Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001610
(1490 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776523.2| cytosol aminopeptidase [Bos taurus]. 769 0.0
Alignment gi|NP_001029469.1| probable aminopeptidase NPEPL1 [Bos taurus]. 138 1e-32
>ref|NP_776523.2| cytosol aminopeptidase [Bos taurus].
Length = 519
Score = 769 bits (1986), Expect = 0.0
Identities = 379/399 (94%), Positives = 393/399 (98%)
Frame = +2
Query: 2 IRAAVAAGCRQIQDLEIPSVEVDPCGDAQAAAEGAVLGLYEYDELKQKKKVVVSAKLHGS 181
IRAAVAAGCRQIQDLEIPSVEVDPCGDAQAAAEGAVLGLYEYD+LKQK+KVVVSAKLHGS
Sbjct: 121 IRAAVAAGCRQIQDLEIPSVEVDPCGDAQAAAEGAVLGLYEYDDLKQKRKVVVSAKLHGS 180
Query: 182 GDQEAWQRGVLFASGQNLARHLMETPANEMTPTRFAEVIEKNLKSASSKTDVHIRPKSWI 361
DQEAWQRGVLFASGQNLAR LMETPANEMTPT+FAE++E+NLKSAS KTDV IRPKSWI
Sbjct: 181 EDQEAWQRGVLFASGQNLARRLMETPANEMTPTKFAEIVEENLKSASIKTDVFIRPKSWI 240
Query: 362 EEQEMGSFLSVAKGSEEPPVFLEIHYKGSPDASDPPLVFVGKGITFDSGGISIKASANMD 541
EEQEMGSFLSVAKGSEEPPVFLEIHYKGSP+AS+PPLVFVGKGITFDSGGISIKA+ANMD
Sbjct: 241 EEQEMGSFLSVAKGSEEPPVFLEIHYKGSPNASEPPLVFVGKGITFDSGGISIKAAANMD 300
Query: 542 LMRADMGGAATICSTIVSAAKLDLPINLVGLAPLCENMPSGKANKPGDVVRAKNGKTIQV 721
LMRADMGGAATICS IVSAAKLDLPIN+VGLAPLCENMPSGKANKPGDVVRA+NGKTIQV
Sbjct: 301 LMRADMGGAATICSAIVSAAKLDLPINIVGLAPLCENMPSGKANKPGDVVRARNGKTIQV 360
Query: 722 DNTDAEGRLILADALCYAHTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFE 901
DNTDAEGRLILADALCYAHTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFE
Sbjct: 361 DNTDAEGRLILADALCYAHTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFE 420
Query: 902 ASIETGDRVWRMPLFEHYTKQIVDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHL 1081
ASIETGDRVWRMPLFEHYT+Q++DCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHL
Sbjct: 421 ASIETGDRVWRMPLFEHYTRQVIDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHL 480
Query: 1082 DIAGVMTNKDEVPYLRKGMAGRPTRTLIEFLLRFSQDSA 1198
DIAGVMTNKDEVPYLRKGMAGRPTRTLIEFL RFSQDSA
Sbjct: 481 DIAGVMTNKDEVPYLRKGMAGRPTRTLIEFLFRFSQDSA 519
>ref|NP_001029469.1| probable aminopeptidase NPEPL1 [Bos taurus].
Length = 523
Score = 138 bits (347), Expect = 1e-32
Identities = 95/298 (31%), Positives = 144/298 (48%), Gaps = 9/298 (3%)
Frame = +2
Query: 224 GQNLARHLMETPANEMTPTRFAEVIEKNLKSASSKTDVHIRPKSWIEEQEMGSFLSVAKG 403
G LA +++TP NEM F E I+K K V IR + ++ + G V K
Sbjct: 177 GVRLAARIVDTPCNEMNTDTFLEEIKKVGKELGIVPTV-IRDEE-LKARGFGGIYGVGKA 234
Query: 404 SEEPPVFLEIHYKGSPDASDPPLVFVGKGITFDSGGISIKASANMDLMRADMGGAATICS 583
+ PP + + +PD + + +VGKGI +D+GG+S+K M M+ D GGAA +
Sbjct: 235 AIHPPALAVLSH--TPDGATQTIAWVGKGIVYDTGGLSMKGKTTMPGMKRDCGGAAAVLG 292
Query: 584 TIVSAAKLDLPINLVGLAPLCENMPSGKANKPGDVVRAKNGKTIQVDNTDAEGRLILADA 763
+A K L + L EN A +P D+ +GKT++++NTDAEGRL+LAD
Sbjct: 293 AFRAAVKQGFKDTLHAVFCLAENSVGPNATRPDDIHLLYSGKTVEINNTDAEGRLVLADG 352
Query: 764 LCYA-HTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMP 940
+ YA +I++ ATLTGA IA G V TNS+ +A + GD V +
Sbjct: 353 VSYACKDLGADIILDVATLTGAQGIATGKYHAAVLTNSAEWEAACVKAGRQCGDLVHPLV 412
Query: 941 L-----FEHYTKQIVDCQLADVNNIGKYRSAGACTAAAFLKEFVTHP---KWAHLDIA 1090
F +T + D + N++ ++ + A F+ + W HLDIA
Sbjct: 413 YCPELHFSEFTSAVADMK----NSVADRDNSPSSCAGLFIASHIGFDWPGVWVHLDIA 466
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 58,397,500
Number of extensions: 1681206
Number of successful extensions: 5909
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5897
Number of HSP's successfully gapped: 2
Length of query: 496
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 390
Effective length of database: 14,174,046
Effective search space: 5527877940
Effective search space used: 5527877940
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001610
(1490 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536228.2| PREDICTED: similar to leucine aminopeptidase [C... 752 0.0
Alignment gi|XP_543071.2| PREDICTED: similar to aminopeptidase-like 1 [Ca... 125 1e-28
>ref|XP_536228.2| PREDICTED: similar to leucine aminopeptidase [Canis familiaris].
Length = 519
Score = 752 bits (1941), Expect = 0.0
Identities = 365/399 (91%), Positives = 392/399 (98%)
Frame = +2
Query: 2 IRAAVAAGCRQIQDLEIPSVEVDPCGDAQAAAEGAVLGLYEYDELKQKKKVVVSAKLHGS 181
IR AVAAGCRQ+QDLE+ SVEVDPCGDAQAAAEGAVLGLYEYD+LKQKKK VVSA+LHG
Sbjct: 121 IRVAVAAGCRQVQDLELSSVEVDPCGDAQAAAEGAVLGLYEYDDLKQKKKPVVSAQLHGG 180
Query: 182 GDQEAWQRGVLFASGQNLARHLMETPANEMTPTRFAEVIEKNLKSASSKTDVHIRPKSWI 361
GDQEAWQ+GVLFASGQNLARHLMETPANEMTPTRFA++IEKNL+SA+SKT+V+IRPKSWI
Sbjct: 181 GDQEAWQKGVLFASGQNLARHLMETPANEMTPTRFAKIIEKNLRSANSKTEVYIRPKSWI 240
Query: 362 EEQEMGSFLSVAKGSEEPPVFLEIHYKGSPDASDPPLVFVGKGITFDSGGISIKASANMD 541
EEQEMGSFLSVAKGS+EPPVFLEIHY+GSP+AS+ PLVFVGKGITFDSGGISIKA+ANMD
Sbjct: 241 EEQEMGSFLSVAKGSDEPPVFLEIHYRGSPNASEAPLVFVGKGITFDSGGISIKAAANMD 300
Query: 542 LMRADMGGAATICSTIVSAAKLDLPINLVGLAPLCENMPSGKANKPGDVVRAKNGKTIQV 721
LMRADMGGAATICS IVSAAKL+LPIN+VGLAPLCENMPSGKANKPGDVV+AKNGKTIQV
Sbjct: 301 LMRADMGGAATICSAIVSAAKLNLPINIVGLAPLCENMPSGKANKPGDVVKAKNGKTIQV 360
Query: 722 DNTDAEGRLILADALCYAHTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFE 901
DNTDAEGRLILADALCYAHTFNPK+IINAATLTGAMD+ALGSGATGVFTNSSWLWNKLFE
Sbjct: 361 DNTDAEGRLILADALCYAHTFNPKIIINAATLTGAMDVALGSGATGVFTNSSWLWNKLFE 420
Query: 902 ASIETGDRVWRMPLFEHYTKQIVDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHL 1081
ASIETGDRVWRMPLFEHYT+Q+VDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHL
Sbjct: 421 ASIETGDRVWRMPLFEHYTRQVVDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHL 480
Query: 1082 DIAGVMTNKDEVPYLRKGMAGRPTRTLIEFLLRFSQDSA 1198
DIAGVMTNKDEVPYLRKGM GRPTRTLIEFLL+FS+++A
Sbjct: 481 DIAGVMTNKDEVPYLRKGMTGRPTRTLIEFLLQFSENNA 519
>ref|XP_543071.2| PREDICTED: similar to aminopeptidase-like 1 [Canis familiaris].
Length = 397
Score = 125 bits (313), Expect = 1e-28
Identities = 76/208 (36%), Positives = 111/208 (53%), Gaps = 1/208 (0%)
Frame = +2
Query: 224 GQNLARHLMETPANEMTPTRFAEVIEKNLKSASSKTDVHIRPKSWIEEQEMGSFLSVAKG 403
G LA +++TP NEM F E I+K K T IR + ++ + G V K
Sbjct: 177 GVRLAARIVDTPCNEMNTDTFLEEIKKVGKDLGI-TPTIIRDEE-LKTRGFGGIYGVGKA 234
Query: 404 SEEPPVFLEIHYKGSPDASDPPLVFVGKGITFDSGGISIKASANMDLMRADMGGAATICS 583
+ PP + + +P+ + + +VGKGI +D+GG+SIK M M+ D GGAA +
Sbjct: 235 ALHPPALAVLSH--TPEGATQTIAWVGKGIVYDTGGLSIKGKTTMPGMKRDCGGAAAVLG 292
Query: 584 TIVSAAKLDLPINLVGLAPLCENMPSGKANKPGDVVRAKNGKTIQVDNTDAEGRLILADA 763
+A K NL + L EN A +P D+ +GKT++++NTDAEGRL+LAD
Sbjct: 293 AFRAAIKQGFKDNLHAVFCLAENSVGPNATRPDDIHLLYSGKTVEINNTDAEGRLVLADG 352
Query: 764 LCYA-HTFNPKVIINAATLTGAMDIALG 844
+ YA +I++ ATLTGA IA G
Sbjct: 353 VSYACKDLGADIILDMATLTGAQGIATG 380
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 61,059,998
Number of extensions: 1735017
Number of successful extensions: 5736
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5717
Number of HSP's successfully gapped: 2
Length of query: 496
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 389
Effective length of database: 15,307,552
Effective search space: 5954637728
Effective search space used: 5954637728
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001610
(1490 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056991.2| cytosol aminopeptidase [Homo sapiens]. 764 0.0
Alignment gi|NP_001191802.1| probable aminopeptidase NPEPL1 isoform 3 [Ho... 139 7e-33
Alignment gi|NP_001191801.1| probable aminopeptidase NPEPL1 isoform 2 [Ho... 139 7e-33
Alignment gi|NP_078939.3| probable aminopeptidase NPEPL1 isoform 1 [Homo ... 139 7e-33
>ref|NP_056991.2| cytosol aminopeptidase [Homo sapiens].
Length = 519
Score = 764 bits (1973), Expect = 0.0
Identities = 374/399 (93%), Positives = 393/399 (98%)
Frame = +2
Query: 2 IRAAVAAGCRQIQDLEIPSVEVDPCGDAQAAAEGAVLGLYEYDELKQKKKVVVSAKLHGS 181
IRAAVAAGCRQIQDLE+ SVEVDPCGDAQAAAEGAVLGLYEYD+LKQKKK+ VSAKL+GS
Sbjct: 121 IRAAVAAGCRQIQDLELSSVEVDPCGDAQAAAEGAVLGLYEYDDLKQKKKMAVSAKLYGS 180
Query: 182 GDQEAWQRGVLFASGQNLARHLMETPANEMTPTRFAEVIEKNLKSASSKTDVHIRPKSWI 361
GDQEAWQ+GVLFASGQNLAR LMETPANEMTPTRFAE+IEKNLKSASSKT+VHIRPKSWI
Sbjct: 181 GDQEAWQKGVLFASGQNLARQLMETPANEMTPTRFAEIIEKNLKSASSKTEVHIRPKSWI 240
Query: 362 EEQEMGSFLSVAKGSEEPPVFLEIHYKGSPDASDPPLVFVGKGITFDSGGISIKASANMD 541
EEQ MGSFLSVAKGS+EPPVFLEIHYKGSP+A++PPLVFVGKGITFDSGGISIKASANMD
Sbjct: 241 EEQAMGSFLSVAKGSDEPPVFLEIHYKGSPNANEPPLVFVGKGITFDSGGISIKASANMD 300
Query: 542 LMRADMGGAATICSTIVSAAKLDLPINLVGLAPLCENMPSGKANKPGDVVRAKNGKTIQV 721
LMRADMGGAATICS IVSAAKL+LPIN++GLAPLCENMPSGKANKPGDVVRAKNGKTIQV
Sbjct: 301 LMRADMGGAATICSAIVSAAKLNLPINIIGLAPLCENMPSGKANKPGDVVRAKNGKTIQV 360
Query: 722 DNTDAEGRLILADALCYAHTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFE 901
DNTDAEGRLILADALCYAHTFNPKVI+NAATLTGAMD+ALGSGATGVFTNSSWLWNKLFE
Sbjct: 361 DNTDAEGRLILADALCYAHTFNPKVILNAATLTGAMDVALGSGATGVFTNSSWLWNKLFE 420
Query: 902 ASIETGDRVWRMPLFEHYTKQIVDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHL 1081
ASIETGDRVWRMPLFEHYT+Q+VDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHL
Sbjct: 421 ASIETGDRVWRMPLFEHYTRQVVDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHL 480
Query: 1082 DIAGVMTNKDEVPYLRKGMAGRPTRTLIEFLLRFSQDSA 1198
DIAGVMTNKDEVPYLRKGM GRPTRTLIEFLLRFSQD+A
Sbjct: 481 DIAGVMTNKDEVPYLRKGMTGRPTRTLIEFLLRFSQDNA 519
>ref|NP_001191802.1| probable aminopeptidase NPEPL1 isoform 3 [Homo sapiens].
Length = 475
Score = 139 bits (350), Expect = 7e-33
Identities = 96/298 (32%), Positives = 144/298 (48%), Gaps = 9/298 (3%)
Frame = +2
Query: 224 GQNLARHLMETPANEMTPTRFAEVIEKNLKSASSKTDVHIRPKSWIEEQEMGSFLSVAKG 403
G LA +++TP NEM F E I K K + IR + ++ + G V K
Sbjct: 129 GVRLAARIVDTPCNEMNTDTFLEEINKVGKELGIIPTI-IRDEE-LKTRGFGGIYGVGKA 186
Query: 404 SEEPPVFLEIHYKGSPDASDPPLVFVGKGITFDSGGISIKASANMDLMRADMGGAATICS 583
+ PP + + +PD + + +VGKGI +D+GG+SIK M M+ D GGAA +
Sbjct: 187 ALHPPALAVLSH--TPDGATQTIAWVGKGIVYDTGGLSIKGKTTMPGMKRDCGGAAAVLG 244
Query: 584 TIVSAAKLDLPINLVGLAPLCENMPSGKANKPGDVVRAKNGKTIQVDNTDAEGRLILADA 763
+A K NL + L EN A +P D+ +GKT++++NTDAEGRL+LAD
Sbjct: 245 AFRAAIKQGFKDNLHAVFCLAENSVGPNATRPDDIHLLYSGKTVEINNTDAEGRLVLADG 304
Query: 764 LCYA-HTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMP 940
+ YA +I++ ATLTGA IA G V TNS+ +A + GD V +
Sbjct: 305 VSYACKDLGADIILDMATLTGAQGIATGKYHAAVLTNSAEWEAACVKAGRKCGDLVHPLV 364
Query: 941 L-----FEHYTKQIVDCQLADVNNIGKYRSAGACTAAAFLKEFVTHP---KWAHLDIA 1090
F +T + D + N++ ++ + A F+ + W HLDIA
Sbjct: 365 YCPELHFSEFTSAVADMK----NSVADRDNSPSSCAGLFIASHIGFDWPGVWVHLDIA 418
>ref|NP_001191801.1| probable aminopeptidase NPEPL1 isoform 2 [Homo sapiens].
Length = 495
Score = 139 bits (350), Expect = 7e-33
Identities = 96/298 (32%), Positives = 144/298 (48%), Gaps = 9/298 (3%)
Frame = +2
Query: 224 GQNLARHLMETPANEMTPTRFAEVIEKNLKSASSKTDVHIRPKSWIEEQEMGSFLSVAKG 403
G LA +++TP NEM F E I K K + IR + ++ + G V K
Sbjct: 149 GVRLAARIVDTPCNEMNTDTFLEEINKVGKELGIIPTI-IRDEE-LKTRGFGGIYGVGKA 206
Query: 404 SEEPPVFLEIHYKGSPDASDPPLVFVGKGITFDSGGISIKASANMDLMRADMGGAATICS 583
+ PP + + +PD + + +VGKGI +D+GG+SIK M M+ D GGAA +
Sbjct: 207 ALHPPALAVLSH--TPDGATQTIAWVGKGIVYDTGGLSIKGKTTMPGMKRDCGGAAAVLG 264
Query: 584 TIVSAAKLDLPINLVGLAPLCENMPSGKANKPGDVVRAKNGKTIQVDNTDAEGRLILADA 763
+A K NL + L EN A +P D+ +GKT++++NTDAEGRL+LAD
Sbjct: 265 AFRAAIKQGFKDNLHAVFCLAENSVGPNATRPDDIHLLYSGKTVEINNTDAEGRLVLADG 324
Query: 764 LCYA-HTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMP 940
+ YA +I++ ATLTGA IA G V TNS+ +A + GD V +
Sbjct: 325 VSYACKDLGADIILDMATLTGAQGIATGKYHAAVLTNSAEWEAACVKAGRKCGDLVHPLV 384
Query: 941 L-----FEHYTKQIVDCQLADVNNIGKYRSAGACTAAAFLKEFVTHP---KWAHLDIA 1090
F +T + D + N++ ++ + A F+ + W HLDIA
Sbjct: 385 YCPELHFSEFTSAVADMK----NSVADRDNSPSSCAGLFIASHIGFDWPGVWVHLDIA 438
>ref|NP_078939.3| probable aminopeptidase NPEPL1 isoform 1 [Homo sapiens].
Length = 523
Score = 139 bits (350), Expect = 7e-33
Identities = 96/298 (32%), Positives = 144/298 (48%), Gaps = 9/298 (3%)
Frame = +2
Query: 224 GQNLARHLMETPANEMTPTRFAEVIEKNLKSASSKTDVHIRPKSWIEEQEMGSFLSVAKG 403
G LA +++TP NEM F E I K K + IR + ++ + G V K
Sbjct: 177 GVRLAARIVDTPCNEMNTDTFLEEINKVGKELGIIPTI-IRDEE-LKTRGFGGIYGVGKA 234
Query: 404 SEEPPVFLEIHYKGSPDASDPPLVFVGKGITFDSGGISIKASANMDLMRADMGGAATICS 583
+ PP + + +PD + + +VGKGI +D+GG+SIK M M+ D GGAA +
Sbjct: 235 ALHPPALAVLSH--TPDGATQTIAWVGKGIVYDTGGLSIKGKTTMPGMKRDCGGAAAVLG 292
Query: 584 TIVSAAKLDLPINLVGLAPLCENMPSGKANKPGDVVRAKNGKTIQVDNTDAEGRLILADA 763
+A K NL + L EN A +P D+ +GKT++++NTDAEGRL+LAD
Sbjct: 293 AFRAAIKQGFKDNLHAVFCLAENSVGPNATRPDDIHLLYSGKTVEINNTDAEGRLVLADG 352
Query: 764 LCYA-HTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMP 940
+ YA +I++ ATLTGA IA G V TNS+ +A + GD V +
Sbjct: 353 VSYACKDLGADIILDMATLTGAQGIATGKYHAAVLTNSAEWEAACVKAGRKCGDLVHPLV 412
Query: 941 L-----FEHYTKQIVDCQLADVNNIGKYRSAGACTAAAFLKEFVTHP---KWAHLDIA 1090
F +T + D + N++ ++ + A F+ + W HLDIA
Sbjct: 413 YCPELHFSEFTSAVADMK----NSVADRDNSPSSCAGLFIASHIGFDWPGVWVHLDIA 466
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 59,794,501
Number of extensions: 1699530
Number of successful extensions: 5472
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5449
Number of HSP's successfully gapped: 4
Length of query: 496
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 389
Effective length of database: 14,770,016
Effective search space: 5745536224
Effective search space used: 5745536224
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001610
(1490 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_077754.3| cytosol aminopeptidase [Mus musculus]. 757 0.0
Alignment gi|NP_998898.1| probable aminopeptidase NPEPL1 [Mus musculus]. 137 3e-32
>ref|NP_077754.3| cytosol aminopeptidase [Mus musculus].
Length = 519
Score = 757 bits (1955), Expect = 0.0
Identities = 367/399 (91%), Positives = 392/399 (98%)
Frame = +2
Query: 2 IRAAVAAGCRQIQDLEIPSVEVDPCGDAQAAAEGAVLGLYEYDELKQKKKVVVSAKLHGS 181
IRAAVAAGCRQ+QDLE+PSVEVDPCGDAQAAAEGAVLGLYEYD+LKQKKKV VSAKLHGS
Sbjct: 121 IRAAVAAGCRQVQDLELPSVEVDPCGDAQAAAEGAVLGLYEYDDLKQKKKVAVSAKLHGS 180
Query: 182 GDQEAWQRGVLFASGQNLARHLMETPANEMTPTRFAEVIEKNLKSASSKTDVHIRPKSWI 361
GD EAW++GVLFASGQNLARHLME+PANEMTPTRFAE+IEKNLKSASSKT VHIRPKSWI
Sbjct: 181 GDLEAWEKGVLFASGQNLARHLMESPANEMTPTRFAEIIEKNLKSASSKTKVHIRPKSWI 240
Query: 362 EEQEMGSFLSVAKGSEEPPVFLEIHYKGSPDASDPPLVFVGKGITFDSGGISIKASANMD 541
EEQEMGSFLSVAKGSEEPPVFLEIHY GSP+A++ PLVFVGKGITFDSGGISIKASANMD
Sbjct: 241 EEQEMGSFLSVAKGSEEPPVFLEIHYMGSPNATEAPLVFVGKGITFDSGGISIKASANMD 300
Query: 542 LMRADMGGAATICSTIVSAAKLDLPINLVGLAPLCENMPSGKANKPGDVVRAKNGKTIQV 721
LMRADMGGAATICS IVSAAKL+LPIN++GLAPLCENMPSGKANKPGDVVRA+NGKTIQV
Sbjct: 301 LMRADMGGAATICSAIVSAAKLNLPINIIGLAPLCENMPSGKANKPGDVVRARNGKTIQV 360
Query: 722 DNTDAEGRLILADALCYAHTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFE 901
DNTDAEGRLILADALCYAHTFNPKVIINAATLTGAMD+ALGSGATGVFTNSSWLWNKLFE
Sbjct: 361 DNTDAEGRLILADALCYAHTFNPKVIINAATLTGAMDVALGSGATGVFTNSSWLWNKLFE 420
Query: 902 ASIETGDRVWRMPLFEHYTKQIVDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHL 1081
AS+ETGDRVWRMPLFEHYT+Q++DCQLADVNN+GKYRSAGACTAAAFL+EFVTH KWAHL
Sbjct: 421 ASVETGDRVWRMPLFEHYTRQVIDCQLADVNNLGKYRSAGACTAAAFLREFVTHTKWAHL 480
Query: 1082 DIAGVMTNKDEVPYLRKGMAGRPTRTLIEFLLRFSQDSA 1198
DIAGVMTNKDE+PYLRKGM+GRPTRTLIEFLLRFS+DS+
Sbjct: 481 DIAGVMTNKDEIPYLRKGMSGRPTRTLIEFLLRFSKDSS 519
>ref|NP_998898.1| probable aminopeptidase NPEPL1 [Mus musculus].
Length = 524
Score = 137 bits (344), Expect = 3e-32
Identities = 96/298 (32%), Positives = 144/298 (48%), Gaps = 9/298 (3%)
Frame = +2
Query: 224 GQNLARHLMETPANEMTPTRFAEVIEKNLKSASSKTDVHIRPKSWIEEQEMGSFLSVAKG 403
G LA +++TP NEM F E I + K T IR + ++ + G V K
Sbjct: 177 GVRLAARIVDTPCNEMNTDIFLEEIIQVGKELGI-TPTIIRDEQ-LKTKGFGGIYGVGKA 234
Query: 404 SEEPPVFLEIHYKGSPDASDPPLVFVGKGITFDSGGISIKASANMDLMRADMGGAATICS 583
+ PP + + +PD + + +VGKGI +D+GG+SIK M M+ D GGAA +
Sbjct: 235 ALHPPALAILSH--TPDGATQTIAWVGKGIVYDTGGLSIKGKTTMPGMKRDCGGAAAVLG 292
Query: 584 TIVSAAKLDLPINLVGLAPLCENMPSGKANKPGDVVRAKNGKTIQVDNTDAEGRLILADA 763
+A K NL + L EN A +P D+ +GKT++++NTDAEGRL+LAD
Sbjct: 293 AFRAAIKQGFKDNLHAVFCLAENAVGPNATRPDDIHLLYSGKTVEINNTDAEGRLVLADG 352
Query: 764 LCYA-HTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMP 940
+ YA +I++ ATLTGA IA G V TNS+ +A + GD V +
Sbjct: 353 VSYACKDLGADIIVDMATLTGAQGIATGKYHAAVLTNSAEWEAACVKAGRKCGDLVHPLV 412
Query: 941 L-----FEHYTKQIVDCQLADVNNIGKYRSAGACTAAAFLKEFVTHP---KWAHLDIA 1090
F +T + D + N++ ++ + A F+ + W HLDIA
Sbjct: 413 YCPELHFSEFTSAVADMK----NSVADRDNSPSSCAGLFIASHIGFDWPGVWVHLDIA 466
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 50,693,934
Number of extensions: 1424368
Number of successful extensions: 4721
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4711
Number of HSP's successfully gapped: 2
Length of query: 496
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 391
Effective length of database: 12,463,779
Effective search space: 4873337589
Effective search space used: 4873337589
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001610
(1490 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003128918.2| PREDICTED: condensin complex subunit 3 [Sus ... 322 4e-88
Alignment gi|XP_003356918.1| PREDICTED: cytosol aminopeptidase-like [Sus ... 292 4e-79
Alignment gi|NP_001116620.1| probable aminopeptidase NPEPL1 [Sus scrofa]. 139 3e-33
Alignment gi|XP_003356917.1| PREDICTED: protein FAM184B-like [Sus scrofa]. 119 3e-27
>ref|XP_003128918.2| PREDICTED: condensin complex subunit 3 [Sus scrofa].
Length = 817
Score = 322 bits (824), Expect = 4e-88
Identities = 160/163 (98%), Positives = 162/163 (99%)
Frame = +2
Query: 332 DVHIRPKSWIEEQEMGSFLSVAKGSEEPPVFLEIHYKGSPDASDPPLVFVGKGITFDSGG 511
DV ++PKSWIEEQEMGSFLSVAKGSEEPPVFLEIHYKGSPDASDPPLVFVGKGITFDSGG
Sbjct: 563 DVTLKPKSWIEEQEMGSFLSVAKGSEEPPVFLEIHYKGSPDASDPPLVFVGKGITFDSGG 622
Query: 512 ISIKASANMDLMRADMGGAATICSTIVSAAKLDLPINLVGLAPLCENMPSGKANKPGDVV 691
ISIKASANMDLMRADMGGAATICSTIVSAAKLDLPINLVGLAPLCENMPSGKANKPGDVV
Sbjct: 623 ISIKASANMDLMRADMGGAATICSTIVSAAKLDLPINLVGLAPLCENMPSGKANKPGDVV 682
Query: 692 RAKNGKTIQVDNTDAEGRLILADALCYAHTFNPKVIINAATLT 820
RAKNGKTIQVDNTDAEGRLILADALCYAHTFNPKVIINAATLT
Sbjct: 683 RAKNGKTIQVDNTDAEGRLILADALCYAHTFNPKVIINAATLT 725
>ref|XP_003356918.1| PREDICTED: cytosol aminopeptidase-like [Sus scrofa].
Length = 407
Score = 292 bits (747), Expect = 4e-79
Identities = 175/287 (60%), Positives = 195/287 (67%), Gaps = 14/287 (4%)
Frame = +2
Query: 2 IRAAVAAGCRQIQDLEIPSVEVDPCGDAQAAAEGAVLGLYEYDELKQKKKVVVSAKLHGS 181
IRAAVAAGCRQIQDLEIPSVEVDPCGDAQAAAEGAVLGLYEYDELKQKKKVVVSAKLHGS
Sbjct: 121 IRAAVAAGCRQIQDLEIPSVEVDPCGDAQAAAEGAVLGLYEYDELKQKKKVVVSAKLHGS 180
Query: 182 GDQEAWQRGVLFASGQNLARHLMETPANEMTPTRFAEVIEKNLKSASSKTDVHIRPKSWI 361
GDQEAWQRGVLFASGQNLARHLMETPANEMTPTRFAEVIEKNLKSASSKTDVHI P
Sbjct: 181 GDQEAWQRGVLFASGQNLARHLMETPANEMTPTRFAEVIEKNLKSASSKTDVHISPHDTR 240
Query: 362 EEQEMGSFLSVAKGSEEP----PVFLEIHYKGSPDASDPPLVFVGKGITFDSGGISIKAS 529
+E+ + + + +EP +++ K SPD K T G +++
Sbjct: 241 DERPSPTPPTPSTREKEPYPAAQEQVQVLVKASPDPERQEHEKTDKTQTKTEPGGWMESQ 300
Query: 530 ANMDLMRADM----------GGAATICSTIVSAAKLDLPINLVGLAPLCENMPSGKANKP 679
A D R+ G A C LPI G ++ S
Sbjct: 301 AYGDEQRSTKQLEVRAQEGEGQRAETCPM--------LPIRYGG-----QHSGSRSTTHT 347
Query: 680 GDVVRAKNGKTIQVDNTDAEGRLILADALCYAHTFNPKVIINAATLT 820
G +V+AK GK+++VD TDAEGRLILADALCYAHTFNPKVIINAATLT
Sbjct: 348 GSLVKAK-GKSLKVDTTDAEGRLILADALCYAHTFNPKVIINAATLT 393
>ref|NP_001116620.1| probable aminopeptidase NPEPL1 [Sus scrofa].
Length = 523
Score = 139 bits (351), Expect = 3e-33
Identities = 106/330 (32%), Positives = 160/330 (48%), Gaps = 13/330 (3%)
Frame = +2
Query: 140 QKKKVVVSAKLHG--SGDQEAWQRGVLFAS--GQNLARHLMETPANEMTPTRFAEVIEKN 307
+KK VVV L G +G E L ++ G LA +++TP NEM F E I+K
Sbjct: 145 EKKTVVVEFFLVGQDNGPVEVSTLQCLTSATEGVRLAARIVDTPCNEMNTDAFLEEIKKV 204
Query: 308 LKSASSKTDVHIRPKSWIEEQEMGSFLSVAKGSEEPPVFLEIHYKGSPDASDPPLVFVGK 487
+ V IR + ++ + G V K + PP + + +PD + + +VGK
Sbjct: 205 GQDLGIAPTV-IRDEE-LKTRGFGGIYGVGKAAVHPPALAVLSH--TPDGATQTIAWVGK 260
Query: 488 GITFDSGGISIKASANMDLMRADMGGAATICSTIVSAAKLDLPINLVGLAPLCENMPSGK 667
GI +D+GG+S+K M M+ D GGAA + +A + NL + L EN K
Sbjct: 261 GIVYDTGGLSMKGKTTMPGMKRDCGGAAAVLGAFRAAVRQGFKDNLHAVFCLAENSVGPK 320
Query: 668 ANKPGDVVRAKNGKTIQVDNTDAEGRLILADALCYA-HTFNPKVIINAATLTGAMDIALG 844
A +P D+ +GKT++++NTDAEGRL+LAD + YA +I++ ATLTGA IA G
Sbjct: 321 ATRPDDIHLLYSGKTVEINNTDAEGRLVLADGVSYACKDLGADIILDIATLTGAQGIATG 380
Query: 845 SGATGVFTNSSWLWNKLFEASIETGDRVWRMPL-----FEHYTKQIVDCQLADVNNIGKY 1009
V TNS+ +A + GD V + F +T + D + N++
Sbjct: 381 KYHAAVLTNSAEWEAACVKAGRQCGDLVHPLVFCPELHFCEFTSAVADMK----NSVADR 436
Query: 1010 RSAGACTAAAFLKE---FVTHPKWAHLDIA 1090
++ + A F+ F W HLDIA
Sbjct: 437 DNSPSSCAGLFIASHLGFDWPGVWVHLDIA 466
>ref|XP_003356917.1| PREDICTED: protein FAM184B-like [Sus scrofa].
Length = 285
Score = 119 bits (299), Expect = 3e-27
Identities = 58/64 (90%), Positives = 58/64 (90%)
Frame = -2
Query: 343 DVDVCFTAGTFEILLNNFSKSGWRHLIGGRLHQVACQVLPRSKEDTPLPGLLIPTSVELG 164
DVDVCFTAGTFEILLNNFSKSGWRHLIGGRLHQVACQVLPRSKEDTPLPGLLIPT G
Sbjct: 11 DVDVCFTAGTFEILLNNFSKSGWRHLIGGRLHQVACQVLPRSKEDTPLPGLLIPT----G 66
Query: 163 RHDH 152
R H
Sbjct: 67 RRKH 70
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 37,668,251
Number of extensions: 1081343
Number of successful extensions: 3842
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3826
Number of HSP's successfully gapped: 4
Length of query: 496
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 393
Effective length of database: 8,779,541
Effective search space: 3450359613
Effective search space used: 3450359613
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001610
(1490 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 793 0.0
>Sscrofa_Chr08
|| Length = 148491826
Score = 793 bits (400), Expect = 0.0
Identities = 456/482 (94%)
Strand = Plus / Plus
Query: 1009 cagatctgcaggagcatgtaccgctgcagcgttcctgaaagaatttgtgactcatcctaa 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12416927 cagatctgcaggagcatgtaccgctgcagcgttcctgaaagaatttgtgactcatcctaa 12416986
Query: 1069 gtgggcgcacttggacatagcgggtgtgatgaccaacaaagacgaggttccgtacctgcg 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12416987 gtgggcgcacttggacatagcgggtgtgatgaccaacaaagacgaggttccgtacctgcg 12417046
Query: 1129 caaaggcatggcggggaggcccacgaggaccctcatcgagttcctgcttcggttcagtca 1188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12417047 caaaggcatggcggggaggcccacgaggaccctcatcgagttcctgcttcggttcagtca 12417106
Query: 1189 ggacagtgcttagttcagagggtctaaaattccctccttctgtctgaaatgggcagtaga 1248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12417107 ggacagtgcttagttcagagggtctaaaattccctccttctgtctgaaatgggcagtaga 12417166
Query: 1249 gctccagaatacttttgaatgatcatcttttaagggaaacagaggatggtattttaaacc 1308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12417167 gctccagaatacttttgaatgatcatcttttaagggaaacagaggatggtattttaaacc 12417226
Query: 1309 gtaaaacgaaatttgtgtgcctcaatttgnnnnnnncattttatgcagagatttataaag 1368
||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 12417227 gtaaaacgaaatttgtgtgcctcaatttgtttttttcattttatgcagagatttataaag 12417286
Query: 1369 gtaaagctaatatctttgcttggaagagannnnnnngaaatagtctgtgaaatgannnnn 1428
||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 12417287 gtaaagctaatatctttgcttggaagagatttttttgagatagtctgtgaaatgattttt 12417346
Query: 1429 nnnaaaagctccctaatcggttttcagagtggatgtttgtaaatgaggaacaaaattgta 1488
|||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||
Sbjct: 12417347 tttaaaagctccctaatcggttttcagagtgtatgtttgtaattgaggagcaaaattgta 12417406
Query: 1489 tt 1490
||
Sbjct: 12417407 tt 12417408
Score = 331 bits (167), Expect = 6e-88
Identities = 167/167 (100%)
Strand = Plus / Minus
Query: 179 agtggggatcaggaggcctggcagaggggtgtcctctttgcttctgggcagaacctggca 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12379875 agtggggatcaggaggcctggcagaggggtgtcctctttgcttctgggcagaacctggca 12379816
Query: 239 cgccacctgatggagacgcccgccaatgagatgacgccaaccagatttgctgaagttatt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12379815 cgccacctgatggagacgcccgccaatgagatgacgccaaccagatttgctgaagttatt 12379756
Query: 299 gagaagaatctcaaaagtgccagcagtaaaacagacgtccacatcag 345
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12379755 gagaagaatctcaaaagtgccagcagtaaaacagacgtccacatcag 12379709
Score = 325 bits (164), Expect = 4e-86
Identities = 164/164 (100%)
Strand = Plus / Minus
Query: 17 gcagccgggtgcagacagattcaggacctggagatcccgtcggtggaggtggacccctgc 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12381219 gcagccgggtgcagacagattcaggacctggagatcccgtcggtggaggtggacccctgc 12381160
Query: 77 ggagacgcccaggcggccgcggaaggagcggtgctcgggctctacgagtacgacgagctg 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12381159 ggagacgcccaggcggccgcggaaggagcggtgctcgggctctacgagtacgacgagctg 12381100
Query: 137 aagcagaaaaagaaggtggtcgtgtcggccaagctccacggaag 180
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12381099 aagcagaaaaagaaggtggtcgtgtcggccaagctccacggaag 12381056
Score = 319 bits (161), Expect = 2e-84
Identities = 161/161 (100%)
Strand = Plus / Minus
Query: 344 agacccaagtcttggattgaggaacaggaaatgggatcattcctgagtgtggccaaaggg 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12409264 agacccaagtcttggattgaggaacaggaaatgggatcattcctgagtgtggccaaaggg 12409205
Query: 404 tccgaagagcctccagtcttcctggaaattcactacaaaggcagcccagacgcaagtgac 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12409204 tccgaagagcctccagtcttcctggaaattcactacaaaggcagcccagacgcaagtgac 12409145
Query: 464 ccacccctggtgtttgtcgggaagggaattacctttgacag 504
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 12409144 ccacccctggtgtttgtcgggaagggaattacctttgacag 12409104
Score = 250 bits (126), Expect = 2e-63
Identities = 129/130 (99%)
Strand = Plus / Minus
Query: 502 cagtggcggcatctctatcaaggcgtctgcgaacatggacctcatgagggcggacatggg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12403729 cagtggcggcatctctatcaaggcgtctgcgaacatggacctcatgagggcggacatggg 12403670
Query: 562 cggagctgccaccatctgttccaccatcgtgtctgctgccaagctcgacctgcccatcaa 621
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12403669 cggagctgccactatctgttccaccatcgtgtctgctgccaagctcgacctgcccatcaa 12403610
Query: 622 cctcgtcggt 631
||||||||||
Sbjct: 12403609 cctcgtcggt 12403600
Score = 222 bits (112), Expect = 4e-55
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 900 aggccagcattgaaacgggagaccgggtctggaggatgcccctctttgaacactacacta 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12416357 aggccagcattgaaacgggagaccgggtctggaggatgcccctctttgaacactacacta 12416416
Query: 960 aacagattgtagattgccagcttgctgatgttaataacattgggaaatacag 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12416417 aacagattgtagattgccagcttgctgatgttaataacattgggaaatacag 12416468
Score = 214 bits (108), Expect = 1e-52
Identities = 108/108 (100%)
Strand = Plus / Minus
Query: 716 caggtggacaacaccgacgccgagggcagactcatcctggccgacgcgctctgctacgcg 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12400889 caggtggacaacaccgacgccgagggcagactcatcctggccgacgcgctctgctacgcg 12400830
Query: 776 cacacttttaacccaaaggtcatcatcaatgccgccaccctgacaggt 823
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12400829 cacacttttaacccaaaggtcatcatcaatgccgccaccctgacaggt 12400782
Score = 182 bits (92), Expect = 4e-43
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 629 ggtttggcccctctttgtgaaaacatgcccagcgggaaggccaacaagcctggggatgtc 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12402197 ggtttggcccctctttgtgaaaacatgcccagcgggaaggccaacaagcctggggatgtc 12402138
Query: 689 gttagagccaagaacgggaagaccatccaggt 720
||||||||||||||||||||||||||||||||
Sbjct: 12402137 gttagagccaagaacgggaagaccatccaggt 12402106
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 819 caggtgccatggatatagctttgggatccggtgccactggggtctttaccaattcttcct 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12414022 caggtgccatggatatagctttgggatccggtgccactggggtctttaccaattcttcct 12414081
Query: 879 ggctgtggaacaagctcttcgagg 902
||||||||||||||||||||||||
Sbjct: 12414082 ggctgtggaacaagctcttcgagg 12414105
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 38,886,183
Number of extensions: 179
Number of successful extensions: 179
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 10
Length of query: 1490
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1469
Effective length of database: 2,808,413,156
Effective search space: 4125558926164
Effective search space used: 4125558926164
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)