Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001579
(1139 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776851.1| protein Plunc precursor [Bos taurus]. 270 2e-72
Alignment gi|NP_001035625.1| short palate, lung and nasal epithelium carc... 67 3e-11
Alignment gi|XP_002692345.1| PREDICTED: long palate lung and nasal epithe... 58 2e-08
Alignment gi|XP_603450.3| PREDICTED: long palate lung and nasal epitheliu... 58 2e-08
Alignment gi|NP_777122.1| long palate, lung and nasal epithelium carcinom... 57 4e-08
Alignment gi|NP_777227.1| short palate, lung and nasal epithelium carcino... 52 7e-07
>ref|NP_776851.1| protein Plunc precursor [Bos taurus].
Length = 255
Score = 270 bits (690), Expect = 2e-72
Identities = 143/213 (67%), Positives = 164/213 (76%)
Frame = +3
Query: 249 SPTDLVXXXXXXXXXXXXXEGVLGILGNLPLLDILKAGGNTPXXXXXXXXXXXXXTIPLL 428
SP DL EG+LGIL NLPLLDILK GN P PLL
Sbjct: 43 SPPDLAGSLTGALSNGLLSEGLLGILENLPLLDILKTRGNAPSGLLGSLLGKVTSLTPLL 102
Query: 429 NDIVDLQITDPQLLELGLVQSPDGHRLYVTIPLSLVLNVKTSVVGSLLKLAVKLNITVEL 608
N+I++L+IT+PQLLELGLVQSPDGHRLYVTIPL ++LNVKTS+VGSLLKLAVKLNITVEL
Sbjct: 103 NNIIELKITNPQLLELGLVQSPDGHRLYVTIPLGMILNVKTSLVGSLLKLAVKLNITVEL 162
Query: 609 LAVKDEQGKSHLVLGDCTHSPGSLKISLLDGLGPLVPQDLLDSITGVLDNVLPGLVQGEV 788
LAV DEQ HLV+G+CTHSPGSL+I LLDGLG L Q +D++TG+L++VLPGLVQG+V
Sbjct: 163 LAVTDEQKHVHLVVGNCTHSPGSLQIFLLDGLGSLPIQSFVDNLTGILNDVLPGLVQGKV 222
Query: 789 CPLVNEVLSHLDVTLVHSIVDALIQGQEFVIKV 887
CPLVN VLS LDVTLVHSIV+ALI G +FVIKV
Sbjct: 223 CPLVNAVLSRLDVTLVHSIVNALIHGLQFVIKV 255
>ref|NP_001035625.1| short palate, lung and nasal epithelium carcinoma-associated
protein 3 [Bos taurus].
Length = 238
Score = 67.0 bits (162), Expect = 3e-11
Identities = 40/134 (29%), Positives = 69/134 (51%)
Frame = +3
Query: 450 ITDPQLLELGLVQSPDGHRLYVTIPLSLVLNVKTSVVGSLLKLAVKLNITVELLAVKDEQ 629
IT+ QL G+ S I L ++++ ++K ++N++VE KDE
Sbjct: 95 ITNAQLDYGGIRMSFHKEWFTANISLGFDIDLRLPFNNHIIKTHERMNLSVEFWLEKDEF 154
Query: 630 GKSHLVLGDCTHSPGSLKISLLDGLGPLVPQDLLDSITGVLDNVLPGLVQGEVCPLVNEV 809
G+ LV+G C P S+ + L P L + L+ V+P L++ +VCPL++E+
Sbjct: 155 GRRDLVIGKCHVEPRSVHTTFLTEAIPPKVNPFLRNFRDNLEKVIPHLIESQVCPLIDEI 214
Query: 810 LSHLDVTLVHSIVD 851
L LDV L+ S+++
Sbjct: 215 LRQLDVKLLKSLME 228
>ref|XP_002692345.1| PREDICTED: long palate lung and nasal epithelium protein 5-like
[Bos taurus].
Length = 482
Score = 57.8 bits (138), Expect = 2e-08
Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 9/161 (5%)
Frame = +3
Query: 417 IPLLNDIVDLQITDP--QLLELGLVQSPDGHRLYVTIPLS----LVLNVKTSVVGSL--- 569
+PL+ ++ Q P +LL+LG + D VT+ + L + +++ + SL
Sbjct: 86 LPLIRGLLLGQSLSPLGELLQLGGLVIEDSEGPEVTLQVLSDSLLQVTLRSKLYLSLQRI 145
Query: 570 LKLAVKLNITVELLAVKDEQGKSHLVLGDCTHSPGSLKISLLDGLGPLVPQDLLDSITGV 749
L+L V NI + ++ K+H+ +C PG L I +L+ + PL+ + L +T V
Sbjct: 146 LRLRVIKNIRIGA-RLEQTGNKTHVAFEECHTPPGYLSIEVLEQMNPLLVNEALRLVTDV 204
Query: 750 LDNVLPGLVQGEVCPLVNEVLSHLDVTLVHSIVDALIQGQE 872
LD LP L+Q VCP +L+ L L+H + G E
Sbjct: 205 LDEALPFLLQKIVCPTATTLLNSLLEDLLHITLPPASSGPE 245
>ref|XP_603450.3| PREDICTED: long palate lung and nasal epithelium protein 5-like
[Bos taurus].
Length = 482
Score = 57.8 bits (138), Expect = 2e-08
Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 9/161 (5%)
Frame = +3
Query: 417 IPLLNDIVDLQITDP--QLLELGLVQSPDGHRLYVTIPLS----LVLNVKTSVVGSL--- 569
+PL+ ++ Q P +LL+LG + D VT+ + L + +++ + SL
Sbjct: 86 LPLIRGLLLGQSLSPLGELLQLGGLVIEDSEGPEVTLQVLSDSLLQVTLRSKLYLSLQRI 145
Query: 570 LKLAVKLNITVELLAVKDEQGKSHLVLGDCTHSPGSLKISLLDGLGPLVPQDLLDSITGV 749
L+L V NI + ++ K+H+ +C PG L I +L+ + PL+ + L +T V
Sbjct: 146 LRLRVIKNIRIGA-RLEQTGNKTHVAFEECHTPPGYLSIEVLEQMNPLLVNEALRLVTDV 204
Query: 750 LDNVLPGLVQGEVCPLVNEVLSHLDVTLVHSIVDALIQGQE 872
LD LP L+Q VCP +L+ L L+H + G E
Sbjct: 205 LDEALPFLLQKIVCPTATTLLNSLLEDLLHITLPPASSGPE 245
>ref|NP_777122.1| long palate, lung and nasal epithelium carcinoma-associated protein
1 precursor [Bos taurus].
Length = 473
Score = 56.6 bits (135), Expect = 4e-08
Identities = 39/130 (30%), Positives = 70/130 (53%), Gaps = 4/130 (3%)
Frame = +3
Query: 423 LLNDIVDLQITDPQLLELGLVQSPDGHRLYVTIPLSLVLNVKTSVVGSLLKLAVKLNITV 602
+L I+ +++T + +L + +G +L V PL +V L K V+L++ V
Sbjct: 78 ILKHILWMKVTSASIGQLQVQPLANGRQLMVKAPLDVVAGFNVP----LFKTVVELHVEV 133
Query: 603 ELLAV----KDEQGKSHLVLGDCTHSPGSLKISLLDGLGPLVPQDLLDSITGVLDNVLPG 770
E A+ E+ + LVL +C+++ GSL++SLL L L+ + L D + +L P
Sbjct: 134 EAQAIIHVETREKDHARLVLSECSNTGGSLRVSLLHKLSFLL-KCLADKVISLLTPAPPK 192
Query: 771 LVQGEVCPLV 800
LV+ E+CP++
Sbjct: 193 LVKSELCPVL 202
>ref|NP_777227.1| short palate, lung and nasal epithelium carcinoma-associated
protein 2B precursor [Bos taurus].
Length = 240
Score = 52.4 bits (124), Expect = 7e-07
Identities = 28/112 (25%), Positives = 62/112 (55%)
Frame = +3
Query: 513 VTIPLSLVLNVKTSVVGSLLKLAVKLNITVELLAVKDEQGKSHLVLGDCTHSPGSLKISL 692
V IP++ + V +G ++ L + +++ + +++ + +V+G+CT++P S+ +++
Sbjct: 116 VLIPITADVTVSLPFLGEIVDLDLNVDLQTTV-SIETDTEDPQVVVGECTNNPESISLTV 174
Query: 693 LDGLGPLVPQDLLDSITGVLDNVLPGLVQGEVCPLVNEVLSHLDVTLVHSIV 848
L LV D++D + V+ +V+GE+CP E+L LD V ++
Sbjct: 175 LHSRFGLV-NDVVDIGVNLARRVVSSVVEGELCPRFRELLESLDAECVEKLI 225
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 47,850,790
Number of extensions: 1518163
Number of successful extensions: 9764
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 9559
Number of HSP's successfully gapped: 6
Length of query: 379
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 275
Effective length of database: 14,240,222
Effective search space: 3916061050
Effective search space used: 3916061050
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001579
(1139 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852441.1| PREDICTED: similar to Protein Plunc precursor (... 261 9e-70
Alignment gi|XP_863018.1| PREDICTED: similar to Long palate, lung and nas... 80 4e-15
Alignment gi|XP_534384.1| PREDICTED: similar to Long palate, lung and nas... 80 4e-15
Alignment gi|XP_542960.2| PREDICTED: hypothetical protein XP_542960 [Cani... 67 4e-11
Alignment gi|XP_862947.1| PREDICTED: similar to Short palate, lung and na... 66 7e-11
Alignment gi|XP_851034.1| PREDICTED: similar to Short palate, lung and na... 66 7e-11
Alignment gi|XP_862971.1| PREDICTED: similar to Short palate, lung and na... 64 4e-10
>ref|XP_852441.1| PREDICTED: similar to Protein Plunc precursor (Palate lung and
nasal epithelium clone protein) (Lung specific X
protein) (Nasopharyngeal carcinoma-related protein)
(Tracheal epithelium enriched protein) (Secretory
protein in upper respiratory tracts) (Von Ebn... [Canis
familiaris].
Length = 255
Score = 261 bits (667), Expect = 9e-70
Identities = 145/255 (56%), Positives = 167/255 (65%), Gaps = 6/255 (2%)
Frame = +3
Query: 141 MSQVAGLIVFCG------XXXXXXXXXXXXXXXXXXXXXXDQSPTDLVXXXXXXXXXXXX 302
M Q GLIVFCG D SPTDL
Sbjct: 1 MFQTGGLIVFCGLLAQTTTLLEALSLPLEHTLFLEATPGQDPSPTDLAGDLTDGLSSGLL 60
Query: 303 XEGVLGILGNLPLLDILKAGGNTPXXXXXXXXXXXXXTIPLLNDIVDLQITDPQLLELGL 482
G+L IL NLPLL+ILK GG T +PLL+ I++L+IT+PQLLELGL
Sbjct: 61 SGGLLDILENLPLLNILKTGGGTSGGLLGGLLGKVTSMVPLLDSIIELKITNPQLLELGL 120
Query: 483 VQSPDGHRLYVTIPLSLVLNVKTSVVGSLLKLAVKLNITVELLAVKDEQGKSHLVLGDCT 662
VQSPDGHRLYVTIPL +VLNV T + SL+KLAVKLNIT E+LAVK++QGK HL+LGDCT
Sbjct: 121 VQSPDGHRLYVTIPLGIVLNVNTPLTSSLVKLAVKLNITAEILAVKNDQGKIHLILGDCT 180
Query: 663 HSPGSLKISLLDGLGPLVPQDLLDSITGVLDNVLPGLVQGEVCPLVNEVLSHLDVTLVHS 842
HSPGSL+ISLL+G PL Q L+DS++ L+ VLP LVQGEVCPLVNEVLS LDVTLVHS
Sbjct: 181 HSPGSLQISLLNGFAPLPVQSLVDSLSSFLNKVLPELVQGEVCPLVNEVLSELDVTLVHS 240
Query: 843 IVDALIQGQEFVIKV 887
I + LI G EFVIKV
Sbjct: 241 IAELLIHGLEFVIKV 255
>ref|XP_863018.1| PREDICTED: similar to Long palate, lung and nasal epithelium
carcinoma associated protein 1 precursor (Von Ebner
minor salivary gland protein) (VEMSGP) isoform 2 [Canis
familiaris].
Length = 475
Score = 80.1 bits (196), Expect = 4e-15
Identities = 54/175 (30%), Positives = 91/175 (52%), Gaps = 2/175 (1%)
Frame = +3
Query: 321 ILGNLPLLDIL--KAGGNTPXXXXXXXXXXXXXTIPLLNDIVDLQITDPQLLELGLVQSP 494
IL LPLL + K G P +LN I+ L++T +L+L + S
Sbjct: 52 ILQQLPLLSSIREKPAGGIPILGNVVNS--------ILNHIIWLKVTSANILQLQVEPSD 103
Query: 495 DGHRLYVTIPLSLVLNVKTSVVGSLLKLAVKLNITVELLAVKDEQGKSHLVLGDCTHSPG 674
+G L V IPL +V + T +V +++++ ++ + + +E+G +HLVL DC+ S G
Sbjct: 104 EGQGLTVKIPLDMVAGLNTPLVKTIVEMHMETEVQAIIRVNTNERGHAHLVLADCSTSQG 163
Query: 675 SLKISLLDGLGPLVPQDLLDSITGVLDNVLPGLVQGEVCPLVNEVLSHLDVTLVH 839
SL+ISLL L LV L +++ L LP LV+ ++CP++ + L++
Sbjct: 164 SLRISLLHKLSFLV-NSLANTVMDFLVPALPKLVKIQLCPVLEAAFEDMHADLMN 217
>ref|XP_534384.1| PREDICTED: similar to Long palate, lung and nasal epithelium
carcinoma associated protein 1 precursor (Von Ebner
minor salivary gland protein) (VEMSGP) isoform 1 [Canis
familiaris].
Length = 475
Score = 80.1 bits (196), Expect = 4e-15
Identities = 54/175 (30%), Positives = 91/175 (52%), Gaps = 2/175 (1%)
Frame = +3
Query: 321 ILGNLPLLDIL--KAGGNTPXXXXXXXXXXXXXTIPLLNDIVDLQITDPQLLELGLVQSP 494
IL LPLL + K G P +LN I+ L++T +L+L + S
Sbjct: 52 ILQQLPLLSSIREKPAGGIPILGNVVNS--------ILNHIIWLKVTSANILQLQVEPSD 103
Query: 495 DGHRLYVTIPLSLVLNVKTSVVGSLLKLAVKLNITVELLAVKDEQGKSHLVLGDCTHSPG 674
+G L V IPL +V + T +V +++++ ++ + + +E+G +HLVL DC+ S G
Sbjct: 104 EGQGLTVKIPLDMVAGLNTPLVKTIVEMHMETEVQAIIRVNTNERGHAHLVLADCSTSQG 163
Query: 675 SLKISLLDGLGPLVPQDLLDSITGVLDNVLPGLVQGEVCPLVNEVLSHLDVTLVH 839
SL+ISLL L LV L +++ L LP LV+ ++CP++ + L++
Sbjct: 164 SLRISLLHKLSFLV-NSLANTVMDFLVPALPKLVKIQLCPVLEAAFEDMHADLMN 217
>ref|XP_542960.2| PREDICTED: hypothetical protein XP_542960 [Canis familiaris].
Length = 439
Score = 66.6 bits (161), Expect = 4e-11
Identities = 62/209 (29%), Positives = 95/209 (45%), Gaps = 3/209 (1%)
Frame = +3
Query: 414 TIPLLNDIVD---LQITDPQLLELGLVQSPDGHRLYVTIPLSLVLNVKTSVVGSLLKLAV 584
++PLL +++ L I D + E+ L D L VT+ L L+++ +L+L V
Sbjct: 97 SLPLLRELLQAGGLVIEDVKGPEVTLQILSDS-LLQVTLRSKLYLSLQ-----EILRLKV 150
Query: 585 KLNITVELLAVKDEQGKSHLVLGDCTHSPGSLKISLLDGLGPLVPQDLLDSITGVLDNVL 764
NI + + ++ K+ +V +C PG L I +L+ + PL+ + L+ +T VLD L
Sbjct: 151 IKNIRIGV-RLEHTGNKTKVVFEECHTPPGYLSIKVLEQMDPLLVNEALELVTSVLDEAL 209
Query: 765 PGLVQGEVCPLVNEVLSHLDVTLVHSIVDALIQGQEFVIKV*ALPAGDLPLLSWTISCCP 944
P L+Q VCPL +L+ L L+H + I G E D T
Sbjct: 210 PFLLQKIVCPLATTLLNSLLEGLLHITLPPTISGPE-----------DFQYYVTTTEFTE 258
Query: 945 IHSLPSTRRLTKGQPMSRKRTPGLETKQP 1031
L R +T P R R P L T QP
Sbjct: 259 EAILMKVRLVTPCSPDHRPRRPALLTPQP 287
>ref|XP_862947.1| PREDICTED: similar to Short palate, lung and nasal epithelium
carcinoma associated protein 2 precursor (Parotid
secretory protein) (PSP) isoform 2 [Canis familiaris].
Length = 287
Score = 65.9 bits (159), Expect = 7e-11
Identities = 35/146 (23%), Positives = 80/146 (54%), Gaps = 1/146 (0%)
Frame = +3
Query: 417 IPLLNDIVDLQITDPQLLELGLVQSPDGHRLYVTIPLSLVLNVKTSVVGSLLKLAVKLNI 596
+P +D + L I + ++L++ + DG L + IP+ + + ++ ++ L V L++
Sbjct: 131 VPAKDDTLGLNIINSRILKIKAELTLDGEGLNIRIPVVANVTLALPLIDRVVNLKVSLDL 190
Query: 597 TVEL-LAVKDEQGKSHLVLGDCTHSPGSLKISLLDGLGPLVPQDLLDSITGVLDNVLPGL 773
+ LA + G +++G C+ S+ +++LD L+ + ++++ L L L
Sbjct: 191 VTSVRLATNAQTGAVTVIVGKCSSDEDSISLTVLDSHNGLI-EKAANTVSSFLTKTLSRL 249
Query: 774 VQGEVCPLVNEVLSHLDVTLVHSIVD 851
++ +VCPL++ +LS+LD ++ I+D
Sbjct: 250 IEKDVCPLIHTLLSNLDGHIIQDIID 275
>ref|XP_851034.1| PREDICTED: similar to Short palate, lung and nasal epithelium
carcinoma associated protein 2 precursor (Parotid
secretory protein) (PSP) isoform 1 [Canis familiaris].
Length = 249
Score = 65.9 bits (159), Expect = 7e-11
Identities = 35/146 (23%), Positives = 80/146 (54%), Gaps = 1/146 (0%)
Frame = +3
Query: 417 IPLLNDIVDLQITDPQLLELGLVQSPDGHRLYVTIPLSLVLNVKTSVVGSLLKLAVKLNI 596
+P +D + L I + ++L++ + DG L + IP+ + + ++ ++ L V L++
Sbjct: 93 VPAKDDTLGLNIINSRILKIKAELTLDGEGLNIRIPVVANVTLALPLIDRVVNLKVSLDL 152
Query: 597 TVEL-LAVKDEQGKSHLVLGDCTHSPGSLKISLLDGLGPLVPQDLLDSITGVLDNVLPGL 773
+ LA + G +++G C+ S+ +++LD L+ + ++++ L L L
Sbjct: 153 VTSVRLATNAQTGAVTVIVGKCSSDEDSISLTVLDSHNGLI-EKAANTVSSFLTKTLSRL 211
Query: 774 VQGEVCPLVNEVLSHLDVTLVHSIVD 851
++ +VCPL++ +LS+LD ++ I+D
Sbjct: 212 IEKDVCPLIHTLLSNLDGHIIQDIID 237
>ref|XP_862971.1| PREDICTED: similar to Short palate, lung and nasal epithelium
carcinoma associated protein 2 precursor (Parotid
secretory protein) (PSP) isoform 3 [Canis familiaris].
Length = 281
Score = 63.5 bits (153), Expect = 4e-10
Identities = 34/145 (23%), Positives = 79/145 (54%), Gaps = 1/145 (0%)
Frame = +3
Query: 417 IPLLNDIVDLQITDPQLLELGLVQSPDGHRLYVTIPLSLVLNVKTSVVGSLLKLAVKLNI 596
+P +D + L I + ++L++ + DG L + IP+ + + ++ ++ L V L++
Sbjct: 93 VPAKDDTLGLNIINSRILKIKAELTLDGEGLNIRIPVVANVTLALPLIDRVVNLKVSLDL 152
Query: 597 TVEL-LAVKDEQGKSHLVLGDCTHSPGSLKISLLDGLGPLVPQDLLDSITGVLDNVLPGL 773
+ LA + G +++G C+ S+ +++LD L+ + ++++ L L L
Sbjct: 153 VTSVRLATNAQTGAVTVIVGKCSSDEDSISLTVLDSHNGLI-EKAANTVSSFLTKTLSRL 211
Query: 774 VQGEVCPLVNEVLSHLDVTLVHSIV 848
++ +VCPL++ +LS+LD ++ I+
Sbjct: 212 IEKDVCPLIHTLLSNLDGHIIQDII 236
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 49,803,416
Number of extensions: 1550136
Number of successful extensions: 10004
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 9702
Number of HSP's successfully gapped: 7
Length of query: 379
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 275
Effective length of database: 15,407,560
Effective search space: 4237079000
Effective search space used: 4237079000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001579
(1139 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230122.1| protein Plunc precursor [Homo sapiens]. 254 1e-67
Alignment gi|NP_057667.1| protein Plunc precursor [Homo sapiens]. 254 1e-67
Alignment gi|NP_570913.1| protein Plunc precursor [Homo sapiens]. 254 1e-67
Alignment gi|NP_848561.2| short palate, lung and nasal epithelium carcino... 73 6e-13
Alignment gi|NP_542141.1| short palate, lung and nasal epithelium carcino... 71 2e-12
Alignment gi|NP_001035904.1| short palate, lung and nasal epithelium carc... 69 1e-11
Alignment gi|NP_149974.2| long palate, lung and nasal epithelium carcinom... 61 2e-09
>ref|NP_001230122.1| protein Plunc precursor [Homo sapiens].
Length = 256
Score = 254 bits (649), Expect = 1e-67
Identities = 137/214 (64%), Positives = 158/214 (73%), Gaps = 1/214 (0%)
Frame = +3
Query: 249 SPTDLVXXXXXXXXXXXXXEGVLGILGNLPLLDILKAGGNTPXXXXXXXXXXXXXTIPLL 428
SPT L G+LGIL NLPLLDILK GG T IP L
Sbjct: 43 SPTGLAGSLTNALSNGLLSGGLLGILENLPLLDILKPGGGTSGGLLGGLLGKVTSVIPGL 102
Query: 429 NDIVDLQITDPQLLELGLVQSPDGHRLYVTIPLSLVLNVKTSVVG-SLLKLAVKLNITVE 605
N+I+D+++TDPQLLELGLVQSPDGHRLYVTIPL + L V T +VG SLL+LAVKL+IT E
Sbjct: 103 NNIIDIKVTDPQLLELGLVQSPDGHRLYVTIPLGIKLQVNTPLVGASLLRLAVKLDITAE 162
Query: 606 LLAVKDEQGKSHLVLGDCTHSPGSLKISLLDGLGPLVPQDLLDSITGVLDNVLPGLVQGE 785
+LAV+D+Q + HLVLGDCTHSPGSL+ISLLDGLGPL Q LLDS+TG+L+ VLP LVQG
Sbjct: 163 ILAVRDKQERIHLVLGDCTHSPGSLQISLLDGLGPLPIQGLLDSLTGILNKVLPELVQGN 222
Query: 786 VCPLVNEVLSHLDVTLVHSIVDALIQGQEFVIKV 887
VCPLVNEVL LD+TLVH IV+ LI G +FVIKV
Sbjct: 223 VCPLVNEVLRGLDITLVHDIVNMLIHGLQFVIKV 256
>ref|NP_057667.1| protein Plunc precursor [Homo sapiens].
Length = 256
Score = 254 bits (649), Expect = 1e-67
Identities = 137/214 (64%), Positives = 158/214 (73%), Gaps = 1/214 (0%)
Frame = +3
Query: 249 SPTDLVXXXXXXXXXXXXXEGVLGILGNLPLLDILKAGGNTPXXXXXXXXXXXXXTIPLL 428
SPT L G+LGIL NLPLLDILK GG T IP L
Sbjct: 43 SPTGLAGSLTNALSNGLLSGGLLGILENLPLLDILKPGGGTSGGLLGGLLGKVTSVIPGL 102
Query: 429 NDIVDLQITDPQLLELGLVQSPDGHRLYVTIPLSLVLNVKTSVVG-SLLKLAVKLNITVE 605
N+I+D+++TDPQLLELGLVQSPDGHRLYVTIPL + L V T +VG SLL+LAVKL+IT E
Sbjct: 103 NNIIDIKVTDPQLLELGLVQSPDGHRLYVTIPLGIKLQVNTPLVGASLLRLAVKLDITAE 162
Query: 606 LLAVKDEQGKSHLVLGDCTHSPGSLKISLLDGLGPLVPQDLLDSITGVLDNVLPGLVQGE 785
+LAV+D+Q + HLVLGDCTHSPGSL+ISLLDGLGPL Q LLDS+TG+L+ VLP LVQG
Sbjct: 163 ILAVRDKQERIHLVLGDCTHSPGSLQISLLDGLGPLPIQGLLDSLTGILNKVLPELVQGN 222
Query: 786 VCPLVNEVLSHLDVTLVHSIVDALIQGQEFVIKV 887
VCPLVNEVL LD+TLVH IV+ LI G +FVIKV
Sbjct: 223 VCPLVNEVLRGLDITLVHDIVNMLIHGLQFVIKV 256
>ref|NP_570913.1| protein Plunc precursor [Homo sapiens].
Length = 256
Score = 254 bits (649), Expect = 1e-67
Identities = 137/214 (64%), Positives = 158/214 (73%), Gaps = 1/214 (0%)
Frame = +3
Query: 249 SPTDLVXXXXXXXXXXXXXEGVLGILGNLPLLDILKAGGNTPXXXXXXXXXXXXXTIPLL 428
SPT L G+LGIL NLPLLDILK GG T IP L
Sbjct: 43 SPTGLAGSLTNALSNGLLSGGLLGILENLPLLDILKPGGGTSGGLLGGLLGKVTSVIPGL 102
Query: 429 NDIVDLQITDPQLLELGLVQSPDGHRLYVTIPLSLVLNVKTSVVG-SLLKLAVKLNITVE 605
N+I+D+++TDPQLLELGLVQSPDGHRLYVTIPL + L V T +VG SLL+LAVKL+IT E
Sbjct: 103 NNIIDIKVTDPQLLELGLVQSPDGHRLYVTIPLGIKLQVNTPLVGASLLRLAVKLDITAE 162
Query: 606 LLAVKDEQGKSHLVLGDCTHSPGSLKISLLDGLGPLVPQDLLDSITGVLDNVLPGLVQGE 785
+LAV+D+Q + HLVLGDCTHSPGSL+ISLLDGLGPL Q LLDS+TG+L+ VLP LVQG
Sbjct: 163 ILAVRDKQERIHLVLGDCTHSPGSLQISLLDGLGPLPIQGLLDSLTGILNKVLPELVQGN 222
Query: 786 VCPLVNEVLSHLDVTLVHSIVDALIQGQEFVIKV 887
VCPLVNEVL LD+TLVH IV+ LI G +FVIKV
Sbjct: 223 VCPLVNEVLRGLDITLVHDIVNMLIHGLQFVIKV 256
>ref|NP_848561.2| short palate, lung and nasal epithelium carcinoma-associated
protein 3 isoform 1 [Homo sapiens].
Length = 254
Score = 72.8 bits (177), Expect = 6e-13
Identities = 43/136 (31%), Positives = 71/136 (52%)
Frame = +3
Query: 444 LQITDPQLLELGLVQSPDGHRLYVTIPLSLVLNVKTSVVGSLLKLAVKLNITVELLAVKD 623
+ IT+ QL G+ S I L L ++ S +++K+ ++I VE KD
Sbjct: 94 INITNIQLDCGGIQISFHKEWFSANISLEFDLELRPSFDNNIVKMCAHMSIVVEFWLEKD 153
Query: 624 EQGKSHLVLGDCTHSPGSLKISLLDGLGPLVPQDLLDSITGVLDNVLPGLVQGEVCPLVN 803
E G+ LV+G C P S+ +++L P L ++ L VLP +V+ +VCPL+
Sbjct: 154 EFGRRDLVIGKCDAEPSSVHVAILTEAIPPKMNQFLYNLKENLQKVLPHMVESQVCPLIG 213
Query: 804 EVLSHLDVTLVHSIVD 851
E+L LDV L+ S+++
Sbjct: 214 EILGQLDVKLLKSLIE 229
>ref|NP_542141.1| short palate, lung and nasal epithelium carcinoma-associated
protein 2 precursor [Homo sapiens].
Length = 249
Score = 71.2 bits (173), Expect = 2e-12
Identities = 39/146 (26%), Positives = 77/146 (52%), Gaps = 1/146 (0%)
Frame = +3
Query: 417 IPLLNDIVDLQITDPQLLELGLVQSPDGHRLYVTIPLSLVLNVKTSVVGSLLKLAVKLNI 596
+P DI L+I++ +L++ DG L ++ P++ + V ++G ++ L L++
Sbjct: 93 LPTNTDIFGLKISNSLILDVKAEPIDDGKGLNLSFPVTANVTVAGPIIGQIINLKASLDL 152
Query: 597 TVELLAVKDEQGKSHL-VLGDCTHSPGSLKISLLDGLGPLVPQDLLDSITGVLDNVLPGL 773
+ D Q + VLG+C P S+ +SLLD ++ + ++S+ L + + L
Sbjct: 153 LTAVTIETDPQTHQPVAVLGECASDPTSISLSLLDKHSQIINK-FVNSVINTLKSTVSSL 211
Query: 774 VQGEVCPLVNEVLSHLDVTLVHSIVD 851
+Q E+CPL+ + LDV ++ +VD
Sbjct: 212 LQKEICPLIRIFIHSLDVNVIQQVVD 237
>ref|NP_001035904.1| short palate, lung and nasal epithelium carcinoma-associated
protein 3 isoform 2 [Homo sapiens].
Length = 218
Score = 68.6 bits (166), Expect = 1e-11
Identities = 33/96 (34%), Positives = 56/96 (58%)
Frame = +3
Query: 564 SLLKLAVKLNITVELLAVKDEQGKSHLVLGDCTHSPGSLKISLLDGLGPLVPQDLLDSIT 743
+++K+ ++I VE KDE G+ LV+G C P S+ +++L P L ++
Sbjct: 98 NIVKMCAHMSIVVEFWLEKDEFGRRDLVIGKCDAEPSSVHVAILTEAIPPKMNQFLYNLK 157
Query: 744 GVLDNVLPGLVQGEVCPLVNEVLSHLDVTLVHSIVD 851
L VLP +V+ +VCPL+ E+L LDV L+ S+++
Sbjct: 158 ENLQKVLPHMVESQVCPLIGEILGQLDVKLLKSLIE 193
>ref|NP_149974.2| long palate, lung and nasal epithelium carcinoma-associated protein
1 precursor [Homo sapiens].
Length = 484
Score = 61.2 bits (147), Expect = 2e-09
Identities = 47/162 (29%), Positives = 73/162 (45%), Gaps = 2/162 (1%)
Frame = +3
Query: 321 ILGNLPLLDIL--KAGGNTPXXXXXXXXXXXXXTIPLLNDIVDLQITDPQLLELGLVQSP 494
IL LPLL + K G P +L I+ L++ +L+L + S
Sbjct: 52 ILQQLPLLSAMREKPAGGIPVLGSLVNT--------VLKHIIWLKVITANILQLQVKPSA 103
Query: 495 DGHRLYVTIPLSLVLNVKTSVVGSLLKLAVKLNITVELLAVKDEQGKSHLVLGDCTHSPG 674
+ L V IPL +V T +V ++++ + + G + LVL DC S G
Sbjct: 104 NDQELLVKIPLDMVAGFNTPLVKTIVEFHMTTEAQATIRMDTSASGPTRLVLSDCATSHG 163
Query: 675 SLKISLLDGLGPLVPQDLLDSITGVLDNVLPGLVQGEVCPLV 800
SL+I LL L LV L + +L LP LV+ ++CP++
Sbjct: 164 SLRIQLLHKLSFLV-NALAKQVMNLLVPSLPNLVKNQLCPVI 204
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,871,844
Number of extensions: 1513343
Number of successful extensions: 9402
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 9233
Number of HSP's successfully gapped: 7
Length of query: 379
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 275
Effective length of database: 14,868,908
Effective search space: 4088949700
Effective search space used: 4088949700
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001579
(1139 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035256.2| protein Plunc precursor [Mus musculus]. 251 7e-67
Alignment gi|NP_080266.2| palate lung and nasal carcinoma-like protein pr... 205 6e-53
Alignment gi|NP_001012392.1| long palate, lung and nasal epithelium carci... 63 5e-10
Alignment gi|NP_700467.2| long palate, lung and nasal epithelium carcinom... 63 5e-10
Alignment gi|NP_082804.1| short palate, lung and nasal epithelium carcino... 60 3e-09
Alignment gi|NP_032979.1| parotid secretory protein precursor [Mus muscul... 60 4e-09
Alignment gi|NP_659139.2| long palate lung and nasal epithelium protein 5... 52 7e-07
>ref|NP_035256.2| protein Plunc precursor [Mus musculus].
Length = 278
Score = 251 bits (641), Expect = 7e-67
Identities = 128/193 (66%), Positives = 154/193 (79%)
Frame = +3
Query: 309 GVLGILGNLPLLDILKAGGNTPXXXXXXXXXXXXXTIPLLNDIVDLQITDPQLLELGLVQ 488
G+LGIL N+PLLD++K+GG ++PLLN+I+D++ITDPQLLELGLVQ
Sbjct: 88 GLLGILENIPLLDVIKSGGGNSNGLVGGLLGKLTSSVPLLNNILDIKITDPQLLELGLVQ 147
Query: 489 SPDGHRLYVTIPLSLVLNVKTSVVGSLLKLAVKLNITVELLAVKDEQGKSHLVLGDCTHS 668
SPDGHRLYVTIPL L LNV VVGSLL+LAVKLNIT E+LAVKD QG+ HLVLGDCTHS
Sbjct: 148 SPDGHRLYVTIPLGLTLNVNMPVVGSLLQLAVKLNITAEVLAVKDNQGRIHLVLGDCTHS 207
Query: 669 PGSLKISLLDGLGPLVPQDLLDSITGVLDNVLPGLVQGEVCPLVNEVLSHLDVTLVHSIV 848
PGSLKISLL+G+ P+ Q LD++TG+L VLP L+QG+VCPLVN +LS LDVTLVH+I
Sbjct: 208 PGSLKISLLNGVTPV--QSFLDNLTGILTKVLPELIQGKVCPLVNGILSGLDVTLVHNIA 265
Query: 849 DALIQGQEFVIKV 887
+ LI G +FVIKV
Sbjct: 266 ELLIHGLQFVIKV 278
>ref|NP_080266.2| palate lung and nasal carcinoma-like protein precursor [Mus
musculus].
Length = 270
Score = 205 bits (521), Expect = 6e-53
Identities = 108/192 (56%), Positives = 143/192 (74%)
Frame = +3
Query: 309 GVLGILGNLPLLDILKAGGNTPXXXXXXXXXXXXXTIPLLNDIVDLQITDPQLLELGLVQ 488
G+L L ++PLL+ ++ G+ +IPLLN+I+D+++T+PQLLE+GLVQ
Sbjct: 81 GILSFLEHIPLLNYVRPTGSNAGGLVGVLGKVIS-SIPLLNNILDIRVTNPQLLEIGLVQ 139
Query: 489 SPDGHRLYVTIPLSLVLNVKTSVVGSLLKLAVKLNITVELLAVKDEQGKSHLVLGDCTHS 668
S D HRLYVTIPL L V T VVGSLL+L+VKL++T E+ AV+D G+S LV+GDC +
Sbjct: 140 SYDFHRLYVTIPLGFDLRVNTLVVGSLLELSVKLDVTAEVYAVRDSYGRSRLVIGDCIYP 199
Query: 669 PGSLKISLLDGLGPLVPQDLLDSITGVLDNVLPGLVQGEVCPLVNEVLSHLDVTLVHSIV 848
PGSL+ISLL+ LGPL Q+L+DS+T +L V+PGLVQG VCPLVN VLS LDVTL H +
Sbjct: 200 PGSLRISLLNRLGPL--QNLIDSLTDILTRVIPGLVQGVVCPLVNGVLSLLDVTLAHDVA 257
Query: 849 DALIQGQEFVIK 884
DAL++G +FVIK
Sbjct: 258 DALLRGVQFVIK 269
>ref|NP_001012392.1| long palate, lung and nasal epithelium carcinoma-associated protein
1 isoform 1 [Mus musculus].
Length = 474
Score = 62.8 bits (151), Expect = 5e-10
Identities = 32/133 (24%), Positives = 69/133 (51%)
Frame = +3
Query: 423 LLNDIVDLQITDPQLLELGLVQSPDGHRLYVTIPLSLVLNVKTSVVGSLLKLAVKLNITV 602
+L I+ +++T +L+L + S L V IPL +V + T ++ ++++ + +
Sbjct: 79 VLRYIIWMKVTSANILQLDVQPSTYDQELVVRIPLDMVAGLNTPLIKTIVEFQMSTEVQA 138
Query: 603 ELLAVKDEQGKSHLVLGDCTHSPGSLKISLLDGLGPLVPQDLLDSITGVLDNVLPGLVQG 782
+ + + G +HL L DC+ + +L++SLL L V L ++ +L LP +V+
Sbjct: 139 LIRVERSKSGPAHLNLSDCSSNESTLRLSLLHKLS-FVVNSLAKNVMNLLVPALPQIVKN 197
Query: 783 EVCPLVNEVLSHL 821
+CP++ + +
Sbjct: 198 HLCPVIQQAFDDM 210
>ref|NP_700467.2| long palate, lung and nasal epithelium carcinoma-associated protein
1 isoform 2 [Mus musculus].
Length = 474
Score = 62.8 bits (151), Expect = 5e-10
Identities = 32/133 (24%), Positives = 69/133 (51%)
Frame = +3
Query: 423 LLNDIVDLQITDPQLLELGLVQSPDGHRLYVTIPLSLVLNVKTSVVGSLLKLAVKLNITV 602
+L I+ +++T +L+L + S L V IPL +V + T ++ ++++ + +
Sbjct: 79 VLRYIIWMKVTSANILQLDVQPSTYDQELVVRIPLDMVAGLNTPLIKTIVEFQMSTEVQA 138
Query: 603 ELLAVKDEQGKSHLVLGDCTHSPGSLKISLLDGLGPLVPQDLLDSITGVLDNVLPGLVQG 782
+ + + G +HL L DC+ + +L++SLL L V L ++ +L LP +V+
Sbjct: 139 LIRVERSKSGPAHLNLSDCSSNESTLRLSLLHKLS-FVVNSLAKNVMNLLVPALPQIVKN 197
Query: 783 EVCPLVNEVLSHL 821
+CP++ + +
Sbjct: 198 HLCPVIQQAFDDM 210
>ref|NP_082804.1| short palate, lung and nasal epithelium carcinoma-associated
protein 3 homolog [Mus musculus].
Length = 239
Score = 60.1 bits (144), Expect = 3e-09
Identities = 39/138 (28%), Positives = 64/138 (46%)
Frame = +3
Query: 438 VDLQITDPQLLELGLVQSPDGHRLYVTIPLSLVLNVKTSVVGSLLKLAVKLNITVELLAV 617
+ + IT+ QL G+ + I L + K +++K + +T E
Sbjct: 92 ISINITNVQLDCGGIQMAFPKEWFSANITLEFDIEFKLPFNSNIIKTHACMGLTAESWLE 151
Query: 618 KDEQGKSHLVLGDCTHSPGSLKISLLDGLGPLVPQDLLDSITGVLDNVLPGLVQGEVCPL 797
KDE G+ LV+G C P S S+ + L ++ L V+P LV+ +VCPL
Sbjct: 152 KDEFGRRELVMGRCRMEPSSGGASMSTEETSPKMKHFLHNLRESLGKVIPNLVESQVCPL 211
Query: 798 VNEVLSHLDVTLVHSIVD 851
+ E+L LDV L+ +V+
Sbjct: 212 IGEILRQLDVKLLKGLVE 229
>ref|NP_032979.1| parotid secretory protein precursor [Mus musculus].
Length = 235
Score = 59.7 bits (143), Expect = 4e-09
Identities = 36/144 (25%), Positives = 82/144 (56%), Gaps = 2/144 (1%)
Frame = +3
Query: 444 LQITDPQLLELGLVQSPDGHRLYVTIPLSLVLNVKTSVVGSLLKLAVKLNITVELLAVKD 623
L+I + ++L+ S +G+ + +T+PL+ ++ +G + ++V L++ + L++K
Sbjct: 89 LKINNLKVLDFQAKLSSNGNGIDLTVPLAGEASLVLPFIGKTVDISVSLDL-INSLSIKT 147
Query: 624 --EQGKSHLVLGDCTHSPGSLKISLLDGLGPLVPQDLLDSITGVLDNVLPGLVQGEVCPL 797
+ G + +G C+ + + ISLL P++ +LD ++ +L + L ++Q +CPL
Sbjct: 148 NAQTGLPEVTIGKCSSNTDKISISLLGRRLPII-NSILDGVSTLLTSTLSTVLQNFLCPL 206
Query: 798 VNEVLSHLDVTLVHSIVDALIQGQ 869
+ VLS L+ +++ ++ L+ GQ
Sbjct: 207 LQYVLSTLNPSVLQGLLSNLLAGQ 230
>ref|NP_659139.2| long palate lung and nasal epithelium protein 5 [Mus musculus].
Length = 490
Score = 52.4 bits (124), Expect = 7e-07
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Frame = +3
Query: 609 LAVKDEQ--GKSHLVLGDCTHSPGSLKISLLDGLGPLVPQDLLDSITGVLDNVLPGLVQG 782
+ V+ EQ K+ + +C PGSL I +L L+P LL +T L+ LP L+Q
Sbjct: 156 IGVRLEQIGNKTQVAFEECHTPPGSLNIKILKRSDTLLPNQLLKLVTNTLEKSLPFLLQK 215
Query: 783 EVCPLVNEVLSHLDVTLVHSIVDALIQGQE 872
VCP+ +++ L ++H I+ +I G +
Sbjct: 216 IVCPVATNLINFLLEDILHIILPPIISGPD 245
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,156,547
Number of extensions: 1254280
Number of successful extensions: 7805
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 7636
Number of HSP's successfully gapped: 7
Length of query: 379
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 276
Effective length of database: 12,523,851
Effective search space: 3456582876
Effective search space used: 3456582876
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001579
(1139 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001005727.1| protein Plunc precursor [Sus scrofa]. 369 e-102
Alignment gi|NP_001094502.1| long palate, lung and nasal epithelium carci... 77 1e-14
Alignment gi|NP_998932.1| short palate, lung and nasal epithelium carcino... 67 2e-11
Alignment gi|NP_001230184.1| BPI fold containing family A, member 3 [Sus ... 64 2e-10
Alignment gi|NP_001094503.1| long palate lung and nasal epithelium protei... 50 2e-06
>ref|NP_001005727.1| protein Plunc precursor [Sus scrofa].
Length = 249
Score = 369 bits (947), Expect = e-102
Identities = 200/249 (80%), Positives = 200/249 (80%)
Frame = +3
Query: 141 MSQVAGLIVFCGXXXXXXXXXXXXXXXXXXXXXXDQSPTDLVXXXXXXXXXXXXXEGVLG 320
M QVAGLIVFCG DQSPTDLV EGVLG
Sbjct: 1 MFQVAGLIVFCGLLAQTTALLEALPLGKALPLALDQSPTDLVGSLTSTLSNGLLSEGVLG 60
Query: 321 ILGNLPLLDILKAGGNTPXXXXXXXXXXXXXTIPLLNDIVDLQITDPQLLELGLVQSPDG 500
ILGNLPLLDILKAGGNTP TIPLLNDIVDLQITDPQLLELGLVQSPDG
Sbjct: 61 ILGNLPLLDILKAGGNTPSGLLGGLLGKLSSTIPLLNDIVDLQITDPQLLELGLVQSPDG 120
Query: 501 HRLYVTIPLSLVLNVKTSVVGSLLKLAVKLNITVELLAVKDEQGKSHLVLGDCTHSPGSL 680
HRLYVTIPLSLVLNVKTSVVGSLLKLAVKLNITVELLAVKDEQGKSHLVLGDCTHSPGSL
Sbjct: 121 HRLYVTIPLSLVLNVKTSVVGSLLKLAVKLNITVELLAVKDEQGKSHLVLGDCTHSPGSL 180
Query: 681 KISLLDGLGPLVPQDLLDSITGVLDNVLPGLVQGEVCPLVNEVLSHLDVTLVHSIVDALI 860
KISLLDGLGPLVPQDLLDSITGVLDNVLPGLVQGEVCPLVNEVLSHLDVTLVHSIVDALI
Sbjct: 181 KISLLDGLGPLVPQDLLDSITGVLDNVLPGLVQGEVCPLVNEVLSHLDVTLVHSIVDALI 240
Query: 861 QGQEFVIKV 887
QGQEFVIKV
Sbjct: 241 QGQEFVIKV 249
>ref|NP_001094502.1| long palate, lung and nasal epithelium carcinoma-associated protein
1 precursor [Sus scrofa].
Length = 472
Score = 77.4 bits (189), Expect = 1e-14
Identities = 48/175 (27%), Positives = 90/175 (51%)
Frame = +3
Query: 321 ILGNLPLLDILKAGGNTPXXXXXXXXXXXXXTIPLLNDIVDLQITDPQLLELGLVQSPDG 500
+L LPLLD ++ +L I L++T +L+L + P+G
Sbjct: 52 VLQQLPLLDAMQESSQ---------GVLARLVSSILKYITWLKVTSASILQLQVQPLPNG 102
Query: 501 HRLYVTIPLSLVLNVKTSVVGSLLKLAVKLNITVELLAVKDEQGKSHLVLGDCTHSPGSL 680
L V IPL +V + T +V ++++L +++ + + E G+ LVL +C+++ GSL
Sbjct: 103 QELLVKIPLDMVAGLNTPLVKTIVELHMQVEVEAIIHVETSETGEDQLVLSNCSNTRGSL 162
Query: 681 KISLLDGLGPLVPQDLLDSITGVLDNVLPGLVQGEVCPLVNEVLSHLDVTLVHSI 845
+ISLL L L+ + + + +L LP +V+GE+CP++ E + L++ +
Sbjct: 163 RISLLHKLSFLL-NSIAEKVIKLLVPALPKVVKGELCPVLREAFEDVRADLLNLV 216
>ref|NP_998932.1| short palate, lung and nasal epithelium carcinoma-associated
protein 2 precursor [Sus scrofa].
Length = 238
Score = 66.6 bits (161), Expect = 2e-11
Identities = 37/139 (26%), Positives = 83/139 (59%), Gaps = 1/139 (0%)
Frame = +3
Query: 444 LQITDPQLLELGLVQSPDGHRLYVTIPLSLVLNVKTSVVGSLLKLAVKLNITVELLAVKD 623
L+I++ +L+ + + DG + + +P++ +++ ++G ++ L + L++ + D
Sbjct: 98 LKISNLHILDAKVKLTADGKGISLNLPITANVSLTLPLLGQVVDLDLNLDLLTSVTIETD 157
Query: 624 EQ-GKSHLVLGDCTHSPGSLKISLLDGLGPLVPQDLLDSITGVLDNVLPGLVQGEVCPLV 800
+ G S + LG+C P S+ ++LLD LV + ++S+ VL V+ +VQ EVCP++
Sbjct: 158 AKTGVSTVTLGECASDPASISLTLLDRRRALVNR-AVNSVIKVLRKVVSLVVQKEVCPMI 216
Query: 801 NEVLSHLDVTLVHSIVDAL 857
+++ +L +L+ +I+D+L
Sbjct: 217 QKLVENLGASLLKNIIDSL 235
>ref|NP_001230184.1| BPI fold containing family A, member 3 [Sus scrofa].
Length = 238
Score = 63.5 bits (153), Expect = 2e-10
Identities = 39/135 (28%), Positives = 75/135 (55%), Gaps = 1/135 (0%)
Frame = +3
Query: 450 ITDPQLLELGLVQSPDGHRLYVTIPLSLVLNVKTSVVGSLLKLAVKLNITVELLAVKDEQ 629
IT+ QL G+ S I L ++++ ++K V++N+ VE KD+
Sbjct: 95 ITNIQLDCGGIRMSFHKEWFLANISLEFDVDLRLPFNKQIVKTHVRMNLAVEFWLEKDQF 154
Query: 630 GKSHLVLGDCTHSPGSLKISLL-DGLGPLVPQDLLDSITGVLDNVLPGLVQGEVCPLVNE 806
G+ L +G+C P S++ ++L + + P + + L ++ L V+P L++ +VCPL++E
Sbjct: 155 GRRDLAMGNCRVEPSSVRTTVLTEDISPKM-KHFLRNLREKLAKVIPHLIESQVCPLMDE 213
Query: 807 VLSHLDVTLVHSIVD 851
+L LDV L+ S+++
Sbjct: 214 ILRQLDVKLLKSLME 228
>ref|NP_001094503.1| long palate lung and nasal epithelium protein 5 [Sus scrofa].
Length = 492
Score = 50.4 bits (119), Expect = 2e-06
Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 2/147 (1%)
Frame = +3
Query: 438 VDLQITDPQLLELGLVQSPDGHRLYVTIPLSLVLNVKTSVVGSLLKLAVKLNITVELLAV 617
V LQI LL++ L ++LY+++ +L+ V NI + V
Sbjct: 120 VTLQILSDSLLQITL-----RNKLYLSLQ-------------RILRFKVIKNIRI---GV 158
Query: 618 KDEQ--GKSHLVLGDCTHSPGSLKISLLDGLGPLVPQDLLDSITGVLDNVLPGLVQGEVC 791
+ EQ K+++ +C PG L I +L+ +G L+ + L T VLD LP L+Q VC
Sbjct: 159 RLEQIGNKTNVAFEECHTPPGFLNIEVLEHMGLLLVNEALKLATDVLDKALPFLLQKIVC 218
Query: 792 PLVNEVLSHLDVTLVHSIVDALIQGQE 872
PL +L+ L L+H + I E
Sbjct: 219 PLATTLLNLLLEDLLHITLPPTISDPE 245
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,086,049
Number of extensions: 1005896
Number of successful extensions: 6232
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6152
Number of HSP's successfully gapped: 5
Length of query: 379
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 278
Effective length of database: 8,829,335
Effective search space: 2454555130
Effective search space used: 2454555130
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001579
(1139 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 317 7e-84
>Sscrofa_Chr17
|| Length = 69701581
Score = 317 bits (160), Expect = 7e-84
Identities = 160/160 (100%)
Strand = Plus / Plus
Query: 283 ctctcagcaatggcctgctctctgagggtgtgctgggcattcttggaaaccttccactct 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41706858 ctctcagcaatggcctgctctctgagggtgtgctgggcattcttggaaaccttccactct 41706917
Query: 343 tggacatcctgaaggctggagggaacactcccagtggcctgctgggaggcctgcttggga 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41706918 tggacatcctgaaggctggagggaacactcccagtggcctgctgggaggcctgcttggga 41706977
Query: 403 aactgtcctcaacgatccctctcctgaacgacatcgttga 442
||||||||||||||||||||||||||||||||||||||||
Sbjct: 41706978 aactgtcctcaacgatccctctcctgaacgacatcgttga 41707017
Score = 311 bits (157), Expect = 5e-82
Identities = 157/157 (100%)
Strand = Plus / Plus
Query: 126 cagacatcaagagagatgtctcaagttgcaggcctcattgtcttctgtgggctgctggcc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41706528 cagacatcaagagagatgtctcaagttgcaggcctcattgtcttctgtgggctgctggcc 41706587
Query: 186 cagaccacagcgctgctggaagccctgcccctgggcaaggctctgcccttggccctggac 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41706588 cagaccacagcgctgctggaagccctgcccctgggcaaggctctgcccttggccctggac 41706647
Query: 246 caaagtcccacagatcttgttggaagcttgacaagta 282
|||||||||||||||||||||||||||||||||||||
Sbjct: 41706648 caaagtcccacagatcttgttggaagcttgacaagta 41706684
Score = 297 bits (150), Expect = 7e-78
Identities = 150/150 (100%)
Strand = Plus / Plus
Query: 551 gtctgtggtcggaagtctgctaaagctggccgtgaagctcaacatcactgtagaactctt 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41709131 gtctgtggtcggaagtctgctaaagctggccgtgaagctcaacatcactgtagaactctt 41709190
Query: 611 agctgtgaaagacgaacaggggaagagccacctggtccttggtgactgcactcactcccc 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41709191 agctgtgaaagacgaacaggggaagagccacctggtccttggtgactgcactcactcccc 41709250
Query: 671 tggcagcctgaaaatctccctgcttgatgg 700
||||||||||||||||||||||||||||||
Sbjct: 41709251 tggcagcctgaaaatctccctgcttgatgg 41709280
Score = 218 bits (110), Expect = 5e-54
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 443 tctgcagatcactgatccccagctgctggaactcggccttgtgcagagccccgatggcca 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41708433 tctgcagatcactgatccccagctgctggaactcggccttgtgcagagccccgatggcca 41708492
Query: 503 tcgtctctatgtcaccatccctctgagtctggtcctcaatgtgaaaacgt 552
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41708493 tcgtctctatgtcaccatccctctgagtctggtcctcaatgtgaaaacgt 41708542
Score = 202 bits (102), Expect = 3e-49
Identities = 170/191 (89%), Gaps = 3/191 (1%)
Strand = Plus / Plus
Query: 925 ggaccatttcctgctgccccatccactccctgcccagcacccgaaggctcacaaaaggcc 984
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 41711759 ggaccatttcctgctgccccatccactccctgcccagcacccgagggctcacagaaggcc 41711818
Query: 985 agcccatgtcccggaaaaggaccccaggtctggaaacca-aacaannnnnnntccaagaa 1043
||||||||||||||| |||||| ||||||||||| |||| | || |||||| |
Sbjct: 41711819 agcccatgtcccggacaaggacaccaggtctggagaccagagcagcccgccctccaagga 41711878
Query: 1044 accgctccccctgcttcccca-caagcatgtgtgaca-tccctggtacttgcccaataaa 1101
||||||||||||||||||||| || |||||||||||| |||||| ||||||| |||||||
Sbjct: 41711879 accgctccccctgcttccccaccaggcatgtgtgacattccctgttacttgcgcaataaa 41711938
Query: 1102 atcgccctttc 1112
|||||||||||
Sbjct: 41711939 atcgccctttc 41711949
Score = 174 bits (88), Expect = 7e-41
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 700 gattgggccccctcgtccctcaagaccttcttgacagcatcactggagtcttggataatg 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41709756 gattgggccccctcgtccctcaagaccttcttgacagcatcactggagtcttggataatg 41709815
Query: 760 tccttcctgggctggtgcagggcgaggt 787
||||||||||||||||||||||||||||
Sbjct: 41709816 tccttcctgggctggtgcagggcgaggt 41709843
Score = 131 bits (66), Expect = 9e-28
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 784 aggtgtgccctctggtcaatgaggttctcagccacttggacgtcaccttggtacattcca 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41710709 aggtgtgccctctggtcaatgaggttctcagccacttggacgtcaccttggtacattcca 41710768
Query: 844 tcgtcg 849
||||||
Sbjct: 41710769 tcgtcg 41710774
Score = 117 bits (59), Expect = 1e-23
Identities = 76/79 (96%), Gaps = 2/79 (2%)
Strand = Plus / Plus
Query: 849 gacgcgctaatccaagggcaggaatttgtcatcaaagtctaagccctcccagcaggggac 908
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 41711151 gacgcgctaatccaagggcaggaatttgtcatcaaagtctaagccct-ccagcaagggac 41711209
Query: 909 ct-ccctctcctgagctgg 926
|| ||||||||||||||||
Sbjct: 41711210 ctcccctctcctgagctgg 41711228
Score = 99.6 bits (50), Expect = 3e-18
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 79 aagccaggaagaggagaccaggacagccaccaaaacctctgggaagtcag 128
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41704947 aagccaggaagaggagaccaggacagccaccaaaacctctgggaagtcag 41704996
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,648,983
Number of extensions: 259
Number of successful extensions: 259
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 258
Number of HSP's successfully gapped: 10
Length of query: 1139
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1118
Effective length of database: 2,808,413,156
Effective search space: 3139805908408
Effective search space used: 3139805908408
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)