Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001628
(1183 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001179120.1| serine/threonine-protein phosphatase PGAM5, ... 472 e-133
Alignment gi|XP_002694495.1| PREDICTED: phosphoglycerate mutase family me... 472 e-133
>ref|NP_001179120.1| serine/threonine-protein phosphatase PGAM5, mitochondrial [Bos
taurus].
Length = 289
Score = 472 bits (1214), Expect = e-133
Identities = 239/289 (82%), Positives = 243/289 (84%)
Frame = +2
Query: 254 MAFRQXXXXXXXXXXXXXXXVLFSAVAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXWDP 433
MAFRQ VLFSAVAVG WDP
Sbjct: 1 MAFRQALQLAACGLAGGSAAVLFSAVAVGKPRAGGDAEPRVVEPPAWAGTSRPGPGVWDP 60
Query: 434 NWDRREPLSLVNLRKRNLEPGEEELASRLDHYKAKATRHIFLIRHSQYHVDASLEKDRTL 613
NWDRREPLSLVNLRKRNLE GEEEL SRLDH KAKATRHIFLIRHSQYHVDASLEKDRTL
Sbjct: 61 NWDRREPLSLVNLRKRNLETGEEELTSRLDHCKAKATRHIFLIRHSQYHVDASLEKDRTL 120
Query: 614 TPLGREQAELTGLRLASLGLKFNKIVHSSMTRAIETTDIISKHLPGVCRVSTDLLREGAP 793
TPLGREQAELTGLRLASLGLKFNKIVHSSMTRA+ETTDIISKHLPGVC+VSTDLLREGAP
Sbjct: 121 TPLGREQAELTGLRLASLGLKFNKIVHSSMTRAVETTDIISKHLPGVCKVSTDLLREGAP 180
Query: 794 IEPDPPVSHWKPEAVQYYEDGARIEAAFRNYIHRADAKQQEDSYEIFICHANVIRYIVCR 973
IEPDPPVSHWKPEAVQYYEDGARIEAAFRNYIHRADAKQQEDSYEIFICHANVIRYIVCR
Sbjct: 181 IEPDPPVSHWKPEAVQYYEDGARIEAAFRNYIHRADAKQQEDSYEIFICHANVIRYIVCR 240
Query: 974 ALQFPPEGWLRLSLNNGSITHLVVRPDGRVALRALGDTGFMPPEQISRS 1120
ALQFPPEGWLRLSLNNGSITHLVVRPDGRVALRALGDTGFMPP++ISRS
Sbjct: 241 ALQFPPEGWLRLSLNNGSITHLVVRPDGRVALRALGDTGFMPPDKISRS 289
>ref|XP_002694495.1| PREDICTED: phosphoglycerate mutase family member 5 [Bos taurus].
Length = 289
Score = 472 bits (1214), Expect = e-133
Identities = 239/289 (82%), Positives = 243/289 (84%)
Frame = +2
Query: 254 MAFRQXXXXXXXXXXXXXXXVLFSAVAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXWDP 433
MAFRQ VLFSAVAVG WDP
Sbjct: 1 MAFRQALQLAACGLAGGSAAVLFSAVAVGKPRAGGDAEPRVVEPPAWAGTSRPGPGVWDP 60
Query: 434 NWDRREPLSLVNLRKRNLEPGEEELASRLDHYKAKATRHIFLIRHSQYHVDASLEKDRTL 613
NWDRREPLSLVNLRKRNLE GEEEL SRLDH KAKATRHIFLIRHSQYHVDASLEKDRTL
Sbjct: 61 NWDRREPLSLVNLRKRNLETGEEELTSRLDHCKAKATRHIFLIRHSQYHVDASLEKDRTL 120
Query: 614 TPLGREQAELTGLRLASLGLKFNKIVHSSMTRAIETTDIISKHLPGVCRVSTDLLREGAP 793
TPLGREQAELTGLRLASLGLKFNKIVHSSMTRA+ETTDIISKHLPGVC+VSTDLLREGAP
Sbjct: 121 TPLGREQAELTGLRLASLGLKFNKIVHSSMTRAVETTDIISKHLPGVCKVSTDLLREGAP 180
Query: 794 IEPDPPVSHWKPEAVQYYEDGARIEAAFRNYIHRADAKQQEDSYEIFICHANVIRYIVCR 973
IEPDPPVSHWKPEAVQYYEDGARIEAAFRNYIHRADAKQQEDSYEIFICHANVIRYIVCR
Sbjct: 181 IEPDPPVSHWKPEAVQYYEDGARIEAAFRNYIHRADAKQQEDSYEIFICHANVIRYIVCR 240
Query: 974 ALQFPPEGWLRLSLNNGSITHLVVRPDGRVALRALGDTGFMPPEQISRS 1120
ALQFPPEGWLRLSLNNGSITHLVVRPDGRVALRALGDTGFMPP++ISRS
Sbjct: 241 ALQFPPEGWLRLSLNNGSITHLVVRPDGRVALRALGDTGFMPPDKISRS 289
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 51,891,491
Number of extensions: 1803700
Number of successful extensions: 8518
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8472
Number of HSP's successfully gapped: 2
Length of query: 394
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 290
Effective length of database: 14,240,222
Effective search space: 4129664380
Effective search space used: 4129664380
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001628
(1183 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_543346.2| PREDICTED: similar to Bcl-XL-binding protein v6... 467 e-131
>ref|XP_543346.2| PREDICTED: similar to Bcl-XL-binding protein v68 [Canis familiaris].
Length = 289
Score = 467 bits (1201), Expect = e-131
Identities = 236/289 (81%), Positives = 242/289 (83%)
Frame = +2
Query: 254 MAFRQXXXXXXXXXXXXXXXVLFSAVAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXWDP 433
MAFRQ VLFSAVAVG WDP
Sbjct: 1 MAFRQALQLAACGLAGGSAAVLFSAVAVGKPRAGGDAEPRVVEAPAWAGTARPGPGVWDP 60
Query: 434 NWDRREPLSLVNLRKRNLEPGEEELASRLDHYKAKATRHIFLIRHSQYHVDASLEKDRTL 613
NWDRREPLSLVNLRKRNL+ GEEELASRLDH KAKATRHIFLIRHSQYH+DASLEKDRTL
Sbjct: 61 NWDRREPLSLVNLRKRNLDSGEEELASRLDHCKAKATRHIFLIRHSQYHMDASLEKDRTL 120
Query: 614 TPLGREQAELTGLRLASLGLKFNKIVHSSMTRAIETTDIISKHLPGVCRVSTDLLREGAP 793
TPLGREQAELTGLRLASLGLKFNKIVHSSMTRAIET+DIISKHLPGVC+VSTDLLREGAP
Sbjct: 121 TPLGREQAELTGLRLASLGLKFNKIVHSSMTRAIETSDIISKHLPGVCKVSTDLLREGAP 180
Query: 794 IEPDPPVSHWKPEAVQYYEDGARIEAAFRNYIHRADAKQQEDSYEIFICHANVIRYIVCR 973
IEPDPPVSHWKPEAVQYYEDGARIEAAFRNYIHRAD KQQEDSYEIFICHANVIRYIVCR
Sbjct: 181 IEPDPPVSHWKPEAVQYYEDGARIEAAFRNYIHRADVKQQEDSYEIFICHANVIRYIVCR 240
Query: 974 ALQFPPEGWLRLSLNNGSITHLVVRPDGRVALRALGDTGFMPPEQISRS 1120
ALQFPPEGWLRLSLNNGSITHLVVRPDGRVALR LGDTGFMPP++ISRS
Sbjct: 241 ALQFPPEGWLRLSLNNGSITHLVVRPDGRVALRTLGDTGFMPPDKISRS 289
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 53,825,842
Number of extensions: 1786525
Number of successful extensions: 8888
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8845
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 289
Effective length of database: 15,374,224
Effective search space: 4443150736
Effective search space used: 4443150736
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001628
(1183 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001164014.1| serine/threonine-protein phosphatase PGAM5, ... 463 e-130
Alignment gi|NP_001164015.1| serine/threonine-protein phosphatase PGAM5, ... 457 e-128
Alignment gi|NP_612642.2| serine/threonine-protein phosphatase PGAM5, mit... 370 e-102
>ref|NP_001164014.1| serine/threonine-protein phosphatase PGAM5, mitochondrial isoform 1
[Homo sapiens].
Length = 289
Score = 463 bits (1192), Expect = e-130
Identities = 230/289 (79%), Positives = 243/289 (84%)
Frame = +2
Query: 254 MAFRQXXXXXXXXXXXXXXXVLFSAVAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXWDP 433
MAFRQ VLFSAVAVG WDP
Sbjct: 1 MAFRQALQLAACGLAGGSAAVLFSAVAVGKPRAGGDAEPRPAEPPAWAGGARPGPGVWDP 60
Query: 434 NWDRREPLSLVNLRKRNLEPGEEELASRLDHYKAKATRHIFLIRHSQYHVDASLEKDRTL 613
NWDRREPLSL+N+RKRN+E GEEELAS+LDHYKAKATRHIFLIRHSQYHVD SLEKDRTL
Sbjct: 61 NWDRREPLSLINVRKRNVESGEEELASKLDHYKAKATRHIFLIRHSQYHVDGSLEKDRTL 120
Query: 614 TPLGREQAELTGLRLASLGLKFNKIVHSSMTRAIETTDIISKHLPGVCRVSTDLLREGAP 793
TPLGREQAELTGLRLASLGLKFNKIVHSSMTRAIETTDIIS+HLPGVC+VSTDLLREGAP
Sbjct: 121 TPLGREQAELTGLRLASLGLKFNKIVHSSMTRAIETTDIISRHLPGVCKVSTDLLREGAP 180
Query: 794 IEPDPPVSHWKPEAVQYYEDGARIEAAFRNYIHRADAKQQEDSYEIFICHANVIRYIVCR 973
IEPDPPVSHWKPEAVQYYEDGARIEAAFRNYIHRADA+Q+EDSYEIFICHANVIRYIVCR
Sbjct: 181 IEPDPPVSHWKPEAVQYYEDGARIEAAFRNYIHRADARQEEDSYEIFICHANVIRYIVCR 240
Query: 974 ALQFPPEGWLRLSLNNGSITHLVVRPDGRVALRALGDTGFMPPEQISRS 1120
ALQFPPEGWLRLSLNNGSITHLV+RP+GRVALR LGDTGFMPP++I+RS
Sbjct: 241 ALQFPPEGWLRLSLNNGSITHLVIRPNGRVALRTLGDTGFMPPDKITRS 289
>ref|NP_001164015.1| serine/threonine-protein phosphatase PGAM5, mitochondrial isoform 2
[Homo sapiens].
Length = 288
Score = 457 bits (1175), Expect = e-128
Identities = 229/289 (79%), Positives = 242/289 (83%)
Frame = +2
Query: 254 MAFRQXXXXXXXXXXXXXXXVLFSAVAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXWDP 433
MAFRQ VLFSAVAVG WDP
Sbjct: 1 MAFRQALQLAACGLAGGSAAVLFSAVAVGKPRAGGDAEPRPAEPPAWAGGARPGPGVWDP 60
Query: 434 NWDRREPLSLVNLRKRNLEPGEEELASRLDHYKAKATRHIFLIRHSQYHVDASLEKDRTL 613
NWDRREPLSL+N+RKRN+E GEEELAS+LDHYKAKATRHIFLIRHSQYHVD SLEKDRTL
Sbjct: 61 NWDRREPLSLINVRKRNVESGEEELASKLDHYKAKATRHIFLIRHSQYHVDGSLEKDRTL 120
Query: 614 TPLGREQAELTGLRLASLGLKFNKIVHSSMTRAIETTDIISKHLPGVCRVSTDLLREGAP 793
TPLGREQAELTGLRLASLGLKFNKIVHSSMTRAIETTDIIS+HLPGVC+VSTDLLREGAP
Sbjct: 121 TPLGREQAELTGLRLASLGLKFNKIVHSSMTRAIETTDIISRHLPGVCKVSTDLLREGAP 180
Query: 794 IEPDPPVSHWKPEAVQYYEDGARIEAAFRNYIHRADAKQQEDSYEIFICHANVIRYIVCR 973
IEPDPPVSHWKPEAV YYEDGARIEAAFRNYIHRADA+Q+EDSYEIFICHANVIRYIVCR
Sbjct: 181 IEPDPPVSHWKPEAV-YYEDGARIEAAFRNYIHRADARQEEDSYEIFICHANVIRYIVCR 239
Query: 974 ALQFPPEGWLRLSLNNGSITHLVVRPDGRVALRALGDTGFMPPEQISRS 1120
ALQFPPEGWLRLSLNNGSITHLV+RP+GRVALR LGDTGFMPP++I+RS
Sbjct: 240 ALQFPPEGWLRLSLNNGSITHLVIRPNGRVALRTLGDTGFMPPDKITRS 288
>ref|NP_612642.2| serine/threonine-protein phosphatase PGAM5, mitochondrial isoform 3
[Homo sapiens].
Length = 255
Score = 370 bits (951), Expect = e-102
Identities = 186/239 (77%), Positives = 194/239 (81%)
Frame = +2
Query: 254 MAFRQXXXXXXXXXXXXXXXVLFSAVAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXWDP 433
MAFRQ VLFSAVAVG WDP
Sbjct: 1 MAFRQALQLAACGLAGGSAAVLFSAVAVGKPRAGGDAEPRPAEPPAWAGGARPGPGVWDP 60
Query: 434 NWDRREPLSLVNLRKRNLEPGEEELASRLDHYKAKATRHIFLIRHSQYHVDASLEKDRTL 613
NWDRREPLSL+N+RKRN+E GEEELAS+LDHYKAKATRHIFLIRHSQYHVD SLEKDRTL
Sbjct: 61 NWDRREPLSLINVRKRNVESGEEELASKLDHYKAKATRHIFLIRHSQYHVDGSLEKDRTL 120
Query: 614 TPLGREQAELTGLRLASLGLKFNKIVHSSMTRAIETTDIISKHLPGVCRVSTDLLREGAP 793
TPLGREQAELTGLRLASLGLKFNKIVHSSMTRAIETTDIIS+HLPGVC+VSTDLLREGAP
Sbjct: 121 TPLGREQAELTGLRLASLGLKFNKIVHSSMTRAIETTDIISRHLPGVCKVSTDLLREGAP 180
Query: 794 IEPDPPVSHWKPEAVQYYEDGARIEAAFRNYIHRADAKQQEDSYEIFICHANVIRYIVC 970
IEPDPPVSHWKPEAVQYYEDGARIEAAFRNYIHRADA+Q+EDSYEIFICHANVIRYIVC
Sbjct: 181 IEPDPPVSHWKPEAVQYYEDGARIEAAFRNYIHRADARQEEDSYEIFICHANVIRYIVC 239
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 52,307,088
Number of extensions: 1713234
Number of successful extensions: 8147
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 8112
Number of HSP's successfully gapped: 3
Length of query: 394
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 289
Effective length of database: 14,835,944
Effective search space: 4287587816
Effective search space used: 4287587816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001628
(1183 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001157010.1| serine/threonine-protein phosphatase PGAM5, ... 452 e-127
Alignment gi|NP_082549.2| serine/threonine-protein phosphatase PGAM5, mit... 446 e-125
>ref|NP_001157010.1| serine/threonine-protein phosphatase PGAM5, mitochondrial isoform 1
[Mus musculus].
Length = 288
Score = 452 bits (1164), Expect = e-127
Identities = 228/289 (78%), Positives = 240/289 (83%)
Frame = +2
Query: 254 MAFRQXXXXXXXXXXXXXXXVLFSAVAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXWDP 433
MAFRQ VLFSAVAVG WD
Sbjct: 1 MAFRQALQLAACGLAGGSAAVLFSAVAVGKPRGGGDADTRATEPPAWTGARAGRGV-WDT 59
Query: 434 NWDRREPLSLVNLRKRNLEPGEEELASRLDHYKAKATRHIFLIRHSQYHVDASLEKDRTL 613
NWDRREPLSL+NL+KRN+E GE+EL SRLDHYKAKATRHIFLIRHSQYHVD SLEKDRTL
Sbjct: 60 NWDRREPLSLINLKKRNVESGEDELTSRLDHYKAKATRHIFLIRHSQYHVDGSLEKDRTL 119
Query: 614 TPLGREQAELTGLRLASLGLKFNKIVHSSMTRAIETTDIISKHLPGVCRVSTDLLREGAP 793
TPLGREQAELTGLRLASLGLKFNKIVHSSMTRA+ETTDIISKHLPGV RVSTDLLREGAP
Sbjct: 120 TPLGREQAELTGLRLASLGLKFNKIVHSSMTRAVETTDIISKHLPGVSRVSTDLLREGAP 179
Query: 794 IEPDPPVSHWKPEAVQYYEDGARIEAAFRNYIHRADAKQQEDSYEIFICHANVIRYIVCR 973
IEPDPPVSHWKPEAVQYYEDGARIEAAFRNYIHRADA+Q+EDSYEIFICHANVIRYIVCR
Sbjct: 180 IEPDPPVSHWKPEAVQYYEDGARIEAAFRNYIHRADARQEEDSYEIFICHANVIRYIVCR 239
Query: 974 ALQFPPEGWLRLSLNNGSITHLVVRPDGRVALRALGDTGFMPPEQISRS 1120
ALQFPPEGWLRLSLNNGSITHLV+RP+GRVALR LGDTGFMPP++I+RS
Sbjct: 240 ALQFPPEGWLRLSLNNGSITHLVIRPNGRVALRTLGDTGFMPPDKITRS 288
>ref|NP_082549.2| serine/threonine-protein phosphatase PGAM5, mitochondrial isoform 2
[Mus musculus].
Length = 287
Score = 446 bits (1147), Expect = e-125
Identities = 227/289 (78%), Positives = 239/289 (82%)
Frame = +2
Query: 254 MAFRQXXXXXXXXXXXXXXXVLFSAVAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXWDP 433
MAFRQ VLFSAVAVG WD
Sbjct: 1 MAFRQALQLAACGLAGGSAAVLFSAVAVGKPRGGGDADTRATEPPAWTGARAGRGV-WDT 59
Query: 434 NWDRREPLSLVNLRKRNLEPGEEELASRLDHYKAKATRHIFLIRHSQYHVDASLEKDRTL 613
NWDRREPLSL+NL+KRN+E GE+EL SRLDHYKAKATRHIFLIRHSQYHVD SLEKDRTL
Sbjct: 60 NWDRREPLSLINLKKRNVESGEDELTSRLDHYKAKATRHIFLIRHSQYHVDGSLEKDRTL 119
Query: 614 TPLGREQAELTGLRLASLGLKFNKIVHSSMTRAIETTDIISKHLPGVCRVSTDLLREGAP 793
TPLGREQAELTGLRLASLGLKFNKIVHSSMTRA+ETTDIISKHLPGV RVSTDLLREGAP
Sbjct: 120 TPLGREQAELTGLRLASLGLKFNKIVHSSMTRAVETTDIISKHLPGVSRVSTDLLREGAP 179
Query: 794 IEPDPPVSHWKPEAVQYYEDGARIEAAFRNYIHRADAKQQEDSYEIFICHANVIRYIVCR 973
IEPDPPVSHWKPEAV YYEDGARIEAAFRNYIHRADA+Q+EDSYEIFICHANVIRYIVCR
Sbjct: 180 IEPDPPVSHWKPEAV-YYEDGARIEAAFRNYIHRADARQEEDSYEIFICHANVIRYIVCR 238
Query: 974 ALQFPPEGWLRLSLNNGSITHLVVRPDGRVALRALGDTGFMPPEQISRS 1120
ALQFPPEGWLRLSLNNGSITHLV+RP+GRVALR LGDTGFMPP++I+RS
Sbjct: 239 ALQFPPEGWLRLSLNNGSITHLVIRPNGRVALRTLGDTGFMPPDKITRS 287
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 43,699,165
Number of extensions: 1397135
Number of successful extensions: 6285
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6253
Number of HSP's successfully gapped: 4
Length of query: 394
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 291
Effective length of database: 12,523,851
Effective search space: 3644440641
Effective search space used: 3644440641
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001628
(1183 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,329,025
Number of extensions: 1286966
Number of successful extensions: 5800
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 5779
Number of HSP's successfully gapped: 0
Length of query: 394
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 293
Effective length of database: 8,829,335
Effective search space: 2586995155
Effective search space used: 2586995155
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001628
(1183 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896438.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 303 1e-79
Sscrofa_Chr14 115 6e-23
>gb|GL896438.1| Sus scrofa unplaced genomic scaffold chrU_scaffold779
Length = 20633
Score = 303 bits (153), Expect = 1e-79
Identities = 159/161 (98%)
Strand = Plus / Minus
Query: 1023 gcagcatcacccacctggtggtccggccagatggccgcgtggcgctcagggccctcgggg 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14233 gcagcatcacccacctggtggtccggccagatggccgcgtggcgctcagggccctcgggg 14174
Query: 1083 acacagggttcatgcctcctgaacagatctcccgctcctgagggcggcccccaggccctg 1142
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 14173 acacagggttcatgcctcctgacaagatctcccgctcctgagggcggcccccaggccctg 14114
Query: 1143 ctcttctccacagcccctgcctggcctcgggaacacaggct 1183
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 14113 ctcttctccacagcccctgcctggcctcgggaacacaggct 14073
Score = 280 bits (141), Expect = 2e-72
Identities = 141/141 (100%)
Strand = Plus / Minus
Query: 485 cttgaacccggagaagaagagctggcgtccaggctggaccactacaaagccaaggccact 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18001 cttgaacccggagaagaagagctggcgtccaggctggaccactacaaagccaaggccact 17942
Query: 545 cggcacatcttcctcatcaggcactcccagtaccatgtggacgcctccctggagaaggac 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17941 cggcacatcttcctcatcaggcactcccagtaccatgtggacgcctccctggagaaggac 17882
Query: 605 cgcacgctgacacccctgggt 625
|||||||||||||||||||||
Sbjct: 17881 cgcacgctgacacccctgggt 17861
Score = 270 bits (136), Expect = 2e-69
Identities = 136/136 (100%)
Strand = Plus / Minus
Query: 838 gcagtattacgaagatggcgcgaggatcgaggctgccttccggaactacatccaccgggc 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16769 gcagtattacgaagatggcgcgaggatcgaggctgccttccggaactacatccaccgggc 16710
Query: 898 tgatgccaagcagcaggaggacagttatgagatcttcatctgccacgccaatgtcatccg 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16709 tgatgccaagcagcaggaggacagttatgagatcttcatctgccacgccaatgtcatccg 16650
Query: 958 ttacatcgtgtgccgg 973
||||||||||||||||
Sbjct: 16649 ttacatcgtgtgccgg 16634
Score = 254 bits (128), Expect = 1e-64
Identities = 128/128 (100%)
Strand = Plus / Minus
Query: 623 ggtcgtgagcaggctgagctaactggtctccgtcttgcaagcttggggttgaaatttaat 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17248 ggtcgtgagcaggctgagctaactggtctccgtcttgcaagcttggggttgaaatttaat 17189
Query: 683 aaaatcgtccattcctccatgacccgcgccatagaaaccactgacatcatcagcaaacac 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17188 aaaatcgtccattcctccatgacccgcgccatagaaaccactgacatcatcagcaaacac 17129
Query: 743 ctgccagg 750
||||||||
Sbjct: 17128 ctgccagg 17121
Score = 141 bits (71), Expect = 1e-30
Identities = 71/71 (100%)
Strand = Plus / Minus
Query: 747 caggcgtctgcagggtcagcacagacctgctcagggagggcgcccccatcgagcccgatc 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17038 caggcgtctgcagggtcagcacagacctgctcagggagggcgcccccatcgagcccgatc 16979
Query: 807 ccccagtgtct 817
|||||||||||
Sbjct: 16978 ccccagtgtct 16968
>Sscrofa_Chr14
|| Length = 153851969
Score = 115 bits (58), Expect = 6e-23
Identities = 126/148 (85%), Gaps = 8/148 (5%)
Strand = Plus / Minus
Query: 203 gccgtccgcgcccgtgagcgc--ctgcgcggggttggcgcgagtctggccggcatggcgt 260
||||||||||||||||||||| |||||||||||||| ||| | |||||| ||| |||
Sbjct: 4542980 gccgtccgcgcccgtgagcgcgcctgcgcggggttggtgcgggactggccagcaaggcca 4542921
Query: 261 tccggcaggcgctgcagctggcggcctgcggc------ctggctgggggctcggctgcgg 314
|||||||||||||| ||| |||||||||||| ||||| ||||||||||||||||
Sbjct: 4542920 tccggcaggcgctgttgctagcggcctgcggctgcggcctggcggggggctcggctgcgg 4542861
Query: 315 tccttttctccgcagtggcggtggggaa 342
| ||||||||||| | ||||||||||||
Sbjct: 4542860 tgcttttctccgccgcggcggtggggaa 4542833
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,573,610
Number of extensions: 204
Number of successful extensions: 204
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 7
Length of query: 1183
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1162
Effective length of database: 2,808,413,156
Effective search space: 3263376087272
Effective search space used: 3263376087272
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)