Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001651
(1392 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069928.1| claudin-5 [Bos taurus]. 276 4e-74
Alignment gi|NP_991370.1| claudin-3 [Bos taurus]. 150 2e-36
Alignment gi|XP_002697981.1| PREDICTED: claudin 9-like [Bos taurus]. 142 7e-34
Alignment gi|XP_874805.1| PREDICTED: claudin 9 [Bos taurus]. 142 7e-34
Alignment gi|NP_001192626.1| claudin 6 [Bos taurus]. 142 9e-34
Alignment gi|XP_002697982.1| PREDICTED: claudin 6-like [Bos taurus]. 142 9e-34
Alignment gi|NP_001014413.1| claudin-4 [Bos taurus]. 140 4e-33
Alignment gi|NP_001035609.1| claudin-7 [Bos taurus]. 108 1e-23
Alignment gi|NP_001001854.1| claudin-1 [Bos taurus]. 106 4e-23
Alignment gi|NP_001091565.1| claudin-8 [Bos taurus]. 102 8e-22
>ref|NP_001069928.1| claudin-5 [Bos taurus].
Length = 218
Score = 276 bits (705), Expect = 4e-74
Identities = 141/218 (64%), Positives = 142/218 (65%)
Frame = +2
Query: 122 MGSAALEIXXXXXXXXXXXXXXXACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG 301
MGSAALEI ACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG
Sbjct: 1 MGSAALEILGLVLCLVGWVGLILACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG 60
Query: 302 HMQCKVYDSVLALSTEVQXXXXXXXXXXXXXXXXXXXXXXXXQCTTCVAPGPGKARVXXX 481
HMQCKVYDSVLALS EVQ QCTTCVAPGP KARV
Sbjct: 61 HMQCKVYDSVLALSPEVQAARALTVGAVLLALVALFVTLAGAQCTTCVAPGPAKARVALT 120
Query: 482 XXXXXXXXXXXXXXXXCWFANIVVREFYDPTVPMSQKYELGAALYIGWAASAXXXXXXXX 661
CWFANIVVREFYDPTVPMSQKYELGAALYIGWAASA
Sbjct: 121 GGALYALCGLLALVPLCWFANIVVREFYDPTVPMSQKYELGAALYIGWAASALLMCGGGL 180
Query: 662 XXXXAWLCAGRPDLGFPVKYSAPRRPTATGDYDKKNYV 775
AW+C GRPD FPVKYSA RRPTATGDYDKKNYV
Sbjct: 181 VCCGAWVCTGRPDFSFPVKYSASRRPTATGDYDKKNYV 218
>ref|NP_991370.1| claudin-3 [Bos taurus].
Length = 219
Score = 150 bits (380), Expect = 2e-36
Identities = 89/224 (39%), Positives = 111/224 (49%), Gaps = 8/224 (3%)
Frame = +2
Query: 128 SAALEIXXXXXXXXXXXXXXXACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHM 307
S LEI C LPMW+VTAF+ +I+TAQ TW+GLWM+CVVQSTG M
Sbjct: 2 SMGLEIAGTSLAVLGWLCTIVCCALPMWRVTAFIGSSIITAQITWEGLWMNCVVQSTGQM 61
Query: 308 QCKVYDSVLALSTEVQXXXXXXXXXXXXXXXXXXXXXXXXQCTTCVAPGPGKARVXXXXX 487
QCKVYDS+LAL ++Q QCT CV KA++
Sbjct: 62 QCKVYDSLLALPQDLQAARALIVIAILLAVFGLLVALVGAQCTNCVQDDTAKAKITIVAG 121
Query: 488 XXXXXXXXXXXXXXCWFANIVVREFYDPTVPMSQKYELGAALYIGWAASAXXXXXXXXXX 667
W AN ++R+FY+P VP +QK E+GAALY+GWAASA
Sbjct: 122 VLFLLAALLTLVPVSWSANTIIRDFYNPLVPEAQKREMGAALYVGWAASA------LQLL 175
Query: 668 XXAWLCAGRPD----LGFPVKYSAPRRP---TATGD-YDKKNYV 775
A LC P + YSAPR T+TG YD+K+YV
Sbjct: 176 GGALLCCSCPPRDNYARTKIVYSAPRSTGPVTSTGTAYDRKDYV 219
>ref|XP_002697981.1| PREDICTED: claudin 9-like [Bos taurus].
Length = 217
Score = 142 bits (358), Expect = 7e-34
Identities = 84/224 (37%), Positives = 109/224 (48%), Gaps = 6/224 (2%)
Frame = +2
Query: 122 MGSAALEIXXXXXXXXXXXXXXXACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG 301
M S LE+ +C LP+W+VTAF+ ++IV AQ W+GLWMSCVVQSTG
Sbjct: 1 MASTGLELLGMTLAVLGWLGTLVSCALPLWKVTAFIGNSIVVAQVVWEGLWMSCVVQSTG 60
Query: 302 HMQCKVYDSVLALSTEVQXXXXXXXXXXXXXXXXXXXXXXXXQCTTCVAPGPGKARVXXX 481
MQCKVYDS+LAL ++Q QCTTCV KAR+
Sbjct: 61 QMQCKVYDSLLALPQDLQAARALCVIALLLALLGVLVAITGAQCTTCVEDEGAKARIVLT 120
Query: 482 XXXXXXXXXXXXXXXXCWFANIVVREFYDPTVPMSQKYELGAALYIGWAASAXXXXXXXX 661
CW A+ ++++FY+P V + K ELGA+LY+GWAASA
Sbjct: 121 AGVLLLLAGILVLIPVCWTAHAIIQDFYNPMVAEALKRELGASLYLGWAASA------LL 174
Query: 662 XXXXAWLCAGRP------DLGFPVKYSAPRRPTATGDYDKKNYV 775
LC P G + YS P R A+G DK++YV
Sbjct: 175 LLGGGLLCCTCPPPQIERPQGQRLGYSIPSRSGASG-LDKRDYV 217
>ref|XP_874805.1| PREDICTED: claudin 9 [Bos taurus].
Length = 217
Score = 142 bits (358), Expect = 7e-34
Identities = 84/224 (37%), Positives = 109/224 (48%), Gaps = 6/224 (2%)
Frame = +2
Query: 122 MGSAALEIXXXXXXXXXXXXXXXACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG 301
M S LE+ +C LP+W+VTAF+ ++IV AQ W+GLWMSCVVQSTG
Sbjct: 1 MASTGLELLGMTLAVLGWLGTLVSCALPLWKVTAFIGNSIVVAQVVWEGLWMSCVVQSTG 60
Query: 302 HMQCKVYDSVLALSTEVQXXXXXXXXXXXXXXXXXXXXXXXXQCTTCVAPGPGKARVXXX 481
MQCKVYDS+LAL ++Q QCTTCV KAR+
Sbjct: 61 QMQCKVYDSLLALPQDLQAARALCVIALLLALLGVLVAITGAQCTTCVEDEGAKARIVLT 120
Query: 482 XXXXXXXXXXXXXXXXCWFANIVVREFYDPTVPMSQKYELGAALYIGWAASAXXXXXXXX 661
CW A+ ++++FY+P V + K ELGA+LY+GWAASA
Sbjct: 121 AGVLLLLAGILVLIPVCWTAHAIIQDFYNPMVAEALKRELGASLYLGWAASA------LL 174
Query: 662 XXXXAWLCAGRP------DLGFPVKYSAPRRPTATGDYDKKNYV 775
LC P G + YS P R A+G DK++YV
Sbjct: 175 LLGGGLLCCTCPPPQIERPQGQRLGYSIPSRSGASG-LDKRDYV 217
>ref|NP_001192626.1| claudin 6 [Bos taurus].
Length = 221
Score = 142 bits (357), Expect = 9e-34
Identities = 80/221 (36%), Positives = 106/221 (47%), Gaps = 3/221 (1%)
Frame = +2
Query: 122 MGSAALEIXXXXXXXXXXXXXXXACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG 301
M SA L+I +C LP+W+VTAF+ ++IV AQ W+GLWMSCVVQSTG
Sbjct: 1 MASAGLQILGIVLTLFGWVNALVSCTLPLWKVTAFIGNSIVVAQVVWEGLWMSCVVQSTG 60
Query: 302 HMQCKVYDSVLALSTEVQXXXXXXXXXXXXXXXXXXXXXXXXQCTTCVAPGPGKARVXXX 481
MQCKVYDS+LAL ++Q +CTTCV KAR+
Sbjct: 61 QMQCKVYDSLLALPQDLQAARALCVITLLVALLGLLVYLAGAKCTTCVEDKDSKARLVLT 120
Query: 482 XXXXXXXXXXXXXXXXCWFANIVVREFYDPTVPMSQKYELGAALYIGWAASAXXXXXXXX 661
CW A+ ++++FY+P V +QK ELGA+LY+GWAAS
Sbjct: 121 SGIIFVISGVLTLIPVCWTAHTIIQDFYNPLVVEAQKRELGASLYLGWAASGLLLLGGGL 180
Query: 662 XXXXAWLCAGRPDLGFPVKYSAPRRPTAT---GDYDKKNYV 775
R + +YS TA+ +Y KNYV
Sbjct: 181 LCCTCPSGGSRSSSHYMARYSVSAPHTASRGPSEYPTKNYV 221
>ref|XP_002697982.1| PREDICTED: claudin 6-like [Bos taurus].
Length = 221
Score = 142 bits (357), Expect = 9e-34
Identities = 80/221 (36%), Positives = 106/221 (47%), Gaps = 3/221 (1%)
Frame = +2
Query: 122 MGSAALEIXXXXXXXXXXXXXXXACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG 301
M SA L+I +C LP+W+VTAF+ ++IV AQ W+GLWMSCVVQSTG
Sbjct: 1 MASAGLQILGIVLTLFGWVNALVSCTLPLWKVTAFIGNSIVVAQVVWEGLWMSCVVQSTG 60
Query: 302 HMQCKVYDSVLALSTEVQXXXXXXXXXXXXXXXXXXXXXXXXQCTTCVAPGPGKARVXXX 481
MQCKVYDS+LAL ++Q +CTTCV KAR+
Sbjct: 61 QMQCKVYDSLLALPQDLQAARALCVITLLVALLGLLVYLAGAKCTTCVEDKDSKARLVLT 120
Query: 482 XXXXXXXXXXXXXXXXCWFANIVVREFYDPTVPMSQKYELGAALYIGWAASAXXXXXXXX 661
CW A+ ++++FY+P V +QK ELGA+LY+GWAAS
Sbjct: 121 SGIIFVISGVLTLIPVCWTAHTIIQDFYNPLVVEAQKRELGASLYLGWAASGLLLLGGGL 180
Query: 662 XXXXAWLCAGRPDLGFPVKYSAPRRPTAT---GDYDKKNYV 775
R + +YS TA+ +Y KNYV
Sbjct: 181 LCCTCPSGGSRSSSHYMARYSVSAPHTASRGPSEYPTKNYV 221
>ref|NP_001014413.1| claudin-4 [Bos taurus].
Length = 209
Score = 140 bits (352), Expect = 4e-33
Identities = 77/209 (36%), Positives = 101/209 (48%)
Frame = +2
Query: 122 MGSAALEIXXXXXXXXXXXXXXXACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG 301
M S L++ +C LPMW+VTAF+ NIVT+QT W+GLWM+CVVQSTG
Sbjct: 1 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 60
Query: 302 HMQCKVYDSVLALSTEVQXXXXXXXXXXXXXXXXXXXXXXXXQCTTCVAPGPGKARVXXX 481
MQCKVYDS+LAL ++Q +CT CV KA++
Sbjct: 61 QMQCKVYDSLLALPQDLQAARALIVICIILAVFGVLLSVVGGKCTNCVDDESSKAKIMIV 120
Query: 482 XXXXXXXXXXXXXXXXCWFANIVVREFYDPTVPMSQKYELGAALYIGWAASAXXXXXXXX 661
W AN V+R+FY+P V QK E+GA+LY+GWAA+
Sbjct: 121 AGVVFLLAGLLVMVPVSWTANNVIRDFYNPLVASGQKREMGASLYVGWAAAG---LLILG 177
Query: 662 XXXXAWLCAGRPDLGFPVKYSAPRRPTAT 748
+ C R D + KYSA R A+
Sbjct: 178 GALLCFNCPPRNDKPYSAKYSAARSAPAS 206
>ref|NP_001035609.1| claudin-7 [Bos taurus].
Length = 211
Score = 108 bits (270), Expect = 1e-23
Identities = 65/194 (33%), Positives = 88/194 (45%), Gaps = 5/194 (2%)
Frame = +2
Query: 191 AC-GLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQCKVYDSVLALSTEVQXXXX 367
AC +P WQ++++ NI+TAQ +KGLWM CV QSTG M CK+YDSVL+L +Q
Sbjct: 23 ACTAIPQWQMSSYAGDNIITAQAMYKGLWMDCVTQSTGMMSCKMYDSVLSLPAALQATRA 82
Query: 368 XXXXXXXXXXXXXXXXXXXXQCTTCVAPGP-GKARVXXXXXXXXXXXXXXXXXXXCWFAN 544
+CT C KAR+ W+ +
Sbjct: 83 LMVVSLVLGFLATFVATMGMKCTNCGGDDKVKKARIAMTGGIIFILAGLAALIACSWYGH 142
Query: 545 IVVREFYDPTVPMSQKYELGAALYIGWAASAXXXXXXXXXXXXAWLCAGRPDLGFPVKYS 724
+V +FY+P VPM+ KYE G A++IGWA SA A L P Y
Sbjct: 143 QIVSDFYNPLVPMNVKYEFGPAIFIGWAGSA------LVLLGGALLSCSCPGSESKAGYR 196
Query: 725 APR---RPTATGDY 757
APR +P + +Y
Sbjct: 197 APRSYPKPNSAKEY 210
>ref|NP_001001854.1| claudin-1 [Bos taurus].
Length = 211
Score = 106 bits (265), Expect = 4e-23
Identities = 56/173 (32%), Positives = 83/173 (47%), Gaps = 1/173 (0%)
Frame = +2
Query: 122 MGSAALEIXXXXXXXXXXXXXXXACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG 301
M +A L++ + LP W+V ++ NIVTAQ ++GLWMSCV QSTG
Sbjct: 1 MANAGLQLLGFILAFLGWIGSIVSTALPQWKVYSYASDNIVTAQAIYEGLWMSCVSQSTG 60
Query: 302 HMQCKVYDSVLALSTEVQXXXXXXXXXXXXXXXXXXXXXXXXQCTTCVAPGPG-KARVXX 478
+QCKV+DS+L L++ +Q +C C+ K R+
Sbjct: 61 QIQCKVFDSLLNLNSTLQATRALMVIGILLGLIAIFVATVGMKCMKCMEDDEAQKMRMAV 120
Query: 479 XXXXXXXXXXXXXXXXXCWFANIVVREFYDPTVPMSQKYELGAALYIGWAASA 637
W+ N +V+EFYDP P++ +YE G AL+IGWAA++
Sbjct: 121 FGGVIFLISGLAILVATAWYGNRIVQEFYDPMTPVNARYEFGQALFIGWAAAS 173
>ref|NP_001091565.1| claudin-8 [Bos taurus].
Length = 225
Score = 102 bits (254), Expect = 8e-22
Identities = 55/172 (31%), Positives = 79/172 (45%), Gaps = 1/172 (0%)
Frame = +2
Query: 122 MGSAALEIXXXXXXXXXXXXXXXACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG 301
M + AL+I A +P W+V+AF++ NIV + W+GLWMSC+ +
Sbjct: 1 MATYALQIAGLVLGGVGMVGTVAATVMPQWRVSAFIESNIVVFENLWEGLWMSCMRHANI 60
Query: 302 HMQCKVYDSVLALSTEVQXXXXXXXXXXXXXXXXXXXXXXXXQCTTCVAPGPG-KARVXX 478
MQCK+YDS+LALS ++Q +CT C K +
Sbjct: 61 RMQCKIYDSLLALSPDLQAARGLMCAASVLAFLAFLTAVLGMKCTRCAGDDDKVKGHILL 120
Query: 479 XXXXXXXXXXXXXXXXXCWFANIVVREFYDPTVPMSQKYELGAALYIGWAAS 634
W AN ++R+FY+P V ++QK ELG ALYIGW +
Sbjct: 121 TAGVIFIITGLVVLIPVSWVANSIIRDFYNPIVDIAQKRELGEALYIGWTTA 172
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 55,533,831
Number of extensions: 1663040
Number of successful extensions: 9431
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 9243
Number of HSP's successfully gapped: 22
Length of query: 464
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 358
Effective length of database: 14,174,046
Effective search space: 5074308468
Effective search space used: 5074308468
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001651
(1392 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_543546.2| PREDICTED: similar to claudin 5 [Canis familiar... 287 1e-77
Alignment gi|NP_001003088.1| claudin-3 [Canis lupus familiaris]. 147 2e-35
Alignment gi|XP_547168.1| PREDICTED: similar to claudin 6 [Canis familiar... 144 2e-34
Alignment gi|XP_547169.1| PREDICTED: similar to claudin 9 [Canis familiar... 142 8e-34
Alignment gi|XP_546920.2| PREDICTED: similar to claudin 4 [Canis familiar... 140 2e-33
Alignment gi|XP_546584.2| PREDICTED: similar to Claudin-7 (CLDN-7) [Canis... 104 2e-22
Alignment gi|XP_851577.1| PREDICTED: similar to claudin 8 [Canis familiar... 103 4e-22
Alignment gi|XP_850248.1| PREDICTED: similar to Claudin-1 [Canis familiar... 102 1e-21
Alignment gi|XP_848612.1| PREDICTED: similar to claudin 19 (predicted) [C... 96 6e-20
Alignment gi|XP_544844.1| PREDICTED: similar to Claudin-17 [Canis familia... 94 2e-19
>ref|XP_543546.2| PREDICTED: similar to claudin 5 [Canis familiaris].
Length = 302
Score = 287 bits (735), Expect = 1e-77
Identities = 147/223 (65%), Positives = 148/223 (66%)
Frame = +2
Query: 107 VLSPAMGSAALEIXXXXXXXXXXXXXXXACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCV 286
V PAMGSAALEI ACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCV
Sbjct: 80 VSPPAMGSAALEILGLVLCLVGWVGLILACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCV 139
Query: 287 VQSTGHMQCKVYDSVLALSTEVQXXXXXXXXXXXXXXXXXXXXXXXXQCTTCVAPGPGKA 466
VQSTGHMQCKVYDSVLALSTEVQ QCTTCVAPGP KA
Sbjct: 140 VQSTGHMQCKVYDSVLALSTEVQAARALTVGAVLLALVALFVTLAGAQCTTCVAPGPAKA 199
Query: 467 RVXXXXXXXXXXXXXXXXXXXCWFANIVVREFYDPTVPMSQKYELGAALYIGWAASAXXX 646
RV CWFANIVVREFYDPTVPMSQKYELGAALYIGWAASA
Sbjct: 200 RVALTGGALYALCGLLALVPLCWFANIVVREFYDPTVPMSQKYELGAALYIGWAASALLM 259
Query: 647 XXXXXXXXXAWLCAGRPDLGFPVKYSAPRRPTATGDYDKKNYV 775
AW+CAGRPD FPVKYSAPRRPTATGDYDKKNYV
Sbjct: 260 CGGGLVCCGAWVCAGRPDFSFPVKYSAPRRPTATGDYDKKNYV 302
>ref|NP_001003088.1| claudin-3 [Canis lupus familiaris].
Length = 218
Score = 147 bits (372), Expect = 2e-35
Identities = 85/220 (38%), Positives = 107/220 (48%), Gaps = 4/220 (1%)
Frame = +2
Query: 128 SAALEIXXXXXXXXXXXXXXXACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHM 307
S LEI C LPMW+VTAF+ +I+TAQ TW+GLWM+CVVQSTG M
Sbjct: 2 SMGLEIAGTSLAVLGWLSTIVCCALPMWRVTAFIGSSIITAQITWEGLWMNCVVQSTGQM 61
Query: 308 QCKVYDSVLALSTEVQXXXXXXXXXXXXXXXXXXXXXXXXQCTTCVAPGPGKARVXXXXX 487
QCKVYDS+LAL ++Q QCT CV KA++
Sbjct: 62 QCKVYDSLLALPQDLQAARALIVVSILLAAFGLLVALVGAQCTNCVQDDTAKAKITIVAG 121
Query: 488 XXXXXXXXXXXXXXCWFANIVVREFYDPTVPMSQKYELGAALYIGWAASAXXXXXXXXXX 667
W AN ++R+FY+P VP +QK E+GA LY+GWAA+A
Sbjct: 122 VLFLLAALLTLVPVSWSANTIIRDFYNPLVPDAQKREMGAGLYVGWAAAALQLLGGALLC 181
Query: 668 XXAWLCAGRPDLGFPVK--YSAPRR--PTATGDYDKKNYV 775
C R P K YSAPR P + YD+K+YV
Sbjct: 182 CS---CPPRDKKYAPTKIVYSAPRSAGPGTSTAYDRKDYV 218
>ref|XP_547168.1| PREDICTED: similar to claudin 6 [Canis familiaris].
Length = 221
Score = 144 bits (363), Expect = 2e-34
Identities = 81/221 (36%), Positives = 106/221 (47%), Gaps = 3/221 (1%)
Frame = +2
Query: 122 MGSAALEIXXXXXXXXXXXXXXXACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG 301
M SA L+I +C LP+W+VTAF+ ++IV AQ W+GLWMSCVVQSTG
Sbjct: 1 MASAGLQILGIILTLLGWVNALVSCALPLWKVTAFIGNSIVVAQVVWEGLWMSCVVQSTG 60
Query: 302 HMQCKVYDSVLALSTEVQXXXXXXXXXXXXXXXXXXXXXXXXQCTTCVAPGPGKARVXXX 481
MQCKVYDS+LAL ++Q +CTTCV KAR+
Sbjct: 61 QMQCKVYDSLLALPQDLQAARALCVVALLLALLGLLVYLAGAKCTTCVEDKDSKARLVLV 120
Query: 482 XXXXXXXXXXXXXXXXCWFANIVVREFYDPTVPMSQKYELGAALYIGWAASAXXXXXXXX 661
CW A+ ++R+FY+P V +QK ELGA+LY+GWAAS
Sbjct: 121 SGIIFVISGVLTLIPVCWTAHAIIRDFYNPLVSDAQKRELGASLYLGWAASGLLLLGGGL 180
Query: 662 XXXXAWLCAGRPDLGFPVKYSAPRRPTAT---GDYDKKNYV 775
GR + +YSA + +Y KNYV
Sbjct: 181 LCCTCPSGGGRSSSHYMARYSASAAHATSPCAPEYPTKNYV 221
>ref|XP_547169.1| PREDICTED: similar to claudin 9 [Canis familiaris].
Length = 217
Score = 142 bits (358), Expect = 8e-34
Identities = 84/224 (37%), Positives = 110/224 (49%), Gaps = 6/224 (2%)
Frame = +2
Query: 122 MGSAALEIXXXXXXXXXXXXXXXACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG 301
M S ALE+ +C LP+W+VTAF+ ++IV AQ W+GLWMSCVVQSTG
Sbjct: 1 MASTALELLGMTLAVLGWLGTLVSCALPLWKVTAFIGNSIVVAQVVWEGLWMSCVVQSTG 60
Query: 302 HMQCKVYDSVLALSTEVQXXXXXXXXXXXXXXXXXXXXXXXXQCTTCVAPGPGKARVXXX 481
MQCKVYDS+LAL ++Q QCTTCV KAR+
Sbjct: 61 QMQCKVYDSLLALPQDLQAARALCVVALLLALLGLLVAITGAQCTTCVEDEGAKARIVLT 120
Query: 482 XXXXXXXXXXXXXXXXCWFANIVVREFYDPTVPMSQKYELGAALYIGWAASAXXXXXXXX 661
CW A+ ++++FY+P V + K ELGA+LY+GWAA+A
Sbjct: 121 AGVLLLLSGLLVLIPVCWTAHAIIQDFYNPLVAEALKRELGASLYLGWAAAA------LL 174
Query: 662 XXXXAWLCAGRP------DLGFPVKYSAPRRPTATGDYDKKNYV 775
LC P G + YS P R A+G DK++YV
Sbjct: 175 MLGGGLLCCTCPPPQMDRPRGPRLGYSIPSRSGASG-LDKRDYV 217
>ref|XP_546920.2| PREDICTED: similar to claudin 4 [Canis familiaris].
Length = 210
Score = 140 bits (354), Expect = 2e-33
Identities = 77/212 (36%), Positives = 99/212 (46%)
Frame = +2
Query: 122 MGSAALEIXXXXXXXXXXXXXXXACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG 301
M S L++ +C LPMW+VTAF+ NIVT+QT W+GLWM+CVVQSTG
Sbjct: 1 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 60
Query: 302 HMQCKVYDSVLALSTEVQXXXXXXXXXXXXXXXXXXXXXXXXQCTTCVAPGPGKARVXXX 481
MQCKVYDS+LAL ++Q +CT CV KA+
Sbjct: 61 QMQCKVYDSLLALPQDLQAARALMVVSIILAALGVLLSVVGGKCTNCVEDESAKAKTMIV 120
Query: 482 XXXXXXXXXXXXXXXXCWFANIVVREFYDPTVPMSQKYELGAALYIGWAASAXXXXXXXX 661
W AN ++R+FY+P V QK E+GA+LY+GWAAS
Sbjct: 121 AGVVFLLAGLLVMVPASWTANNIIRDFYNPLVVSGQKREMGASLYVGWAASGLLLLGGAL 180
Query: 662 XXXXAWLCAGRPDLGFPVKYSAPRRPTATGDY 757
C R D + KYSA R +Y
Sbjct: 181 LCCN---CPPRADKPYSAKYSAAARSAPASNY 209
>ref|XP_546584.2| PREDICTED: similar to Claudin-7 (CLDN-7) [Canis familiaris].
Length = 217
Score = 104 bits (260), Expect = 2e-22
Identities = 65/196 (33%), Positives = 87/196 (44%), Gaps = 10/196 (5%)
Frame = +2
Query: 200 LPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQCKVYDSVLALSTEVQXXXXXXXX 379
+P WQ++++ NI+TAQ +KGLWM CV QSTG M CK+YDSVLALS +Q
Sbjct: 27 IPQWQMSSYAGDNIITAQAMYKGLWMECVTQSTGMMSCKMYDSVLALSAALQATRALMVV 86
Query: 380 XXXXXXXXXXXXXXXXQCTTCVAPGP-GKARVXXXXXXXXXXXXXXXXXXXC------WF 538
+CT C KAR+ W+
Sbjct: 87 SLVLGFLAMFVATMGMKCTNCGGDDKVKKARIAMTGGIIFIVGGEQQAPGLAALVACSWY 146
Query: 539 ANIVVREFYDPTVPMSQKYELGAALYIGWAASAXXXXXXXXXXXXAWLCAGRPDLGFPVK 718
+ +V +FY+P VPM+ KYE G A++IGWA SA A L P
Sbjct: 147 GHQIVTDFYNPLVPMNIKYEFGPAIFIGWAGSA------LVILGGALLSCSCPGSESKAG 200
Query: 719 YSAPR---RPTATGDY 757
Y APR +P + +Y
Sbjct: 201 YRAPRSYPKPNSAKEY 216
>ref|XP_851577.1| PREDICTED: similar to claudin 8 [Canis familiaris].
Length = 225
Score = 103 bits (257), Expect = 4e-22
Identities = 53/146 (36%), Positives = 72/146 (49%), Gaps = 1/146 (0%)
Frame = +2
Query: 200 LPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQCKVYDSVLALSTEVQXXXXXXXX 379
+P W+V+AF+ NIV + W+GLWM+CV Q+ MQCKVYDS+LALS ++Q
Sbjct: 27 MPQWRVSAFIGSNIVVFENFWEGLWMNCVRQANIRMQCKVYDSLLALSPDLQASRGLMCA 86
Query: 380 XXXXXXXXXXXXXXXXQCTTCVAPGPG-KARVXXXXXXXXXXXXXXXXXXXCWFANIVVR 556
+CT C K + W AN ++R
Sbjct: 87 ASVLSFLAFMTAVLGMKCTRCTGDDEKIKGHILLTAGIIFIVTGILVLIPVSWVANSIIR 146
Query: 557 EFYDPTVPMSQKYELGAALYIGWAAS 634
EFY+P V +QK+ELG ALYIGW +
Sbjct: 147 EFYNPIVETAQKHELGDALYIGWTTA 172
>ref|XP_850248.1| PREDICTED: similar to Claudin-1 [Canis familiaris].
Length = 211
Score = 102 bits (253), Expect = 1e-21
Identities = 53/173 (30%), Positives = 82/173 (47%), Gaps = 1/173 (0%)
Frame = +2
Query: 122 MGSAALEIXXXXXXXXXXXXXXXACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG 301
M +A L++ + LP W++ ++ NIVTAQ ++GLWMSCV QSTG
Sbjct: 1 MANAGLQLLGFLLAFLGWVGSIVSTALPQWKIYSYAGDNIVTAQAIYEGLWMSCVSQSTG 60
Query: 302 HMQCKVYDSVLALSTEVQXXXXXXXXXXXXXXXXXXXXXXXXQCTTCVAPGP-GKARVXX 478
+QCKV+DS+L L++ +Q +C C+ K R+
Sbjct: 61 QIQCKVFDSLLNLNSTLQATRALMVIGILLGLIAIFVATIGMKCMKCMEDDEVQKMRMAV 120
Query: 479 XXXXXXXXXXXXXXXXXCWFANIVVREFYDPTVPMSQKYELGAALYIGWAASA 637
W+ N +V++FYDP P++ +YE G AL+ GWAA++
Sbjct: 121 IGGVIFLIAGLAVLVATAWYGNRIVQDFYDPMTPVNARYEFGQALFTGWAAAS 173
>ref|XP_848612.1| PREDICTED: similar to claudin 19 (predicted) [Canis familiaris].
Length = 302
Score = 96.3 bits (238), Expect = 6e-20
Identities = 49/173 (28%), Positives = 81/173 (46%), Gaps = 1/173 (0%)
Frame = +2
Query: 119 AMGSAALEIXXXXXXXXXXXXXXXACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQST 298
AM ++ L++ + LP W+ +++ I+TA ++GLWMSC QST
Sbjct: 91 AMANSGLQLLGYFLALGGWVGIIASTALPQWKQSSYAGDAIITAVGLYEGLWMSCASQST 150
Query: 299 GHMQCKVYDSVLALSTEVQXXXXXXXXXXXXXXXXXXXXXXXXQCTTCVAPGP-GKARVX 475
G +QCK+YDS+LAL +Q +CT P K R+
Sbjct: 151 GQVQCKLYDSLLALEGHIQSARALMVVAVLLGFVAMVLSVVGMKCTRVGDSNPTAKGRIA 210
Query: 476 XXXXXXXXXXXXXXXXXXCWFANIVVREFYDPTVPMSQKYELGAALYIGWAAS 634
W+A +V +EF++P+ P++ +YE G+AL++GWA++
Sbjct: 211 ISGGVLFLLAGLCTLTAVSWYATLVTQEFFNPSTPVNARYEFGSALFVGWASA 263
>ref|XP_544844.1| PREDICTED: similar to Claudin-17 [Canis familiaris].
Length = 224
Score = 94.4 bits (233), Expect = 2e-19
Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 1/147 (0%)
Frame = +2
Query: 200 LPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQCKVYDSVLALSTEVQXXXXXXXX 379
LP W+V+AF+ NI+ + W+GLWM+CV Q+ +QCK Y S+LAL ++
Sbjct: 27 LPQWRVSAFVGSNIIVFERLWEGLWMNCVRQAKIRLQCKFYSSLLALPPALEAARALMCV 86
Query: 380 XXXXXXXXXXXXXXXXQCTTCVAPGP-GKARVXXXXXXXXXXXXXXXXXXXCWFANIVVR 556
+ C KA + CW ANI++R
Sbjct: 87 AVALSFIALLIGICGMKQIQCTGSNERAKAYLLGTSGVLFILTGIFVLIPVCWTANIIIR 146
Query: 557 EFYDPTVPMSQKYELGAALYIGWAASA 637
+FY+P + + QK ELGAAL++GWA++A
Sbjct: 147 DFYNPAIHVGQKRELGAALFLGWASTA 173
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 57,748,643
Number of extensions: 1695403
Number of successful extensions: 9527
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 9288
Number of HSP's successfully gapped: 17
Length of query: 464
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 358
Effective length of database: 15,340,888
Effective search space: 5492037904
Effective search space used: 5492037904
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001651
(1392 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001124333.1| claudin-5 [Homo sapiens]. 280 2e-75
Alignment gi|NP_003268.2| claudin-5 [Homo sapiens]. 280 2e-75
Alignment gi|NP_067018.2| claudin-6 [Homo sapiens]. 144 3e-34
Alignment gi|NP_001297.1| claudin-3 [Homo sapiens]. 143 3e-34
Alignment gi|NP_066192.1| claudin-9 [Homo sapiens]. 140 2e-33
Alignment gi|NP_001296.1| claudin-4 [Homo sapiens]. 135 9e-32
Alignment gi|NP_001171951.1| claudin-7 isoform 1 [Homo sapiens]. 107 2e-23
Alignment gi|NP_001298.3| claudin-7 isoform 1 [Homo sapiens]. 107 2e-23
Alignment gi|NP_066924.1| claudin-1 [Homo sapiens]. 104 2e-22
Alignment gi|NP_955360.1| claudin-8 [Homo sapiens]. 102 8e-22
>ref|NP_001124333.1| claudin-5 [Homo sapiens].
Length = 303
Score = 280 bits (716), Expect = 2e-75
Identities = 142/219 (64%), Positives = 146/219 (66%)
Frame = +2
Query: 119 AMGSAALEIXXXXXXXXXXXXXXXACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQST 298
AMGSAALEI ACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQST
Sbjct: 85 AMGSAALEILGLVLCLVGWGGLILACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQST 144
Query: 299 GHMQCKVYDSVLALSTEVQXXXXXXXXXXXXXXXXXXXXXXXXQCTTCVAPGPGKARVXX 478
GHMQCKVYDSVLALSTEVQ QCTTCVAPGP KARV
Sbjct: 145 GHMQCKVYDSVLALSTEVQAARALTVSAVLLAFVALFVTLAGAQCTTCVAPGPAKARVAL 204
Query: 479 XXXXXXXXXXXXXXXXXCWFANIVVREFYDPTVPMSQKYELGAALYIGWAASAXXXXXXX 658
CWFANIVVREFYDP+VP+SQKYELGAALYIGWAA+A
Sbjct: 205 TGGVLYLFCGLLALVPLCWFANIVVREFYDPSVPVSQKYELGAALYIGWAATALLMVGGC 264
Query: 659 XXXXXAWLCAGRPDLGFPVKYSAPRRPTATGDYDKKNYV 775
AW+C GRPDL FPVKYSAPRRPTATGDYDKKNYV
Sbjct: 265 LLCCGAWVCTGRPDLSFPVKYSAPRRPTATGDYDKKNYV 303
>ref|NP_003268.2| claudin-5 [Homo sapiens].
Length = 303
Score = 280 bits (716), Expect = 2e-75
Identities = 142/219 (64%), Positives = 146/219 (66%)
Frame = +2
Query: 119 AMGSAALEIXXXXXXXXXXXXXXXACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQST 298
AMGSAALEI ACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQST
Sbjct: 85 AMGSAALEILGLVLCLVGWGGLILACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQST 144
Query: 299 GHMQCKVYDSVLALSTEVQXXXXXXXXXXXXXXXXXXXXXXXXQCTTCVAPGPGKARVXX 478
GHMQCKVYDSVLALSTEVQ QCTTCVAPGP KARV
Sbjct: 145 GHMQCKVYDSVLALSTEVQAARALTVSAVLLAFVALFVTLAGAQCTTCVAPGPAKARVAL 204
Query: 479 XXXXXXXXXXXXXXXXXCWFANIVVREFYDPTVPMSQKYELGAALYIGWAASAXXXXXXX 658
CWFANIVVREFYDP+VP+SQKYELGAALYIGWAA+A
Sbjct: 205 TGGVLYLFCGLLALVPLCWFANIVVREFYDPSVPVSQKYELGAALYIGWAATALLMVGGC 264
Query: 659 XXXXXAWLCAGRPDLGFPVKYSAPRRPTATGDYDKKNYV 775
AW+C GRPDL FPVKYSAPRRPTATGDYDKKNYV
Sbjct: 265 LLCCGAWVCTGRPDLSFPVKYSAPRRPTATGDYDKKNYV 303
>ref|NP_067018.2| claudin-6 [Homo sapiens].
Length = 220
Score = 144 bits (362), Expect = 3e-34
Identities = 84/226 (37%), Positives = 108/226 (47%), Gaps = 8/226 (3%)
Frame = +2
Query: 122 MGSAALEIXXXXXXXXXXXXXXXACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG 301
M SA ++I +C LPMW+VTAF+ ++IV AQ W+GLWMSCVVQSTG
Sbjct: 1 MASAGMQILGVVLTLLGWVNGLVSCALPMWKVTAFIGNSIVVAQVVWEGLWMSCVVQSTG 60
Query: 302 HMQCKVYDSVLALSTEVQXXXXXXXXXXXXXXXXXXXXXXXXQCTTCVAPGPGKARVXXX 481
MQCKVYDS+LAL ++Q +CTTCV KAR+
Sbjct: 61 QMQCKVYDSLLALPQDLQAARALCVIALLVALFGLLVYLAGAKCTTCVEEKDSKARLVLT 120
Query: 482 XXXXXXXXXXXXXXXXCWFANIVVREFYDPTVPMSQKYELGAALYIGWAASAXXXXXXXX 661
CW A+ ++R+FY+P V +QK ELGA+LY+GWAAS
Sbjct: 121 SGIVFVISGVLTLIPVCWTAHAIIRDFYNPLVAEAQKRELGASLYLGWAASG------LL 174
Query: 662 XXXXAWLCAGRPDLG------FPVKY--SAPRRPTATGDYDKKNYV 775
LC P G + +Y SAP +Y KNYV
Sbjct: 175 LLGGGLLCCTCPSGGSQGPSHYMARYSTSAPAISRGPSEYPTKNYV 220
>ref|NP_001297.1| claudin-3 [Homo sapiens].
Length = 220
Score = 143 bits (361), Expect = 3e-34
Identities = 85/225 (37%), Positives = 108/225 (48%), Gaps = 9/225 (4%)
Frame = +2
Query: 128 SAALEIXXXXXXXXXXXXXXXACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHM 307
S LEI C LPMW+V+AF+ NI+T+Q W+GLWM+CVVQSTG M
Sbjct: 2 SMGLEITGTALAVLGWLGTIVCCALPMWRVSAFIGSNIITSQNIWEGLWMNCVVQSTGQM 61
Query: 308 QCKVYDSVLALSTEVQXXXXXXXXXXXXXXXXXXXXXXXXQCTTCVAPGPGKARVXXXXX 487
QCKVYDS+LAL ++Q QCT CV KA++
Sbjct: 62 QCKVYDSLLALPQDLQAARALIVVAILLAAFGLLVALVGAQCTNCVQDDTAKAKITIVAG 121
Query: 488 XXXXXXXXXXXXXXCWFANIVVREFYDPTVPMSQKYELGAALYIGWAASAXXXXXXXXXX 667
W AN ++R+FY+P VP +QK E+GA LY+GWAA+A
Sbjct: 122 VLFLLAALLTLVPVSWSANTIIRDFYNPVVPEAQKREMGAGLYVGWAAAA------LQLL 175
Query: 668 XXAWLCAGRPD-----LGFPVKYSAPRR--PTAT--GDYDKKNYV 775
A LC P V YSAPR P A+ YD+K+YV
Sbjct: 176 GGALLCCSCPPREKKYTATKVVYSAPRSTGPGASLGTGYDRKDYV 220
>ref|NP_066192.1| claudin-9 [Homo sapiens].
Length = 217
Score = 140 bits (354), Expect = 2e-33
Identities = 83/224 (37%), Positives = 109/224 (48%), Gaps = 6/224 (2%)
Frame = +2
Query: 122 MGSAALEIXXXXXXXXXXXXXXXACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG 301
M S LE+ +C LP+W+VTAF+ ++IV AQ W+GLWMSCVVQSTG
Sbjct: 1 MASTGLELLGMTLAVLGWLGTLVSCALPLWKVTAFIGNSIVVAQVVWEGLWMSCVVQSTG 60
Query: 302 HMQCKVYDSVLALSTEVQXXXXXXXXXXXXXXXXXXXXXXXXQCTTCVAPGPGKARVXXX 481
MQCKVYDS+LAL ++Q QCTTCV KAR+
Sbjct: 61 QMQCKVYDSLLALPQDLQAARALCVIALLLALLGLLVAITGAQCTTCVEDEGAKARIVLT 120
Query: 482 XXXXXXXXXXXXXXXXCWFANIVVREFYDPTVPMSQKYELGAALYIGWAASAXXXXXXXX 661
CW A+ ++++FY+P V + K ELGA+LY+GWAA+A
Sbjct: 121 AGVILLLAGILVLIPVCWTAHAIIQDFYNPLVAEALKRELGASLYLGWAAAA------LL 174
Query: 662 XXXXAWLCAGRP------DLGFPVKYSAPRRPTATGDYDKKNYV 775
LC P G + YS P R A+G DK++YV
Sbjct: 175 MLGGGLLCCTCPPPQVERPRGPRLGYSIPSRSGASG-LDKRDYV 217
>ref|NP_001296.1| claudin-4 [Homo sapiens].
Length = 209
Score = 135 bits (340), Expect = 9e-32
Identities = 74/209 (35%), Positives = 98/209 (46%)
Frame = +2
Query: 122 MGSAALEIXXXXXXXXXXXXXXXACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG 301
M S L++ C LPMW+VTAF+ NIVT+QT W+GLWM+CVVQSTG
Sbjct: 1 MASMGLQVMGIALAVLGWLAVMLCCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 60
Query: 302 HMQCKVYDSVLALSTEVQXXXXXXXXXXXXXXXXXXXXXXXXQCTTCVAPGPGKARVXXX 481
MQCKVYDS+LAL ++Q +CT C+ KA+
Sbjct: 61 QMQCKVYDSLLALPQDLQAARALVIISIIVAALGVLLSVVGGKCTNCLEDESAKAKTMIV 120
Query: 482 XXXXXXXXXXXXXXXXCWFANIVVREFYDPTVPMSQKYELGAALYIGWAASAXXXXXXXX 661
W A+ ++++FY+P V QK E+GA+LY+GWAAS
Sbjct: 121 AGVVFLLAGLMVIVPVSWTAHNIIQDFYNPLVASGQKREMGASLYVGWAASGLLLLGGGL 180
Query: 662 XXXXAWLCAGRPDLGFPVKYSAPRRPTAT 748
C R D + KYSA R A+
Sbjct: 181 LCCN---CPPRTDKPYSAKYSAARSAAAS 206
>ref|NP_001171951.1| claudin-7 isoform 1 [Homo sapiens].
Length = 211
Score = 107 bits (268), Expect = 2e-23
Identities = 56/151 (37%), Positives = 76/151 (50%), Gaps = 2/151 (1%)
Frame = +2
Query: 191 AC-GLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQCKVYDSVLALSTEVQXXXX 367
AC +P WQ++++ NI+TAQ +KGLWM CV QSTG M CK+YDSVLALS +Q
Sbjct: 23 ACTAIPQWQMSSYAGDNIITAQAMYKGLWMDCVTQSTGMMSCKMYDSVLALSAALQATRA 82
Query: 368 XXXXXXXXXXXXXXXXXXXXQCTTCVAPGP-GKARVXXXXXXXXXXXXXXXXXXXCWFAN 544
+CT C KAR+ W+ +
Sbjct: 83 LMVVSLVLGFLAMFVATMGMKCTRCGGDDKVKKARIAMGGGIIFIVAGLAALVACSWYGH 142
Query: 545 IVVREFYDPTVPMSQKYELGAALYIGWAASA 637
+V +FY+P +P + KYE G A++IGWA SA
Sbjct: 143 QIVTDFYNPLIPTNIKYEFGPAIFIGWAGSA 173
>ref|NP_001298.3| claudin-7 isoform 1 [Homo sapiens].
Length = 211
Score = 107 bits (268), Expect = 2e-23
Identities = 56/151 (37%), Positives = 76/151 (50%), Gaps = 2/151 (1%)
Frame = +2
Query: 191 AC-GLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQCKVYDSVLALSTEVQXXXX 367
AC +P WQ++++ NI+TAQ +KGLWM CV QSTG M CK+YDSVLALS +Q
Sbjct: 23 ACTAIPQWQMSSYAGDNIITAQAMYKGLWMDCVTQSTGMMSCKMYDSVLALSAALQATRA 82
Query: 368 XXXXXXXXXXXXXXXXXXXXQCTTCVAPGP-GKARVXXXXXXXXXXXXXXXXXXXCWFAN 544
+CT C KAR+ W+ +
Sbjct: 83 LMVVSLVLGFLAMFVATMGMKCTRCGGDDKVKKARIAMGGGIIFIVAGLAALVACSWYGH 142
Query: 545 IVVREFYDPTVPMSQKYELGAALYIGWAASA 637
+V +FY+P +P + KYE G A++IGWA SA
Sbjct: 143 QIVTDFYNPLIPTNIKYEFGPAIFIGWAGSA 173
>ref|NP_066924.1| claudin-1 [Homo sapiens].
Length = 211
Score = 104 bits (259), Expect = 2e-22
Identities = 55/173 (31%), Positives = 82/173 (47%), Gaps = 1/173 (0%)
Frame = +2
Query: 122 MGSAALEIXXXXXXXXXXXXXXXACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG 301
M +A L++ + LP W++ ++ NIVTAQ ++GLWMSCV QSTG
Sbjct: 1 MANAGLQLLGFILAFLGWIGAIVSTALPQWRIYSYAGDNIVTAQAMYEGLWMSCVSQSTG 60
Query: 302 HMQCKVYDSVLALSTEVQXXXXXXXXXXXXXXXXXXXXXXXXQCTTCVAPGP-GKARVXX 478
+QCKV+DS+L LS+ +Q +C C+ K R+
Sbjct: 61 QIQCKVFDSLLNLSSTLQATRALMVVGILLGVIAIFVATVGMKCMKCLEDDEVQKMRMAV 120
Query: 479 XXXXXXXXXXXXXXXXXCWFANIVVREFYDPTVPMSQKYELGAALYIGWAASA 637
W+ N +V+EFYDP P++ +YE G AL+ GWAA++
Sbjct: 121 IGGAIFLLAGLAILVATAWYGNRIVQEFYDPMTPVNARYEFGQALFTGWAAAS 173
>ref|NP_955360.1| claudin-8 [Homo sapiens].
Length = 225
Score = 102 bits (254), Expect = 8e-22
Identities = 55/172 (31%), Positives = 80/172 (46%), Gaps = 1/172 (0%)
Frame = +2
Query: 122 MGSAALEIXXXXXXXXXXXXXXXACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG 301
M + ALEI +P W+V+AF+++NIV + W+GLWM+CV Q+
Sbjct: 1 MATHALEIAGLFLGGVGMVGTVAVTVMPQWRVSAFIENNIVVFENFWEGLWMNCVRQANI 60
Query: 302 HMQCKVYDSVLALSTEVQXXXXXXXXXXXXXXXXXXXXXXXXQCTTCVAPGPG-KARVXX 478
MQCK+YDS+LALS ++Q +CT C KA +
Sbjct: 61 RMQCKIYDSLLALSPDLQAARGLMCAASVMSFLAFMMAILGMKCTRCTGDNEKVKAHILL 120
Query: 479 XXXXXXXXXXXXXXXXXCWFANIVVREFYDPTVPMSQKYELGAALYIGWAAS 634
W AN ++R+FY+ V ++QK ELG ALY+GW +
Sbjct: 121 TAGIIFIITGMVVLIPVSWVANAIIRDFYNSIVNVAQKRELGEALYLGWTTA 172
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 56,423,085
Number of extensions: 1644230
Number of successful extensions: 8869
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 8689
Number of HSP's successfully gapped: 27
Length of query: 464
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 358
Effective length of database: 14,802,980
Effective search space: 5299466840
Effective search space used: 5299466840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001651
(1392 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038833.2| claudin-5 [Mus musculus]. 271 7e-73
Alignment gi|NP_034032.1| claudin-3 [Mus musculus]. 147 3e-35
Alignment gi|NP_064689.2| claudin-9 [Mus musculus]. 142 8e-34
Alignment gi|NP_061247.1| claudin-6 [Mus musculus]. 135 8e-32
Alignment gi|NP_034033.1| claudin-4 [Mus musculus]. 135 1e-31
Alignment gi|NP_001180548.1| claudin-7 [Mus musculus]. 105 6e-23
Alignment gi|NP_058583.1| claudin-7 [Mus musculus]. 105 6e-23
Alignment gi|NP_061248.1| claudin-8 [Mus musculus]. 100 2e-21
Alignment gi|NP_057883.1| claudin-1 [Mus musculus]. 100 4e-21
Alignment gi|NP_001033679.1| claudin-19 isoform 1 [Mus musculus]. 95 1e-19
>ref|NP_038833.2| claudin-5 [Mus musculus].
Length = 218
Score = 271 bits (694), Expect = 7e-73
Identities = 138/218 (63%), Positives = 142/218 (65%)
Frame = +2
Query: 122 MGSAALEIXXXXXXXXXXXXXXXACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG 301
MGSAALEI ACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG
Sbjct: 1 MGSAALEILGLVLCLVGWVGLILACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG 60
Query: 302 HMQCKVYDSVLALSTEVQXXXXXXXXXXXXXXXXXXXXXXXXQCTTCVAPGPGKARVXXX 481
HMQCKVY+SVLALS EVQ QCTTCVAPGP KARV
Sbjct: 61 HMQCKVYESVLALSAEVQAARALTVGAVLLALVALFVTLTGAQCTTCVAPGPVKARVALT 120
Query: 482 XXXXXXXXXXXXXXXXCWFANIVVREFYDPTVPMSQKYELGAALYIGWAASAXXXXXXXX 661
CWFANIVVREFYDPTVP+SQKYELGAALYIGWAASA
Sbjct: 121 GGALYAVCGLLALVPLCWFANIVVREFYDPTVPVSQKYELGAALYIGWAASALLMCGGGL 180
Query: 662 XXXXAWLCAGRPDLGFPVKYSAPRRPTATGDYDKKNYV 775
AW+C GRP+ FPVKYSAPRRPTA GDYDKKNYV
Sbjct: 181 VCCGAWVCTGRPEFSFPVKYSAPRRPTANGDYDKKNYV 218
>ref|NP_034032.1| claudin-3 [Mus musculus].
Length = 219
Score = 147 bits (370), Expect = 3e-35
Identities = 88/224 (39%), Positives = 111/224 (49%), Gaps = 8/224 (3%)
Frame = +2
Query: 128 SAALEIXXXXXXXXXXXXXXXACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHM 307
S LEI C LPMW+V+AF+ +I+TAQ TW+GLWM+CVVQSTG M
Sbjct: 2 SMGLEITGTSLAVLGWLCTIVCCALPMWRVSAFIGSSIITAQITWEGLWMNCVVQSTGQM 61
Query: 308 QCKVYDSVLALSTEVQXXXXXXXXXXXXXXXXXXXXXXXXQCTTCVAPGPGKARVXXXXX 487
QCK+YDS+LAL ++Q QCT CV KA++
Sbjct: 62 QCKMYDSLLALPQDLQAARALIVVSILLAAFGLLVALVGAQCTNCVQDETAKAKITIVAG 121
Query: 488 XXXXXXXXXXXXXXCWFANIVVREFYDPTVPMSQKYELGAALYIGWAASAXXXXXXXXXX 667
W AN ++R+FY+P VP +QK E+GA LY+GWAA+A
Sbjct: 122 VLFLLAALLTLVPVSWSANTIIRDFYNPLVPEAQKREMGAGLYVGWAAAA------LQLL 175
Query: 668 XXAWLCAGRP--DLGFPVK--YSAPRRP---TATGD-YDKKNYV 775
A LC P D P K YSAPR T TG YD+K+YV
Sbjct: 176 GGALLCCSCPPRDKYAPTKILYSAPRSTGPGTGTGTAYDRKDYV 219
>ref|NP_064689.2| claudin-9 [Mus musculus].
Length = 217
Score = 142 bits (357), Expect = 8e-34
Identities = 83/224 (37%), Positives = 109/224 (48%), Gaps = 6/224 (2%)
Frame = +2
Query: 122 MGSAALEIXXXXXXXXXXXXXXXACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG 301
M S LE+ +C LP+W+VTAF+ ++IV AQ W+GLWMSCVVQSTG
Sbjct: 1 MASTGLELLGMTLAVLGWLGTLVSCALPLWKVTAFIGNSIVVAQVVWEGLWMSCVVQSTG 60
Query: 302 HMQCKVYDSVLALSTEVQXXXXXXXXXXXXXXXXXXXXXXXXQCTTCVAPGPGKARVXXX 481
MQCKVYDS+LAL ++Q QCTTCV KAR+
Sbjct: 61 QMQCKVYDSLLALPQDLQAARALCVVALLLALLGLLVAITGAQCTTCVEDEGAKARIVLT 120
Query: 482 XXXXXXXXXXXXXXXXCWFANIVVREFYDPTVPMSQKYELGAALYIGWAASAXXXXXXXX 661
CW A+ ++++FY+P V + K ELGA+LY+GWAA+A
Sbjct: 121 AGVLLLLSGILVLIPVCWTAHAIIQDFYNPLVAEALKRELGASLYLGWAAAA------LL 174
Query: 662 XXXXAWLCAGRPDLGFP------VKYSAPRRPTATGDYDKKNYV 775
LC P F + YS P R A+G DK++YV
Sbjct: 175 MLGGGLLCCTCPPSHFERPRGPRLGYSIPSRSGASG-LDKRDYV 217
>ref|NP_061247.1| claudin-6 [Mus musculus].
Length = 219
Score = 135 bits (340), Expect = 8e-32
Identities = 69/171 (40%), Positives = 91/171 (53%)
Frame = +2
Query: 122 MGSAALEIXXXXXXXXXXXXXXXACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG 301
M S L+I +C LPMW+VTAF+ ++IV AQ W+GLWMSCVVQSTG
Sbjct: 1 MASTGLQILGIVLTLLGWVNALVSCALPMWKVTAFIGNSIVVAQMVWEGLWMSCVVQSTG 60
Query: 302 HMQCKVYDSVLALSTEVQXXXXXXXXXXXXXXXXXXXXXXXXQCTTCVAPGPGKARVXXX 481
MQCKVYDS+LAL ++Q +CTTCV K+R+
Sbjct: 61 QMQCKVYDSLLALPQDLQAARALCVVTLLIVLLGLLVYLAGAKCTTCVEDRNSKSRLVLI 120
Query: 482 XXXXXXXXXXXXXXXXCWFANIVVREFYDPTVPMSQKYELGAALYIGWAAS 634
CW A+ ++++FY+P V +QK ELGA+LY+GWAAS
Sbjct: 121 SGIIFVISGVLTLIPVCWTAHSIIQDFYNPLVADAQKRELGASLYLGWAAS 171
>ref|NP_034033.1| claudin-4 [Mus musculus].
Length = 210
Score = 135 bits (339), Expect = 1e-31
Identities = 77/213 (36%), Positives = 102/213 (47%), Gaps = 4/213 (1%)
Frame = +2
Query: 122 MGSAALEIXXXXXXXXXXXXXXXACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG 301
M S L++ +C LPMW+VTAF+ NIVTAQT+W+GLWM+CVVQSTG
Sbjct: 1 MASMGLQVLGISLAVLGWLGIILSCALPMWRVTAFIGSNIVTAQTSWEGLWMNCVVQSTG 60
Query: 302 HMQCKVYDSVLALSTEVQXXXXXXXXXXXXXXXXXXXXXXXXQCTTCVAPGPGKARVXXX 481
MQCK+YDS+LAL ++Q +CT C+ KA++
Sbjct: 61 QMQCKMYDSMLALPQDLQAARALMVISIIVGALGMLLSVVGGKCTNCMEDETVKAKIMIT 120
Query: 482 XXXXXXXXXXXXXXXXCWFANIVVREFYDPTVPMSQKYELGAALYIGWAASAXXXXXXXX 661
W A+ V+R+FY+P V QK E+GA+LY+GWAAS
Sbjct: 121 AGAVFIVASMLIMVPVSWTAHNVIRDFYNPMVASGQKREMGASLYVGWAASG------LL 174
Query: 662 XXXXAWLCAGRP----DLGFPVKYSAPRRPTAT 748
LC P D + KYSA R A+
Sbjct: 175 LLGGGLLCCSCPPRSNDKPYSAKYSAARSVPAS 207
>ref|NP_001180548.1| claudin-7 [Mus musculus].
Length = 211
Score = 105 bits (263), Expect = 6e-23
Identities = 54/147 (36%), Positives = 72/147 (48%), Gaps = 1/147 (0%)
Frame = +2
Query: 200 LPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQCKVYDSVLALSTEVQXXXXXXXX 379
+P WQ++++ NI+TAQ +KGLWM CV QSTG M CK+YDSVLAL +Q
Sbjct: 27 IPQWQMSSYAGDNIITAQAMYKGLWMECVTQSTGMMSCKMYDSVLALPGALQATRALMVV 86
Query: 380 XXXXXXXXXXXXXXXXQCTTCVAPGPG-KARVXXXXXXXXXXXXXXXXXXXCWFANIVVR 556
+CT C KAR+ W + +V
Sbjct: 87 SLVLGFLAMFVATMGMKCTRCGGDDKAKKARIAMTGGIVFIVAGLAALVACSWIGHQIVT 146
Query: 557 EFYDPTVPMSQKYELGAALYIGWAASA 637
+FY+P PM+ KYE G A++IGWA SA
Sbjct: 147 DFYNPLTPMNVKYEFGPAIFIGWAGSA 173
>ref|NP_058583.1| claudin-7 [Mus musculus].
Length = 211
Score = 105 bits (263), Expect = 6e-23
Identities = 54/147 (36%), Positives = 72/147 (48%), Gaps = 1/147 (0%)
Frame = +2
Query: 200 LPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQCKVYDSVLALSTEVQXXXXXXXX 379
+P WQ++++ NI+TAQ +KGLWM CV QSTG M CK+YDSVLAL +Q
Sbjct: 27 IPQWQMSSYAGDNIITAQAMYKGLWMECVTQSTGMMSCKMYDSVLALPGALQATRALMVV 86
Query: 380 XXXXXXXXXXXXXXXXQCTTCVAPGPG-KARVXXXXXXXXXXXXXXXXXXXCWFANIVVR 556
+CT C KAR+ W + +V
Sbjct: 87 SLVLGFLAMFVATMGMKCTRCGGDDKAKKARIAMTGGIVFIVAGLAALVACSWIGHQIVT 146
Query: 557 EFYDPTVPMSQKYELGAALYIGWAASA 637
+FY+P PM+ KYE G A++IGWA SA
Sbjct: 147 DFYNPLTPMNVKYEFGPAIFIGWAGSA 173
>ref|NP_061248.1| claudin-8 [Mus musculus].
Length = 225
Score = 100 bits (250), Expect = 2e-21
Identities = 50/146 (34%), Positives = 73/146 (50%), Gaps = 1/146 (0%)
Frame = +2
Query: 200 LPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQCKVYDSVLALSTEVQXXXXXXXX 379
+P W+V+AF++ NIV + W+GLWM+C+ + MQCKVYDS+LALS ++Q
Sbjct: 27 MPQWRVSAFIESNIVVFENRWEGLWMNCMRHANIRMQCKVYDSLLALSPDLQASRGLMCA 86
Query: 380 XXXXXXXXXXXXXXXXQCTTCVAPGPG-KARVXXXXXXXXXXXXXXXXXXXCWFANIVVR 556
+CT C K+R+ W AN ++R
Sbjct: 87 ASVLAFLAFMTAILGMKCTRCTGDDENVKSRILLTAGIIFFITGLVVLIPVSWVANSIIR 146
Query: 557 EFYDPTVPMSQKYELGAALYIGWAAS 634
+FY+P V ++ K ELG ALYIGW +
Sbjct: 147 DFYNPLVDVALKRELGEALYIGWTTA 172
>ref|NP_057883.1| claudin-1 [Mus musculus].
Length = 211
Score = 100 bits (248), Expect = 4e-21
Identities = 53/173 (30%), Positives = 81/173 (46%), Gaps = 1/173 (0%)
Frame = +2
Query: 122 MGSAALEIXXXXXXXXXXXXXXXACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG 301
M +A L++ + LP W++ ++ NIVTAQ ++GLWMSCV QSTG
Sbjct: 1 MANAGLQLLGFILASLGWIGSIVSTALPQWKIYSYAGDNIVTAQAIYEGLWMSCVSQSTG 60
Query: 302 HMQCKVYDSVLALSTEVQXXXXXXXXXXXXXXXXXXXXXXXXQCTTCVAPGP-GKARVXX 478
+QCKV+DS+L L++ +Q +C C+ K +
Sbjct: 61 QIQCKVFDSLLNLNSTLQATRALMVIGILLGLIAIFVSTIGMKCMRCLEDDEVQKMWMAV 120
Query: 479 XXXXXXXXXXXXXXXXXCWFANIVVREFYDPTVPMSQKYELGAALYIGWAASA 637
W+ N +V+EFYDP P++ +YE G AL+ GWAA++
Sbjct: 121 IGGIIFLISGLATLVATAWYGNRIVQEFYDPLTPINARYEFGQALFTGWAAAS 173
>ref|NP_001033679.1| claudin-19 isoform 1 [Mus musculus].
Length = 224
Score = 94.7 bits (234), Expect = 1e-19
Identities = 47/146 (32%), Positives = 73/146 (50%), Gaps = 1/146 (0%)
Frame = +2
Query: 200 LPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQCKVYDSVLALSTEVQXXXXXXXX 379
LP W+ +++ I+TA ++GLWMSC QSTG +QCK+YDS+LAL +Q
Sbjct: 27 LPQWKQSSYAGDAIITAVGLYEGLWMSCASQSTGQVQCKLYDSLLALDGHIQSARALMVV 86
Query: 380 XXXXXXXXXXXXXXXXQCTTCVAPGP-GKARVXXXXXXXXXXXXXXXXXXXCWFANIVVR 556
+CT P K+RV W+A +V +
Sbjct: 87 AVLLGFVAMVLSVVGMKCTRVGDSNPTAKSRVAISGGALFLLAGLCTLTAVSWYATLVTQ 146
Query: 557 EFYDPTVPMSQKYELGAALYIGWAAS 634
EF++P+ P++ +YE G AL++GWA++
Sbjct: 147 EFFNPSTPVNARYEFGPALFVGWASA 172
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 47,354,261
Number of extensions: 1347938
Number of successful extensions: 6924
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 6796
Number of HSP's successfully gapped: 22
Length of query: 464
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 359
Effective length of database: 12,463,779
Effective search space: 4474496661
Effective search space used: 4474496661
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001651
(1392 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001155108.1| claudin-5 [Sus scrofa]. 290 1e-78
Alignment gi|NP_001155119.1| claudin-9 [Sus scrofa]. 141 8e-34
Alignment gi|NP_001155117.1| claudin-6 [Sus scrofa]. 141 1e-33
Alignment gi|NP_001155109.1| claudin-4 [Sus scrofa]. 138 6e-33
Alignment gi|NP_001153548.1| claudin-7 [Sus scrofa]. 107 2e-23
Alignment gi|XP_003358291.1| PREDICTED: claudin-7-like [Sus scrofa]. 107 2e-23
Alignment gi|XP_003358797.1| PREDICTED: claudin-1-like [Sus scrofa]. 103 3e-22
Alignment gi|NP_001155118.1| claudin-8 [Sus scrofa]. 101 1e-21
Alignment gi|NP_001153555.1| claudin-17 [Sus scrofa]. 97 2e-20
Alignment gi|NP_001153547.1| claudin-3 [Sus scrofa]. 96 5e-20
>ref|NP_001155108.1| claudin-5 [Sus scrofa].
Length = 218
Score = 290 bits (742), Expect = 1e-78
Identities = 148/218 (67%), Positives = 148/218 (67%)
Frame = +2
Query: 122 MGSAALEIXXXXXXXXXXXXXXXACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG 301
MGSAALEI ACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG
Sbjct: 1 MGSAALEILGLVLCLVGWVGLILACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG 60
Query: 302 HMQCKVYDSVLALSTEVQXXXXXXXXXXXXXXXXXXXXXXXXQCTTCVAPGPGKARVXXX 481
HMQCKVYDSVLALSTEVQ QCTTCVAPGPGKARV
Sbjct: 61 HMQCKVYDSVLALSTEVQAARALTVGAVLLALVALFVTLAGAQCTTCVAPGPGKARVALT 120
Query: 482 XXXXXXXXXXXXXXXXCWFANIVVREFYDPTVPMSQKYELGAALYIGWAASAXXXXXXXX 661
CWFANIVVREFYDPTVPMSQKYELGAALYIGWAASA
Sbjct: 121 GGALYALCGLLALVPLCWFANIVVREFYDPTVPMSQKYELGAALYIGWAASALLMCGGGL 180
Query: 662 XXXXAWLCAGRPDLGFPVKYSAPRRPTATGDYDKKNYV 775
AWLCAGRPDLGFPVKYSAPRRPTATGDYDKKNYV
Sbjct: 181 VCCGAWLCAGRPDLGFPVKYSAPRRPTATGDYDKKNYV 218
>ref|NP_001155119.1| claudin-9 [Sus scrofa].
Length = 217
Score = 141 bits (356), Expect = 8e-34
Identities = 84/224 (37%), Positives = 108/224 (48%), Gaps = 6/224 (2%)
Frame = +2
Query: 122 MGSAALEIXXXXXXXXXXXXXXXACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG 301
M SA LE+ C LP+W+VTAF+ ++IV AQ W+GLWMSC VQSTG
Sbjct: 1 MASAGLELLGMSLAVLGWLGTLVCCALPLWKVTAFIGNSIVVAQVVWEGLWMSCAVQSTG 60
Query: 302 HMQCKVYDSVLALSTEVQXXXXXXXXXXXXXXXXXXXXXXXXQCTTCVAPGPGKARVXXX 481
MQCKVYDS+LAL ++Q QCTTCV KAR+
Sbjct: 61 QMQCKVYDSLLALPQDLQAARALCVVALLLALLGLLVAITGAQCTTCVEDEGAKARIVLT 120
Query: 482 XXXXXXXXXXXXXXXXCWFANIVVREFYDPTVPMSQKYELGAALYIGWAASAXXXXXXXX 661
CW A+ ++++FY+P V + K ELGA+LY+GWAASA
Sbjct: 121 AGVVLLLSGILVLIPVCWTAHAIIQDFYNPLVAEALKRELGASLYLGWAASA------LL 174
Query: 662 XXXXAWLCAGRP------DLGFPVKYSAPRRPTATGDYDKKNYV 775
LC P G + YS P R A+G DK++YV
Sbjct: 175 MLGGGLLCCTCPPPQIDRPRGPRLGYSIPSRSGASG-LDKRDYV 217
>ref|NP_001155117.1| claudin-6 [Sus scrofa].
Length = 221
Score = 141 bits (355), Expect = 1e-33
Identities = 80/221 (36%), Positives = 106/221 (47%), Gaps = 3/221 (1%)
Frame = +2
Query: 122 MGSAALEIXXXXXXXXXXXXXXXACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG 301
M SA L+I C LP+W+VTAF+ ++IV AQ W+GLWMSCVVQSTG
Sbjct: 1 MASAGLQILGIVLTLFGWVNALVCCALPLWKVTAFIGNSIVVAQVVWEGLWMSCVVQSTG 60
Query: 302 HMQCKVYDSVLALSTEVQXXXXXXXXXXXXXXXXXXXXXXXXQCTTCVAPGPGKARVXXX 481
MQCKVYDS+LAL ++Q +CTTCV KAR+
Sbjct: 61 QMQCKVYDSLLALPQDLQAARALCVITLLVVLLGLLVYLSGAKCTTCVEDKDTKARLVLT 120
Query: 482 XXXXXXXXXXXXXXXXCWFANIVVREFYDPTVPMSQKYELGAALYIGWAASAXXXXXXXX 661
CW A+ ++++FY+P V +QK ELGA+LY+GWAAS
Sbjct: 121 SGIIFVLSGVLTLIPVCWTAHAIIQDFYNPLVAEAQKRELGASLYLGWAASGLLLLGGGL 180
Query: 662 XXXXAWLCAGRPDLGFPVKYSAPRRPTAT---GDYDKKNYV 775
+ + +YSA TA+ +Y KNYV
Sbjct: 181 LCCTCPSGRSQGSSHYMARYSASAPHTASRGPSEYPTKNYV 221
>ref|NP_001155109.1| claudin-4 [Sus scrofa].
Length = 209
Score = 138 bits (348), Expect = 6e-33
Identities = 78/209 (37%), Positives = 99/209 (47%)
Frame = +2
Query: 122 MGSAALEIXXXXXXXXXXXXXXXACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG 301
M S L++ +C LPMW+VTAF+ NIVT+QT W+GLWM+CVVQSTG
Sbjct: 1 MASMGLQVMGIALAVLGWLGAILSCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG 60
Query: 302 HMQCKVYDSVLALSTEVQXXXXXXXXXXXXXXXXXXXXXXXXQCTTCVAPGPGKARVXXX 481
MQCKVYDS+LAL ++Q +CT CV KA+
Sbjct: 61 QMQCKVYDSLLALPQDLQAARALIVICIILAVLGVLLSVVGGKCTNCVDDESAKAKTMIV 120
Query: 482 XXXXXXXXXXXXXXXXCWFANIVVREFYDPTVPMSQKYELGAALYIGWAASAXXXXXXXX 661
W A+ V+R+FY+P V QK E+GA+LYIGWAAS
Sbjct: 121 AGVVFLLAGLLVMVPVSWTAHNVIRDFYNPLVASGQKREMGASLYIGWAASGLLMLGGAL 180
Query: 662 XXXXAWLCAGRPDLGFPVKYSAPRRPTAT 748
C R D + KYSA R A+
Sbjct: 181 LCCN---CPPRTDKPYSAKYSAARSAPAS 206
>ref|NP_001153548.1| claudin-7 [Sus scrofa].
Length = 211
Score = 107 bits (267), Expect = 2e-23
Identities = 56/151 (37%), Positives = 75/151 (49%), Gaps = 2/151 (1%)
Frame = +2
Query: 191 AC-GLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQCKVYDSVLALSTEVQXXXX 367
AC +P WQ++++ NI+TAQ +KGLWM CV QSTG M CK YDSVLALS +Q
Sbjct: 23 ACTAIPQWQMSSYAGDNIITAQAMYKGLWMDCVTQSTGMMSCKTYDSVLALSAALQATRA 82
Query: 368 XXXXXXXXXXXXXXXXXXXXQCTTCVAPGP-GKARVXXXXXXXXXXXXXXXXXXXCWFAN 544
+CT C KAR+ W+ +
Sbjct: 83 LMVVSLVLGLMAMFVGTMGMKCTNCGGDDKVKKARIAMTGGIIFIVAGLCALIACSWYGH 142
Query: 545 IVVREFYDPTVPMSQKYELGAALYIGWAASA 637
+V +FY+P VP + KYE G A++IGWA S+
Sbjct: 143 QIVTDFYNPLVPTNVKYEFGPAIFIGWAGSS 173
>ref|XP_003358291.1| PREDICTED: claudin-7-like [Sus scrofa].
Length = 211
Score = 107 bits (267), Expect = 2e-23
Identities = 56/151 (37%), Positives = 75/151 (49%), Gaps = 2/151 (1%)
Frame = +2
Query: 191 AC-GLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQCKVYDSVLALSTEVQXXXX 367
AC +P WQ++++ NI+TAQ +KGLWM CV QSTG M CK YDSVLALS +Q
Sbjct: 23 ACTAIPQWQMSSYAGDNIITAQAMYKGLWMDCVTQSTGMMSCKTYDSVLALSAALQATRA 82
Query: 368 XXXXXXXXXXXXXXXXXXXXQCTTCVAPGP-GKARVXXXXXXXXXXXXXXXXXXXCWFAN 544
+CT C KAR+ W+ +
Sbjct: 83 LMVVSLVLGLMAMFVGTMGMKCTNCGGDDKVKKARIAMTGGIIFIVAGLCALIACSWYGH 142
Query: 545 IVVREFYDPTVPMSQKYELGAALYIGWAASA 637
+V +FY+P VP + KYE G A++IGWA S+
Sbjct: 143 QIVTDFYNPLVPTNVKYEFGPAIFIGWAGSS 173
>ref|XP_003358797.1| PREDICTED: claudin-1-like [Sus scrofa].
Length = 211
Score = 103 bits (256), Expect = 3e-22
Identities = 54/173 (31%), Positives = 82/173 (47%), Gaps = 1/173 (0%)
Frame = +2
Query: 122 MGSAALEIXXXXXXXXXXXXXXXACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG 301
M +A L++ + LP W++ ++ NIVTAQ ++GLWMSCV QSTG
Sbjct: 1 MANAGLQLLGFILAFLGWIGSIVSTALPQWKIYSYAGDNIVTAQAIYEGLWMSCVSQSTG 60
Query: 302 HMQCKVYDSVLALSTEVQXXXXXXXXXXXXXXXXXXXXXXXXQCTTCVAPGP-GKARVXX 478
+QCKV+DS+L L++ +Q +C C+ K R+
Sbjct: 61 QIQCKVFDSLLNLNSTLQATRALMVIGILLGLIAIFVATVGMKCMKCMEDDEVQKMRMAV 120
Query: 479 XXXXXXXXXXXXXXXXXCWFANIVVREFYDPTVPMSQKYELGAALYIGWAASA 637
W+ N +V+EFYDP P++ +YE G AL+ GWAA++
Sbjct: 121 IGGVIFLISGLAILVATAWYGNRIVQEFYDPMTPVNARYEFGQALFTGWAAAS 173
>ref|NP_001155118.1| claudin-8 [Sus scrofa].
Length = 225
Score = 101 bits (251), Expect = 1e-21
Identities = 55/172 (31%), Positives = 80/172 (46%), Gaps = 1/172 (0%)
Frame = +2
Query: 122 MGSAALEIXXXXXXXXXXXXXXXACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG 301
M S AL+I +P W+V+AF+ NIV + W+GLWM+C+ +
Sbjct: 1 MASNALQIAGLVLGGVGMVGTVAVTVMPQWRVSAFIGSNIVVFENLWEGLWMNCMRHANI 60
Query: 302 HMQCKVYDSVLALSTEVQXXXXXXXXXXXXXXXXXXXXXXXXQCTTCVAPGPG-KARVXX 478
MQCK+YDS+LALS ++Q +CT C + K+ +
Sbjct: 61 RMQCKIYDSLLALSPDLQASRGLMCTASVLSFLAFMTAILGMKCTRCTSDDEKVKSYILL 120
Query: 479 XXXXXXXXXXXXXXXXXCWFANIVVREFYDPTVPMSQKYELGAALYIGWAAS 634
W AN ++R+FY+P V ++QK ELG ALYIGW A+
Sbjct: 121 TAGVLFVLTGFVVLIPVSWVANSIIRDFYNPIVDIAQKRELGEALYIGWTAA 172
>ref|NP_001153555.1| claudin-17 [Sus scrofa].
Length = 225
Score = 97.4 bits (241), Expect = 2e-20
Identities = 50/147 (34%), Positives = 72/147 (48%), Gaps = 1/147 (0%)
Frame = +2
Query: 200 LPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQCKVYDSVLALSTEVQXXXXXXXX 379
LP W+V+AF+ NI+ + W+GLWM+CV Q+ +QCK Y S+LALS ++
Sbjct: 27 LPQWRVSAFIGSNIIVFERIWEGLWMNCVRQAKARLQCKFYSSMLALSPALEAARALMCV 86
Query: 380 XXXXXXXXXXXXXXXXQCTTCVAPGP-GKARVXXXXXXXXXXXXXXXXXXXCWFANIVVR 556
+ C KA + CW ANI++R
Sbjct: 87 AVALSLIALIIGICGMKKIQCTGSNERAKAYLLGTSGVLFILTGIFVLIPVCWTANIIIR 146
Query: 557 EFYDPTVPMSQKYELGAALYIGWAASA 637
+FY+P V + QK ELGAAL++GWA+ A
Sbjct: 147 DFYNPAVHVGQKRELGAALFLGWASVA 173
>ref|NP_001153547.1| claudin-3 [Sus scrofa].
Length = 141
Score = 95.9 bits (237), Expect = 5e-20
Identities = 48/115 (41%), Positives = 60/115 (52%)
Frame = +2
Query: 128 SAALEIXXXXXXXXXXXXXXXACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHM 307
S LEI C LPMW+VTAF+ +I+TA+ TW+GLWM+CVVQSTG M
Sbjct: 2 SMGLEIAGTSLAVMGWLSTIVCCALPMWRVTAFIGSSIITARITWEGLWMNCVVQSTGQM 61
Query: 308 QCKVYDSVLALSTEVQXXXXXXXXXXXXXXXXXXXXXXXXQCTTCVAPGPGKARV 472
QCKVYDS+LAL ++Q QCT CV KA++
Sbjct: 62 QCKVYDSLLALPQDLQAARALIVVAILLAAFGLLVALVGAQCTNCVQDDTAKAKI 116
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,066,179
Number of extensions: 1097217
Number of successful extensions: 6038
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 5919
Number of HSP's successfully gapped: 17
Length of query: 464
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 362
Effective length of database: 8,804,438
Effective search space: 3187206556
Effective search space used: 3187206556
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001651
(1392 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 2646 0.0
Sscrofa_Chr03 125 7e-26
Sscrofa_Chr13 64 2e-07
>Sscrofa_Chr14
|| Length = 153851969
Score = 2646 bits (1335), Expect = 0.0
Identities = 1351/1355 (99%), Gaps = 1/1355 (0%)
Strand = Plus / Minus
Query: 18 agactcgaggctgtgctgagaagccgcgggtccgggggactgagggagtgagccgtgcgc 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54779438 agactcgaggctgtgctgagaagccgcgggtccgggggactgagggagtgagccgtgcgc 54779379
Query: 78 gcccggaggccccgggccgtcgggcgcgcgtcttgtctccagccatgggttcggcagcgc 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54779378 gcccggaggccccgggccgtcgggcgcgcgtcttgtctccagccatgggttcggcagcgc 54779319
Query: 138 tggaaatcctcggcctcgtgctgtgcctggtgggctgggtaggcctgatcctggcgtgcg 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54779318 tggaaatcctcggcctcgtgctgtgcctggtgggctgggtaggcctgatcctggcgtgcg 54779259
Query: 198 ggctgcccatgtggcaggtaaccgccttcctggaccacaacatcgtgacggcgcagacca 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54779258 ggctgcccatgtggcaggtaaccgccttcctggaccacaacatcgtgacggcgcagacca 54779199
Query: 258 cttggaaggggctgtggatgtcctgcgtggtgcagagcacggggcatatgcagtgcaagg 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54779198 cttggaaggggctgtggatgtcctgcgtggtgcagagcacggggcatatgcagtgcaagg 54779139
Query: 318 tgtacgactcggtgctggcgctgagcaccgaagtgcaggcagcgcgggccctcaccgtcg 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54779138 tgtacgactcggtgctggcgctgagcaccgaagtgcaggcagcgcgggccctcaccgtcg 54779079
Query: 378 gcgcagtgctgctggcgctcgttgcgctcttcgtgaccttggcaggtgcgcagtgcacca 437
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 54779078 gcgcagtgctgctggcgctcgttgcgctcttcgttaccttggcaggtgcgcagtgcacca 54779019
Query: 438 cctgcgtggcccccggcccgggcaaggcacgcgtagctctcaccggcggcgcgctctacg 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54779018 cctgcgtggcccccggcccgggcaaggcacgcgtagctctcaccggcggcgcgctctacg 54778959
Query: 498 cgctctgcgggctgctggcgctcgtgccactctgctggttcgccaacatcgtggtccgcg 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54778958 cgctctgcgggctgctggcgctcgtgccactctgctggttcgccaacatcgtggtccgcg 54778899
Query: 558 agttctacgacccgactgtgcccatgtcgcagaagtacgagctgggcgccgccctctaca 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54778898 agttctacgacccgactgtgcccatgtcgcagaagtacgagctgggcgccgccctctaca 54778839
Query: 618 tcggctgggccgcctcggcgctgctcatgtgtggaggcggcctcgtgtgctgtggtgcct 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54778838 tcggctgggccgcctcggcgctgctcatgtgtggaggcggcctcgtgtgctgtggtgcct 54778779
Query: 678 ggctctgtgccggccgccccgacctcggcttccctgtcaagtattcggccccgcggcggc 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54778778 ggctctgtgccggccgccccgacctcggcttccctgtcaagtattcggccccgcggcggc 54778719
Query: 738 ccacggccaccggcgactacgacaagaagaactacgtctgagggtgtcgggcacaacagg 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54778718 ccacggccaccggcgactacgacaagaagaactacgtctgagggtgtcgggcacaacagg 54778659
Query: 798 gccgcgagctggactagccagaggaactccgctttggagggcggccttcgctggagtgcg 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54778658 gccgcgagctggactagccagaggaactccgctttggagggcggccttcgctggagtgcg 54778599
Query: 858 cggcgcactggctccgcagaactcccagctctgtgcccagaccagactttgcccgcaccc 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54778598 cggcgcactggctccgcagaactcccagctctgtgcccagaccagactttgcccgcaccc 54778539
Query: 918 cgtcctctccggccgccgctggccggccctgctgccgcgcaaagcaacgcgcacttggga 977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54778538 cgtcctctccggccgccgctggccggccctgctgccgcgcaaagcaacgcgcacttggga 54778479
Query: 978 ggactcgctcggtttctttttctgcgtgcagtgttggctccaacgtgggtagggcgtgcg 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54778478 ggactcgctcggtttctttttctgcgtgcagtgttggctccaacgtgggtagggcgtgcg 54778419
Query: 1038 ttcctttggctgtgtgggcaccatactaaagatgacgctccctgcccgaccctcagagtc 1097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54778418 ttcctttggctgtgtgggcaccatactaaagatgacgctccctgcccgaccctcagagtc 54778359
Query: 1098 tcggatgccggccactccccagcggctcctgctgattttagaggcagcgggagagcagag 1157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54778358 tcggatgccggccactccccagcggctcctgctgattttagaggcagcgggagagcagag 54778299
Query: 1158 agcgcagggaccccagagggaagcctacagctggcctttattccatcatcgggctagccc 1217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54778298 agcgcagggaccccagagggaagcctacagctggcctttattccatcatcgggctagccc 54778239
Query: 1218 cagggtaggggcgagagacttggcctcaccctagcagttccccaggcgacaacgcttatg 1277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54778238 cagggtaggggcgagagacttggcctcaccctagcagttccccaggcgacaacgcttatg 54778179
Query: 1278 ggcaccagatcctgggtgtggggctggggtcctgccctcagtcacagcttggggggaagg 1337
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 54778178 ggcaccagatcctgggtgtggggctggggccctgccctcagtcacagcttg-ggggaagg 54778120
Query: 1338 gttaaatctgcttagtaaatagtttggaaactctc 1372
|||||||||||||||||||||||||||| ||||||
Sbjct: 54778119 gttaaatctgcttagtaaatagtttggatactctc 54778085
>Sscrofa_Chr03
|| Length = 144787322
Score = 125 bits (63), Expect = 7e-26
Identities = 126/147 (85%)
Strand = Plus / Minus
Query: 194 tgcgggctgcccatgtggcaggtaaccgccttcctggaccacaacatcgtgacggcgcag 253
|||| |||||||||||||| || || |||||| | | | ||||||||| ||| |||||
Sbjct: 10778309 tgcgcgctgcccatgtggcgcgtcacggccttcatcggcagcaacatcgtcacgtcgcag 10778250
Query: 254 accacttggaaggggctgtggatgtcctgcgtggtgcagagcacggggcatatgcagtgc 313
|||| ||| |||| ||||||||| ||||||||||||||||||||| || |||||||||
Sbjct: 10778249 accatctgggagggcctgtggatgaactgcgtggtgcagagcacgggccagatgcagtgc 10778190
Query: 314 aaggtgtacgactcggtgctggcgctg 340
||||||||||||||| |||||||||||
Sbjct: 10778189 aaggtgtacgactcgctgctggcgctg 10778163
Score = 113 bits (57), Expect = 3e-22
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 264 aggggctgtggatgtcctgcgtggtgcagagcacggggcatatgcagtgcaaggtgtacg 323
|||||||||||||||||||||||||||||||||| || || |||||||||||||||||||
Sbjct: 40526159 aggggctgtggatgtcctgcgtggtgcagagcacaggccagatgcagtgcaaggtgtacg 40526218
Query: 324 actcggtgctggc 336
||||| |||||||
Sbjct: 40526219 actcgctgctggc 40526231
Score = 105 bits (53), Expect = 6e-20
Identities = 68/73 (93%)
Strand = Plus / Minus
Query: 264 aggggctgtggatgtcctgcgtggtgcagagcacggggcatatgcagtgcaaggtgtacg 323
|||||||||||||||||||||||||||||||||| || || ||||||||||||||||| |
Sbjct: 40528421 aggggctgtggatgtcctgcgtggtgcagagcacaggccagatgcagtgcaaggtgtatg 40528362
Query: 324 actcggtgctggc 336
||||| |||||||
Sbjct: 40528361 actcgctgctggc 40528349
Score = 97.6 bits (49), Expect = 2e-17
Identities = 82/93 (88%)
Strand = Plus / Minus
Query: 248 gcgcagaccacttggaaggggctgtggatgtcctgcgtggtgcagagcacggggcatatg 307
||||||| ||| ||| |||| ||||||||| ||||||||||||||||||||| || |||
Sbjct: 10716168 gcgcagatcacctgggagggcctgtggatgaactgcgtggtgcagagcacgggccagatg 10716109
Query: 308 cagtgcaaggtgtacgactcggtgctggcgctg 340
|||||||| ||||||||||| |||||||||||
Sbjct: 10716108 cagtgcaaagtgtacgactctctgctggcgctg 10716076
>Sscrofa_Chr13
|| Length = 218635234
Score = 63.9 bits (32), Expect = 2e-07
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 264 aggggctgtggatgtcctgcgtggtgcagagcacggggcatatgcagtgcaa 315
||||||||||||||||||||||| ||||||||| ||||| || ||||||||
Sbjct: 136987077 aggggctgtggatgtcctgcgtgtcgcagagcaccgggcagatccagtgcaa 136987026
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,468,545
Number of extensions: 167
Number of successful extensions: 167
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 6
Length of query: 1392
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1371
Effective length of database: 2,808,413,156
Effective search space: 3850334436876
Effective search space used: 3850334436876
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)