Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001625
(1258 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001192115.1| hypothetical protein LOC524810 [Bos taurus]. 485 e-144
Alignment gi|NP_001077269.1| immunoglobulin lambda-like polypeptide 1 [Bo... 58 2e-08
Alignment gi|XP_002701782.1| PREDICTED: immunoglobulin lambda-like polype... 58 2e-08
Alignment gi|XP_002694745.1| PREDICTED: IGL@ protein-like [Bos taurus]. 56 6e-08
Alignment gi|XP_002691399.1| PREDICTED: IGK protein-like [Bos taurus]. 54 4e-07
Alignment gi|XP_002700829.1| PREDICTED: IGK protein-like [Bos taurus]. 54 4e-07
>ref|NP_001192115.1| hypothetical protein LOC524810 [Bos taurus].
Length = 487
Score = 485 bits (1249), Expect(3) = e-144
Identities = 240/340 (70%), Positives = 266/340 (78%), Gaps = 5/340 (1%)
Frame = +2
Query: 131 MDLWGPGXXXXXXXXXXTSPKIFPLTLGSSEPAGYVVIACLVRDFFPSEPLTVTWSPSRE 310
+D WG G TSP IFPL+LG+++PAG VVI CLV+ FFPS PL+VTW+ + +
Sbjct: 131 IDAWGQGLLVTVSSESETSPSIFPLSLGNNDPAGQVVIGCLVQGFFPSAPLSVTWNQNGD 190
Query: 311 GVIVRNFPPAQAGGLYTMSSQLTLPVEQCPADQILKCQVQHLSKSSQSVNVXXXXXXXXX 490
V VRNFP AG LYTMSSQLTLP CP Q + CQVQHLSK+S++V V
Sbjct: 191 SVSVRNFPAVLAGSLYTMSSQLTLPASLCPKGQSVTCQVQHLSKASKTVAVPCIIQDSSS 250
Query: 491 XXX-----SLSLQPPALADLLLGSNASLTCTLSGLKKSEGVSFTWQPSGGKDAVQASPTR 655
SLS+QPPAL DLLLGSNASLTCTLSGLK +EG SFTW P+GGK AVQ SP R
Sbjct: 251 CCVPNCEPSLSVQPPALEDLLLGSNASLTCTLSGLKSAEGASFTWNPTGGKTAVQGSPKR 310
Query: 656 DSCGCYSVSSILPGCADPWNKGETFSCTAAHSELKSALTATITKPKVNTFRPQVHLLPPP 835
DSCGCYSVSS+LPGCADPWN G+TFSC+ H E KS+LTATI K NTFRPQVHLLPPP
Sbjct: 311 DSCGCYSVSSVLPGCADPWNSGQTFSCSVTHPESKSSLTATIKKDLGNTFRPQVHLLPPP 370
Query: 836 SEELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYLVWESLPEPGQAIPTYAVTS 1015
SEELALNELVTLTCLVRGFSPK+VLVRWLQG QELPR+KYL W LPE GQ++ T+AVTS
Sbjct: 371 SEELALNELVTLTCLVRGFSPKEVLVRWLQGNQELPREKYLTWGPLPEAGQSVTTFAVTS 430
Query: 1016 VLRVDAEDWKQGDTFSCMVGHEALPLAFTQKNIDRLAGKP 1135
VLRVDAE WKQGDTFSCMVGHEALPLAFTQK IDRLAGKP
Sbjct: 431 VLRVDAEVWKQGDTFSCMVGHEALPLAFTQKTIDRLAGKP 470
Score = 34.7 bits (78), Expect(3) = e-144
Identities = 14/29 (48%), Positives = 22/29 (75%)
Frame = +1
Query: 1 SISRDDSQNTAYLQMNSLRTEDTARYYCA 87
+I++D S++ L ++S+ TEDTA YYCA
Sbjct: 87 NITKDKSKSQVSLSLSSVTTEDTATYYCA 115
Score = 32.3 bits (72), Expect(3) = e-144
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +1
Query: 1138 HVNVSVVMAEAEGICY 1185
HVNVSVVM+E +G+CY
Sbjct: 472 HVNVSVVMSEVDGVCY 487
>ref|NP_001077269.1| immunoglobulin lambda-like polypeptide 1 [Bos taurus].
Length = 235
Score = 58.2 bits (139), Expect = 2e-08
Identities = 36/100 (36%), Positives = 49/100 (49%)
Frame = +2
Query: 809 PQVHLLPPPSEELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYLVWESLPEPGQ 988
P V L PP +EEL N+ TL CL+ F P V V W G + R+ E+ Q
Sbjct: 136 PSVTLFPPSTEELNGNK-ATLVCLISDFYPGSVTVVWKADGSTITRNV----ETTRASKQ 190
Query: 989 AIPTYAVTSVLRVDAEDWKQGDTFSCMVGHEALPLAFTQK 1108
+ YA +S L + + DWK ++SC V HE + T K
Sbjct: 191 SNSKYAASSYLSLTSSDWKSKGSYSCEVTHEGSTVTKTVK 230
>ref|XP_002701782.1| PREDICTED: immunoglobulin lambda-like polypeptide 1-like [Bos
taurus].
Length = 236
Score = 58.2 bits (139), Expect = 2e-08
Identities = 35/100 (35%), Positives = 48/100 (48%)
Frame = +2
Query: 809 PQVHLLPPPSEELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYLVWESLPEPGQ 988
P V L PP EEL+ N+ TL CL+ F P V V W G + R+ ++ Q
Sbjct: 137 PSVTLFPPSKEELSANK-ATLVCLISDFYPGSVTVAWKADGSTITRNV----KTTRASKQ 191
Query: 989 AIPTYAVTSVLRVDAEDWKQGDTFSCMVGHEALPLAFTQK 1108
+ YA +S L + DWK ++SC V HE + T K
Sbjct: 192 SNSKYAASSYLSLTDSDWKSKGSYSCEVTHEGSTVTKTVK 231
>ref|XP_002694745.1| PREDICTED: IGL@ protein-like [Bos taurus].
Length = 260
Score = 56.2 bits (134), Expect = 6e-08
Identities = 36/110 (32%), Positives = 49/110 (44%)
Frame = +2
Query: 779 ITKPKVNTFRPQVHLLPPPSEELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYL 958
+T P F P V L PP +EEL+ TL CL+ F P +V V W G + R
Sbjct: 151 VTIPDQPKFPPSVTLFPPSTEELS-TYTATLVCLISDFYPGNVTVAWKADGSPVTRGVVT 209
Query: 959 VWESLPEPGQAIPTYAVTSVLRVDAEDWKQGDTFSCMVGHEALPLAFTQK 1108
S Q+ Y +S L + +WK ++SC V HE + T K
Sbjct: 210 SQAS----QQSSSKYVASSYLTLTGSEWKPKSSYSCEVTHEGSTVTKTVK 255
>ref|XP_002691399.1| PREDICTED: IGK protein-like [Bos taurus].
Length = 235
Score = 53.5 bits (127), Expect = 4e-07
Identities = 49/203 (24%), Positives = 85/203 (41%), Gaps = 11/203 (5%)
Frame = +2
Query: 512 QPPALADLLLGSNASLTCTLSGLKKSEGVSFTW-QPSGGKD------AVQASPT----RD 658
Q P+ LG S+TC S +S W Q GK A+ SP+ +
Sbjct: 26 QSPSSLSASLGDRVSITCQAS---QSIDTKLAWYQQKPGKAPKLLIYAIPRSPSWFPSQF 82
Query: 659 SCGCYSVSSILPGCADPWNKGETFSCTAAHSELKSALTATITKPKVNTFRPQVHLLPPPS 838
S + L + + T+ C + + + + T + K + P V L P
Sbjct: 83 SGSGFGADFTLTISSLKADDIATYYCLSRNCCVNTFGQGTKVEIKRSDAEPSVFLFKPSD 142
Query: 839 EELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYLVWESLPEPGQAIPTYAVTSV 1018
E+L V++ CLV F PKD+ V+W G + S + TY+++S+
Sbjct: 143 EQLKTGT-VSVVCLVNDFYPKDINVKWKVDGVTQSSSNF--QNSFTDQDSKKSTYSLSSI 199
Query: 1019 LRVDAEDWKQGDTFSCMVGHEAL 1087
L + + +++ D ++C V H++L
Sbjct: 200 LTLPSSEYQSHDAYTCEVSHKSL 222
>ref|XP_002700829.1| PREDICTED: IGK protein-like [Bos taurus].
Length = 235
Score = 53.5 bits (127), Expect = 4e-07
Identities = 49/203 (24%), Positives = 85/203 (41%), Gaps = 11/203 (5%)
Frame = +2
Query: 512 QPPALADLLLGSNASLTCTLSGLKKSEGVSFTW-QPSGGKD------AVQASPT----RD 658
Q P+ LG S+TC S +S W Q GK A+ SP+ +
Sbjct: 26 QSPSSLSASLGDRVSITCQAS---QSIDTKLAWYQQKPGKAPKLLIYAIPRSPSWFPSQF 82
Query: 659 SCGCYSVSSILPGCADPWNKGETFSCTAAHSELKSALTATITKPKVNTFRPQVHLLPPPS 838
S + L + + T+ C + + + + T + K + P V L P
Sbjct: 83 SGSGFGADFTLTISSLKADDIATYYCLSRNCCVNTFGQGTKVEIKRSDAEPSVFLFKPSD 142
Query: 839 EELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYLVWESLPEPGQAIPTYAVTSV 1018
E+L V++ CLV F PKD+ V+W G + S + TY+++S+
Sbjct: 143 EQLKTGT-VSVVCLVNDFYPKDINVKWKVDGVTQSSSNF--QNSFTDQDSKKSTYSLSSI 199
Query: 1019 LRVDAEDWKQGDTFSCMVGHEAL 1087
L + + +++ D ++C V H++L
Sbjct: 200 LTLPSSEYQSHDAYTCEVSHKSL 222
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 51,006,272
Number of extensions: 1538175
Number of successful extensions: 7436
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 7345
Number of HSP's successfully gapped: 8
Length of query: 419
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 314
Effective length of database: 14,207,134
Effective search space: 4461040076
Effective search space used: 4461040076
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001625
(1258 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_856525.1| PREDICTED: similar to Ig lambda chain C regions... 60 6e-09
Alignment gi|XP_543600.2| PREDICTED: similar to Immunoglobulin lambda-lik... 59 8e-09
Alignment gi|XP_849383.1| PREDICTED: similar to Immunoglobulin lambda-lik... 59 8e-09
Alignment gi|XP_849367.1| PREDICTED: similar to Immunoglobulin lambda-lik... 59 8e-09
Alignment gi|XP_850308.1| PREDICTED: similar to Immunoglobulin lambda-lik... 59 1e-08
Alignment gi|XP_850294.1| PREDICTED: similar to Immunoglobulin lambda-lik... 59 1e-08
Alignment gi|XP_849413.1| PREDICTED: similar to Immunoglobulin lambda-lik... 59 1e-08
Alignment gi|XP_543599.2| PREDICTED: similar to Immunoglobulin lambda-lik... 59 1e-08
Alignment gi|XP_849350.1| PREDICTED: similar to Ig lambda chain C regions... 59 1e-08
Alignment gi|XP_855821.1| PREDICTED: similar to Immunoglobulin lambda-lik... 59 1e-08
>ref|XP_856525.1| PREDICTED: similar to Ig lambda chain C regions isoform 19 [Canis
familiaris].
Length = 126
Score = 59.7 bits (143), Expect = 6e-09
Identities = 39/115 (33%), Positives = 58/115 (50%), Gaps = 5/115 (4%)
Frame = +2
Query: 752 ELKSALTATITK-PKVNTFRPQ----VHLLPPPSEELALNELVTLTCLVRGFSPKDVLVR 916
+L + T+ +T+ P + T +P+ V L PP SEEL N+ TL CL+ F P V V
Sbjct: 3 QLLTQQTSALTRCPSIPTGQPKASPSVTLFPPSSEELGANK-ATLVCLISDFYPSGVTVA 61
Query: 917 WLQGGQELPRDKYLVWESLPEPGQAIPTYAVTSVLRVDAEDWKQGDTFSCMVGHE 1081
W G + + E+ Q+ YA +S L + + WK +FSC+V HE
Sbjct: 62 WKADGSPVTQGV----ETTKPSKQSNNKYAASSYLSLTPDKWKSHSSFSCLVTHE 112
>ref|XP_543600.2| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
precursor (Immunoglobulin-related 14.1 protein)
(Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
antigen) [Canis familiaris].
Length = 141
Score = 59.3 bits (142), Expect = 8e-09
Identities = 34/91 (37%), Positives = 45/91 (49%)
Frame = +2
Query: 809 PQVHLLPPPSEELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYLVWESLPEPGQ 988
P V L PP SEEL N+ TL CL+ F P V V W G + + E+ Q
Sbjct: 42 PSVTLFPPSSEELGANK-ATLVCLISDFYPSGVTVAWKADGSPITQGV----ETTKPSKQ 96
Query: 989 AIPTYAVTSVLRVDAEDWKQGDTFSCMVGHE 1081
+ YA +S L + + WK +FSC+V HE
Sbjct: 97 SNNKYAASSYLSLTPDKWKSHSSFSCLVTHE 127
>ref|XP_849383.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
precursor (Immunoglobulin-related 14.1 protein)
(Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
antigen) [Canis familiaris].
Length = 187
Score = 59.3 bits (142), Expect = 8e-09
Identities = 43/157 (27%), Positives = 63/157 (40%)
Frame = +2
Query: 611 QPSGGKDAVQASPTRDSCGCYSVSSILPGCADPWNKGETFSCTAAHSELKSALTATITKP 790
+P+ K+ + P D CG + + L + +P
Sbjct: 52 EPASLKEVARKIPIHDECGVFGGGTHL---------------------------TVLGQP 84
Query: 791 KVNTFRPQVHLLPPPSEELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYLVWES 970
K + P V L PP SEEL N+ TL CL+ F P V V W G + + E+
Sbjct: 85 KAS---PSVTLFPPSSEELGANK-ATLVCLISDFYPSGVTVAWKADGSPVTQGV----ET 136
Query: 971 LPEPGQAIPTYAVTSVLRVDAEDWKQGDTFSCMVGHE 1081
Q+ YA +S L + + WK +FSC+V HE
Sbjct: 137 TKPSKQSNNKYAASSYLSLTPDKWKSHSSFSCLVTHE 173
>ref|XP_849367.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
precursor (Immunoglobulin-related 14.1 protein)
(Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
antigen) [Canis familiaris].
Length = 166
Score = 59.3 bits (142), Expect = 8e-09
Identities = 34/91 (37%), Positives = 45/91 (49%)
Frame = +2
Query: 809 PQVHLLPPPSEELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYLVWESLPEPGQ 988
P V L PP SEEL N+ TL CL+ F P V V W G + + E+ Q
Sbjct: 67 PSVTLFPPSSEELGANK-ATLVCLISDFYPSGVTVAWKADGSPITQGV----ETTKPSKQ 121
Query: 989 AIPTYAVTSVLRVDAEDWKQGDTFSCMVGHE 1081
+ YA +S L + + WK +FSC+V HE
Sbjct: 122 SNNKYAASSYLSLTPDKWKSHSSFSCLVTHE 152
>ref|XP_850308.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
precursor (Immunoglobulin-related 14.1 protein)
(Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
antigen) [Canis familiaris].
Length = 126
Score = 58.9 bits (141), Expect = 1e-08
Identities = 34/91 (37%), Positives = 45/91 (49%)
Frame = +2
Query: 809 PQVHLLPPPSEELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYLVWESLPEPGQ 988
P V L PP SEEL N+ TL CL+ F P V V W G + + E+ Q
Sbjct: 27 PSVTLFPPSSEELGANK-ATLVCLISDFYPSGVTVAWKADGSPVTQGV----ETTKPSKQ 81
Query: 989 AIPTYAVTSVLRVDAEDWKQGDTFSCMVGHE 1081
+ YA +S L + + WK +FSC+V HE
Sbjct: 82 SNNKYAASSYLSLTPDKWKSHSSFSCLVTHE 112
>ref|XP_850294.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
precursor (Immunoglobulin-related 14.1 protein)
(Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
antigen) [Canis familiaris].
Length = 126
Score = 58.9 bits (141), Expect = 1e-08
Identities = 34/91 (37%), Positives = 45/91 (49%)
Frame = +2
Query: 809 PQVHLLPPPSEELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYLVWESLPEPGQ 988
P V L PP SEEL N+ TL CL+ F P V V W G + + E+ Q
Sbjct: 27 PSVTLFPPSSEELGANK-ATLVCLISDFYPSGVTVAWKADGSPVTQGV----ETTKPSKQ 81
Query: 989 AIPTYAVTSVLRVDAEDWKQGDTFSCMVGHE 1081
+ YA +S L + + WK +FSC+V HE
Sbjct: 82 SNNKYAASSYLSLTPDKWKSHSSFSCLVTHE 112
>ref|XP_849413.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
precursor (Immunoglobulin-related 14.1 protein)
(Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
antigen) [Canis familiaris].
Length = 126
Score = 58.9 bits (141), Expect = 1e-08
Identities = 34/91 (37%), Positives = 45/91 (49%)
Frame = +2
Query: 809 PQVHLLPPPSEELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYLVWESLPEPGQ 988
P V L PP SEEL N+ TL CL+ F P V V W G + + E+ Q
Sbjct: 27 PSVTLFPPSSEELGANK-ATLVCLISDFYPSGVTVAWKADGSPVTQGV----ETTKPSKQ 81
Query: 989 AIPTYAVTSVLRVDAEDWKQGDTFSCMVGHE 1081
+ YA +S L + + WK +FSC+V HE
Sbjct: 82 SNNKYAASSYLSLTPDKWKSHSSFSCLVTHE 112
>ref|XP_543599.2| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
precursor (Immunoglobulin-related 14.1 protein)
(Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
antigen) [Canis familiaris].
Length = 126
Score = 58.9 bits (141), Expect = 1e-08
Identities = 34/91 (37%), Positives = 45/91 (49%)
Frame = +2
Query: 809 PQVHLLPPPSEELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYLVWESLPEPGQ 988
P V L PP SEEL N+ TL CL+ F P V V W G + + E+ Q
Sbjct: 27 PSVTLFPPSSEELGANK-ATLVCLISDFYPSGVTVAWKADGSPVTQGV----ETTKPSKQ 81
Query: 989 AIPTYAVTSVLRVDAEDWKQGDTFSCMVGHE 1081
+ YA +S L + + WK +FSC+V HE
Sbjct: 82 SNNKYAASSYLSLTPDKWKSHSSFSCLVTHE 112
>ref|XP_849350.1| PREDICTED: similar to Ig lambda chain C regions [Canis familiaris].
Length = 126
Score = 58.9 bits (141), Expect = 1e-08
Identities = 34/91 (37%), Positives = 45/91 (49%)
Frame = +2
Query: 809 PQVHLLPPPSEELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYLVWESLPEPGQ 988
P V L PP SEEL N+ TL CL+ F P V V W G + + E+ Q
Sbjct: 19 PSVTLFPPSSEELGANK-ATLVCLISDFYPSGVTVAWKADGSPVTQGV----ETTKPSKQ 73
Query: 989 AIPTYAVTSVLRVDAEDWKQGDTFSCMVGHE 1081
+ YA +S L + + WK +FSC+V HE
Sbjct: 74 SNNKYAASSYLSLTPDKWKSHSSFSCLVTHE 104
>ref|XP_855821.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
precursor (Immunoglobulin-related 14.1 protein)
(Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
antigen) isoform 3 [Canis familiaris].
Length = 231
Score = 58.9 bits (141), Expect = 1e-08
Identities = 34/91 (37%), Positives = 45/91 (49%)
Frame = +2
Query: 809 PQVHLLPPPSEELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYLVWESLPEPGQ 988
P V L PP SEEL N+ TL CL+ F P V V W G + + E+ Q
Sbjct: 132 PSVTLFPPSSEELGANK-ATLVCLISDFYPSGVTVAWKADGSPVTQGV----ETTKPSKQ 186
Query: 989 AIPTYAVTSVLRVDAEDWKQGDTFSCMVGHE 1081
+ YA +S L + + WK +FSC+V HE
Sbjct: 187 SNNKYAASSYLSLTPDKWKSHSSFSCLVTHE 217
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 52,930,862
Number of extensions: 1555582
Number of successful extensions: 7836
Number of sequences better than 1.0e-05: 108
Number of HSP's gapped: 7602
Number of HSP's successfully gapped: 225
Length of query: 419
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 314
Effective length of database: 15,374,224
Effective search space: 4827506336
Effective search space used: 4827506336
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001625
(1258 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001171597.1| immunoglobulin lambda-like polypeptide 5 [Ho... 57 4e-08
Alignment gi|NP_064455.1| immunoglobulin lambda-like polypeptide 1 isofor... 53 5e-07
Alignment gi|XP_003403714.1| PREDICTED: hypothetical protein LOC100653084... 50 6e-06
>ref|NP_001171597.1| immunoglobulin lambda-like polypeptide 5 [Homo sapiens].
Length = 214
Score = 57.0 bits (136), Expect = 4e-08
Identities = 37/99 (37%), Positives = 47/99 (47%)
Frame = +2
Query: 785 KPKVNTFRPQVHLLPPPSEELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYLVW 964
+PK N P V L PP SEEL N+ TL CL+ F P V V W G +
Sbjct: 110 QPKAN---PTVTLFPPSSEELQANK-ATLVCLISDFYPGAVTVAWKADGSPVKAGV---- 161
Query: 965 ESLPEPGQAIPTYAVTSVLRVDAEDWKQGDTFSCMVGHE 1081
E+ Q+ YA +S L + E WK ++SC V HE
Sbjct: 162 ETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHE 200
>ref|NP_064455.1| immunoglobulin lambda-like polypeptide 1 isoform a precursor [Homo
sapiens].
Length = 213
Score = 53.1 bits (126), Expect = 5e-07
Identities = 34/101 (33%), Positives = 49/101 (48%)
Frame = +2
Query: 779 ITKPKVNTFRPQVHLLPPPSEELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYL 958
+++PK P V L PP SEEL N+ TL CL+ F P + V W G + + +
Sbjct: 107 LSQPKAT---PSVTLFPPSSEELQANK-ATLVCLMNDFYPGILTVTWKADGTPITQGVEM 162
Query: 959 VWESLPEPGQAIPTYAVTSVLRVDAEDWKQGDTFSCMVGHE 1081
S Q+ YA +S L + E W+ ++SC V HE
Sbjct: 163 TTPSK----QSNNKYAASSYLSLTPEQWRSRRSYSCQVMHE 199
>ref|XP_003403714.1| PREDICTED: hypothetical protein LOC100653084 [Homo sapiens].
Length = 279
Score = 49.7 bits (117), Expect = 6e-06
Identities = 22/29 (75%), Positives = 26/29 (89%)
Frame = +1
Query: 1 SISRDDSQNTAYLQMNSLRTEDTARYYCA 87
+ISRD+S+N+ YLQMNSLR EDTA YYCA
Sbjct: 88 TISRDNSKNSLYLQMNSLRAEDTALYYCA 116
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 51,881,981
Number of extensions: 1527899
Number of successful extensions: 7311
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7218
Number of HSP's successfully gapped: 3
Length of query: 419
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 314
Effective length of database: 14,835,944
Effective search space: 4658486416
Effective search space used: 4658486416
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001625
(1258 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001472141.2| PREDICTED: hypothetical protein LOC16061 [Mu... 385 e-108
Alignment gi|XP_003085513.1| PREDICTED: ig alpha chain C region [Mus musc... 383 e-108
Alignment gi|XP_001474075.2| PREDICTED: ig alpha chain C region isoform 1... 383 e-108
>ref|XP_001472141.2| PREDICTED: hypothetical protein LOC16061 [Mus musculus].
Length = 349
Score = 385 bits (988), Expect(2) = e-108
Identities = 195/324 (60%), Positives = 230/324 (70%), Gaps = 7/324 (2%)
Frame = +2
Query: 185 SPKIFPLTLGSSEPAGYVVIACLVRDFFPSEPLTVTWSPSREGVIVRNFPPAQA-GGLYT 361
+P I+PLTL + + V+I CL+ D+FPS + VTW S + + NFPPA A GG YT
Sbjct: 10 NPTIYPLTLPRALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGGYT 69
Query: 362 MSSQLTLPVEQCPADQILKCQVQHLSKSSQSVNVXXXXXXXXXXXX------SLSLQPPA 523
MSSQLTLP +CP + +KC VQH S + Q +NV SLSLQ PA
Sbjct: 70 MSSQLTLPAVECPEGESVKCSVQHDSNAVQELNVKCSGPPPPTTPPPPSCQPSLSLQRPA 129
Query: 524 LADLLLGSNASLTCTLSGLKKSEGVSFTWQPSGGKDAVQASPTRDSCGCYSVSSILPGCA 703
L DLLLGS+AS+TCTL+GL+ EG FTW+PS GKDAVQ ++SCGCYSVSS+LPGCA
Sbjct: 130 LEDLLLGSDASITCTLNGLRNPEGAVFTWEPSTGKDAVQKKAVQNSCGCYSVSSVLPGCA 189
Query: 704 DPWNKGETFSCTAAHSELKSALTATITKPKVNTFRPQVHLLPPPSEELALNELVTLTCLV 883
+ WN G +F CT H E LT TI K VNTF PQVHLLPPPSEELALNELV+LTCLV
Sbjct: 190 ERWNSGASFKCTVTHPE-SDTLTGTIAKITVNTFPPQVHLLPPPSEELALNELVSLTCLV 248
Query: 884 RGFSPKDVLVRWLQGGQELPRDKYLVWESLPEPGQAIPTYAVTSVLRVDAEDWKQGDTFS 1063
R F+PK+VLVRWL G +EL + YLV+E L EPG+ TY VTSVLRV AE WKQGD +S
Sbjct: 249 RAFNPKEVLVRWLHGNEELSPESYLVFEPLKEPGEGATTYLVTSVLRVSAEIWKQGDQYS 308
Query: 1064 CMVGHEALPLAFTQKNIDRLAGKP 1135
CMVGHEALP+ FTQK IDRL+GKP
Sbjct: 309 CMVGHEALPMNFTQKTIDRLSGKP 332
Score = 27.7 bits (60), Expect(2) = e-108
Identities = 10/16 (62%), Positives = 15/16 (93%)
Frame = +1
Query: 1138 HVNVSVVMAEAEGICY 1185
+V+VSV+M+E +GICY
Sbjct: 334 NVSVSVIMSEGDGICY 349
>ref|XP_003085513.1| PREDICTED: ig alpha chain C region [Mus musculus].
Length = 413
Score = 383 bits (983), Expect(2) = e-108
Identities = 193/324 (59%), Positives = 229/324 (70%), Gaps = 7/324 (2%)
Frame = +2
Query: 185 SPKIFPLTLGSSEPAGYVVIACLVRDFFPSEPLTVTWSPSREGVIVRNFPPAQA-GGLYT 361
+P I+PLTL + + V+I CL+ D+FPS + VTW S + + NFPPA A GG YT
Sbjct: 74 NPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYT 133
Query: 362 MSSQLTLPVEQCPADQILKCQVQHLSKSSQSVNVXXXXXXXXXXXX------SLSLQPPA 523
MSSQLTLP +CP + +KC VQH S Q ++V SLSLQ PA
Sbjct: 134 MSSQLTLPAVECPEGESVKCSVQHDSNPVQELDVNCSGPTPPPPITIPSCQPSLSLQRPA 193
Query: 524 LADLLLGSNASLTCTLSGLKKSEGVSFTWQPSGGKDAVQASPTRDSCGCYSVSSILPGCA 703
L DLLLGS+AS+TCTL+GL+ EG FTW+PS GKDAVQ ++SCGCYSVSS+LPGCA
Sbjct: 194 LEDLLLGSDASITCTLNGLRNPEGAVFTWEPSTGKDAVQKKAVQNSCGCYSVSSVLPGCA 253
Query: 704 DPWNKGETFSCTAAHSELKSALTATITKPKVNTFRPQVHLLPPPSEELALNELVTLTCLV 883
+ WN G +F CT H E LT TI K VNTF PQVHLLPPPSEELALNEL++LTCLV
Sbjct: 254 ERWNSGASFKCTVTHPE-SGTLTGTIAKVTVNTFPPQVHLLPPPSEELALNELLSLTCLV 312
Query: 884 RGFSPKDVLVRWLQGGQELPRDKYLVWESLPEPGQAIPTYAVTSVLRVDAEDWKQGDTFS 1063
R F+PK+VLVRWL G +EL + YLV+E L EPG+ TY VTSVLRV AE WKQGD +S
Sbjct: 313 RAFNPKEVLVRWLHGNEELSPESYLVFEPLKEPGEGATTYLVTSVLRVSAETWKQGDQYS 372
Query: 1064 CMVGHEALPLAFTQKNIDRLAGKP 1135
CMVGHEALP+ FTQK IDRL+GKP
Sbjct: 373 CMVGHEALPMNFTQKTIDRLSGKP 396
Score = 27.7 bits (60), Expect(2) = e-108
Identities = 10/16 (62%), Positives = 15/16 (93%)
Frame = +1
Query: 1138 HVNVSVVMAEAEGICY 1185
+V+VSV+M+E +GICY
Sbjct: 398 NVSVSVIMSEGDGICY 413
>ref|XP_001474075.2| PREDICTED: ig alpha chain C region isoform 1 [Mus musculus].
Length = 354
Score = 383 bits (983), Expect(2) = e-108
Identities = 193/324 (59%), Positives = 229/324 (70%), Gaps = 7/324 (2%)
Frame = +2
Query: 185 SPKIFPLTLGSSEPAGYVVIACLVRDFFPSEPLTVTWSPSREGVIVRNFPPAQA-GGLYT 361
+P I+PLTL + + V+I CL+ D+FPS + VTW S + + NFPPA A GG YT
Sbjct: 15 NPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYT 74
Query: 362 MSSQLTLPVEQCPADQILKCQVQHLSKSSQSVNVXXXXXXXXXXXX------SLSLQPPA 523
MSSQLTLP +CP + +KC VQH S Q ++V SLSLQ PA
Sbjct: 75 MSSQLTLPAVECPEGESVKCSVQHDSNPVQELDVNCSGPTPPPPITIPSCQPSLSLQRPA 134
Query: 524 LADLLLGSNASLTCTLSGLKKSEGVSFTWQPSGGKDAVQASPTRDSCGCYSVSSILPGCA 703
L DLLLGS+AS+TCTL+GL+ EG FTW+PS GKDAVQ ++SCGCYSVSS+LPGCA
Sbjct: 135 LEDLLLGSDASITCTLNGLRNPEGAVFTWEPSTGKDAVQKKAVQNSCGCYSVSSVLPGCA 194
Query: 704 DPWNKGETFSCTAAHSELKSALTATITKPKVNTFRPQVHLLPPPSEELALNELVTLTCLV 883
+ WN G +F CT H E LT TI K VNTF PQVHLLPPPSEELALNEL++LTCLV
Sbjct: 195 ERWNSGASFKCTVTHPE-SGTLTGTIAKVTVNTFPPQVHLLPPPSEELALNELLSLTCLV 253
Query: 884 RGFSPKDVLVRWLQGGQELPRDKYLVWESLPEPGQAIPTYAVTSVLRVDAEDWKQGDTFS 1063
R F+PK+VLVRWL G +EL + YLV+E L EPG+ TY VTSVLRV AE WKQGD +S
Sbjct: 254 RAFNPKEVLVRWLHGNEELSPESYLVFEPLKEPGEGATTYLVTSVLRVSAETWKQGDQYS 313
Query: 1064 CMVGHEALPLAFTQKNIDRLAGKP 1135
CMVGHEALP+ FTQK IDRL+GKP
Sbjct: 314 CMVGHEALPMNFTQKTIDRLSGKP 337
Score = 27.7 bits (60), Expect(2) = e-108
Identities = 10/16 (62%), Positives = 15/16 (93%)
Frame = +1
Query: 1138 HVNVSVVMAEAEGICY 1185
+V+VSV+M+E +GICY
Sbjct: 339 NVSVSVIMSEGDGICY 354
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 43,694,379
Number of extensions: 1268249
Number of successful extensions: 5976
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5877
Number of HSP's successfully gapped: 6
Length of query: 419
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 315
Effective length of database: 12,493,815
Effective search space: 3935551725
Effective search space used: 3935551725
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001625
(1258 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_998993.1| IgG heavy chain [Sus scrofa]. 166 8e-52
Alignment gi|NP_001230248.1| immunoglobulin lambda-like polypeptide 5 [Su... 63 3e-10
Alignment gi|XP_003359207.1| PREDICTED: immunoglobulin lambda-like polype... 63 4e-10
Alignment gi|XP_003133034.1| PREDICTED: immunoglobulin lambda-like polype... 59 7e-09
>ref|NP_998993.1| IgG heavy chain [Sus scrofa].
Length = 474
Score = 166 bits (420), Expect(2) = 8e-52
Identities = 116/350 (33%), Positives = 166/350 (47%), Gaps = 16/350 (4%)
Frame = +2
Query: 131 MDLWGPGXXXXXXXXXXTSPKIFPLTLGSSEPAG-YVVIACLVRDFFPSEPLTVTWSPSR 307
MDLWGPG T+P ++PL + +G V + CL +FP EP+T+TW+
Sbjct: 133 MDLWGPGVEVVVSSAPKTAPSVYPLAPCGRDTSGPNVALGCLASSYFP-EPVTMTWNSGA 191
Query: 308 EGVIVRNFPPA-QAGGLYTMSSQLTLPVEQCPADQILKCQVQH---LSKSSQSVNVXXXX 475
V FP Q GLY++SS +T+P + + C V H +K + V
Sbjct: 192 LTSGVHTFPSVLQPSGLYSLSSMVTVPASSL-SSKSYTCNVNHPATTTKVDKRVGTKTKP 250
Query: 476 XXXXXXXX-----SLSLQPPALAD-LLLGSNASLTCTLSGLKKSEG-VSFTWQPSGGKDA 634
S+ + PP D L++ +TC + + K V F+W G +
Sbjct: 251 PCPICPGCEVAGPSVFIFPPKPKDTLMISQTPEVTCVVVDVSKEHAEVQFSWYVDGVE-- 308
Query: 635 VQASPTRDS----CGCYSVSSILPGCADPWNKGETFSCTAAHSELKSALTATITKPKVNT 802
V + TR Y V S+LP W KG+ F C + +L + +T TI+K +
Sbjct: 309 VHTAETRPKEEQFNSTYRVVSVLPIQHQDWLKGKEFKCKVNNVDLPAPITRTISKAIGQS 368
Query: 803 FRPQVHLLPPPSEELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYLVWESLPEP 982
PQV+ LPPP+EEL+ ++ VT+TCLV GF P D+ V W GQ P Y + P
Sbjct: 369 REPQVYTLPPPAEELSRSK-VTVTCLVIGFYPPDIHVEWKSNGQPEPEGNY---RTTPPQ 424
Query: 983 GQAIPTYAVTSVLRVDAEDWKQGDTFSCMVGHEALPLAFTQKNIDRLAGK 1132
T+ + S L VD W G+TF C V HEAL +TQK+I + GK
Sbjct: 425 QDVDGTFFLYSKLAVDKARWDHGETFECAVMHEALHNHYTQKSISKTQGK 474
Score = 56.6 bits (135), Expect(2) = 8e-52
Identities = 26/29 (89%), Positives = 28/29 (96%)
Frame = +1
Query: 1 SISRDDSQNTAYLQMNSLRTEDTARYYCA 87
+ISRD+SQNTAYLQMNSLRTEDTA YYCA
Sbjct: 87 TISRDNSQNTAYLQMNSLRTEDTALYYCA 115
>ref|NP_001230248.1| immunoglobulin lambda-like polypeptide 5 [Sus scrofa].
Length = 234
Score = 63.2 bits (152), Expect = 3e-10
Identities = 64/213 (30%), Positives = 92/213 (43%), Gaps = 22/213 (10%)
Frame = +2
Query: 509 LQPPALADLLLGSNASLTCTLS-GLKKSEGVSFTWQPSGG---KDAVQASPTRDSCGCYS 676
+Q PA++ + LG +LTC S G S +Q + G + + ++ +R +
Sbjct: 23 IQEPAMS-VSLGGTVTLTCAFSSGSVTSSDYPGWFQQTPGQPPRTVIYSTNSRPTGVPSR 81
Query: 677 VSSILPGCADPWNKGETFSCTAAHSE---------LKSALTAT---------ITKPKVNT 802
S + G NK T + T A +E KS T T + +PK
Sbjct: 82 FSGAISG-----NKA-TLTITGAQAEDEADYFCALRKSGGTVTFGGGTHVTVLGQPKA-- 133
Query: 803 FRPQVHLLPPPSEELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYLVWESLPEP 982
P V+L PP SEEL N+ TL CL+ F P V V W GG + + E+
Sbjct: 134 -APTVNLFPPSSEELGTNK-ATLVCLISDFYPGAVTVTWKAGGTTVTQGV----ETTKPS 187
Query: 983 GQAIPTYAVTSVLRVDAEDWKQGDTFSCMVGHE 1081
Q+ YA +S L + A DWK F+C V HE
Sbjct: 188 KQSNNKYAASSYLALSASDWKSSSGFTCQVTHE 220
>ref|XP_003359207.1| PREDICTED: immunoglobulin lambda-like polypeptide 5-like [Sus
scrofa].
Length = 233
Score = 62.8 bits (151), Expect = 4e-10
Identities = 36/91 (39%), Positives = 46/91 (50%)
Frame = +2
Query: 809 PQVHLLPPPSEELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYLVWESLPEPGQ 988
P V+L PP SEEL N+ TL CL+ F P V V W GG + + E+ Q
Sbjct: 134 PTVNLFPPSSEELGTNK-ATLVCLISDFYPGAVTVTWKAGGTTVTQGV----ETTKPSKQ 188
Query: 989 AIPTYAVTSVLRVDAEDWKQGDTFSCMVGHE 1081
+ YA +S L + A DWK F+C V HE
Sbjct: 189 SNNKYAASSYLALSASDWKSSSGFTCQVTHE 219
>ref|XP_003133034.1| PREDICTED: immunoglobulin lambda-like polypeptide 5-like [Sus
scrofa].
Length = 211
Score = 58.5 bits (140), Expect = 7e-09
Identities = 36/91 (39%), Positives = 46/91 (50%)
Frame = +2
Query: 809 PQVHLLPPPSEELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYLVWESLPEPGQ 988
P V L PP EEL+ N+ TL CL+ F P V V W GG + + V S P Q
Sbjct: 112 PTVTLFPPSPEELSTNK-ATLVCLISDFYPGAVTVTWKAGGTTITQG---VDTSQPSK-Q 166
Query: 989 AIPTYAVTSVLRVDAEDWKQGDTFSCMVGHE 1081
+ YA +S L + A DWK F+C V H+
Sbjct: 167 SNNKYAASSYLALSASDWKSSSGFTCQVTHQ 197
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,145,578
Number of extensions: 1020041
Number of successful extensions: 4730
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4659
Number of HSP's successfully gapped: 5
Length of query: 419
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 317
Effective length of database: 8,804,438
Effective search space: 2791006846
Effective search space used: 2791006846
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001625
(1258 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896422.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 595 e-167
gb|GL896114.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 137 2e-29
>gb|GL896422.1| Sus scrofa unplaced genomic scaffold chrU_scaffold764
Length = 7672
Score = 595 bits (300), Expect = e-167
Identities = 303/304 (99%)
Strand = Plus / Plus
Query: 170 tcagtgtctgaaaccagccccaaaatcttcccactgactctggggagcagcgagcctgcc 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1885 tcagtgtctgaaaccagccccaaaatcttcccactgactctggggagcagcgagcctgcc 1944
Query: 230 ggatatgtggtcatcgcctgcctggtccgggacttcttcccgtcagagcccctgacagta 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1945 ggatatgtggtcatcgcctgcctggtccgggacttcttcccgtcagagcccctgacagta 2004
Query: 290 acctggagccctagtcgcgagggcgttattgtcagaaacttcccccctgcgcaggccggg 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2005 acctggagccctagtcgcgagggcgttattgtcagaaacttcccccctgcgcaggccggg 2064
Query: 350 ggcctgtacaccatgagcagccagctgaccttgccagtcgagcagtgcccagccgatcag 409
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2065 ggcctgtacaccatgagcagccaggtgaccttgccagtcgagcagtgcccagccgatcag 2124
Query: 410 atcctgaagtgccaagtgcagcacctctccaaatccagccagtccgtgaacgtgccctgc 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2125 atcctgaagtgccaagtgcagcacctctccaaatccagccagtccgtgaacgtgccctgc 2184
Query: 470 aaag 473
||||
Sbjct: 2185 aaag 2188
Score = 563 bits (284), Expect = e-158
Identities = 287/288 (99%)
Strand = Plus / Plus
Query: 472 agatccatgtccccagtgctgcaagcccagcctgtccctgcagccaccagcccttgcaga 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2346 agatccatgtccccagtgctgcaagcccagcctgtccctgcagccaccagcccttgcaga 2405
Query: 532 cctgctcctgggctccaatgccagcctcacgtgcacactcagtggcctgaaaaaatccga 591
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 2406 cctgctcctgggctccaatgccagcctcacctgcacactcagtggcctgaaaaaatccga 2465
Query: 592 gggtgtcagcttcacctggcagccctcaggtgggaaggatgccgtccaggcgtcccccac 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2466 gggtgtcagcttcacctggcagccctcaggtgggaaggatgccgtccaggcgtcccccac 2525
Query: 652 gcgtgattcctgtggctgctacagcgtgtccagcatcctgccaggctgtgctgatccttg 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2526 gcgtgattcctgtggctgctacagcgtgtccagcatcctgccaggctgtgctgatccttg 2585
Query: 712 gaacaaaggagagacattctcctgcaccgccgcccactctgagttgaa 759
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2586 gaacaaaggagagacattctcctgcaccgccgcccactctgagttgaa 2633
Score = 365 bits (184), Expect = 4e-98
Identities = 184/184 (100%)
Strand = Plus / Plus
Query: 793 agtgaacacgttccggccccaggtccacctgctgccgccgccgtcggaggagctggccct 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2869 agtgaacacgttccggccccaggtccacctgctgccgccgccgtcggaggagctggccct 2928
Query: 853 caatgagctggtgacactgacatgcctggtgcggggcttcagccccaaggatgtgctggt 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2929 caatgagctggtgacactgacatgcctggtgcggggcttcagccccaaggatgtgctggt 2988
Query: 913 gcgatggctgcaagggggccaggaactgccccgtgacaagtacctcgtctgggaatccct 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2989 gcgatggctgcaagggggccaggaactgccccgtgacaagtacctcgtctgggaatccct 3048
Query: 973 gcca 976
||||
Sbjct: 3049 gcca 3052
Score = 232 bits (117), Expect = 4e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 993 tccccacctacgccgtgaccagcgtgctgcgcgtggacgccgaggactggaagcagggag 1052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3153 tccccacctacgccgtgaccagcgtgctgcgcgtggacgccgaggactggaagcagggag 3212
Query: 1053 acaccttctcctgcatggtgggccacgaggccctgcccctggccttcacccagaaga 1109
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3213 acaccttctcctgcatggtgggccacgaggccctgcccctggccttcacccagaaga 3269
Score = 83.8 bits (42), Expect = 2e-13
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 1191 cgccccgcccactcgcccctcgaataaactccgtgctcgctt 1232
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3379 cgccccgcccactcgcccctcgaataaactccgtgctcgctt 3420
>gb|GL896114.1| Sus scrofa unplaced genomic scaffold chrU_scaffold487
Length = 3028
Score = 137 bits (69), Expect = 2e-29
Identities = 81/85 (95%)
Strand = Plus / Minus
Query: 3 catctccagagacgactcccagaacacggcctatctgcaaatgaacagcctgagaacaga 62
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2550 catctccagcgacaactcccagaacacggcctatctgcaaatgaacagcctgagaaccga 2491
Query: 63 agacacggcccgctattattgtgca 87
|||||||||||||||||| ||||||
Sbjct: 2490 agacacggcccgctattactgtgca 2466
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,237,297
Number of extensions: 200
Number of successful extensions: 200
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 6
Length of query: 1258
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1237
Effective length of database: 2,808,413,156
Effective search space: 3474007073972
Effective search space used: 3474007073972
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)