Animal-Genome cDNA 20110601C-001625


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001625
         (1258 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001192115.1| hypothetical protein LOC524810 [Bos taurus].      485   e-144
Alignment   gi|NP_001077269.1| immunoglobulin lambda-like polypeptide 1 [Bo...    58   2e-08
Alignment   gi|XP_002701782.1| PREDICTED: immunoglobulin lambda-like polype...    58   2e-08
Alignment   gi|XP_002694745.1| PREDICTED: IGL@ protein-like [Bos taurus].         56   6e-08
Alignment   gi|XP_002691399.1| PREDICTED: IGK protein-like [Bos taurus].          54   4e-07
Alignment   gi|XP_002700829.1| PREDICTED: IGK protein-like [Bos taurus].          54   4e-07

>ref|NP_001192115.1| hypothetical protein LOC524810 [Bos taurus].
          Length = 487

 Score =  485 bits (1249), Expect(3) = e-144
 Identities = 240/340 (70%), Positives = 266/340 (78%), Gaps = 5/340 (1%)
 Frame = +2

Query: 131  MDLWGPGXXXXXXXXXXTSPKIFPLTLGSSEPAGYVVIACLVRDFFPSEPLTVTWSPSRE 310
            +D WG G          TSP IFPL+LG+++PAG VVI CLV+ FFPS PL+VTW+ + +
Sbjct: 131  IDAWGQGLLVTVSSESETSPSIFPLSLGNNDPAGQVVIGCLVQGFFPSAPLSVTWNQNGD 190

Query: 311  GVIVRNFPPAQAGGLYTMSSQLTLPVEQCPADQILKCQVQHLSKSSQSVNVXXXXXXXXX 490
             V VRNFP   AG LYTMSSQLTLP   CP  Q + CQVQHLSK+S++V V         
Sbjct: 191  SVSVRNFPAVLAGSLYTMSSQLTLPASLCPKGQSVTCQVQHLSKASKTVAVPCIIQDSSS 250

Query: 491  XXX-----SLSLQPPALADLLLGSNASLTCTLSGLKKSEGVSFTWQPSGGKDAVQASPTR 655
                    SLS+QPPAL DLLLGSNASLTCTLSGLK +EG SFTW P+GGK AVQ SP R
Sbjct: 251  CCVPNCEPSLSVQPPALEDLLLGSNASLTCTLSGLKSAEGASFTWNPTGGKTAVQGSPKR 310

Query: 656  DSCGCYSVSSILPGCADPWNKGETFSCTAAHSELKSALTATITKPKVNTFRPQVHLLPPP 835
            DSCGCYSVSS+LPGCADPWN G+TFSC+  H E KS+LTATI K   NTFRPQVHLLPPP
Sbjct: 311  DSCGCYSVSSVLPGCADPWNSGQTFSCSVTHPESKSSLTATIKKDLGNTFRPQVHLLPPP 370

Query: 836  SEELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYLVWESLPEPGQAIPTYAVTS 1015
            SEELALNELVTLTCLVRGFSPK+VLVRWLQG QELPR+KYL W  LPE GQ++ T+AVTS
Sbjct: 371  SEELALNELVTLTCLVRGFSPKEVLVRWLQGNQELPREKYLTWGPLPEAGQSVTTFAVTS 430

Query: 1016 VLRVDAEDWKQGDTFSCMVGHEALPLAFTQKNIDRLAGKP 1135
            VLRVDAE WKQGDTFSCMVGHEALPLAFTQK IDRLAGKP
Sbjct: 431  VLRVDAEVWKQGDTFSCMVGHEALPLAFTQKTIDRLAGKP 470



 Score = 34.7 bits (78), Expect(3) = e-144
 Identities = 14/29 (48%), Positives = 22/29 (75%)
 Frame = +1

Query: 1   SISRDDSQNTAYLQMNSLRTEDTARYYCA 87
           +I++D S++   L ++S+ TEDTA YYCA
Sbjct: 87  NITKDKSKSQVSLSLSSVTTEDTATYYCA 115



 Score = 32.3 bits (72), Expect(3) = e-144
 Identities = 12/16 (75%), Positives = 15/16 (93%)
 Frame = +1

Query: 1138 HVNVSVVMAEAEGICY 1185
            HVNVSVVM+E +G+CY
Sbjct: 472  HVNVSVVMSEVDGVCY 487


>ref|NP_001077269.1| immunoglobulin lambda-like polypeptide 1 [Bos taurus].
          Length = 235

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 36/100 (36%), Positives = 49/100 (49%)
 Frame = +2

Query: 809  PQVHLLPPPSEELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYLVWESLPEPGQ 988
            P V L PP +EEL  N+  TL CL+  F P  V V W   G  + R+     E+     Q
Sbjct: 136  PSVTLFPPSTEELNGNK-ATLVCLISDFYPGSVTVVWKADGSTITRNV----ETTRASKQ 190

Query: 989  AIPTYAVTSVLRVDAEDWKQGDTFSCMVGHEALPLAFTQK 1108
            +   YA +S L + + DWK   ++SC V HE   +  T K
Sbjct: 191  SNSKYAASSYLSLTSSDWKSKGSYSCEVTHEGSTVTKTVK 230


>ref|XP_002701782.1| PREDICTED: immunoglobulin lambda-like polypeptide 1-like [Bos
            taurus].
          Length = 236

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 35/100 (35%), Positives = 48/100 (48%)
 Frame = +2

Query: 809  PQVHLLPPPSEELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYLVWESLPEPGQ 988
            P V L PP  EEL+ N+  TL CL+  F P  V V W   G  + R+     ++     Q
Sbjct: 137  PSVTLFPPSKEELSANK-ATLVCLISDFYPGSVTVAWKADGSTITRNV----KTTRASKQ 191

Query: 989  AIPTYAVTSVLRVDAEDWKQGDTFSCMVGHEALPLAFTQK 1108
            +   YA +S L +   DWK   ++SC V HE   +  T K
Sbjct: 192  SNSKYAASSYLSLTDSDWKSKGSYSCEVTHEGSTVTKTVK 231


>ref|XP_002694745.1| PREDICTED: IGL@ protein-like [Bos taurus].
          Length = 260

 Score = 56.2 bits (134), Expect = 6e-08
 Identities = 36/110 (32%), Positives = 49/110 (44%)
 Frame = +2

Query: 779  ITKPKVNTFRPQVHLLPPPSEELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYL 958
            +T P    F P V L PP +EEL+     TL CL+  F P +V V W   G  + R    
Sbjct: 151  VTIPDQPKFPPSVTLFPPSTEELS-TYTATLVCLISDFYPGNVTVAWKADGSPVTRGVVT 209

Query: 959  VWESLPEPGQAIPTYAVTSVLRVDAEDWKQGDTFSCMVGHEALPLAFTQK 1108
               S     Q+   Y  +S L +   +WK   ++SC V HE   +  T K
Sbjct: 210  SQAS----QQSSSKYVASSYLTLTGSEWKPKSSYSCEVTHEGSTVTKTVK 255


>ref|XP_002691399.1| PREDICTED: IGK protein-like [Bos taurus].
          Length = 235

 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 49/203 (24%), Positives = 85/203 (41%), Gaps = 11/203 (5%)
 Frame = +2

Query: 512  QPPALADLLLGSNASLTCTLSGLKKSEGVSFTW-QPSGGKD------AVQASPT----RD 658
            Q P+     LG   S+TC  S   +S      W Q   GK       A+  SP+    + 
Sbjct: 26   QSPSSLSASLGDRVSITCQAS---QSIDTKLAWYQQKPGKAPKLLIYAIPRSPSWFPSQF 82

Query: 659  SCGCYSVSSILPGCADPWNKGETFSCTAAHSELKSALTATITKPKVNTFRPQVHLLPPPS 838
            S   +     L   +   +   T+ C + +  + +    T  + K +   P V L  P  
Sbjct: 83   SGSGFGADFTLTISSLKADDIATYYCLSRNCCVNTFGQGTKVEIKRSDAEPSVFLFKPSD 142

Query: 839  EELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYLVWESLPEPGQAIPTYAVTSV 1018
            E+L     V++ CLV  F PKD+ V+W   G       +    S  +      TY+++S+
Sbjct: 143  EQLKTGT-VSVVCLVNDFYPKDINVKWKVDGVTQSSSNF--QNSFTDQDSKKSTYSLSSI 199

Query: 1019 LRVDAEDWKQGDTFSCMVGHEAL 1087
            L + + +++  D ++C V H++L
Sbjct: 200  LTLPSSEYQSHDAYTCEVSHKSL 222


>ref|XP_002700829.1| PREDICTED: IGK protein-like [Bos taurus].
          Length = 235

 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 49/203 (24%), Positives = 85/203 (41%), Gaps = 11/203 (5%)
 Frame = +2

Query: 512  QPPALADLLLGSNASLTCTLSGLKKSEGVSFTW-QPSGGKD------AVQASPT----RD 658
            Q P+     LG   S+TC  S   +S      W Q   GK       A+  SP+    + 
Sbjct: 26   QSPSSLSASLGDRVSITCQAS---QSIDTKLAWYQQKPGKAPKLLIYAIPRSPSWFPSQF 82

Query: 659  SCGCYSVSSILPGCADPWNKGETFSCTAAHSELKSALTATITKPKVNTFRPQVHLLPPPS 838
            S   +     L   +   +   T+ C + +  + +    T  + K +   P V L  P  
Sbjct: 83   SGSGFGADFTLTISSLKADDIATYYCLSRNCCVNTFGQGTKVEIKRSDAEPSVFLFKPSD 142

Query: 839  EELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYLVWESLPEPGQAIPTYAVTSV 1018
            E+L     V++ CLV  F PKD+ V+W   G       +    S  +      TY+++S+
Sbjct: 143  EQLKTGT-VSVVCLVNDFYPKDINVKWKVDGVTQSSSNF--QNSFTDQDSKKSTYSLSSI 199

Query: 1019 LRVDAEDWKQGDTFSCMVGHEAL 1087
            L + + +++  D ++C V H++L
Sbjct: 200  LTLPSSEYQSHDAYTCEVSHKSL 222


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 51,006,272
Number of extensions: 1538175
Number of successful extensions: 7436
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 7345
Number of HSP's successfully gapped: 8
Length of query: 419
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 314
Effective length of database: 14,207,134
Effective search space: 4461040076
Effective search space used: 4461040076
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001625
         (1258 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_856525.1| PREDICTED: similar to Ig lambda chain C regions...    60   6e-09
Alignment   gi|XP_543600.2| PREDICTED: similar to Immunoglobulin lambda-lik...    59   8e-09
Alignment   gi|XP_849383.1| PREDICTED: similar to Immunoglobulin lambda-lik...    59   8e-09
Alignment   gi|XP_849367.1| PREDICTED: similar to Immunoglobulin lambda-lik...    59   8e-09
Alignment   gi|XP_850308.1| PREDICTED: similar to Immunoglobulin lambda-lik...    59   1e-08
Alignment   gi|XP_850294.1| PREDICTED: similar to Immunoglobulin lambda-lik...    59   1e-08
Alignment   gi|XP_849413.1| PREDICTED: similar to Immunoglobulin lambda-lik...    59   1e-08
Alignment   gi|XP_543599.2| PREDICTED: similar to Immunoglobulin lambda-lik...    59   1e-08
Alignment   gi|XP_849350.1| PREDICTED: similar to Ig lambda chain C regions...    59   1e-08
Alignment   gi|XP_855821.1| PREDICTED: similar to Immunoglobulin lambda-lik...    59   1e-08

>ref|XP_856525.1| PREDICTED: similar to Ig lambda chain C regions isoform 19 [Canis
            familiaris].
          Length = 126

 Score = 59.7 bits (143), Expect = 6e-09
 Identities = 39/115 (33%), Positives = 58/115 (50%), Gaps = 5/115 (4%)
 Frame = +2

Query: 752  ELKSALTATITK-PKVNTFRPQ----VHLLPPPSEELALNELVTLTCLVRGFSPKDVLVR 916
            +L +  T+ +T+ P + T +P+    V L PP SEEL  N+  TL CL+  F P  V V 
Sbjct: 3    QLLTQQTSALTRCPSIPTGQPKASPSVTLFPPSSEELGANK-ATLVCLISDFYPSGVTVA 61

Query: 917  WLQGGQELPRDKYLVWESLPEPGQAIPTYAVTSVLRVDAEDWKQGDTFSCMVGHE 1081
            W   G  + +      E+     Q+   YA +S L +  + WK   +FSC+V HE
Sbjct: 62   WKADGSPVTQGV----ETTKPSKQSNNKYAASSYLSLTPDKWKSHSSFSCLVTHE 112


>ref|XP_543600.2| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
            precursor (Immunoglobulin-related 14.1 protein)
            (Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
            antigen) [Canis familiaris].
          Length = 141

 Score = 59.3 bits (142), Expect = 8e-09
 Identities = 34/91 (37%), Positives = 45/91 (49%)
 Frame = +2

Query: 809  PQVHLLPPPSEELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYLVWESLPEPGQ 988
            P V L PP SEEL  N+  TL CL+  F P  V V W   G  + +      E+     Q
Sbjct: 42   PSVTLFPPSSEELGANK-ATLVCLISDFYPSGVTVAWKADGSPITQGV----ETTKPSKQ 96

Query: 989  AIPTYAVTSVLRVDAEDWKQGDTFSCMVGHE 1081
            +   YA +S L +  + WK   +FSC+V HE
Sbjct: 97   SNNKYAASSYLSLTPDKWKSHSSFSCLVTHE 127


>ref|XP_849383.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
            precursor (Immunoglobulin-related 14.1 protein)
            (Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
            antigen) [Canis familiaris].
          Length = 187

 Score = 59.3 bits (142), Expect = 8e-09
 Identities = 43/157 (27%), Positives = 63/157 (40%)
 Frame = +2

Query: 611  QPSGGKDAVQASPTRDSCGCYSVSSILPGCADPWNKGETFSCTAAHSELKSALTATITKP 790
            +P+  K+  +  P  D CG +   + L                             + +P
Sbjct: 52   EPASLKEVARKIPIHDECGVFGGGTHL---------------------------TVLGQP 84

Query: 791  KVNTFRPQVHLLPPPSEELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYLVWES 970
            K +   P V L PP SEEL  N+  TL CL+  F P  V V W   G  + +      E+
Sbjct: 85   KAS---PSVTLFPPSSEELGANK-ATLVCLISDFYPSGVTVAWKADGSPVTQGV----ET 136

Query: 971  LPEPGQAIPTYAVTSVLRVDAEDWKQGDTFSCMVGHE 1081
                 Q+   YA +S L +  + WK   +FSC+V HE
Sbjct: 137  TKPSKQSNNKYAASSYLSLTPDKWKSHSSFSCLVTHE 173


>ref|XP_849367.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
            precursor (Immunoglobulin-related 14.1 protein)
            (Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
            antigen) [Canis familiaris].
          Length = 166

 Score = 59.3 bits (142), Expect = 8e-09
 Identities = 34/91 (37%), Positives = 45/91 (49%)
 Frame = +2

Query: 809  PQVHLLPPPSEELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYLVWESLPEPGQ 988
            P V L PP SEEL  N+  TL CL+  F P  V V W   G  + +      E+     Q
Sbjct: 67   PSVTLFPPSSEELGANK-ATLVCLISDFYPSGVTVAWKADGSPITQGV----ETTKPSKQ 121

Query: 989  AIPTYAVTSVLRVDAEDWKQGDTFSCMVGHE 1081
            +   YA +S L +  + WK   +FSC+V HE
Sbjct: 122  SNNKYAASSYLSLTPDKWKSHSSFSCLVTHE 152


>ref|XP_850308.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
            precursor (Immunoglobulin-related 14.1 protein)
            (Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
            antigen) [Canis familiaris].
          Length = 126

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 34/91 (37%), Positives = 45/91 (49%)
 Frame = +2

Query: 809  PQVHLLPPPSEELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYLVWESLPEPGQ 988
            P V L PP SEEL  N+  TL CL+  F P  V V W   G  + +      E+     Q
Sbjct: 27   PSVTLFPPSSEELGANK-ATLVCLISDFYPSGVTVAWKADGSPVTQGV----ETTKPSKQ 81

Query: 989  AIPTYAVTSVLRVDAEDWKQGDTFSCMVGHE 1081
            +   YA +S L +  + WK   +FSC+V HE
Sbjct: 82   SNNKYAASSYLSLTPDKWKSHSSFSCLVTHE 112


>ref|XP_850294.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
            precursor (Immunoglobulin-related 14.1 protein)
            (Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
            antigen) [Canis familiaris].
          Length = 126

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 34/91 (37%), Positives = 45/91 (49%)
 Frame = +2

Query: 809  PQVHLLPPPSEELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYLVWESLPEPGQ 988
            P V L PP SEEL  N+  TL CL+  F P  V V W   G  + +      E+     Q
Sbjct: 27   PSVTLFPPSSEELGANK-ATLVCLISDFYPSGVTVAWKADGSPVTQGV----ETTKPSKQ 81

Query: 989  AIPTYAVTSVLRVDAEDWKQGDTFSCMVGHE 1081
            +   YA +S L +  + WK   +FSC+V HE
Sbjct: 82   SNNKYAASSYLSLTPDKWKSHSSFSCLVTHE 112


>ref|XP_849413.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
            precursor (Immunoglobulin-related 14.1 protein)
            (Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
            antigen) [Canis familiaris].
          Length = 126

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 34/91 (37%), Positives = 45/91 (49%)
 Frame = +2

Query: 809  PQVHLLPPPSEELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYLVWESLPEPGQ 988
            P V L PP SEEL  N+  TL CL+  F P  V V W   G  + +      E+     Q
Sbjct: 27   PSVTLFPPSSEELGANK-ATLVCLISDFYPSGVTVAWKADGSPVTQGV----ETTKPSKQ 81

Query: 989  AIPTYAVTSVLRVDAEDWKQGDTFSCMVGHE 1081
            +   YA +S L +  + WK   +FSC+V HE
Sbjct: 82   SNNKYAASSYLSLTPDKWKSHSSFSCLVTHE 112


>ref|XP_543599.2| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
            precursor (Immunoglobulin-related 14.1 protein)
            (Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
            antigen) [Canis familiaris].
          Length = 126

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 34/91 (37%), Positives = 45/91 (49%)
 Frame = +2

Query: 809  PQVHLLPPPSEELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYLVWESLPEPGQ 988
            P V L PP SEEL  N+  TL CL+  F P  V V W   G  + +      E+     Q
Sbjct: 27   PSVTLFPPSSEELGANK-ATLVCLISDFYPSGVTVAWKADGSPVTQGV----ETTKPSKQ 81

Query: 989  AIPTYAVTSVLRVDAEDWKQGDTFSCMVGHE 1081
            +   YA +S L +  + WK   +FSC+V HE
Sbjct: 82   SNNKYAASSYLSLTPDKWKSHSSFSCLVTHE 112


>ref|XP_849350.1| PREDICTED: similar to Ig lambda chain C regions [Canis familiaris].
          Length = 126

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 34/91 (37%), Positives = 45/91 (49%)
 Frame = +2

Query: 809  PQVHLLPPPSEELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYLVWESLPEPGQ 988
            P V L PP SEEL  N+  TL CL+  F P  V V W   G  + +      E+     Q
Sbjct: 19   PSVTLFPPSSEELGANK-ATLVCLISDFYPSGVTVAWKADGSPVTQGV----ETTKPSKQ 73

Query: 989  AIPTYAVTSVLRVDAEDWKQGDTFSCMVGHE 1081
            +   YA +S L +  + WK   +FSC+V HE
Sbjct: 74   SNNKYAASSYLSLTPDKWKSHSSFSCLVTHE 104


>ref|XP_855821.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
            precursor (Immunoglobulin-related 14.1 protein)
            (Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
            antigen) isoform 3 [Canis familiaris].
          Length = 231

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 34/91 (37%), Positives = 45/91 (49%)
 Frame = +2

Query: 809  PQVHLLPPPSEELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYLVWESLPEPGQ 988
            P V L PP SEEL  N+  TL CL+  F P  V V W   G  + +      E+     Q
Sbjct: 132  PSVTLFPPSSEELGANK-ATLVCLISDFYPSGVTVAWKADGSPVTQGV----ETTKPSKQ 186

Query: 989  AIPTYAVTSVLRVDAEDWKQGDTFSCMVGHE 1081
            +   YA +S L +  + WK   +FSC+V HE
Sbjct: 187  SNNKYAASSYLSLTPDKWKSHSSFSCLVTHE 217


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 52,930,862
Number of extensions: 1555582
Number of successful extensions: 7836
Number of sequences better than 1.0e-05: 108
Number of HSP's gapped: 7602
Number of HSP's successfully gapped: 225
Length of query: 419
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 314
Effective length of database: 15,374,224
Effective search space: 4827506336
Effective search space used: 4827506336
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001625
         (1258 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001171597.1| immunoglobulin lambda-like polypeptide 5 [Ho...    57   4e-08
Alignment   gi|NP_064455.1| immunoglobulin lambda-like polypeptide 1 isofor...    53   5e-07
Alignment   gi|XP_003403714.1| PREDICTED: hypothetical protein LOC100653084...    50   6e-06

>ref|NP_001171597.1| immunoglobulin lambda-like polypeptide 5 [Homo sapiens].
          Length = 214

 Score = 57.0 bits (136), Expect = 4e-08
 Identities = 37/99 (37%), Positives = 47/99 (47%)
 Frame = +2

Query: 785  KPKVNTFRPQVHLLPPPSEELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYLVW 964
            +PK N   P V L PP SEEL  N+  TL CL+  F P  V V W   G  +        
Sbjct: 110  QPKAN---PTVTLFPPSSEELQANK-ATLVCLISDFYPGAVTVAWKADGSPVKAGV---- 161

Query: 965  ESLPEPGQAIPTYAVTSVLRVDAEDWKQGDTFSCMVGHE 1081
            E+     Q+   YA +S L +  E WK   ++SC V HE
Sbjct: 162  ETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHE 200


>ref|NP_064455.1| immunoglobulin lambda-like polypeptide 1 isoform a precursor [Homo
            sapiens].
          Length = 213

 Score = 53.1 bits (126), Expect = 5e-07
 Identities = 34/101 (33%), Positives = 49/101 (48%)
 Frame = +2

Query: 779  ITKPKVNTFRPQVHLLPPPSEELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYL 958
            +++PK     P V L PP SEEL  N+  TL CL+  F P  + V W   G  + +   +
Sbjct: 107  LSQPKAT---PSVTLFPPSSEELQANK-ATLVCLMNDFYPGILTVTWKADGTPITQGVEM 162

Query: 959  VWESLPEPGQAIPTYAVTSVLRVDAEDWKQGDTFSCMVGHE 1081
               S     Q+   YA +S L +  E W+   ++SC V HE
Sbjct: 163  TTPSK----QSNNKYAASSYLSLTPEQWRSRRSYSCQVMHE 199


>ref|XP_003403714.1| PREDICTED: hypothetical protein LOC100653084 [Homo sapiens].
          Length = 279

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 22/29 (75%), Positives = 26/29 (89%)
 Frame = +1

Query: 1   SISRDDSQNTAYLQMNSLRTEDTARYYCA 87
           +ISRD+S+N+ YLQMNSLR EDTA YYCA
Sbjct: 88  TISRDNSKNSLYLQMNSLRAEDTALYYCA 116


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 51,881,981
Number of extensions: 1527899
Number of successful extensions: 7311
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7218
Number of HSP's successfully gapped: 3
Length of query: 419
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 314
Effective length of database: 14,835,944
Effective search space: 4658486416
Effective search space used: 4658486416
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001625
         (1258 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_001472141.2| PREDICTED: hypothetical protein LOC16061 [Mu...   385   e-108
Alignment   gi|XP_003085513.1| PREDICTED: ig alpha chain C region [Mus musc...   383   e-108
Alignment   gi|XP_001474075.2| PREDICTED: ig alpha chain C region isoform 1...   383   e-108

>ref|XP_001472141.2| PREDICTED: hypothetical protein LOC16061 [Mus musculus].
          Length = 349

 Score =  385 bits (988), Expect(2) = e-108
 Identities = 195/324 (60%), Positives = 230/324 (70%), Gaps = 7/324 (2%)
 Frame = +2

Query: 185  SPKIFPLTLGSSEPAGYVVIACLVRDFFPSEPLTVTWSPSREGVIVRNFPPAQA-GGLYT 361
            +P I+PLTL  +  +  V+I CL+ D+FPS  + VTW  S + +   NFPPA A GG YT
Sbjct: 10   NPTIYPLTLPRALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGGYT 69

Query: 362  MSSQLTLPVEQCPADQILKCQVQHLSKSSQSVNVXXXXXXXXXXXX------SLSLQPPA 523
            MSSQLTLP  +CP  + +KC VQH S + Q +NV                  SLSLQ PA
Sbjct: 70   MSSQLTLPAVECPEGESVKCSVQHDSNAVQELNVKCSGPPPPTTPPPPSCQPSLSLQRPA 129

Query: 524  LADLLLGSNASLTCTLSGLKKSEGVSFTWQPSGGKDAVQASPTRDSCGCYSVSSILPGCA 703
            L DLLLGS+AS+TCTL+GL+  EG  FTW+PS GKDAVQ    ++SCGCYSVSS+LPGCA
Sbjct: 130  LEDLLLGSDASITCTLNGLRNPEGAVFTWEPSTGKDAVQKKAVQNSCGCYSVSSVLPGCA 189

Query: 704  DPWNKGETFSCTAAHSELKSALTATITKPKVNTFRPQVHLLPPPSEELALNELVTLTCLV 883
            + WN G +F CT  H E    LT TI K  VNTF PQVHLLPPPSEELALNELV+LTCLV
Sbjct: 190  ERWNSGASFKCTVTHPE-SDTLTGTIAKITVNTFPPQVHLLPPPSEELALNELVSLTCLV 248

Query: 884  RGFSPKDVLVRWLQGGQELPRDKYLVWESLPEPGQAIPTYAVTSVLRVDAEDWKQGDTFS 1063
            R F+PK+VLVRWL G +EL  + YLV+E L EPG+   TY VTSVLRV AE WKQGD +S
Sbjct: 249  RAFNPKEVLVRWLHGNEELSPESYLVFEPLKEPGEGATTYLVTSVLRVSAEIWKQGDQYS 308

Query: 1064 CMVGHEALPLAFTQKNIDRLAGKP 1135
            CMVGHEALP+ FTQK IDRL+GKP
Sbjct: 309  CMVGHEALPMNFTQKTIDRLSGKP 332



 Score = 27.7 bits (60), Expect(2) = e-108
 Identities = 10/16 (62%), Positives = 15/16 (93%)
 Frame = +1

Query: 1138 HVNVSVVMAEAEGICY 1185
            +V+VSV+M+E +GICY
Sbjct: 334  NVSVSVIMSEGDGICY 349


>ref|XP_003085513.1| PREDICTED: ig alpha chain C region [Mus musculus].
          Length = 413

 Score =  383 bits (983), Expect(2) = e-108
 Identities = 193/324 (59%), Positives = 229/324 (70%), Gaps = 7/324 (2%)
 Frame = +2

Query: 185  SPKIFPLTLGSSEPAGYVVIACLVRDFFPSEPLTVTWSPSREGVIVRNFPPAQA-GGLYT 361
            +P I+PLTL  +  +  V+I CL+ D+FPS  + VTW  S + +   NFPPA A GG YT
Sbjct: 74   NPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYT 133

Query: 362  MSSQLTLPVEQCPADQILKCQVQHLSKSSQSVNVXXXXXXXXXXXX------SLSLQPPA 523
            MSSQLTLP  +CP  + +KC VQH S   Q ++V                  SLSLQ PA
Sbjct: 134  MSSQLTLPAVECPEGESVKCSVQHDSNPVQELDVNCSGPTPPPPITIPSCQPSLSLQRPA 193

Query: 524  LADLLLGSNASLTCTLSGLKKSEGVSFTWQPSGGKDAVQASPTRDSCGCYSVSSILPGCA 703
            L DLLLGS+AS+TCTL+GL+  EG  FTW+PS GKDAVQ    ++SCGCYSVSS+LPGCA
Sbjct: 194  LEDLLLGSDASITCTLNGLRNPEGAVFTWEPSTGKDAVQKKAVQNSCGCYSVSSVLPGCA 253

Query: 704  DPWNKGETFSCTAAHSELKSALTATITKPKVNTFRPQVHLLPPPSEELALNELVTLTCLV 883
            + WN G +F CT  H E    LT TI K  VNTF PQVHLLPPPSEELALNEL++LTCLV
Sbjct: 254  ERWNSGASFKCTVTHPE-SGTLTGTIAKVTVNTFPPQVHLLPPPSEELALNELLSLTCLV 312

Query: 884  RGFSPKDVLVRWLQGGQELPRDKYLVWESLPEPGQAIPTYAVTSVLRVDAEDWKQGDTFS 1063
            R F+PK+VLVRWL G +EL  + YLV+E L EPG+   TY VTSVLRV AE WKQGD +S
Sbjct: 313  RAFNPKEVLVRWLHGNEELSPESYLVFEPLKEPGEGATTYLVTSVLRVSAETWKQGDQYS 372

Query: 1064 CMVGHEALPLAFTQKNIDRLAGKP 1135
            CMVGHEALP+ FTQK IDRL+GKP
Sbjct: 373  CMVGHEALPMNFTQKTIDRLSGKP 396



 Score = 27.7 bits (60), Expect(2) = e-108
 Identities = 10/16 (62%), Positives = 15/16 (93%)
 Frame = +1

Query: 1138 HVNVSVVMAEAEGICY 1185
            +V+VSV+M+E +GICY
Sbjct: 398  NVSVSVIMSEGDGICY 413


>ref|XP_001474075.2| PREDICTED: ig alpha chain C region isoform 1 [Mus musculus].
          Length = 354

 Score =  383 bits (983), Expect(2) = e-108
 Identities = 193/324 (59%), Positives = 229/324 (70%), Gaps = 7/324 (2%)
 Frame = +2

Query: 185  SPKIFPLTLGSSEPAGYVVIACLVRDFFPSEPLTVTWSPSREGVIVRNFPPAQA-GGLYT 361
            +P I+PLTL  +  +  V+I CL+ D+FPS  + VTW  S + +   NFPPA A GG YT
Sbjct: 15   NPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYT 74

Query: 362  MSSQLTLPVEQCPADQILKCQVQHLSKSSQSVNVXXXXXXXXXXXX------SLSLQPPA 523
            MSSQLTLP  +CP  + +KC VQH S   Q ++V                  SLSLQ PA
Sbjct: 75   MSSQLTLPAVECPEGESVKCSVQHDSNPVQELDVNCSGPTPPPPITIPSCQPSLSLQRPA 134

Query: 524  LADLLLGSNASLTCTLSGLKKSEGVSFTWQPSGGKDAVQASPTRDSCGCYSVSSILPGCA 703
            L DLLLGS+AS+TCTL+GL+  EG  FTW+PS GKDAVQ    ++SCGCYSVSS+LPGCA
Sbjct: 135  LEDLLLGSDASITCTLNGLRNPEGAVFTWEPSTGKDAVQKKAVQNSCGCYSVSSVLPGCA 194

Query: 704  DPWNKGETFSCTAAHSELKSALTATITKPKVNTFRPQVHLLPPPSEELALNELVTLTCLV 883
            + WN G +F CT  H E    LT TI K  VNTF PQVHLLPPPSEELALNEL++LTCLV
Sbjct: 195  ERWNSGASFKCTVTHPE-SGTLTGTIAKVTVNTFPPQVHLLPPPSEELALNELLSLTCLV 253

Query: 884  RGFSPKDVLVRWLQGGQELPRDKYLVWESLPEPGQAIPTYAVTSVLRVDAEDWKQGDTFS 1063
            R F+PK+VLVRWL G +EL  + YLV+E L EPG+   TY VTSVLRV AE WKQGD +S
Sbjct: 254  RAFNPKEVLVRWLHGNEELSPESYLVFEPLKEPGEGATTYLVTSVLRVSAETWKQGDQYS 313

Query: 1064 CMVGHEALPLAFTQKNIDRLAGKP 1135
            CMVGHEALP+ FTQK IDRL+GKP
Sbjct: 314  CMVGHEALPMNFTQKTIDRLSGKP 337



 Score = 27.7 bits (60), Expect(2) = e-108
 Identities = 10/16 (62%), Positives = 15/16 (93%)
 Frame = +1

Query: 1138 HVNVSVVMAEAEGICY 1185
            +V+VSV+M+E +GICY
Sbjct: 339  NVSVSVIMSEGDGICY 354


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 43,694,379
Number of extensions: 1268249
Number of successful extensions: 5976
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5877
Number of HSP's successfully gapped: 6
Length of query: 419
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 315
Effective length of database: 12,493,815
Effective search space: 3935551725
Effective search space used: 3935551725
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001625
         (1258 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_998993.1| IgG heavy chain [Sus scrofa].                        166   8e-52
Alignment   gi|NP_001230248.1| immunoglobulin lambda-like polypeptide 5 [Su...    63   3e-10
Alignment   gi|XP_003359207.1| PREDICTED: immunoglobulin lambda-like polype...    63   4e-10
Alignment   gi|XP_003133034.1| PREDICTED: immunoglobulin lambda-like polype...    59   7e-09

>ref|NP_998993.1| IgG heavy chain [Sus scrofa].
          Length = 474

 Score =  166 bits (420), Expect(2) = 8e-52
 Identities = 116/350 (33%), Positives = 166/350 (47%), Gaps = 16/350 (4%)
 Frame = +2

Query: 131  MDLWGPGXXXXXXXXXXTSPKIFPLTLGSSEPAG-YVVIACLVRDFFPSEPLTVTWSPSR 307
            MDLWGPG          T+P ++PL     + +G  V + CL   +FP EP+T+TW+   
Sbjct: 133  MDLWGPGVEVVVSSAPKTAPSVYPLAPCGRDTSGPNVALGCLASSYFP-EPVTMTWNSGA 191

Query: 308  EGVIVRNFPPA-QAGGLYTMSSQLTLPVEQCPADQILKCQVQH---LSKSSQSVNVXXXX 475
                V  FP   Q  GLY++SS +T+P     + +   C V H    +K  + V      
Sbjct: 192  LTSGVHTFPSVLQPSGLYSLSSMVTVPASSL-SSKSYTCNVNHPATTTKVDKRVGTKTKP 250

Query: 476  XXXXXXXX-----SLSLQPPALAD-LLLGSNASLTCTLSGLKKSEG-VSFTWQPSGGKDA 634
                         S+ + PP   D L++     +TC +  + K    V F+W   G +  
Sbjct: 251  PCPICPGCEVAGPSVFIFPPKPKDTLMISQTPEVTCVVVDVSKEHAEVQFSWYVDGVE-- 308

Query: 635  VQASPTRDS----CGCYSVSSILPGCADPWNKGETFSCTAAHSELKSALTATITKPKVNT 802
            V  + TR         Y V S+LP     W KG+ F C   + +L + +T TI+K    +
Sbjct: 309  VHTAETRPKEEQFNSTYRVVSVLPIQHQDWLKGKEFKCKVNNVDLPAPITRTISKAIGQS 368

Query: 803  FRPQVHLLPPPSEELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYLVWESLPEP 982
              PQV+ LPPP+EEL+ ++ VT+TCLV GF P D+ V W   GQ  P   Y    + P  
Sbjct: 369  REPQVYTLPPPAEELSRSK-VTVTCLVIGFYPPDIHVEWKSNGQPEPEGNY---RTTPPQ 424

Query: 983  GQAIPTYAVTSVLRVDAEDWKQGDTFSCMVGHEALPLAFTQKNIDRLAGK 1132
                 T+ + S L VD   W  G+TF C V HEAL   +TQK+I +  GK
Sbjct: 425  QDVDGTFFLYSKLAVDKARWDHGETFECAVMHEALHNHYTQKSISKTQGK 474



 Score = 56.6 bits (135), Expect(2) = 8e-52
 Identities = 26/29 (89%), Positives = 28/29 (96%)
 Frame = +1

Query: 1   SISRDDSQNTAYLQMNSLRTEDTARYYCA 87
           +ISRD+SQNTAYLQMNSLRTEDTA YYCA
Sbjct: 87  TISRDNSQNTAYLQMNSLRTEDTALYYCA 115


>ref|NP_001230248.1| immunoglobulin lambda-like polypeptide 5 [Sus scrofa].
          Length = 234

 Score = 63.2 bits (152), Expect = 3e-10
 Identities = 64/213 (30%), Positives = 92/213 (43%), Gaps = 22/213 (10%)
 Frame = +2

Query: 509  LQPPALADLLLGSNASLTCTLS-GLKKSEGVSFTWQPSGG---KDAVQASPTRDSCGCYS 676
            +Q PA++ + LG   +LTC  S G   S      +Q + G   +  + ++ +R +     
Sbjct: 23   IQEPAMS-VSLGGTVTLTCAFSSGSVTSSDYPGWFQQTPGQPPRTVIYSTNSRPTGVPSR 81

Query: 677  VSSILPGCADPWNKGETFSCTAAHSE---------LKSALTAT---------ITKPKVNT 802
             S  + G     NK  T + T A +E          KS  T T         + +PK   
Sbjct: 82   FSGAISG-----NKA-TLTITGAQAEDEADYFCALRKSGGTVTFGGGTHVTVLGQPKA-- 133

Query: 803  FRPQVHLLPPPSEELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYLVWESLPEP 982
              P V+L PP SEEL  N+  TL CL+  F P  V V W  GG  + +      E+    
Sbjct: 134  -APTVNLFPPSSEELGTNK-ATLVCLISDFYPGAVTVTWKAGGTTVTQGV----ETTKPS 187

Query: 983  GQAIPTYAVTSVLRVDAEDWKQGDTFSCMVGHE 1081
             Q+   YA +S L + A DWK    F+C V HE
Sbjct: 188  KQSNNKYAASSYLALSASDWKSSSGFTCQVTHE 220


>ref|XP_003359207.1| PREDICTED: immunoglobulin lambda-like polypeptide 5-like [Sus
            scrofa].
          Length = 233

 Score = 62.8 bits (151), Expect = 4e-10
 Identities = 36/91 (39%), Positives = 46/91 (50%)
 Frame = +2

Query: 809  PQVHLLPPPSEELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYLVWESLPEPGQ 988
            P V+L PP SEEL  N+  TL CL+  F P  V V W  GG  + +      E+     Q
Sbjct: 134  PTVNLFPPSSEELGTNK-ATLVCLISDFYPGAVTVTWKAGGTTVTQGV----ETTKPSKQ 188

Query: 989  AIPTYAVTSVLRVDAEDWKQGDTFSCMVGHE 1081
            +   YA +S L + A DWK    F+C V HE
Sbjct: 189  SNNKYAASSYLALSASDWKSSSGFTCQVTHE 219


>ref|XP_003133034.1| PREDICTED: immunoglobulin lambda-like polypeptide 5-like [Sus
            scrofa].
          Length = 211

 Score = 58.5 bits (140), Expect = 7e-09
 Identities = 36/91 (39%), Positives = 46/91 (50%)
 Frame = +2

Query: 809  PQVHLLPPPSEELALNELVTLTCLVRGFSPKDVLVRWLQGGQELPRDKYLVWESLPEPGQ 988
            P V L PP  EEL+ N+  TL CL+  F P  V V W  GG  + +    V  S P   Q
Sbjct: 112  PTVTLFPPSPEELSTNK-ATLVCLISDFYPGAVTVTWKAGGTTITQG---VDTSQPSK-Q 166

Query: 989  AIPTYAVTSVLRVDAEDWKQGDTFSCMVGHE 1081
            +   YA +S L + A DWK    F+C V H+
Sbjct: 167  SNNKYAASSYLALSASDWKSSSGFTCQVTHQ 197


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,145,578
Number of extensions: 1020041
Number of successful extensions: 4730
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4659
Number of HSP's successfully gapped: 5
Length of query: 419
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 317
Effective length of database: 8,804,438
Effective search space: 2791006846
Effective search space used: 2791006846
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001625
         (1258 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL896422.1| Sus scrofa unplaced genomic scaffold chrU_scaffol...   595   e-167
gb|GL896114.1| Sus scrofa unplaced genomic scaffold chrU_scaffol...   137   2e-29

>gb|GL896422.1| Sus scrofa unplaced genomic scaffold chrU_scaffold764
          Length = 7672

 Score =  595 bits (300), Expect = e-167
 Identities = 303/304 (99%)
 Strand = Plus / Plus

                                                                        
Query: 170  tcagtgtctgaaaccagccccaaaatcttcccactgactctggggagcagcgagcctgcc 229
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1885 tcagtgtctgaaaccagccccaaaatcttcccactgactctggggagcagcgagcctgcc 1944

                                                                        
Query: 230  ggatatgtggtcatcgcctgcctggtccgggacttcttcccgtcagagcccctgacagta 289
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1945 ggatatgtggtcatcgcctgcctggtccgggacttcttcccgtcagagcccctgacagta 2004

                                                                        
Query: 290  acctggagccctagtcgcgagggcgttattgtcagaaacttcccccctgcgcaggccggg 349
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2005 acctggagccctagtcgcgagggcgttattgtcagaaacttcccccctgcgcaggccggg 2064

                                                                        
Query: 350  ggcctgtacaccatgagcagccagctgaccttgccagtcgagcagtgcccagccgatcag 409
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2065 ggcctgtacaccatgagcagccaggtgaccttgccagtcgagcagtgcccagccgatcag 2124

                                                                        
Query: 410  atcctgaagtgccaagtgcagcacctctccaaatccagccagtccgtgaacgtgccctgc 469
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2125 atcctgaagtgccaagtgcagcacctctccaaatccagccagtccgtgaacgtgccctgc 2184

                
Query: 470  aaag 473
            ||||
Sbjct: 2185 aaag 2188



 Score =  563 bits (284), Expect = e-158
 Identities = 287/288 (99%)
 Strand = Plus / Plus

                                                                        
Query: 472  agatccatgtccccagtgctgcaagcccagcctgtccctgcagccaccagcccttgcaga 531
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2346 agatccatgtccccagtgctgcaagcccagcctgtccctgcagccaccagcccttgcaga 2405

                                                                        
Query: 532  cctgctcctgggctccaatgccagcctcacgtgcacactcagtggcctgaaaaaatccga 591
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 2406 cctgctcctgggctccaatgccagcctcacctgcacactcagtggcctgaaaaaatccga 2465

                                                                        
Query: 592  gggtgtcagcttcacctggcagccctcaggtgggaaggatgccgtccaggcgtcccccac 651
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2466 gggtgtcagcttcacctggcagccctcaggtgggaaggatgccgtccaggcgtcccccac 2525

                                                                        
Query: 652  gcgtgattcctgtggctgctacagcgtgtccagcatcctgccaggctgtgctgatccttg 711
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2526 gcgtgattcctgtggctgctacagcgtgtccagcatcctgccaggctgtgctgatccttg 2585

                                                            
Query: 712  gaacaaaggagagacattctcctgcaccgccgcccactctgagttgaa 759
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2586 gaacaaaggagagacattctcctgcaccgccgcccactctgagttgaa 2633



 Score =  365 bits (184), Expect = 4e-98
 Identities = 184/184 (100%)
 Strand = Plus / Plus

                                                                        
Query: 793  agtgaacacgttccggccccaggtccacctgctgccgccgccgtcggaggagctggccct 852
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2869 agtgaacacgttccggccccaggtccacctgctgccgccgccgtcggaggagctggccct 2928

                                                                        
Query: 853  caatgagctggtgacactgacatgcctggtgcggggcttcagccccaaggatgtgctggt 912
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2929 caatgagctggtgacactgacatgcctggtgcggggcttcagccccaaggatgtgctggt 2988

                                                                        
Query: 913  gcgatggctgcaagggggccaggaactgccccgtgacaagtacctcgtctgggaatccct 972
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2989 gcgatggctgcaagggggccaggaactgccccgtgacaagtacctcgtctgggaatccct 3048

                
Query: 973  gcca 976
            ||||
Sbjct: 3049 gcca 3052



 Score =  232 bits (117), Expect = 4e-58
 Identities = 117/117 (100%)
 Strand = Plus / Plus

                                                                        
Query: 993  tccccacctacgccgtgaccagcgtgctgcgcgtggacgccgaggactggaagcagggag 1052
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3153 tccccacctacgccgtgaccagcgtgctgcgcgtggacgccgaggactggaagcagggag 3212

                                                                     
Query: 1053 acaccttctcctgcatggtgggccacgaggccctgcccctggccttcacccagaaga 1109
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3213 acaccttctcctgcatggtgggccacgaggccctgcccctggccttcacccagaaga 3269



 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 42/42 (100%)
 Strand = Plus / Plus

                                                      
Query: 1191 cgccccgcccactcgcccctcgaataaactccgtgctcgctt 1232
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3379 cgccccgcccactcgcccctcgaataaactccgtgctcgctt 3420


>gb|GL896114.1| Sus scrofa unplaced genomic scaffold chrU_scaffold487
          Length = 3028

 Score =  137 bits (69), Expect = 2e-29
 Identities = 81/85 (95%)
 Strand = Plus / Minus

                                                                        
Query: 3    catctccagagacgactcccagaacacggcctatctgcaaatgaacagcctgagaacaga 62
            ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2550 catctccagcgacaactcccagaacacggcctatctgcaaatgaacagcctgagaaccga 2491

                                     
Query: 63   agacacggcccgctattattgtgca 87
            |||||||||||||||||| ||||||
Sbjct: 2490 agacacggcccgctattactgtgca 2466


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,237,297
Number of extensions: 200
Number of successful extensions: 200
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 6
Length of query: 1258
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1237
Effective length of database: 2,808,413,156
Effective search space: 3474007073972
Effective search space used: 3474007073972
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)