Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001588
(1860 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095345.2| thioredoxin interacting protein [Bos taurus]. 351 1e-96
Alignment gi|NP_001178963.1| arrestin domain-containing protein 4 [Bos ta... 171 3e-42
Alignment gi|XP_002696551.1| PREDICTED: arrestin domain containing 4 [Bos... 171 3e-42
Alignment gi|NP_001069725.1| arrestin domain-containing protein 3 [Bos ta... 154 2e-37
Alignment gi|NP_001075061.1| arrestin domain-containing protein 2 [Bos ta... 138 2e-32
>ref|NP_001095345.2| thioredoxin interacting protein [Bos taurus].
Length = 391
Score = 351 bits (900), Expect = 1e-96
Identities = 175/211 (82%), Positives = 180/211 (85%)
Frame = +1
Query: 103 SALLAYWGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 282
SA + GFCEGDEINIHADFENTCSRIV+PKAAIVARHTYLANGQTKVLTQKLSSVRGN
Sbjct: 181 SARIDRKGFCEGDEINIHADFENTCSRIVIPKAAIVARHTYLANGQTKVLTQKLSSVRGN 240
Query: 283 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVIXXXX 462
HIISGTCASWRGKSLRVQKIRPSILGCNILRVEY LLIYVSVPGSKKVILDLPLVI
Sbjct: 241 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYSLLIYVSVPGSKKVILDLPLVIGSRS 300
Query: 463 XXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDDTDGSQD 642
WVDLNIPDT EAPPCYMD I EDHRLESPTTPLL+DTDGSQD
Sbjct: 301 GLSSRTSSMASQTSSEMSWVDLNIPDTLEAPPCYMDSIAEDHRLESPTTPLLEDTDGSQD 360
Query: 643 SPIFMYAPEFKFMPPPTYSEVDPCILNNNVQ 735
SPIFMYAPEF+FMPPPTYSEVDP +LNNNVQ
Sbjct: 361 SPIFMYAPEFRFMPPPTYSEVDPSVLNNNVQ 391
>ref|NP_001178963.1| arrestin domain-containing protein 4 [Bos taurus].
Length = 413
Score = 171 bits (432), Expect = 3e-42
Identities = 86/206 (41%), Positives = 124/206 (60%), Gaps = 3/206 (1%)
Frame = +1
Query: 103 SALLAYWGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 282
SA + G+C G+ I I+A+ EN SR++VPKAAI TYLA+G+TK + +++VRGN
Sbjct: 193 SAKIERKGYCNGEAIPIYAEIENCSSRLIVPKAAIFQTQTYLASGKTKTVRLMVANVRGN 252
Query: 283 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI--XX 456
HI SG+ +W GK+L++ + PSIL C I+RV Y L +Y+ +PG+KK++L+LPLVI
Sbjct: 253 HIASGSTDTWNGKTLKIPPVTPSILDCCIIRVHYSLAVYIHIPGAKKLMLELPLVIGTVP 312
Query: 457 XXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLES-PTTPLLDDTDG 633
W+ L +P+ PEAPP Y D++ E+ + P P + +G
Sbjct: 313 YNGFGSRNSSVASQFIMDMSWLTLTLPEQPEAPPNYADVVSEEEFSQHVPPYPQPPNCEG 372
Query: 634 SQDSPIFMYAPEFKFMPPPTYSEVDP 711
P+F EF+F PPP YSEVDP
Sbjct: 373 ESCCPMFACIQEFRFQPPPLYSEVDP 398
>ref|XP_002696551.1| PREDICTED: arrestin domain containing 4 [Bos taurus].
Length = 413
Score = 171 bits (432), Expect = 3e-42
Identities = 86/206 (41%), Positives = 124/206 (60%), Gaps = 3/206 (1%)
Frame = +1
Query: 103 SALLAYWGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 282
SA + G+C G+ I I+A+ EN SR++VPKAAI TYLA+G+TK + +++VRGN
Sbjct: 193 SAKIERKGYCNGEAIPIYAEIENCSSRLIVPKAAIFQTQTYLASGKTKTVRLMVANVRGN 252
Query: 283 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI--XX 456
HI SG+ +W GK+L++ + PSIL C I+RV Y L +Y+ +PG+KK++L+LPLVI
Sbjct: 253 HIASGSTDTWNGKTLKIPPVTPSILDCCIIRVHYSLAVYIHIPGAKKLMLELPLVIGTVP 312
Query: 457 XXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLES-PTTPLLDDTDG 633
W+ L +P+ PEAPP Y D++ E+ + P P + +G
Sbjct: 313 YNGFGSRNSSVASQFIMDMSWLTLTLPEQPEAPPNYADVVSEEEFSQHVPPYPQPPNCEG 372
Query: 634 SQDSPIFMYAPEFKFMPPPTYSEVDP 711
P+F EF+F PPP YSEVDP
Sbjct: 373 ESCCPMFACIQEFRFQPPPLYSEVDP 398
>ref|NP_001069725.1| arrestin domain-containing protein 3 [Bos taurus].
Length = 414
Score = 154 bits (390), Expect = 2e-37
Identities = 78/206 (37%), Positives = 118/206 (57%), Gaps = 3/206 (1%)
Frame = +1
Query: 103 SALLAYWGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 282
SA + G+ G+ I I A+ EN SR+VVPKAAI + A G+ K + Q ++++RG
Sbjct: 194 SAKIERKGYTPGESIQIFAEIENCSSRMVVPKAAIYQTQAFYAKGKMKEVKQLVANLRGE 253
Query: 283 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI--XX 456
+ SG +W GK L++ + PSIL C+I+RVEY L++YV +PG+ + L+LPLVI
Sbjct: 254 SLSSGKTETWNGKLLKIPPVSPSILDCSIIRVEYSLMVYVDIPGAMDLFLNLPLVIGTIP 313
Query: 457 XXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLES-PTTPLLDDTDG 633
W+ L++P+ PEAPP Y +++ E+ R + DD +
Sbjct: 314 LHPFGSRTSSVSSQCSMNMNWLGLSLPERPEAPPSYAEVVTEEQRRNNLAPGSACDDFER 373
Query: 634 SQDSPIFMYAPEFKFMPPPTYSEVDP 711
+ P+F Y EF+F+PPP YSE+DP
Sbjct: 374 ALQGPLFAYIQEFRFLPPPLYSEIDP 399
>ref|NP_001075061.1| arrestin domain-containing protein 2 [Bos taurus].
Length = 407
Score = 138 bits (347), Expect = 2e-32
Identities = 74/207 (35%), Positives = 113/207 (54%), Gaps = 4/207 (1%)
Frame = +1
Query: 103 SALLAYWGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 282
SA + G+ G+ I + A+ +N +R V+P+AA+V T++A G K ++S+ G
Sbjct: 187 SAKIDRKGYTPGEVIPVFAEIDNGSTRPVLPRAAVVQTQTFMARGARKQKRAVVASLSGE 246
Query: 283 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI--XX 456
+ G A W+G++LR+ + PSIL C +L V+Y L + V +PGS K++L+LPLVI
Sbjct: 247 PVGPGRRALWQGRALRIPPVGPSILHCRVLHVDYALKVCVDIPGSSKLLLELPLVIGTIP 306
Query: 457 XXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDH--RLESPTTPLLDDTD 630
W +P+ PEAPP Y +++P++ +E PLL D D
Sbjct: 307 LHPFGSRSSSVGSHASFLMDWGLGILPERPEAPPEYSEVVPDEEVAAMEQSLLPLLQDPD 366
Query: 631 GSQDSPIFMYAPEFKFMPPPTYSEVDP 711
S + P F Y EF++ PPP YSE DP
Sbjct: 367 MSMEGPFFAYIQEFRYRPPPLYSEEDP 393
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 65,002,494
Number of extensions: 1582497
Number of successful extensions: 3393
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3380
Number of HSP's successfully gapped: 5
Length of query: 620
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 512
Effective length of database: 14,107,870
Effective search space: 7223229440
Effective search space used: 7223229440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001588
(1860 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533037.2| PREDICTED: similar to thioredoxin interacting p... 359 6e-99
Alignment gi|XP_859453.1| PREDICTED: similar to thioredoxin interacting p... 344 2e-94
Alignment gi|XP_545831.2| PREDICTED: similar to arrestin domain containin... 170 5e-42
Alignment gi|XP_546029.1| PREDICTED: similar to arrestin domain containin... 151 2e-36
Alignment gi|XP_857636.1| PREDICTED: similar to arrestin domain containin... 137 3e-32
Alignment gi|XP_865525.1| PREDICTED: similar to arrestin domain containin... 126 6e-29
Alignment gi|XP_865505.1| PREDICTED: similar to arrestin domain containin... 126 6e-29
Alignment gi|XP_852327.1| PREDICTED: similar to arrestin domain containin... 126 6e-29
Alignment gi|XP_857476.1| PREDICTED: similar to arrestin domain containin... 105 1e-22
>ref|XP_533037.2| PREDICTED: similar to thioredoxin interacting protein isoform 2
[Canis familiaris].
Length = 391
Score = 359 bits (921), Expect = 6e-99
Identities = 178/211 (84%), Positives = 183/211 (86%)
Frame = +1
Query: 103 SALLAYWGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 282
SA + GFCEGDEI+IHADFENTCSRI+VPKAAIVARHTYLANGQTKVLTQKLSSVRGN
Sbjct: 181 SARIDRKGFCEGDEISIHADFENTCSRIMVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 240
Query: 283 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVIXXXX 462
HIISGTCASWRGKSLRVQKIRPSILGCNILRVEY LLIYVSVPGSKKVILDLPLVI
Sbjct: 241 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYSLLIYVSVPGSKKVILDLPLVIGSRS 300
Query: 463 XXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDDTDGSQD 642
W+DLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDDTDGSQD
Sbjct: 301 GLSSRTSSMASRTSSEMSWIDLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDDTDGSQD 360
Query: 643 SPIFMYAPEFKFMPPPTYSEVDPCILNNNVQ 735
SPIFMYAPEFKFMPPPTY+EVDP ILNNNVQ
Sbjct: 361 SPIFMYAPEFKFMPPPTYTEVDPSILNNNVQ 391
>ref|XP_859453.1| PREDICTED: similar to thioredoxin interacting protein isoform 3
[Canis familiaris].
Length = 385
Score = 344 bits (882), Expect = 2e-94
Identities = 173/211 (81%), Positives = 178/211 (84%)
Frame = +1
Query: 103 SALLAYWGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 282
SA + GFCEGDEI+IHADFENTCSRI+VPKAAIVARHTYLANGQTKVLTQKLSSVRGN
Sbjct: 181 SARIDRKGFCEGDEISIHADFENTCSRIMVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 240
Query: 283 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVIXXXX 462
HIISGTCASWRGKSLRVQKIRPSILGCNILR IYVSVPGSKKVILDLPLVI
Sbjct: 241 HIISGTCASWRGKSLRVQKIRPSILGCNILR------IYVSVPGSKKVILDLPLVIGSRS 294
Query: 463 XXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDDTDGSQD 642
W+DLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDDTDGSQD
Sbjct: 295 GLSSRTSSMASRTSSEMSWIDLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDDTDGSQD 354
Query: 643 SPIFMYAPEFKFMPPPTYSEVDPCILNNNVQ 735
SPIFMYAPEFKFMPPPTY+EVDP ILNNNVQ
Sbjct: 355 SPIFMYAPEFKFMPPPTYTEVDPSILNNNVQ 385
>ref|XP_545831.2| PREDICTED: similar to arrestin domain containing 4 [Canis
familiaris].
Length = 412
Score = 170 bits (430), Expect = 5e-42
Identities = 85/206 (41%), Positives = 123/206 (59%), Gaps = 3/206 (1%)
Frame = +1
Query: 103 SALLAYWGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 282
SA + G+C G+ I I+A+ EN SR++VPKAAI TYLA+G+TK + +++VRGN
Sbjct: 192 SAKIERKGYCNGEAIPIYAEIENCSSRLIVPKAAIFQTQTYLASGRTKSVRHMVANVRGN 251
Query: 283 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI--XX 456
HI SG +W GK+L++ + PSIL C I+RV+Y L +Y+ +PG+KK++L+LPLVI
Sbjct: 252 HIASGGTDTWNGKTLKIPPVTPSILDCCIIRVDYSLAVYIHIPGAKKLMLELPLVIGTIP 311
Query: 457 XXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLES-PTTPLLDDTDG 633
W+ L +P+ PEAPP Y D++ E+ P P + +G
Sbjct: 312 FNGFGSRNSSIASQFSMDMSWLTLTLPEQPEAPPNYADVVSEEEFCRHVPPYPQPPEGEG 371
Query: 634 SQDSPIFMYAPEFKFMPPPTYSEVDP 711
P+F EF+F PPP YSE+DP
Sbjct: 372 EACCPVFACIQEFRFQPPPLYSEIDP 397
>ref|XP_546029.1| PREDICTED: similar to arrestin domain containing 3 isoform 1 [Canis
familiaris].
Length = 414
Score = 151 bits (382), Expect = 2e-36
Identities = 77/206 (37%), Positives = 117/206 (56%), Gaps = 3/206 (1%)
Frame = +1
Query: 103 SALLAYWGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 282
SA + G+ G+ I I A+ EN SR+VVPKAAI + A G+ K + Q ++++RG
Sbjct: 194 SAKIERKGYTPGESIQIFAEIENCSSRMVVPKAAIYQTQAFYAKGKMKEVKQLVANLRGE 253
Query: 283 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI--XX 456
+ SG +W GK L++ + PSIL C+I+RVEY L++YV +PG+ + L+LPLVI
Sbjct: 254 SLSSGKTDTWNGKLLKIPPVSPSILDCSIIRVEYSLMVYVDIPGAMDLFLNLPLVIGTIP 313
Query: 457 XXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLES-PTTPLLDDTDG 633
W+ L++ + PEAPP Y +++ E+ R + DD +
Sbjct: 314 LHPFGSRTSSVSSQCSMNMNWLGLSLRERPEAPPSYAEVVTEEQRRNNLAPVSACDDFER 373
Query: 634 SQDSPIFMYAPEFKFMPPPTYSEVDP 711
+ P+F Y EF+F+PPP YSE+DP
Sbjct: 374 ALQGPLFAYIQEFRFLPPPLYSEIDP 399
>ref|XP_857636.1| PREDICTED: similar to arrestin domain containing 3 isoform 5 [Canis
familiaris].
Length = 408
Score = 137 bits (346), Expect = 3e-32
Identities = 74/206 (35%), Positives = 112/206 (54%), Gaps = 3/206 (1%)
Frame = +1
Query: 103 SALLAYWGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 282
SA + G+ G+ I I A+ EN SR+VVPKAAI + A G+ K + Q ++++RG
Sbjct: 194 SAKIERKGYTPGESIQIFAEIENCSSRMVVPKAAIYQTQAFYAKGKMKEVKQLVANLRGE 253
Query: 283 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI--XX 456
+ SG +W GK L++ + PSIL C+I+RV YV +PG+ + L+LPLVI
Sbjct: 254 SLSSGKTDTWNGKLLKIPPVSPSILDCSIIRV------YVDIPGAMDLFLNLPLVIGTIP 307
Query: 457 XXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLES-PTTPLLDDTDG 633
W+ L++ + PEAPP Y +++ E+ R + DD +
Sbjct: 308 LHPFGSRTSSVSSQCSMNMNWLGLSLRERPEAPPSYAEVVTEEQRRNNLAPVSACDDFER 367
Query: 634 SQDSPIFMYAPEFKFMPPPTYSEVDP 711
+ P+F Y EF+F+PPP YSE+DP
Sbjct: 368 ALQGPLFAYIQEFRFLPPPLYSEIDP 393
>ref|XP_865525.1| PREDICTED: similar to arrestin domain containing 2 isoform 1
isoform 3 [Canis familiaris].
Length = 407
Score = 126 bits (317), Expect = 6e-29
Identities = 71/207 (34%), Positives = 110/207 (53%), Gaps = 4/207 (1%)
Frame = +1
Query: 103 SALLAYWGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 282
SA + G+ G+ I + A+ +N +R V+P+AA+V T++A G K ++S+ G
Sbjct: 187 SAKIDRKGYTPGEVIPVFAEIDNGSTRPVLPRAAVVQTQTFMARGARKQKRAVVASLAGE 246
Query: 283 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI--XX 456
+ G A W+G++LR+ + PSIL C +L V+Y L + V +PG+ K++L+LPLVI
Sbjct: 247 PVGPGRRALWQGRALRIPPVGPSILHCRVLHVDYSLKVCVDIPGTSKLLLELPLVIGTIP 306
Query: 457 XXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDH--RLESPTTPLLDDTD 630
W P+ PEAPP Y +++ + + + P L DTD
Sbjct: 307 LHPFGSRSSSVGSHASFLLDWGLGAPPERPEAPPEYSEVVADGEVAAVGQSSFPPLQDTD 366
Query: 631 GSQDSPIFMYAPEFKFMPPPTYSEVDP 711
S + P F Y EF++ PPP YSE DP
Sbjct: 367 LSFEGPFFAYIQEFRYRPPPLYSEEDP 393
>ref|XP_865505.1| PREDICTED: similar to arrestin domain containing 2 isoform 1
isoform 2 [Canis familiaris].
Length = 407
Score = 126 bits (317), Expect = 6e-29
Identities = 71/207 (34%), Positives = 110/207 (53%), Gaps = 4/207 (1%)
Frame = +1
Query: 103 SALLAYWGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 282
SA + G+ G+ I + A+ +N +R V+P+AA+V T++A G K ++S+ G
Sbjct: 187 SAKIDRKGYTPGEVIPVFAEIDNGSTRPVLPRAAVVQTQTFMARGARKQKRAVVASLAGE 246
Query: 283 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI--XX 456
+ G A W+G++LR+ + PSIL C +L V+Y L + V +PG+ K++L+LPLVI
Sbjct: 247 PVGPGRRALWQGRALRIPPVGPSILHCRVLHVDYSLKVCVDIPGTSKLLLELPLVIGTIP 306
Query: 457 XXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDH--RLESPTTPLLDDTD 630
W P+ PEAPP Y +++ + + + P L DTD
Sbjct: 307 LHPFGSRSSSVGSHASFLLDWGLGAPPERPEAPPEYSEVVADGEVAAVGQSSFPPLQDTD 366
Query: 631 GSQDSPIFMYAPEFKFMPPPTYSEVDP 711
S + P F Y EF++ PPP YSE DP
Sbjct: 367 LSFEGPFFAYIQEFRYRPPPLYSEEDP 393
>ref|XP_852327.1| PREDICTED: similar to arrestin domain containing 2 isoform 2
isoform 1 [Canis familiaris].
Length = 402
Score = 126 bits (317), Expect = 6e-29
Identities = 71/207 (34%), Positives = 110/207 (53%), Gaps = 4/207 (1%)
Frame = +1
Query: 103 SALLAYWGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 282
SA + G+ G+ I + A+ +N +R V+P+AA+V T++A G K ++S+ G
Sbjct: 182 SAKIDRKGYTPGEVIPVFAEIDNGSTRPVLPRAAVVQTQTFMARGARKQKRAVVASLAGE 241
Query: 283 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI--XX 456
+ G A W+G++LR+ + PSIL C +L V+Y L + V +PG+ K++L+LPLVI
Sbjct: 242 PVGPGRRALWQGRALRIPPVGPSILHCRVLHVDYSLKVCVDIPGTSKLLLELPLVIGTIP 301
Query: 457 XXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDH--RLESPTTPLLDDTD 630
W P+ PEAPP Y +++ + + + P L DTD
Sbjct: 302 LHPFGSRSSSVGSHASFLLDWGLGAPPERPEAPPEYSEVVADGEVAAVGQSSFPPLQDTD 361
Query: 631 GSQDSPIFMYAPEFKFMPPPTYSEVDP 711
S + P F Y EF++ PPP YSE DP
Sbjct: 362 LSFEGPFFAYIQEFRYRPPPLYSEEDP 388
>ref|XP_857476.1| PREDICTED: similar to arrestin domain containing 3 isoform 2 [Canis
familiaris].
Length = 351
Score = 105 bits (263), Expect = 1e-22
Identities = 51/116 (43%), Positives = 76/116 (65%)
Frame = +1
Query: 103 SALLAYWGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 282
SA + G+ G+ I I A+ EN SR+VVPKAAI + A G+ K + Q ++++RG
Sbjct: 194 SAKIERKGYTPGESIQIFAEIENCSSRMVVPKAAIYQTQAFYAKGKMKEVKQLVANLRGE 253
Query: 283 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI 450
+ SG +W GK L++ + PSIL C+I+RVEY L++YV +PG+ + L+LPLVI
Sbjct: 254 SLSSGKTDTWNGKLLKIPPVSPSILDCSIIRVEYSLMVYVDIPGAMDLFLNLPLVI 309
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 67,715,106
Number of extensions: 1613503
Number of successful extensions: 3317
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 3303
Number of HSP's successfully gapped: 9
Length of query: 620
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 511
Effective length of database: 15,240,880
Effective search space: 7788089680
Effective search space used: 7788089680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001588
(1860 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006463.3| thioredoxin-interacting protein [Homo sapiens]. 362 e-100
Alignment gi|NP_899232.2| arrestin domain-containing protein 4 [Homo sapi... 172 9e-43
Alignment gi|NP_065852.1| arrestin domain-containing protein 3 [Homo sapi... 155 9e-38
Alignment gi|NP_056498.1| arrestin domain-containing protein 2 isoform 1 ... 129 7e-30
Alignment gi|NP_001020775.1| arrestin domain-containing protein 2 isoform... 129 7e-30
>ref|NP_006463.3| thioredoxin-interacting protein [Homo sapiens].
Length = 391
Score = 362 bits (928), Expect = e-100
Identities = 179/211 (84%), Positives = 183/211 (86%)
Frame = +1
Query: 103 SALLAYWGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 282
SA + GFCEGDEI+IHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN
Sbjct: 181 SARIDRKGFCEGDEISIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 240
Query: 283 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVIXXXX 462
HIISGTCASWRGKSLRVQKIRPSILGCNILRVEY LLIYVSVPGSKKVILDLPLVI
Sbjct: 241 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYSLLIYVSVPGSKKVILDLPLVIGSRS 300
Query: 463 XXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDDTDGSQD 642
WVDLNIPDTPEAPPCYMD+IPEDHRLESPTTPLLDD DGSQD
Sbjct: 301 GLSSRTSSMASRTSSEMSWVDLNIPDTPEAPPCYMDVIPEDHRLESPTTPLLDDMDGSQD 360
Query: 643 SPIFMYAPEFKFMPPPTYSEVDPCILNNNVQ 735
SPIFMYAPEFKFMPPPTY+EVDPCILNNNVQ
Sbjct: 361 SPIFMYAPEFKFMPPPTYTEVDPCILNNNVQ 391
>ref|NP_899232.2| arrestin domain-containing protein 4 [Homo sapiens].
Length = 418
Score = 172 bits (436), Expect = 9e-43
Identities = 86/206 (41%), Positives = 124/206 (60%), Gaps = 3/206 (1%)
Frame = +1
Query: 103 SALLAYWGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 282
SA + G+C G+ I I+A+ EN SR++VPKAAI TYLA+G+TK + +++VRGN
Sbjct: 198 SAKIERKGYCNGEAIPIYAEIENCSSRLIVPKAAIFQTQTYLASGKTKTIRHMVANVRGN 257
Query: 283 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI--XX 456
HI SG+ +W GK+L++ + PSIL C I+RV+Y L +Y+ +PG+KK++L+LPLVI
Sbjct: 258 HIASGSTDTWNGKTLKIPPVTPSILDCCIIRVDYSLAVYIHIPGAKKLMLELPLVIGTIP 317
Query: 457 XXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDH-RLESPTTPLLDDTDG 633
W+ L +P+ PEAPP Y D++ E+ P P + +G
Sbjct: 318 YNGFGSRNSSIASQFSMDMSWLTLTLPEQPEAPPNYADVVSEEEFSRHIPPYPQPPNCEG 377
Query: 634 SQDSPIFMYAPEFKFMPPPTYSEVDP 711
P+F EF+F PPP YSEVDP
Sbjct: 378 EVCCPVFACIQEFRFQPPPLYSEVDP 403
>ref|NP_065852.1| arrestin domain-containing protein 3 [Homo sapiens].
Length = 414
Score = 155 bits (393), Expect = 9e-38
Identities = 78/206 (37%), Positives = 118/206 (57%), Gaps = 3/206 (1%)
Frame = +1
Query: 103 SALLAYWGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 282
SA + G+ G+ I I A+ EN SR+VVPKAAI + A G+ K + Q ++++RG
Sbjct: 194 SAKIERKGYTPGESIQIFAEIENCSSRMVVPKAAIYQTQAFYAKGKMKEVKQLVANLRGE 253
Query: 283 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI--XX 456
+ SG +W GK L++ + PSIL C+I+RVEY L++YV +PG+ + L+LPLVI
Sbjct: 254 SLSSGKTETWNGKLLKIPPVSPSILDCSIIRVEYSLMVYVDIPGAMDLFLNLPLVIGTIP 313
Query: 457 XXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLES-PTTPLLDDTDG 633
W+ L++P+ PEAPP Y +++ E+ R + DD +
Sbjct: 314 LHPFGSRTSSVSSQCSMNMNWLSLSLPERPEAPPSYAEVVTEEQRRNNLAPVSACDDFER 373
Query: 634 SQDSPIFMYAPEFKFMPPPTYSEVDP 711
+ P+F Y EF+F+PPP YSE+DP
Sbjct: 374 ALQGPLFAYIQEFRFLPPPLYSEIDP 399
>ref|NP_056498.1| arrestin domain-containing protein 2 isoform 1 [Homo sapiens].
Length = 407
Score = 129 bits (325), Expect = 7e-30
Identities = 74/218 (33%), Positives = 115/218 (52%), Gaps = 4/218 (1%)
Frame = +1
Query: 103 SALLAYWGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 282
SA + G+ G+ I + A+ +N +R V+P+AA+V T++A G K ++S+ G
Sbjct: 187 SAKIDRKGYTPGEVIPVFAEIDNGSTRPVLPRAAVVQTQTFMARGARKQKRAVVASLAGE 246
Query: 283 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI--XX 456
+ G A W+G++LR+ + PSIL C +L V+Y L + V +PG+ K++L+LPLVI
Sbjct: 247 PVGPGQRALWQGRALRIPPVGPSILHCRVLHVDYALKVCVDIPGTSKLLLELPLVIGTIP 306
Query: 457 XXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDII--PEDHRLESPTTPLLDDTD 630
W +P+ PEAPP Y +++ E+ L PL D D
Sbjct: 307 LHPFGSRSSSVGSHASFLLDWRLGALPERPEAPPEYSEVVADTEEAALGQSPFPLPQDPD 366
Query: 631 GSQDSPIFMYAPEFKFMPPPTYSEVDPCILNNNVQ*TC 744
S + P F Y EF++ PPP YSE DP L +++ C
Sbjct: 367 MSLEGPFFAYIQEFRYRPPPLYSEEDPNPLLGDMRPRC 404
>ref|NP_001020775.1| arrestin domain-containing protein 2 isoform 2 [Homo sapiens].
Length = 402
Score = 129 bits (325), Expect = 7e-30
Identities = 74/218 (33%), Positives = 115/218 (52%), Gaps = 4/218 (1%)
Frame = +1
Query: 103 SALLAYWGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 282
SA + G+ G+ I + A+ +N +R V+P+AA+V T++A G K ++S+ G
Sbjct: 182 SAKIDRKGYTPGEVIPVFAEIDNGSTRPVLPRAAVVQTQTFMARGARKQKRAVVASLAGE 241
Query: 283 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI--XX 456
+ G A W+G++LR+ + PSIL C +L V+Y L + V +PG+ K++L+LPLVI
Sbjct: 242 PVGPGQRALWQGRALRIPPVGPSILHCRVLHVDYALKVCVDIPGTSKLLLELPLVIGTIP 301
Query: 457 XXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDII--PEDHRLESPTTPLLDDTD 630
W +P+ PEAPP Y +++ E+ L PL D D
Sbjct: 302 LHPFGSRSSSVGSHASFLLDWRLGALPERPEAPPEYSEVVADTEEAALGQSPFPLPQDPD 361
Query: 631 GSQDSPIFMYAPEFKFMPPPTYSEVDPCILNNNVQ*TC 744
S + P F Y EF++ PPP YSE DP L +++ C
Sbjct: 362 MSLEGPFFAYIQEFRYRPPPLYSEEDPNPLLGDMRPRC 399
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 66,728,327
Number of extensions: 1602928
Number of successful extensions: 3577
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3569
Number of HSP's successfully gapped: 5
Length of query: 620
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 511
Effective length of database: 14,704,088
Effective search space: 7513788968
Effective search space used: 7513788968
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001588
(1860 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_076208.2| thioredoxin-interacting protein isoform 2 [Mus ... 350 2e-96
Alignment gi|NP_001009935.1| thioredoxin-interacting protein isoform 1 [M... 350 2e-96
Alignment gi|NP_001036057.1| arrestin domain containing 4 isoform 1 [Mus ... 167 3e-41
Alignment gi|NP_001036056.1| arrestin domain-containing protein 3 [Mus mu... 154 3e-37
Alignment gi|NP_081836.1| arrestin domain-containing protein 2 [Mus muscu... 120 3e-27
Alignment gi|NP_079825.2| arrestin domain containing 4 isoform 2 [Mus mus... 100 5e-21
>ref|NP_076208.2| thioredoxin-interacting protein isoform 2 [Mus musculus].
Length = 396
Score = 350 bits (898), Expect = 2e-96
Identities = 171/209 (81%), Positives = 179/209 (85%)
Frame = +1
Query: 103 SALLAYWGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 282
SA + GFCEGD+I+IHADFENTCSRIVVPKAAIVARHTYLANGQTKV TQKLSSVRGN
Sbjct: 181 SARIDRKGFCEGDDISIHADFENTCSRIVVPKAAIVARHTYLANGQTKVFTQKLSSVRGN 240
Query: 283 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVIXXXX 462
HIISGTCASWRGKSLRVQKIRPSILGCNIL+VEY LLIYVSVPGSKKVILDLPLVI
Sbjct: 241 HIISGTCASWRGKSLRVQKIRPSILGCNILKVEYSLLIYVSVPGSKKVILDLPLVIGSRS 300
Query: 463 XXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDDTDGSQD 642
W+DLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDD D SQD
Sbjct: 301 GLSSRTSSMASRTSSEMSWIDLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDDVDDSQD 360
Query: 643 SPIFMYAPEFKFMPPPTYSEVDPCILNNN 729
SPIFMYAPEF+FMPPPTY+EVDPC+LNNN
Sbjct: 361 SPIFMYAPEFQFMPPPTYTEVDPCVLNNN 389
>ref|NP_001009935.1| thioredoxin-interacting protein isoform 1 [Mus musculus].
Length = 397
Score = 350 bits (898), Expect = 2e-96
Identities = 171/209 (81%), Positives = 179/209 (85%)
Frame = +1
Query: 103 SALLAYWGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 282
SA + GFCEGD+I+IHADFENTCSRIVVPKAAIVARHTYLANGQTKV TQKLSSVRGN
Sbjct: 182 SARIDRKGFCEGDDISIHADFENTCSRIVVPKAAIVARHTYLANGQTKVFTQKLSSVRGN 241
Query: 283 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVIXXXX 462
HIISGTCASWRGKSLRVQKIRPSILGCNIL+VEY LLIYVSVPGSKKVILDLPLVI
Sbjct: 242 HIISGTCASWRGKSLRVQKIRPSILGCNILKVEYSLLIYVSVPGSKKVILDLPLVIGSRS 301
Query: 463 XXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDDTDGSQD 642
W+DLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDD D SQD
Sbjct: 302 GLSSRTSSMASRTSSEMSWIDLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDDVDDSQD 361
Query: 643 SPIFMYAPEFKFMPPPTYSEVDPCILNNN 729
SPIFMYAPEF+FMPPPTY+EVDPC+LNNN
Sbjct: 362 SPIFMYAPEFQFMPPPTYTEVDPCVLNNN 390
>ref|NP_001036057.1| arrestin domain containing 4 isoform 1 [Mus musculus].
Length = 415
Score = 167 bits (423), Expect = 3e-41
Identities = 85/199 (42%), Positives = 119/199 (59%), Gaps = 3/199 (1%)
Frame = +1
Query: 124 GFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGNHIISGTC 303
G+C G+ I I+A+ EN SR+VVPKAAI TYLA+G+TK + +++VRGNHI SG+
Sbjct: 202 GYCNGEAIPIYAEIENCSSRLVVPKAAIFQTQTYLASGKTKTVRHMVANVRGNHIGSGST 261
Query: 304 ASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI--XXXXXXXXX 477
+W GK L++ + PSIL C I+RV+Y L +Y+ +PG+K+++L+LPLVI
Sbjct: 262 DTWNGKMLKIPPVTPSILDCCIIRVDYSLAVYIHIPGAKRLMLELPLVIGTIPYSGFGRR 321
Query: 478 XXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDH-RLESPTTPLLDDTDGSQDSPIF 654
W+ L +P+ PEAPP Y D++ E+ P P D DG +F
Sbjct: 322 NSSVASQFSMDMCWLALALPEQPEAPPNYADVVSEEEFSRHVPPYPQPSDCDGEACYSMF 381
Query: 655 MYAPEFKFMPPPTYSEVDP 711
EF+F PPP YSEVDP
Sbjct: 382 ACIQEFRFQPPPLYSEVDP 400
>ref|NP_001036056.1| arrestin domain-containing protein 3 [Mus musculus].
Length = 414
Score = 154 bits (388), Expect = 3e-37
Identities = 78/206 (37%), Positives = 117/206 (56%), Gaps = 3/206 (1%)
Frame = +1
Query: 103 SALLAYWGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 282
SA + G+ G+ I I A+ EN SR+VVPKAAI + A G+ K + Q ++++RG
Sbjct: 194 SAKIERKGYTPGESIQIFAEIENCSSRMVVPKAAIYQTQAFYAKGKMKEVKQLVANLRGE 253
Query: 283 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI--XX 456
+ SG +W GK L++ + PSIL C+I+RVEY L++YV +PG+ ++L LPLVI
Sbjct: 254 SLSSGKTETWNGKLLKIPPVSPSILDCSIIRVEYSLMVYVDIPGAMDLLLSLPLVIGTIP 313
Query: 457 XXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLES-PTTPLLDDTDG 633
W+ L +P+ PEAPP Y +++ E+ R + DD +
Sbjct: 314 LHPFGSRTSSVSSQCSMSMNWLALALPERPEAPPSYAEVVTEEQRRNNLAPVGACDDFER 373
Query: 634 SQDSPIFMYAPEFKFMPPPTYSEVDP 711
+ P+F Y EF+F+PPP YSE+DP
Sbjct: 374 ALQGPLFAYIQEFRFLPPPLYSEIDP 399
>ref|NP_081836.1| arrestin domain-containing protein 2 [Mus musculus].
Length = 407
Score = 120 bits (302), Expect = 3e-27
Identities = 71/207 (34%), Positives = 106/207 (51%), Gaps = 4/207 (1%)
Frame = +1
Query: 103 SALLAYWGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 282
SA + G+ G+ I I A+ +N +R V P+AA+V T++A G K ++SV G
Sbjct: 187 SAKIDRKGYTPGEVIPIFAEIDNGSTRAVQPRAALVQTQTFMARGARKQKRAVVASVDGE 246
Query: 283 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI--XX 456
+ A W G++LR+ + PSIL C +L V+Y L ++V +PGS K++L+LPLVI
Sbjct: 247 PVGPNRRALWPGRALRIPPVGPSILQCRVLSVDYSLKVFVDIPGSSKLLLELPLVIGTVP 306
Query: 457 XXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLESPTTP--LLDDTD 630
W + D PEAPP Y +++ E + + P LL D
Sbjct: 307 LHPLGSRSASVGSRASFLQDWGLCTMMDRPEAPPEYSEVVRESQLVCASPGPSSLLHDLG 366
Query: 631 GSQDSPIFMYAPEFKFMPPPTYSEVDP 711
+ + P F EF++ PPP YSE DP
Sbjct: 367 VTTEGPYFACLQEFRYCPPPLYSEEDP 393
>ref|NP_079825.2| arrestin domain containing 4 isoform 2 [Mus musculus].
Length = 296
Score = 100 bits (248), Expect = 5e-21
Identities = 46/91 (50%), Positives = 65/91 (71%)
Frame = +1
Query: 124 GFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGNHIISGTC 303
G+C G+ I I+A+ EN SR+VVPKAAI TYLA+G+TK + +++VRGNHI SG+
Sbjct: 202 GYCNGEAIPIYAEIENCSSRLVVPKAAIFQTQTYLASGKTKTVRHMVANVRGNHIGSGST 261
Query: 304 ASWRGKSLRVQKIRPSILGCNILRVEYFLLI 396
+W GK L++ + PSIL C I+RV+Y L +
Sbjct: 262 DTWNGKMLKIPPVTPSILDCCIIRVDYSLAV 292
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 56,984,181
Number of extensions: 1369077
Number of successful extensions: 3055
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3045
Number of HSP's successfully gapped: 6
Length of query: 620
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 513
Effective length of database: 12,403,707
Effective search space: 6363101691
Effective search space used: 6363101691
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001588
(1860 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001038079.1| thioredoxin-interacting protein [Sus scrofa]. 370 e-102
Alignment gi|XP_001924225.3| PREDICTED: arrestin domain-containing protei... 172 7e-43
Alignment gi|XP_003361822.1| PREDICTED: arrestin domain-containing protei... 155 7e-38
Alignment gi|XP_003123831.2| PREDICTED: arrestin domain-containing protei... 149 5e-36
Alignment gi|XP_003123552.1| PREDICTED: arrestin domain-containing protei... 130 3e-30
Alignment gi|XP_003123551.1| PREDICTED: arrestin domain-containing protei... 130 3e-30
>ref|NP_001038079.1| thioredoxin-interacting protein [Sus scrofa].
Length = 391
Score = 370 bits (951), Expect = e-102
Identities = 184/211 (87%), Positives = 185/211 (87%)
Frame = +1
Query: 103 SALLAYWGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 282
SA + GFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN
Sbjct: 181 SARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 240
Query: 283 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVIXXXX 462
HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI
Sbjct: 241 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVIGSRS 300
Query: 463 XXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDDTDGSQD 642
WVDLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDDTDGSQD
Sbjct: 301 GLSSRTSSMASRTSSEMSWVDLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDDTDGSQD 360
Query: 643 SPIFMYAPEFKFMPPPTYSEVDPCILNNNVQ 735
SPIFMYAPEFKFMPPPTYSEVDPCILNNNVQ
Sbjct: 361 SPIFMYAPEFKFMPPPTYSEVDPCILNNNVQ 391
>ref|XP_001924225.3| PREDICTED: arrestin domain-containing protein 4 isoform 1 [Sus
scrofa].
Length = 401
Score = 172 bits (435), Expect = 7e-43
Identities = 86/206 (41%), Positives = 124/206 (60%), Gaps = 3/206 (1%)
Frame = +1
Query: 103 SALLAYWGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 282
SA + G+C G+ I I+A+ EN SR++VPKAAI TYLA+G+TK + +++VRGN
Sbjct: 181 SAKIERKGYCNGEAIPIYAEIENCSSRLIVPKAAIFQTQTYLASGKTKTVRHMVANVRGN 240
Query: 283 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI--XX 456
HI SG+ +W GK+L++ + PSIL C I+RV+Y L +Y+ +PG+KK++L+LPLVI
Sbjct: 241 HIASGSTDTWNGKTLKIPPVTPSILDCCIIRVDYSLAVYIHIPGAKKLMLELPLVIGTVP 300
Query: 457 XXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDH-RLESPTTPLLDDTDG 633
W+ L +P+ PEAPP Y D++ E+ P P + +G
Sbjct: 301 YNGFGSRNSSIASQFIMDMSWLTLTLPEQPEAPPNYADVVSEEEFSRHVPPYPQPPNCEG 360
Query: 634 SQDSPIFMYAPEFKFMPPPTYSEVDP 711
P+F EF+F PPP YSEVDP
Sbjct: 361 DSCCPMFACIQEFRFQPPPLYSEVDP 386
>ref|XP_003361822.1| PREDICTED: arrestin domain-containing protein 3-like [Sus scrofa].
Length = 408
Score = 155 bits (392), Expect = 7e-38
Identities = 78/206 (37%), Positives = 118/206 (57%), Gaps = 3/206 (1%)
Frame = +1
Query: 103 SALLAYWGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 282
SA + G+ G+ I I A+ EN SR+VVPKAAI + A G+ K + Q ++++RG
Sbjct: 188 SAKIERKGYTPGESIQIFAEIENCSSRMVVPKAAIYQTQAFYAKGKMKEVKQLVANLRGE 247
Query: 283 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI--XX 456
+ SG +W GK L++ + PSIL C+I+RVEY L++YV +PG+ + L+LPLVI
Sbjct: 248 SLSSGKTETWNGKLLKIPPVSPSILDCSIIRVEYSLMVYVDIPGAMDLFLNLPLVIGTIP 307
Query: 457 XXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLES-PTTPLLDDTDG 633
W+ L++P+ PEAPP Y +++ E+ R + DD +
Sbjct: 308 LHPFGSRTSSVSSQCSMNINWLGLSLPERPEAPPSYAEVVTEEQRRNNLAPVSACDDFER 367
Query: 634 SQDSPIFMYAPEFKFMPPPTYSEVDP 711
+ P+F Y EF+F+PPP YSE+DP
Sbjct: 368 ALQGPLFAYIQEFRFLPPPLYSEIDP 393
>ref|XP_003123831.2| PREDICTED: arrestin domain-containing protein 3, partial [Sus
scrofa].
Length = 396
Score = 149 bits (376), Expect = 5e-36
Identities = 76/203 (37%), Positives = 115/203 (56%), Gaps = 3/203 (1%)
Frame = +1
Query: 103 SALLAYWGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 282
SA + G+ G+ I I A+ EN SR+VVPKAAI + A G+ K + Q ++++RG
Sbjct: 194 SAKIERKGYTPGESIQIFAEIENCSSRMVVPKAAIYQTQAFYAKGKMKEVKQLVANLRGE 253
Query: 283 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI--XX 456
+ SG +W GK L++ + PSIL C+I+RVEY L++YV +PG+ + L+LPLVI
Sbjct: 254 SLSSGKTETWNGKLLKIPPVSPSILDCSIIRVEYSLMVYVDIPGAMDLFLNLPLVIGTIP 313
Query: 457 XXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLES-PTTPLLDDTDG 633
W+ L++P+ PEAPP Y +++ E+ R + DD +
Sbjct: 314 LHPFGSRTSSVSSQCSMNINWLGLSLPERPEAPPSYAEVVTEEQRRNNLAPVSACDDFER 373
Query: 634 SQDSPIFMYAPEFKFMPPPTYSE 702
+ P+F Y EF+F+PPP YSE
Sbjct: 374 ALQGPLFAYIQEFRFLPPPLYSE 396
>ref|XP_003123552.1| PREDICTED: arrestin domain-containing protein 2 isoform 2 [Sus
scrofa].
Length = 406
Score = 130 bits (326), Expect = 3e-30
Identities = 72/211 (34%), Positives = 112/211 (53%), Gaps = 8/211 (3%)
Frame = +1
Query: 103 SALLAYWGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 282
SA + G+ G+ I + A+ +N +R V+P+AA+V T++A G K ++S+ G
Sbjct: 182 SAKIDRKGYTPGEVIPVFAEIDNGTTRPVLPRAAVVQTQTFMARGARKQKRAVVASLSGE 241
Query: 283 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI--XX 456
+ G A W+G++LR+ + PSIL C +L V+Y L + V +PGS K++L+LPLVI
Sbjct: 242 PVGPGRRALWQGRALRIPPVGPSILHCRVLHVDYALKVCVDIPGSSKLLLELPLVIGTIP 301
Query: 457 XXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDH------RLESPTTPLL 618
W +P+ PEAPP Y +++ +D +E PLL
Sbjct: 302 LHPFGSRSSSVGSHASFLLDWGLGVLPERPEAPPEYSEVVADDEMAAAAAAVEQSPFPLL 361
Query: 619 DDTDGSQDSPIFMYAPEFKFMPPPTYSEVDP 711
+ + S + P F Y EF++ PPP YSE DP
Sbjct: 362 QNPNMSPEGPFFAYIQEFRYRPPPLYSEEDP 392
>ref|XP_003123551.1| PREDICTED: arrestin domain-containing protein 2 isoform 1 [Sus
scrofa].
Length = 411
Score = 130 bits (326), Expect = 3e-30
Identities = 72/211 (34%), Positives = 112/211 (53%), Gaps = 8/211 (3%)
Frame = +1
Query: 103 SALLAYWGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 282
SA + G+ G+ I + A+ +N +R V+P+AA+V T++A G K ++S+ G
Sbjct: 187 SAKIDRKGYTPGEVIPVFAEIDNGTTRPVLPRAAVVQTQTFMARGARKQKRAVVASLSGE 246
Query: 283 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI--XX 456
+ G A W+G++LR+ + PSIL C +L V+Y L + V +PGS K++L+LPLVI
Sbjct: 247 PVGPGRRALWQGRALRIPPVGPSILHCRVLHVDYALKVCVDIPGSSKLLLELPLVIGTIP 306
Query: 457 XXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDH------RLESPTTPLL 618
W +P+ PEAPP Y +++ +D +E PLL
Sbjct: 307 LHPFGSRSSSVGSHASFLLDWGLGVLPERPEAPPEYSEVVADDEMAAAAAAVEQSPFPLL 366
Query: 619 DDTDGSQDSPIFMYAPEFKFMPPPTYSEVDP 711
+ + S + P F Y EF++ PPP YSE DP
Sbjct: 367 QNPNMSPEGPFFAYIQEFRYRPPPLYSEEDP 397
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 41,976,807
Number of extensions: 1039318
Number of successful extensions: 2164
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2155
Number of HSP's successfully gapped: 6
Length of query: 620
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 515
Effective length of database: 8,729,747
Effective search space: 4495819705
Effective search space used: 4495819705
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001588
(1860 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 1536 0.0
>Sscrofa_Chr04
|| Length = 143465943
Score = 1536 bits (775), Expect = 0.0
Identities = 867/912 (95%)
Strand = Plus / Plus
Query: 701 aggtggatccctgcatcctcaacaacaacgtgcagtgaacatgtggaaggaaagaagcag 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108994108 aggtggatccctgcatcctcaacaacaacgtgcagtgaacatgtggaaggaaagaagcag 108994167
Query: 761 ctatacctacttctttcttttcacctctcttcctggactgactttttaggagactcaaca 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108994168 ctatacctacttctttcttttcacctctcttcctggactgactttttaggagactcaaca 108994227
Query: 821 gtctctgcagtggggtacagatccaccccagcctctgactctccggtgtaggaggtgatc 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108994228 gtctctgcagtggggtacagatccaccccagcctctgactctccggtgtaggaggtgatc 108994287
Query: 881 atcaggcaatctcttgggccttaaagggtgcgcagtcgtcctcagccagtgagatgttgt 940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108994288 atcaggcaatctcttgggccttaaagggtgcgcagtcgtcctcagccagtgagatgttgt 108994347
Query: 941 gacaagggnnnnnnngctggatgggtttaaaaacacagacaaatttaggcccattccatt 1000
|||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108994348 gacaagggtttttttgctggatgggtttaaaaacacagacaaatttaggcccattccatt 108994407
Query: 1001 ttctcagatcttttttgagaattgaggcattttaaataaggggtagaaatggcctcctgg 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108994408 ttctcagatcttttttgagaattgaggcattttaaataaggggtagaaatggcctcctgg 108994467
Query: 1061 tgtggtcttcccaaggttttatggaggggatttcagactgttataacaatagatcttgaa 1120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108994468 tgtggtcttcccaaggttttatggaggggatttcagactgttataacaatagatcttgaa 108994527
Query: 1121 cctctgccatgtggagaaaagccaatttagcaaactagaagaatgaaaaggnnnnnnntc 1180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 108994528 cctctgccatgtggagaaaagccaatttagcaaactagaagaatgaaaaggaaaaaaatc 108994587
Query: 1181 atggccaaaactttgggaaaaagatgttcttaaaatcattgttcccctttgtttgtgcac 1240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 108994588 atggccaaaactttgggaaaaagatgttcttaaaatcattgttcccctttgtttgtacac 108994647
Query: 1241 ttatagatnnnnnnnnnnnnnnnnnnnnnntcctccagagcttatttggtttagagtgag 1300
|||||||| ||||||||||||||||||||||||||||||
Sbjct: 108994648 ttatagataaaagaaaacaaaaaagaaaaatcctccagagcttatttggtttagagtgag 108994707
Query: 1301 cttcccatgtgaattaaagggaagaagctctaaagttgtctttgtttagaaagtgcttta 1360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108994708 cttcccatgtgaattaaagggaagaagctctaaagttgtctttgtttagaaagtgcttta 108994767
Query: 1361 atgtggcgtaaagcagtagtaactatgccccaccaaaggtcttaaaaagccatttttaga 1420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108994768 atgtggcgtaaagcagtagtaactatgccccaccaaaggtcttaaaaagccatttttaga 108994827
Query: 1421 gcctattgcactgtgttcttctgttggcaaacattttcatgtgggaaaatgtgtttttct 1480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108994828 gcctattgcactgtgttcttctgttggcaaacattttcatgtgggaaaatgtgtttttct 108994887
Query: 1481 tctcacatgactccttggaattgattctgaggtgatggtcttagcactttagtttgtgtc 1540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108994888 tctcacatgactccttggaattgattctgaggtgatggtcttagcactttagtttgtgtc 108994947
Query: 1541 aaannnnnnncccctctatctcagatgtaagccaaaattggtctactgtgtctctggggt 1600
||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 108994948 aaatttttttcccctctatctcagatgtaagccaaaatcggtctactgtgtctctggggt 108995007
Query: 1601 aagcacaatgac 1612
||||||||||||
Sbjct: 108995008 aagcacaatgac 108995019
Score = 513 bits (259), Expect = e-142
Identities = 259/259 (100%)
Strand = Plus / Plus
Query: 135 aggtgatgagattaacatccatgctgattttgagaatacatgttcccgcattgtggtgcc 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108993197 aggtgatgagattaacatccatgctgattttgagaatacatgttcccgcattgtggtgcc 108993256
Query: 195 caaagctgccattgtagcccgccacacttaccttgccaatggccaaaccaaagtactgac 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108993257 caaagctgccattgtagcccgccacacttaccttgccaatggccaaaccaaagtactgac 108993316
Query: 255 gcagaagttgtcatcggtcagaggcaatcacattatctcaggaacctgtgcatcatggcg 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108993317 gcagaagttgtcatcggtcagaggcaatcacattatctcaggaacctgtgcatcatggcg 108993376
Query: 315 tggcaagagccttcgggtgcagaagatcaggccttctatcttgggctgcaacatccttcg 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108993377 tggcaagagccttcgggtgcagaagatcaggccttctatcttgggctgcaacatccttcg 108993436
Query: 375 agttgaatacttcttactg 393
|||||||||||||||||||
Sbjct: 108993437 agttgaatacttcttactg 108993455
Score = 377 bits (190), Expect = e-101
Identities = 216/221 (97%), Gaps = 3/221 (1%)
Strand = Plus / Plus
Query: 1642 tgtttctcactacttctgagactttgtcccagtgtacagaattctgcaattctgacactc 1701
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108995044 tgtttctcactacttttgagactttgtcccagtgtacagaattctgcaattctgacactc 108995103
Query: 1702 taattatatgagaagggttgctgctatcagccttgcctactgtgacatctccnaagcc-a 1760
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 108995104 taattatatgagaagggttgctgctatcagccttgcctactgtgacatctccaaagccaa 108995163
Query: 1761 ggaagaactcgatcaaaatgccccaacactgtgattagagcatccagatggtgcccatga 1820
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 108995164 ggaagaactcgatcaaaatgccccaacactgtgattagagcatccagatggtg-ccatga 108995222
Query: 1821 g-aactagagggcaggttttcacaaaagcccctagggctcc 1860
| |||||||||||||||||||||||||||||||||||||||
Sbjct: 108995223 gaaactagagggcaggttttcacaaaagcccctagggctcc 108995263
Score = 309 bits (156), Expect = 3e-81
Identities = 156/156 (100%)
Strand = Plus / Plus
Query: 549 agctcctccatgctatatggatatcattcctgaagatcaccgattggagagccccaccac 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108993824 agctcctccatgctatatggatatcattcctgaagatcaccgattggagagccccaccac 108993883
Query: 609 tcctctgctagatgacacagatggctctcaagacagccctatctttatgtatgctcctga 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108993884 tcctctgctagatgacacagatggctctcaagacagccctatctttatgtatgctcctga 108993943
Query: 669 gtttaagttcatgccaccacctacttacagtgaggt 704
||||||||||||||||||||||||||||||||||||
Sbjct: 108993944 gtttaagttcatgccaccacctacttacagtgaggt 108993979
Score = 305 bits (154), Expect = 5e-80
Identities = 157/158 (99%)
Strand = Plus / Plus
Query: 393 gatctacgttagtgtccctggctccaagaaggtcattcttgacctgccgctggtaattgg 452
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 108993556 gatctacgttagtgtccctggctccaagaaggtcattcttgacctgcccctggtaattgg 108993615
Query: 453 cagcaggtcaggcctcagcagccggacgtccagcatggccagccgaaccagctccgagat 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108993616 cagcaggtcaggcctcagcagccggacgtccagcatggccagccgaaccagctccgagat 108993675
Query: 513 gagttgggtagatctaaacatccctgatacccccgaag 550
||||||||||||||||||||||||||||||||||||||
Sbjct: 108993676 gagttgggtagatctaaacatccctgatacccccgaag 108993713
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 55,103,572
Number of extensions: 343
Number of successful extensions: 343
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 338
Number of HSP's successfully gapped: 6
Length of query: 1860
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1838
Effective length of database: 2,808,408,574
Effective search space: 5161854959012
Effective search space used: 5161854959012
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)