3e-34
Identities = 76/160 (47%), Positives = 99/160 (61%), Gaps = 7/160 (4%)
Frame = +2
Query: 509 SPKIFPLTLGSSEPAGYVVIACLVRDFFPSEPLTVTWSPSREGVIVRNFPPAQA-GGLYT 685
+P I+PLTL + + V+I CL+ D+FPS + VTW S + + NFPPA A GG YT
Sbjct: 15 NPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYT 74
Query: 686 MSSQLTLPVEQCPADQILKCQVQHLSKSSQSVNVXXXXXXXXXXXX------SLSLQPPA 847
MSSQLTLP +CP + +KC VQH S Q ++V SLSLQ PA
Sbjct: 75 MSSQLTLPAVECPEGESVKCSVQHDSNPVQELDVNCSGPTPPPPITIPSCQPSLSLQRPA 134
Query: 848 LADLLLGSNASLTCTLSGLKKSEGVSFTWQPQVGRMASRR 967
L DLLLGS+AS+TCTL+GL+ EG FTW+P G+ A ++
Sbjct: 135 LEDLLLGSDASITCTLNGLRNPEGAVFTWEPSTGKDAVQK 174
Score = 50.4 bits (119), Expect = 2e-06
Identities = 31/111 (27%), Positives = 44/111 (39%), Gaps = 20/111 (18%)
Frame = +1
Query: 787 ALQRSMSPVLQAQPVPAATSPCRPAPGLQCQPHVHTQWP--------------------E 906
++Q +PV + + +P P CQP + Q P
Sbjct: 95 SVQHDSNPVQELDVNCSGPTPPPPITIPSCQPSLSLQRPALEDLLLGSDASITCTLNGLR 154
Query: 907 KIRGCQLHLAASGGKDGVQASPTRDSCGCYNVFSILPALADPWNKERTFSC 1059
G S GKD VQ ++SCGCY+V S+LP A+ WN +F C
Sbjct: 155 NPEGAVFTWEPSTGKDAVQKKAVQNSCGCYSVSSVLPGCAERWNSGASFKC 205
>ref|XP_003085513.1| PREDICTED: ig alpha chain C region [Mus musculus].
Length = 413
Score = 142 bits (359), Expect = 3e-34
Identities = 76/160 (47%), Positives = 99/160 (61%), Gaps = 7/160 (4%)
Frame = +2
Query: 509 SPKIFPLTLGSSEPAGYVVIACLVRDFFPSEPLTVTWSPSREGVIVRNFPPAQA-GGLYT 685
+P I+PLTL + + V+I CL+ D+FPS + VTW S + + NFPPA A GG YT
Sbjct: 74 NPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYT 133
Query: 686 MSSQLTLPVEQCPADQILKCQVQHLSKSSQSVNVXXXXXXXXXXXX------SLSLQPPA 847
MSSQLTLP +CP + +KC VQH S Q ++V SLSLQ PA
Sbjct: 134 MSSQLTLPAVECPEGESVKCSVQHDSNPVQELDVNCSGPTPPPPITIPSCQPSLSLQRPA 193
Query: 848 LADLLLGSNASLTCTLSGLKKSEGVSFTWQPQVGRMASRR 967
L DLLLGS+AS+TCTL+GL+ EG FTW+P G+ A ++
Sbjct: 194 LEDLLLGSDASITCTLNGLRNPEGAVFTWEPSTGKDAVQK 233
Score = 100 bits (249), Expect = 2e-21
Identities = 49/78 (62%), Positives = 54/78 (69%)
Frame = +2
Query: 68 MEFRLNWVVLFALLQGVQGEEKLVDSGGGLVQPGGSLRLSCVGSGFLFSSYNMIWVRQAP 247
M+ LNWV L LL G+Q E KLV+SGGGLVQPGGSLRLSC SGF FS + M WVRQ P
Sbjct: 1 MKLWLNWVFLLTLLHGIQCEVKLVESGGGLVQPGGSLRLSCATSGFTFSDFYMEWVRQPP 60
Query: 248 GKGLEWLAGIDERGSETY 301
GK LEW+A R Y
Sbjct: 61 GKRLEWIAAKSARNPTIY 78
Score = 50.4 bits (119), Expect = 2e-06
Identities = 31/111 (27%), Positives = 44/111 (39%), Gaps = 20/111 (18%)
Frame = +1
Query: 787 ALQRSMSPVLQAQPVPAATSPCRPAPGLQCQPHVHTQWP--------------------E 906
++Q +PV + + +P P CQP + Q P
Sbjct: 154 SVQHDSNPVQELDVNCSGPTPPPPITIPSCQPSLSLQRPALEDLLLGSDASITCTLNGLR 213
Query: 907 KIRGCQLHLAASGGKDGVQASPTRDSCGCYNVFSILPALADPWNKERTFSC 1059
G S GKD VQ ++SCGCY+V S+LP A+ WN +F C
Sbjct: 214 NPEGAVFTWEPSTGKDAVQKKAVQNSCGCYSVSSVLPGCAERWNSGASFKC 264
>ref|XP_001478032.2| PREDICTED: hypothetical protein LOC100047361 [Mus musculus].
Length = 411
Score = 112 bits (279), Expect = 6e-25
Identities = 56/105 (53%), Positives = 74/105 (70%)
Frame = +2
Query: 104 LLQGVQGEEKLVDSGGGLVQPGGSLRLSCVGSGFLFSSYNMIWVRQAPGKGLEWLAGIDE 283
LL G+ + +L +SG GLV P SL ++C SGF + Y + WVRQ PGKGLEWL I
Sbjct: 253 LLPGILSQVQLKESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWG 312
Query: 284 RGSETYYADSVKGRFTISRDNSQNTAYLRMNSLRTEDTARYYCAR 418
GS T Y ++K R +IS+DNS++ +L+MNSL+T+DTARYYCAR
Sbjct: 313 DGS-TDYNSALKSRLSISKDNSKSQVFLKMNSLQTDDTARYYCAR 356
Score = 83.2 bits (204), Expect = 3e-16
Identities = 42/94 (44%), Positives = 61/94 (64%)
Frame = +2
Query: 116 VQGEEKLVDSGGGLVQPGGSLRLSCVGSGFLFSSYNMIWVRQAPGKGLEWLAGIDERGSE 295
V + ++ +SG LVQP +L L+C SGF SSY + W R+ P KGLEWL GI GS
Sbjct: 17 VLSQVQMKESGPDLVQPSQTLSLTCTVSGFSLSSYGVHWFRKPPRKGLEWLGGIWSGGS- 75
Query: 296 TYYADSVKGRFTISRDNSQNTAYLRMNSLRTEDT 397
YY ++ R ++SRD S++ + +M+SL++EDT
Sbjct: 76 IYYNPALSSRLSVSRDISKSQVFFKMSSLQSEDT 109
>ref|XP_923669.1| PREDICTED: putative V-set and immunoglobulin domain-containing
protein 6-like [Mus musculus].
Length = 208
Score = 108 bits (269), Expect = 9e-24
Identities = 68/176 (38%), Positives = 96/176 (54%), Gaps = 9/176 (5%)
Frame = +2
Query: 86 WVVLFALLQGVQGEEKLVDSGGGLVQPGGSLRLSCVGSGFLFSSYNMIWVRQAPGKGLEW 265
++ L A V + +L +SG GLV P SL ++C SGF +SY + WVRQ PGKGLEW
Sbjct: 7 FLCLVAFPSCVLSQVQLKESGPGLVAPSQSLSITCTVSGFSLTSYGVHWVRQPPGKGLEW 66
Query: 266 LAGIDERGSETYYADSVKGRFTISRDNSQNTAYLRMNSLRTEDTARYYCAR-------CY 424
L G+ G T Y ++ R +IS+DNS++ +L+MNSL+T+DTA YYCAR C
Sbjct: 67 L-GVIWAGGSTNYNSALMSRLSISKDNSKSQVFLKMNSLQTDDTAMYYCARDTVREVQCE 125
Query: 425 VGGYSGHFDAMDLWGPGXXXXXXXXXXTSPKIFPLTLGSSEPAG--YVVIACLVRD 586
+ + DA D G + K FP +L + +G YV + V+D
Sbjct: 126 LAQKPPYKDAQDQQG----------ALRTNKFFPGSLQNPGSSGLCYVSLCLNVKD 171
>ref|XP_003086828.1| PREDICTED: hypothetical protein LOC100505002 [Mus musculus].
Length = 302
Score = 104 bits (260), Expect = 1e-22
Identities = 50/114 (43%), Positives = 73/114 (64%), Gaps = 2/114 (1%)
Frame = +2
Query: 83 NWVVLFAL--LQGVQGEEKLVDSGGGLVQPGGSLRLSCVGSGFLFSSYNMIWVRQAPGKG 256
+W+ LF L GV E +L SG L++PG S+++SC SG+ F+ Y M WV+Q+ GK
Sbjct: 4 SWIFLFLLSGTAGVLSEVQLQQSGPELLKPGASVKISCKASGYTFTDYTMHWVKQSHGKS 63
Query: 257 LEWLAGIDERGSETYYADSVKGRFTISRDNSQNTAYLRMNSLRTEDTARYYCAR 418
LEW+ GI+ T Y + K + T++ D S +TAY+ + SL +ED+A YYCAR
Sbjct: 64 LEWIGGINPNYGGTSYNEKFKDKATLTVDKSSSTAYMELRSLTSEDSAVYYCAR 117
Score = 73.9 bits (180), Expect = 2e-13
Identities = 39/102 (38%), Positives = 61/102 (59%)
Frame = +2
Query: 113 GVQGEEKLVDSGGGLVQPGGSLRLSCVGSGFLFSSYNMIWVRQAPGKGLEWLAGIDERGS 292
GV E L S +V+ G S+++SC SG+ F+ Y M WV+Q+ GK L+ + I+
Sbjct: 179 GVHSEVHLQQSLPKVVKAGPSVKISCKASGYSFTGYYMHWVKQSHGKILQRVEYINPYNG 238
Query: 293 ETYYADSVKGRFTISRDNSQNTAYLRMNSLRTEDTARYYCAR 418
T Y + K + T++ D S +TAY+ ++SL +ED+ Y CAR
Sbjct: 239 GTGYIEKFKDKATLTADKSFSTAYMHLSSLTSEDSEVYSCAR 280
Score = 59.7 bits (143), Expect = 4e-09
Identities = 27/63 (42%), Positives = 39/63 (61%)
Frame = +2
Query: 92 VLFALLQGVQGEEKLVDSGGGLVQPGGSLRLSCVGSGFLFSSYNMIWVRQAPGKGLEWLA 271
V + V E +L SG LV+PG S+++SC SG+ F+ Y M WV+Q+ GK LEW+
Sbjct: 112 VYYCARHSVNSEVQLQQSGPELVKPGASVKISCKASGYSFTGYYMHWVKQSHGKSLEWIG 171
Query: 272 GID 280
I+
Sbjct: 172 EIN 174
>ref|XP_003086829.1| PREDICTED: similar to immunoglobulin mu-chain-like [Mus musculus].
Length = 124
Score = 103 bits (258), Expect = 2e-22
Identities = 50/114 (43%), Positives = 73/114 (64%), Gaps = 2/114 (1%)
Frame = +2
Query: 83 NWVVLFAL--LQGVQGEEKLVDSGGGLVQPGGSLRLSCVGSGFLFSSYNMIWVRQAPGKG 256
+W+ LF L GV E +L SG LV+PG S+++SC SG+ F++Y M WV+Q+ GK
Sbjct: 4 SWIFLFLLSGTAGVLSEVQLHQSGPELVKPGASVKMSCKASGYTFTNYYMHWVKQSHGKS 63
Query: 257 LEWLAGIDERGSETYYADSVKGRFTISRDNSQNTAYLRMNSLRTEDTARYYCAR 418
+EW+ I +T Y KG+ T++ D S +TAY+ + SL +ED+A YYCAR
Sbjct: 64 IEWIGYIYPNNGDTSYNQKFKGKATLTVDKSSSTAYMELRSLTSEDSAVYYCAR 117
>ref|XP_001474061.2| PREDICTED: hypothetical protein LOC100045292 [Mus musculus].
Length = 419
Score = 97.1 bits (240), Expect = 2e-20
Identities = 47/106 (44%), Positives = 67/106 (63%), Gaps = 3/106 (2%)
Frame = +2
Query: 104 LLQGVQGEEKLVDSGGGLVQPGGSLRLSCVGSGFLFSSYNMIWVRQAPGKGLEWLAGIDE 283
LL G + +L SG LV+PG S+++SC SG+ F+SY M WV+Q PG+GLEW+ ID
Sbjct: 4 LLAGFNSQVQLQQSGAELVRPGASVKMSCKASGYTFTSYWMHWVKQRPGQGLEWIGAIDP 63
Query: 284 RGSETYYADSVK---GRFTISRDNSQNTAYLRMNSLRTEDTARYYC 412
SET Y K + T++ D S + AY++ +SL +ED+ YYC
Sbjct: 64 SDSETIYNQKFKDSRDKATLTVDKSSSIAYMQFSSLTSEDSVVYYC 109
>ref|NP_058679.1| immunoglobulin omega chain precursor [Mus musculus].
Length = 142
Score = 49.3 bits (116), Expect = 5e-06
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = +2
Query: 167 GGSLRLSC-VGSGFLFSSYNMIWVRQAPGKGLEWLAGIDERGSETYYADSVKGRFTISRD 343
G ++RLSC + + Y++ W +Q PG +L S+ + + RF+ S+D
Sbjct: 34 GATIRLSCTLSNDHNIGIYSIYWYQQRPGHPPRFLLRYFSH-SDKHQGPDIPPRFSGSKD 92
Query: 344 NSQNTAYLRMNSLRTEDTARYYCA 415
++N YL ++ L+ ED A YYCA
Sbjct: 93 TARNLGYLSISELQPEDEAVYYCA 116
>ref|NP_058678.1| immunoglobulin iota chain precursor [Mus musculus].
Length = 142
Score = 49.3 bits (116), Expect = 5e-06
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = +2
Query: 167 GGSLRLSC-VGSGFLFSSYNMIWVRQAPGKGLEWLAGIDERGSETYYADSVKGRFTISRD 343
G ++RLSC + + Y++ W +Q PG +L S+ + + RF+ S+D
Sbjct: 34 GATIRLSCTLSNDHNIGIYSIYWYQQRPGHPPRFLLRYFSH-SDKHQGPDIPPRFSGSKD 92
Query: 344 NSQNTAYLRMNSLRTEDTARYYCA 415
++N YL ++ L+ ED A YYCA
Sbjct: 93 TTRNLGYLSISELQPEDEAVYYCA 116
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 43,273,382
Number of extensions: 1394434
Number of successful extensions: 7005
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 6869
Number of HSP's successfully gapped: 17
Length of query: 354
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 252
Effective length of database: 12,553,887
Effective search space: 3163579524
Effective search space used: 3163579524
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001576
(1064 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_998993.1| IgG heavy chain [Sus scrofa]. 255 3e-68
Alignment gi|XP_003359207.1| PREDICTED: immunoglobulin lambda-like polype... 70 2e-12
Alignment gi|XP_003359212.1| PREDICTED: ig lambda chain V-III region SH-l... 49 5e-06
Alignment gi|NP_001068585.1| VpreB protein [Sus scrofa]. 49 5e-06
>ref|NP_998993.1| IgG heavy chain [Sus scrofa].
Length = 474
Score = 255 bits (652), Expect = 3e-68
Identities = 151/306 (49%), Positives = 187/306 (61%), Gaps = 17/306 (5%)
Frame = +2
Query: 68 MEFRLNWVVLFALLQGVQGEEKLVDSGGGLVQPGGSLRLSCVGSGFLFSSYNMIWVRQAP 247
MEFRLNWVVLFALLQGVQGEEKLV+SGGGLVQPGGSL+LSCV SGF+FS Y + WVR P
Sbjct: 1 MEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLKLSCVASGFIFSKYIVNWVRLVP 60
Query: 248 GKGLEWLAGIDERGSETYYADSVKGRFTISRDNSQNTAYLRMNSLRTEDTARYYCAR--C 421
GKGLEWLA I GS T+YADSVKGRFTISRDNSQNTAYL+MNSLRTEDTA YYCAR C
Sbjct: 61 GKGLEWLASIWSTGS-THYADSVKGRFTISRDNSQNTAYLQMNSLRTEDTALYYCAREVC 119
Query: 422 Y---VGGYSGHFDAMDLWGPGXXXXXXXXXXTSPKIFPLTLGSSEPAG-YVVIACLVRDF 589
+ G + G++ MDLWGPG T+P ++PL + +G V + CL +
Sbjct: 120 FRYNTGCWDGYY-GMDLWGPGVEVVVSSAPKTAPSVYPLAPCGRDTSGPNVALGCLASSY 178
Query: 590 FPSEPLTVTWSPSREGVIVRNFPPA-QAGGLYTMSSQLTLPVEQCPADQILKCQVQH--- 757
FP EP+T+TW+ V FP Q GLY++SS +T+P + + C V H
Sbjct: 179 FP-EPVTMTWNSGALTSGVHTFPSVLQPSGLYSLSSMVTVPASSL-SSKSYTCNVNHPAT 236
Query: 758 LSKSSQSVNV-----XXXXXXXXXXXXSLSLQPPALAD-LLLGSNASLTCTLSGLKKSEG 919
+K + V S+ + PP D L++ +TC + + K
Sbjct: 237 TTKVDKRVGTKTKPPCPICPGCEVAGPSVFIFPPKPKDTLMISQTPEVTCVVVDVSKEHA 296
Query: 920 -VSFTW 934
V F+W
Sbjct: 297 EVQFSW 302
>ref|XP_003359207.1| PREDICTED: immunoglobulin lambda-like polypeptide 5-like [Sus
scrofa].
Length = 233
Score = 70.1 bits (170), Expect = 2e-12
Identities = 68/228 (29%), Positives = 92/228 (40%), Gaps = 7/228 (3%)
Frame = +2
Query: 95 LFALLQGVQGEEKLVDSGGGLVQPGGSLRLSCVGSGFLFSSYNMIWVRQAPGKGLEWLAG 274
L +L G +L G V GG+ ++C G F SY W +Q PG+ +
Sbjct: 10 LLSLCTGYVASSQLTQPPGVSVSLGGTASITCQGGNF--GSYYAHWYKQKPGQSP--MLV 65
Query: 275 IDERGSETYYADSVKGRFTISRDNSQNTAYLRMNSLRTEDTARYYCARCYVGGYSGHFDA 454
I E A + RF+ S+ S NTA L ++ + ED A YYC S DA
Sbjct: 66 IYEYNKR---ASGIPDRFSGSK--SGNTATLTISGAQAEDEADYYCQS------SDDSDA 114
Query: 455 MDLWGPGXXXXXXXXXXTSP--KIFPLTLGSSEPAG--YVVIACLVRDFFPSEPLTVTWS 622
L+G G +P +FP SSE G + CL+ DF+P +TVTW
Sbjct: 115 GPLFGRGTRLSVLRQPKAAPTVNLFP---PSSEELGTNKATLVCLISDFYPG-AVTVTWK 170
Query: 623 PSREGV---IVRNFPPAQAGGLYTMSSQLTLPVEQCPADQILKCQVQH 757
V + P Q+ Y SS L L + CQV H
Sbjct: 171 AGGTTVTQGVETTKPSKQSNNKYAASSYLALSASDWKSSSGFTCQVTH 218
>ref|XP_003359212.1| PREDICTED: ig lambda chain V-III region SH-like [Sus scrofa].
Length = 179
Score = 48.9 bits (115), Expect = 5e-06
Identities = 55/185 (29%), Positives = 76/185 (41%), Gaps = 3/185 (1%)
Frame = +2
Query: 95 LFALLQGVQGEEKLVDSGGGLVQPGGSLRLSCVGSGFLFSSYNMIWVRQAPGKGLEWLAG 274
L +L G KL G V GG+ ++C G F SY W +Q PG+ +
Sbjct: 10 LLSLCTGYVASSKLTQPPGVSVSLGGTASIACQGDNF--GSYYAHWYQQKPGQSP--MLV 65
Query: 275 IDERGSETYYADSVKGRFTISRDNSQNTAYLRMNSLRTEDTARYYCARCYVGGYSGHFDA 454
I E A + RF+ S+ S NTA L ++ + ED A YYC + Y+ H D
Sbjct: 66 IYEYNKR---ASGIPDRFSGSK--SGNTATLTISGAQAEDEADYYC-QSSDDSYTPHSDT 119
Query: 455 MDLWGPGXXXXXXXXXXTSPKIFPLTLGSSEPAGYVVIACLVRDFFPSEPLTVTWSP--- 625
G G T P++ L L E G CL+ S P+ + SP
Sbjct: 120 ----GGG-----GRGTQTPPQLGHLLLQHQEACGQSKNRCLLGSTDLSSPIFPSPSPQAG 170
Query: 626 SREGV 640
S +GV
Sbjct: 171 SAQGV 175
>ref|NP_001068585.1| VpreB protein [Sus scrofa].
Length = 148
Score = 48.9 bits (115), Expect = 5e-06
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 5/117 (4%)
Frame = +2
Query: 80 LNWVVLFALLQGVQ---GEEKLVDSGGGLVQP-GGSLRLSCVGSGFL-FSSYNMIWVRQA 244
++W ++ LL G ++L+D + G ++ L+C S L S YN+ W +Q
Sbjct: 1 MSWALILLLLLAHCTGCGPQQLLDQPPSVSSSLGTTIHLACTLSRDLDISIYNIQWYQQW 60
Query: 245 PGKGLEWLAGIDERGSETYYADSVKGRFTISRDNSQNTAYLRMNSLRTEDTARYYCA 415
PG +L S+ V RF+ S+D ++NT YL ++ L+ ED A Y+CA
Sbjct: 61 PGHPPRFLLSYFSH-SDKIQGHKVPPRFSGSKDVAKNTGYLSISELQPEDEAVYFCA 116
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,614,013
Number of extensions: 1083678
Number of successful extensions: 5576
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5489
Number of HSP's successfully gapped: 4
Length of query: 354
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 254
Effective length of database: 8,854,232
Effective search space: 2248974928
Effective search space used: 2248974928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001576
(1064 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896422.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 595 e-167
gb|GL896114.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 214 7e-53
>gb|GL896422.1| Sus scrofa unplaced genomic scaffold chrU_scaffold764
Length = 7672
Score = 595 bits (300), Expect = e-167
Identities = 303/304 (99%)
Strand = Plus / Plus
Query: 494 tcagtgtctgaaaccagccccaaaatcttcccactgactctggggagcagcgagcctgcc 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1885 tcagtgtctgaaaccagccccaaaatcttcccactgactctggggagcagcgagcctgcc 1944
Query: 554 ggatatgtggtcatcgcctgcctggtccgggacttcttcccgtcagagcccctgacagta 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1945 ggatatgtggtcatcgcctgcctggtccgggacttcttcccgtcagagcccctgacagta 2004
Query: 614 acctggagccctagtcgcgagggcgttattgtcagaaacttcccccctgcgcaggccggg 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2005 acctggagccctagtcgcgagggcgttattgtcagaaacttcccccctgcgcaggccggg 2064
Query: 674 ggcctgtacaccatgagcagccagctgaccttgccagtcgagcagtgcccagccgatcag 733
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2065 ggcctgtacaccatgagcagccaggtgaccttgccagtcgagcagtgcccagccgatcag 2124
Query: 734 atcctgaagtgccaagtgcagcacctctccaaatccagccagtccgtgaacgtgccctgc 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2125 atcctgaagtgccaagtgcagcacctctccaaatccagccagtccgtgaacgtgccctgc 2184
Query: 794 aaag 797
||||
Sbjct: 2185 aaag 2188
Score = 418 bits (211), Expect = e-114
Identities = 259/271 (95%), Gaps = 3/271 (1%)
Strand = Plus / Plus
Query: 796 agatccatgtccccagtgctgcaagcccagcctgtccctgcagccaccagcccttgcaga 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2346 agatccatgtccccagtgctgcaagcccagcctgtccctgcagccaccagcccttgcaga 2405
Query: 856 cctgctcctgggctccaatgccagcctcacgtgcacactcagtggcctgaaaaaatccga 915
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 2406 cctgctcctgggctccaatgccagcctcacctgcacactcagtggcctgaaaaaatccga 2465
Query: 916 gggtgtcagcttcacctggcag-cctcaggtgggaaggatggcgtccaggcgtcccccac 974
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 2466 gggtgtcagcttcacctggcagccctcaggtgggaaggatgccgtccaggcgtcccccac 2525
Query: 975 gcgtgattcctgtggctgctacaacgtgttcagcatcctgccagccttggctgatccttg 1034
||||||||||||||||||||||| ||||| |||||||||||||| || |||||||||||
Sbjct: 2526 gcgtgattcctgtggctgctacagcgtgtccagcatcctgccaggctgtgctgatccttg 2585
Query: 1035 gaac-aaggaaagaacattctcctgccccgc 1064
|||| ||||| || |||||||||||| ||||
Sbjct: 2586 gaacaaaggagag-acattctcctgcaccgc 2615
>gb|GL896114.1| Sus scrofa unplaced genomic scaffold chrU_scaffold487
Length = 3028
Score = 214 bits (108), Expect = 7e-53
Identities = 158/172 (91%), Gaps = 2/172 (1%)
Strand = Plus / Minus
Query: 248 gggaaggggctggagtggctggcaggtattgacgag-aggggtagtgagacctactacgc 306
|||||||||||||||||||||||| |||| || || || ||| || |||||||||||
Sbjct: 2633 gggaaggggctggagtggctggcatatatt-actagtagtggtggtagcacctactacgc 2575
Query: 307 agactctgtgaagggccgattcaccatctctagagacaactcccagaacacggcctatct 366
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 2574 agactctgtgaagggccgattcaccatctccagcgacaactcccagaacacggcctatct 2515
Query: 367 gcgaatgaacagcctgagaaccgaagacacggcccgctattattgtgcaaga 418
|| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 2514 gcaaatgaacagcctgagaaccgaagacacggcccgctattactgtgcaaga 2463
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,149,612
Number of extensions: 199
Number of successful extensions: 199
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 3
Length of query: 1064
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1043
Effective length of database: 2,808,413,156
Effective search space: 2929174921708
Effective search space used: 2929174921708
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)