Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001677
(1104 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777109.1| ATP synthase subunit alpha, mitochondrial precu... 632 0.0
Alignment gi|NP_786990.1| ATP synthase subunit beta, mitochondrial precur... 90 3e-18
Alignment gi|NP_788844.2| V-type proton ATPase subunit B, brain isoform i... 69 7e-12
Alignment gi|NP_001001146.1| V-type proton ATPase subunit B, brain isofor... 69 7e-12
Alignment gi|NP_788827.1| V-type proton ATPase subunit B, kidney isoform ... 64 2e-10
Alignment gi|NP_776929.1| V-type proton ATPase catalytic subunit A [Bos t... 58 1e-08
>ref|NP_777109.1| ATP synthase subunit alpha, mitochondrial precursor [Bos taurus].
Length = 553
Score = 632 bits (1629), Expect = 0.0
Identities = 329/348 (94%), Positives = 332/348 (95%)
Frame = +1
Query: 61 MLSVXXXXXXXXXXXXXXGLVSKNALGSSFVAARNLHASNTRLQKTGTAEVSSILEERIL 240
MLSV GLVSKNALGSSF+AARNLHASN+RLQKTGTAEVSSILEERIL
Sbjct: 1 MLSVRVAAAVARALPRRAGLVSKNALGSSFIAARNLHASNSRLQKTGTAEVSSILEERIL 60
Query: 241 GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG 420
GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG
Sbjct: 61 GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG 120
Query: 421 NDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGII 600
NDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSK RRRVGLKAPGII
Sbjct: 121 NDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGII 180
Query: 601 PRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKK 780
PRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKK
Sbjct: 181 PRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKK 240
Query: 781 KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF 960
KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF
Sbjct: 241 KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF 300
Query: 961 RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFHLPSRL 1104
RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVF+L SRL
Sbjct: 301 RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 348
>ref|NP_786990.1| ATP synthase subunit beta, mitochondrial precursor [Bos taurus].
Length = 528
Score = 90.1 bits (222), Expect = 3e-18
Identities = 61/229 (26%), Positives = 110/229 (48%), Gaps = 7/229 (3%)
Frame = +1
Query: 406 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLK 585
+ + G + L++ G V +GA + +PVG E LGR+++ +G ID +GPI +K + +
Sbjct: 111 IAMDGTEGLVR-GQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAE 169
Query: 586 APGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDG 765
AP + +E + TGIK VD L P +G + + G GKT + ++ I N + + G
Sbjct: 170 APEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 229
Query: 766 TDEKKKLYCIYVAIGQKRSTVAQLVKRLTDA------DAMKYTIVVSATASDAAPLQYLA 927
Y ++ +G++ L + ++ DA +V ++ +
Sbjct: 230 -------YSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARV 282
Query: 928 PYSGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAY 1071
+G ++ EYFRD G+ L+ D++ + A ++S LL R P Y
Sbjct: 283 ALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGY 331
>ref|NP_788844.2| V-type proton ATPase subunit B, brain isoform isoform 2 [Bos taurus].
Length = 511
Score = 68.9 bits (167), Expect = 7e-12
Identities = 62/217 (28%), Positives = 95/217 (43%), Gaps = 8/217 (3%)
Frame = +1
Query: 460 TGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGIIP--RISVREPMQT 633
TG I+ PV E++LGRV + G ID +GP+ + + I P RI E +QT
Sbjct: 115 TGDILRTPVSEDMLGRVFNGSGKPID-RGPV-VLAEDFLDIMGQPINPQCRIYPEEMIQT 172
Query: 634 GIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQ----KRFNDGTDEKKKLYCI-Y 798
GI A+D + I RGQ+ I IA I Q K+ D D ++ + I +
Sbjct: 173 GISAIDGMNSIARGQKIPIFSAAGLPHNEIAAQ-ICRQAGLVKKSKDVVDYSEENFAIVF 231
Query: 799 VAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDN-GK 975
A+G T + +M + A+D + + P + E+ K
Sbjct: 232 AAMGVNMETARFFKSDFEENGSMDNVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEK 291
Query: 976 HALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVF 1086
H L+I D+S A A R++S PGR +PG ++
Sbjct: 292 HVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMY 328
>ref|NP_001001146.1| V-type proton ATPase subunit B, brain isoform isoform 1 [Bos taurus].
Length = 510
Score = 68.9 bits (167), Expect = 7e-12
Identities = 62/217 (28%), Positives = 95/217 (43%), Gaps = 8/217 (3%)
Frame = +1
Query: 460 TGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGIIP--RISVREPMQT 633
TG I+ PV E++LGRV + G ID +GP+ + + I P RI E +QT
Sbjct: 114 TGDILRTPVSEDMLGRVFNGSGKPID-RGPV-VLAEDFLDIMGQPINPHFRIYPEEMIQT 171
Query: 634 GIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQ----KRFNDGTDEKKKLYCI-Y 798
GI A+D + I RGQ+ I IA I Q K+ D D ++ + I +
Sbjct: 172 GISAIDGMNSIARGQKIPIFSAAGLPHNEIAAQ-ICRQAGLVKKSKDVVDYSEENFAIVF 230
Query: 799 VAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDN-GK 975
A+G T + +M + A+D + + P + E+ K
Sbjct: 231 AAMGVNMETARFFKSDFEENGSMDNVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEK 290
Query: 976 HALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVF 1086
H L+I D+S A A R++S PGR +PG ++
Sbjct: 291 HVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMY 327
>ref|NP_788827.1| V-type proton ATPase subunit B, kidney isoform [Bos taurus].
Length = 513
Score = 63.9 bits (154), Expect = 2e-10
Identities = 70/283 (24%), Positives = 113/283 (39%), Gaps = 14/283 (4%)
Frame = +1
Query: 280 VLSIGDGIARVHGLRNVQAEEMVEFS----SGLKGMSLNLEPDNVGVVVF-GNDKLIKEG 444
V S+ + + ++ Q E+V F+ + G L + V VF G + +
Sbjct: 44 VCSVNGPLVVLDQVKFAQYAEIVNFTLPNGTQRSGQVLEVSGTKAIVQVFEGTSGIDAQK 103
Query: 445 DIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGIIP--RISVR 618
+ TG I+ PV E++LGRV + G ID KGP+ + + I P RI
Sbjct: 104 TTCEFTGDILRTPVSEDMLGRVFNGSGKPID-KGPV-VMAEDFLDINGQPINPHDRIYPE 161
Query: 619 EPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDT------IINQKRFNDGTDEKK 780
E ++TGI +D + I RGQ+ I IA + K D D+
Sbjct: 162 EMIETGISPIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKKSKAVLDYHDDNF 221
Query: 781 KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF 960
+ ++ A+G T M + A+D + + P + E+
Sbjct: 222 AI--VFAAMGVNMETARFFKSDFEQNGTMGNVCLFLNLANDPTIERIITPRLALTTAEFL 279
Query: 961 RDN-GKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVF 1086
KH L+I D+S A A R++S PGR +PG ++
Sbjct: 280 AYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMY 322
>ref|NP_776929.1| V-type proton ATPase catalytic subunit A [Bos taurus].
Length = 618
Score = 58.2 bits (139), Expect = 1e-08
Identities = 42/169 (24%), Positives = 77/169 (45%), Gaps = 9/169 (5%)
Frame = +1
Query: 595 IIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDE 774
+ ++ P+ TG + +D+L P +G I G GKT +I+Q +
Sbjct: 218 VTEKLPANHPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKT------VISQSLSKYSNSD 271
Query: 775 KKKLYCIYVAIGQKRSTVAQLVKRLTDA---------DAMKYTIVVSATASDAAPLQYLA 927
IYV G++ + ++++++ + MK T +V+ T++ + +
Sbjct: 272 ----VIIYVGCGERGNEMSEVLRDFPELTMEVDGKVESIMKRTALVANTSNMPVAAREAS 327
Query: 928 PYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYP 1074
Y+G ++ EYFRD G H ++ D S+ A A R++S L P YP
Sbjct: 328 IYTGITLSEYFRDMGYHVSMMADSTSRWAEALREISGRLAEMPADSGYP 376
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,255,939
Number of extensions: 1149156
Number of successful extensions: 4088
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4062
Number of HSP's successfully gapped: 6
Length of query: 368
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 264
Effective length of database: 14,240,222
Effective search space: 3759418608
Effective search space used: 3759418608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001677
(1104 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854346.1| PREDICTED: similar to ATP synthase alpha chain,... 365 e-101
Alignment gi|XP_537273.2| PREDICTED: similar to ATP synthase alpha chain,... 255 6e-68
Alignment gi|XP_852877.1| PREDICTED: similar to ATP synthase alpha chain,... 235 6e-62
Alignment gi|XP_866456.1| PREDICTED: similar to ATP synthase alpha chain,... 188 7e-48
Alignment gi|XP_853593.1| PREDICTED: similar to ATP synthase alpha chain,... 184 1e-46
Alignment gi|XP_849711.1| PREDICTED: similar to ATP synthase alpha chain,... 154 2e-37
Alignment gi|XP_853608.1| PREDICTED: similar to ATP synthase alpha chain,... 134 2e-31
Alignment gi|XP_531639.2| PREDICTED: similar to ATP synthase beta chain, ... 91 3e-18
Alignment gi|XP_857891.1| PREDICTED: similar to ATP synthase beta chain, ... 90 3e-18
Alignment gi|XP_857932.1| PREDICTED: similar to ATP synthase beta chain, ... 73 6e-13
>ref|XP_854346.1| PREDICTED: similar to ATP synthase alpha chain, mitochondrial
precursor [Canis familiaris].
Length = 301
Score = 365 bits (938), Expect = e-101
Identities = 196/244 (80%), Positives = 200/244 (81%)
Frame = +1
Query: 373 MSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPI 552
MSLNL PD VGVVVFGNDKLIKEGDIVKRT A VDVPVG+EL G VVDALGNA DGKGPI
Sbjct: 1 MSLNLGPDKVGVVVFGNDKLIKEGDIVKRTEATVDVPVGKELPGHVVDALGNATDGKGPI 60
Query: 553 GSKTRRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAID 732
GSKT RRVGLK PGIIP ISVREPM+TGIKAVDSLVPIGRGQ ELII + QTGKTSIAID
Sbjct: 61 GSKTHRRVGLKGPGIIPPISVREPMKTGIKAVDSLVPIGRGQHELIISNWQTGKTSIAID 120
Query: 733 TIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAP 912
TIINQK NDGTDEKKKLYCIYV IGQKRSTVAQL KRLTDADAMKYTIV
Sbjct: 121 TIINQKHLNDGTDEKKKLYCIYVVIGQKRSTVAQLAKRLTDADAMKYTIV---------- 170
Query: 913 LQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFHL 1092
GEYFRDN KHALIIYDDLSKQAVAYRQMSLLL R PGREAYP DVF+L
Sbjct: 171 ------------GEYFRDNSKHALIIYDDLSKQAVAYRQMSLLLLRAPGREAYPDDVFYL 218
Query: 1093 PSRL 1104
SRL
Sbjct: 219 HSRL 222
>ref|XP_537273.2| PREDICTED: similar to ATP synthase alpha chain, mitochondrial
precursor isoform 1 [Canis familiaris].
Length = 438
Score = 255 bits (651), Expect = 6e-68
Identities = 136/154 (88%), Positives = 139/154 (90%)
Frame = +1
Query: 61 MLSVXXXXXXXXXXXXXXGLVSKNALGSSFVAARNLHASNTRLQKTGTAEVSSILEERIL 240
MLSV GLVSKNALGSSF+AARNLHASNT LQKTGTAEVSSILEERIL
Sbjct: 1 MLSVRVAAAVARALPRRAGLVSKNALGSSFIAARNLHASNTCLQKTGTAEVSSILEERIL 60
Query: 241 GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG 420
GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG
Sbjct: 61 GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG 120
Query: 421 NDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDAL 522
NDKLIKEGDIVKRTGAIVDVPVGEELLGRV+DA+
Sbjct: 121 NDKLIKEGDIVKRTGAIVDVPVGEELLGRVLDAM 154
Score = 164 bits (416), Expect = 1e-40
Identities = 88/121 (72%), Positives = 97/121 (80%)
Frame = +1
Query: 742 NQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQY 921
N K +G K+ + V +G+ +L+ R+ DA MKYTIVVSATASDAAPLQY
Sbjct: 121 NDKLIKEGDIVKRTGAIVDVPVGE------ELLGRVLDA--MKYTIVVSATASDAAPLQY 172
Query: 922 LAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFHLPSR 1101
LAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVF+L SR
Sbjct: 173 LAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSR 232
Query: 1102 L 1104
L
Sbjct: 233 L 233
>ref|XP_852877.1| PREDICTED: similar to ATP synthase alpha chain, mitochondrial
precursor isoform 2 [Canis familiaris].
Length = 436
Score = 235 bits (599), Expect = 6e-62
Identities = 129/153 (84%), Positives = 132/153 (86%)
Frame = +1
Query: 61 MLSVXXXXXXXXXXXXXXGLVSKNALGSSFVAARNLHASNTRLQKTGTAEVSSILEERIL 240
MLSV GLVSKNALGSSF+AARNLHASNT LQKTGTAEVSSILEERIL
Sbjct: 1 MLSVRVAAAVARALPRRAGLVSKNALGSSFIAARNLHASNTCLQKTGTAEVSSILEERIL 60
Query: 241 GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG 420
GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG
Sbjct: 61 GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG 120
Query: 421 NDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDA 519
NDKLIKEGDIVKRTGAIVDVP L+ R+ DA
Sbjct: 121 NDKLIKEGDIVKRTGAIVDVP----LVKRLTDA 149
Score = 177 bits (449), Expect = 2e-44
Identities = 88/90 (97%), Positives = 89/90 (98%)
Frame = +1
Query: 835 LVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQA 1014
LVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQA
Sbjct: 142 LVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQA 201
Query: 1015 VAYRQMSLLLRRPPGREAYPGDVFHLPSRL 1104
VAYRQMSLLLRRPPGREAYPGDVF+L SRL
Sbjct: 202 VAYRQMSLLLRRPPGREAYPGDVFYLHSRL 231
>ref|XP_866456.1| PREDICTED: similar to ATP synthase alpha chain, mitochondrial
precursor isoform 3 [Canis familiaris].
Length = 121
Score = 188 bits (478), Expect = 7e-48
Identities = 102/118 (86%), Positives = 103/118 (87%)
Frame = +1
Query: 61 MLSVXXXXXXXXXXXXXXGLVSKNALGSSFVAARNLHASNTRLQKTGTAEVSSILEERIL 240
MLSV GLVSKNALGSSF+AARNLHASNT LQKTGTAEVSSILEERIL
Sbjct: 1 MLSVRVAAAVARALPRRAGLVSKNALGSSFIAARNLHASNTCLQKTGTAEVSSILEERIL 60
Query: 241 GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVV 414
GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVV
Sbjct: 61 GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVV 118
>ref|XP_853593.1| PREDICTED: similar to ATP synthase alpha chain, mitochondrial
precursor [Canis familiaris].
Length = 124
Score = 184 bits (468), Expect = 1e-46
Identities = 98/113 (86%), Positives = 103/113 (91%)
Frame = +1
Query: 115 GLVSKNALGSSFVAARNLHASNTRLQKTGTAEVSSILEERILGADTSVDLEETGRVLSIG 294
GLVSKNALGSSF+AARNLHAS TRLQKT TAEV S LEE ILGADTSVDLEETG VLSIG
Sbjct: 12 GLVSKNALGSSFIAARNLHASTTRLQKTSTAEVFSTLEECILGADTSVDLEETGCVLSIG 71
Query: 295 DGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDIV 453
D IA VHGLRNV+AEEMVE SSGLKGMSLNLEPDN+GVV+FGNDKLIKEG I+
Sbjct: 72 DDIACVHGLRNVKAEEMVESSSGLKGMSLNLEPDNIGVVMFGNDKLIKEGYIM 124
>ref|XP_849711.1| PREDICTED: similar to ATP synthase alpha chain, mitochondrial
precursor [Canis familiaris].
Length = 285
Score = 154 bits (388), Expect = 2e-37
Identities = 76/80 (95%), Positives = 77/80 (96%)
Frame = +1
Query: 865 MKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLL 1044
MKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNG HALIIYDDLSKQAVAYRQMSLLL
Sbjct: 1 MKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGTHALIIYDDLSKQAVAYRQMSLLL 60
Query: 1045 RRPPGREAYPGDVFHLPSRL 1104
RPPGREAYPGDVF+L SRL
Sbjct: 61 CRPPGREAYPGDVFYLHSRL 80
>ref|XP_853608.1| PREDICTED: similar to ATP synthase alpha chain, mitochondrial
precursor [Canis familiaris].
Length = 205
Score = 134 bits (337), Expect = 2e-31
Identities = 67/80 (83%), Positives = 72/80 (90%)
Frame = +1
Query: 865 MKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLL 1044
MK+TIVVSATASDAAPL+ L PYSG GEYFRD+GKHALIIYDDLS+QAVAYR MSLLL
Sbjct: 1 MKFTIVVSATASDAAPLRCLTPYSGGGGGEYFRDHGKHALIIYDDLSRQAVAYRWMSLLL 60
Query: 1045 RRPPGREAYPGDVFHLPSRL 1104
RRPPGREAYPGDVF+L S L
Sbjct: 61 RRPPGREAYPGDVFYLHSHL 80
>ref|XP_531639.2| PREDICTED: similar to ATP synthase beta chain, mitochondrial
precursor isoform 1 [Canis familiaris].
Length = 527
Score = 90.5 bits (223), Expect = 3e-18
Identities = 61/229 (26%), Positives = 110/229 (48%), Gaps = 7/229 (3%)
Frame = +1
Query: 406 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLK 585
+ + G + L++ G V +GA + +PVG E LGR+++ +G ID +GPI +K + +
Sbjct: 110 IAMDGTEGLVR-GQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAE 168
Query: 586 APGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDG 765
AP + +E + TGIK VD L P +G + + G GKT + ++ I N + + G
Sbjct: 169 APEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 228
Query: 766 TDEKKKLYCIYVAIGQKRSTVAQLVKRLTDA------DAMKYTIVVSATASDAAPLQYLA 927
Y ++ +G++ L + ++ DA +V ++ +
Sbjct: 229 -------YSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARV 281
Query: 928 PYSGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAY 1071
+G ++ EYFRD G+ L+ D++ + A ++S LL R P Y
Sbjct: 282 ALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGY 330
>ref|XP_857891.1| PREDICTED: similar to ATP synthase beta chain, mitochondrial
precursor isoform 3 [Canis familiaris].
Length = 527
Score = 90.1 bits (222), Expect = 3e-18
Identities = 61/229 (26%), Positives = 110/229 (48%), Gaps = 7/229 (3%)
Frame = +1
Query: 406 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLK 585
+ + G + L++ G V +GA + +PVG E LGR+++ +G ID +GPI +K + +
Sbjct: 110 IAMDGTEGLVR-GQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQLWAIHAE 168
Query: 586 APGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDG 765
AP + +E + TGIK VD L P +G + + G GKT + ++ I N + + G
Sbjct: 169 APEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 228
Query: 766 TDEKKKLYCIYVAIGQKRSTVAQLVKRLTDA------DAMKYTIVVSATASDAAPLQYLA 927
Y ++ +G++ L + ++ DA +V ++ +
Sbjct: 229 -------YSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVTLVYGQMNEPPGARARV 281
Query: 928 PYSGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAY 1071
+G ++ EYFRD G+ L+ D++ + A ++S LL R P Y
Sbjct: 282 ALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGY 330
>ref|XP_857932.1| PREDICTED: similar to ATP synthase beta chain, mitochondrial
precursor isoform 4 [Canis familiaris].
Length = 474
Score = 72.8 bits (177), Expect = 6e-13
Identities = 41/137 (29%), Positives = 73/137 (53%)
Frame = +1
Query: 406 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLK 585
+ + G + L++ G V +GA + +PVG E LGR+++ +G ID +GPI +K + +
Sbjct: 110 IAMDGTEGLVR-GQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAE 168
Query: 586 APGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDG 765
AP + +E + TGIK VD L P +G + + G GKT + ++ I N + + G
Sbjct: 169 APEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 228
Query: 766 TDEKKKLYCIYVAIGQK 816
Y ++ +G++
Sbjct: 229 -------YSVFAGVGER 238
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,069,587
Number of extensions: 1186236
Number of successful extensions: 4484
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 4464
Number of HSP's successfully gapped: 18
Length of query: 368
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 264
Effective length of database: 15,407,560
Effective search space: 4067595840
Effective search space used: 4067595840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001677
(1104 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001001937.1| ATP synthase subunit alpha, mitochondrial pr... 628 e-180
Alignment gi|NP_004037.1| ATP synthase subunit alpha, mitochondrial precu... 628 e-180
Alignment gi|NP_001677.2| ATP synthase subunit beta, mitochondrial precur... 89 6e-18
Alignment gi|NP_001684.2| V-type proton ATPase subunit B, brain isoform [... 69 8e-12
Alignment gi|NP_001683.2| V-type proton ATPase subunit B, kidney isoform ... 64 2e-10
Alignment gi|NP_001681.2| V-type proton ATPase catalytic subunit A [Homo ... 58 1e-08
>ref|NP_001001937.1| ATP synthase subunit alpha, mitochondrial precursor [Homo sapiens].
Length = 553
Score = 628 bits (1619), Expect = e-180
Identities = 326/348 (93%), Positives = 331/348 (95%)
Frame = +1
Query: 61 MLSVXXXXXXXXXXXXXXGLVSKNALGSSFVAARNLHASNTRLQKTGTAEVSSILEERIL 240
MLSV GLVS+NALGSSF+AARN HASNT LQKTGTAE+SSILEERIL
Sbjct: 1 MLSVRVAAAVVRALPRRAGLVSRNALGSSFIAARNFHASNTHLQKTGTAEMSSILEERIL 60
Query: 241 GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG 420
GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG
Sbjct: 61 GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG 120
Query: 421 NDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGII 600
NDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGII
Sbjct: 121 NDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGII 180
Query: 601 PRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKK 780
PRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDG+DEKK
Sbjct: 181 PRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGSDEKK 240
Query: 781 KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF 960
KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF
Sbjct: 241 KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF 300
Query: 961 RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFHLPSRL 1104
RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVF+L SRL
Sbjct: 301 RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 348
>ref|NP_004037.1| ATP synthase subunit alpha, mitochondrial precursor [Homo sapiens].
Length = 553
Score = 628 bits (1619), Expect = e-180
Identities = 326/348 (93%), Positives = 331/348 (95%)
Frame = +1
Query: 61 MLSVXXXXXXXXXXXXXXGLVSKNALGSSFVAARNLHASNTRLQKTGTAEVSSILEERIL 240
MLSV GLVS+NALGSSF+AARN HASNT LQKTGTAE+SSILEERIL
Sbjct: 1 MLSVRVAAAVVRALPRRAGLVSRNALGSSFIAARNFHASNTHLQKTGTAEMSSILEERIL 60
Query: 241 GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG 420
GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG
Sbjct: 61 GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG 120
Query: 421 NDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGII 600
NDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGII
Sbjct: 121 NDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGII 180
Query: 601 PRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKK 780
PRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDG+DEKK
Sbjct: 181 PRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGSDEKK 240
Query: 781 KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF 960
KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF
Sbjct: 241 KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF 300
Query: 961 RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFHLPSRL 1104
RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVF+L SRL
Sbjct: 301 RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 348
>ref|NP_001677.2| ATP synthase subunit beta, mitochondrial precursor [Homo sapiens].
Length = 529
Score = 89.4 bits (220), Expect = 6e-18
Identities = 61/229 (26%), Positives = 110/229 (48%), Gaps = 7/229 (3%)
Frame = +1
Query: 406 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLK 585
+ + G + L++ G V +GA + +PVG E LGR+++ +G ID +GPI +K + +
Sbjct: 111 IAMDGTEGLVR-GQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAE 169
Query: 586 APGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDG 765
AP + +E + TGIK VD L P +G + + G GKT + ++ I N + + G
Sbjct: 170 APEFMEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 229
Query: 766 TDEKKKLYCIYVAIGQKRSTVAQLVKRLTDA------DAMKYTIVVSATASDAAPLQYLA 927
Y ++ +G++ L + ++ DA +V ++ +
Sbjct: 230 -------YSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARV 282
Query: 928 PYSGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAY 1071
+G ++ EYFRD G+ L+ D++ + A ++S LL R P Y
Sbjct: 283 ALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGY 331
>ref|NP_001684.2| V-type proton ATPase subunit B, brain isoform [Homo sapiens].
Length = 511
Score = 68.9 bits (167), Expect = 8e-12
Identities = 62/217 (28%), Positives = 95/217 (43%), Gaps = 8/217 (3%)
Frame = +1
Query: 460 TGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGIIP--RISVREPMQT 633
TG I+ PV E++LGRV + G ID +GP+ + + I P RI E +QT
Sbjct: 115 TGDILRTPVSEDMLGRVFNGSGKPID-RGPV-VLAEDFLDIMGQPINPQCRIYPEEMIQT 172
Query: 634 GIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQ----KRFNDGTDEKKKLYCI-Y 798
GI A+D + I RGQ+ I IA I Q K+ D D ++ + I +
Sbjct: 173 GISAIDGMNSIARGQKIPIFSAAGLPHNEIAAQ-ICRQAGLVKKSKDVVDYSEENFAIVF 231
Query: 799 VAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDN-GK 975
A+G T + +M + A+D + + P + E+ K
Sbjct: 232 AAMGVNMETARFFKSDFEENGSMDNVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEK 291
Query: 976 HALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVF 1086
H L+I D+S A A R++S PGR +PG ++
Sbjct: 292 HVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMY 328
>ref|NP_001683.2| V-type proton ATPase subunit B, kidney isoform [Homo sapiens].
Length = 513
Score = 63.9 bits (154), Expect = 2e-10
Identities = 71/283 (25%), Positives = 112/283 (39%), Gaps = 14/283 (4%)
Frame = +1
Query: 280 VLSIGDGIARVHGLRNVQAEEMVEFS----SGLKGMSLNLEPDNVGVVVF-GNDKLIKEG 444
V S+ + + ++ Q E+V F+ + G L + V VF G +
Sbjct: 44 VCSVNGPLVVLDRVKFAQYAEIVHFTLPDGTQRSGQVLEVAGTKAIVQVFEGTSGIDARK 103
Query: 445 DIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGIIP--RISVR 618
+ TG I+ PV E++LGRV + G ID KGP+ + + I P RI
Sbjct: 104 TTCEFTGDILRTPVSEDMLGRVFNGSGKPID-KGPV-VMAEDFLDINGQPINPHSRIYPE 161
Query: 619 EPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDT------IINQKRFNDGTDEKK 780
E +QTGI +D + I RGQ+ I IA + K D D+
Sbjct: 162 EMIQTGISPIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKKSKAVLDYHDDNF 221
Query: 781 KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF 960
+ ++ A+G T M + A+D + + P + E+
Sbjct: 222 AI--VFAAMGVNMETARFFKSDFEQNGTMGNVCLFLNLANDPTIERIITPRLALTTAEFL 279
Query: 961 RDN-GKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVF 1086
KH L+I D+S A A R++S PGR +PG ++
Sbjct: 280 AYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMY 322
>ref|NP_001681.2| V-type proton ATPase catalytic subunit A [Homo sapiens].
Length = 617
Score = 58.2 bits (139), Expect = 1e-08
Identities = 42/169 (24%), Positives = 77/169 (45%), Gaps = 9/169 (5%)
Frame = +1
Query: 595 IIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDE 774
+ ++ P+ TG + +D+L P +G I G GKT +I+Q +
Sbjct: 217 VTEKLPANHPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKT------VISQSLSKYSNSD 270
Query: 775 KKKLYCIYVAIGQKRSTVAQLVKRLTDA---------DAMKYTIVVSATASDAAPLQYLA 927
IYV G++ + ++++++ + MK T +V+ T++ + +
Sbjct: 271 ----VIIYVGCGERGNEMSEVLRDFPELTMEVDGKVESIMKRTALVANTSNMPVAAREAS 326
Query: 928 PYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYP 1074
Y+G ++ EYFRD G H ++ D S+ A A R++S L P YP
Sbjct: 327 IYTGITLSEYFRDMGYHVSMMADSTSRWAEALREISGRLAEMPADSGYP 375
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,382,710
Number of extensions: 1177133
Number of successful extensions: 4354
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4304
Number of HSP's successfully gapped: 6
Length of query: 368
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 264
Effective length of database: 14,868,908
Effective search space: 3925391712
Effective search space used: 3925391712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001677
(1104 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031531.1| ATP synthase subunit alpha, mitochondrial precu... 632 0.0
Alignment gi|NP_058054.2| ATP synthase subunit beta, mitochondrial precur... 92 9e-19
Alignment gi|NP_031535.2| V-type proton ATPase subunit B, brain isoform [... 69 7e-12
Alignment gi|NP_598918.1| V-type proton ATPase subunit B, kidney isoform ... 63 5e-10
Alignment gi|NP_031534.2| V-type proton ATPase catalytic subunit A [Mus m... 58 1e-08
>ref|NP_031531.1| ATP synthase subunit alpha, mitochondrial precursor [Mus musculus].
Length = 553
Score = 632 bits (1631), Expect = 0.0
Identities = 329/348 (94%), Positives = 332/348 (95%)
Frame = +1
Query: 61 MLSVXXXXXXXXXXXXXXGLVSKNALGSSFVAARNLHASNTRLQKTGTAEVSSILEERIL 240
MLSV GLVSKNALGSSFV ARNLHASNTRLQKTGTAE+SSILEERIL
Sbjct: 1 MLSVRVAAAVARALPRRAGLVSKNALGSSFVGARNLHASNTRLQKTGTAEMSSILEERIL 60
Query: 241 GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG 420
GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG
Sbjct: 61 GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG 120
Query: 421 NDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGII 600
NDKLIKEGD+VKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGII
Sbjct: 121 NDKLIKEGDVVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGII 180
Query: 601 PRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKK 780
PRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKK
Sbjct: 181 PRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKK 240
Query: 781 KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF 960
KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF
Sbjct: 241 KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF 300
Query: 961 RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFHLPSRL 1104
RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVF+L SRL
Sbjct: 301 RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 348
>ref|NP_058054.2| ATP synthase subunit beta, mitochondrial precursor [Mus musculus].
Length = 529
Score = 91.7 bits (226), Expect = 9e-19
Identities = 77/312 (24%), Positives = 136/312 (43%), Gaps = 7/312 (2%)
Frame = +1
Query: 157 ARNLHASNTRLQKTGTAEVSSILEERILGADTSVDLEETGRVLSIGDGIARVHGLRNVQA 336
AR+ A + K GTA + ++GA V +E G+ + VQ
Sbjct: 43 ARDYAAQASAAPKAGTATGRIVA---VIGAVVDVQFDE---------GLPPILNALEVQG 90
Query: 337 EEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVD 516
+ S + ++ +L V + + + G V +GA + +PVG E LGR+++
Sbjct: 91 RD----SRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMN 146
Query: 517 ALGNAIDGKGPIGSKTRRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIG 696
+G ID +GPI +K + +AP I +E + TGIK VD L P +G + + G
Sbjct: 147 VIGEPIDERGPIKTKQFAPIHAEAPEFIEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFG 206
Query: 697 DRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDA------ 858
GKT + ++ I N + + G Y ++ +G++ L + ++
Sbjct: 207 GAGVGKTVLIMELINNVAKAHGG-------YSVFAGVGERTREGNDLYHEMIESGVINLK 259
Query: 859 DAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMS 1035
DA +V ++ + +G ++ EYFRD G+ L+ D++ + A ++S
Sbjct: 260 DATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVS 319
Query: 1036 LLLRRPPGREAY 1071
LL R P Y
Sbjct: 320 ALLGRIPSAVGY 331
>ref|NP_031535.2| V-type proton ATPase subunit B, brain isoform [Mus musculus].
Length = 511
Score = 68.9 bits (167), Expect = 7e-12
Identities = 62/217 (28%), Positives = 95/217 (43%), Gaps = 8/217 (3%)
Frame = +1
Query: 460 TGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGIIP--RISVREPMQT 633
TG I+ PV E++LGRV + G ID +GP+ + + I P RI E +QT
Sbjct: 115 TGDILRTPVSEDMLGRVFNGSGKPID-RGPV-VLAEDFLDIMGQPINPQCRIYPEEMIQT 172
Query: 634 GIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQ----KRFNDGTDEKKKLYCI-Y 798
GI A+D + I RGQ+ I IA I Q K+ D D ++ + I +
Sbjct: 173 GISAIDGMNSIARGQKIPIFSAAGLPHNEIAAQ-ICRQAGLVKKSKDVVDYSEENFAIVF 231
Query: 799 VAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDN-GK 975
A+G T + +M + A+D + + P + E+ K
Sbjct: 232 AAMGVNMETARFFKSDFEENGSMDNVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEK 291
Query: 976 HALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVF 1086
H L+I D+S A A R++S PGR +PG ++
Sbjct: 292 HVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMY 328
>ref|NP_598918.1| V-type proton ATPase subunit B, kidney isoform [Mus musculus].
Length = 513
Score = 62.8 bits (151), Expect = 5e-10
Identities = 69/283 (24%), Positives = 112/283 (39%), Gaps = 14/283 (4%)
Frame = +1
Query: 280 VLSIGDGIARVHGLRNVQAEEMVEFS----SGLKGMSLNLEPDNVGVVVF-GNDKLIKEG 444
V S+ + + ++ Q E+V F+ + G L + V VF G + +
Sbjct: 44 VCSVNGPLVVLDQVKFAQYAEIVNFTLPDGTQRSGQVLEVAGTKAIVQVFEGTSGIDSQK 103
Query: 445 DIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGIIP--RISVR 618
+ TG I+ PV E++LGR+ + G ID KGP + + I P RI
Sbjct: 104 TTCEFTGDILRTPVSEDMLGRIFNGSGKPID-KGP-AVMAEEFLDINGQPINPHDRIYPE 161
Query: 619 EPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDT------IINQKRFNDGTDEKK 780
E +QTGI +D + I RGQ+ I IA + K D ++
Sbjct: 162 EMIQTGISPIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKKSKAVLDYHEDNF 221
Query: 781 KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF 960
+ ++ A+G T M + A+D + + P + E+
Sbjct: 222 AI--VFAAMGVNMETARFFKSDFEQNGTMGNVCLFLNLANDPTIERIITPRLALTTAEFL 279
Query: 961 RDN-GKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVF 1086
KH L+I D+S A A R++S PGR +PG ++
Sbjct: 280 AYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMY 322
>ref|NP_031534.2| V-type proton ATPase catalytic subunit A [Mus musculus].
Length = 617
Score = 58.2 bits (139), Expect = 1e-08
Identities = 42/169 (24%), Positives = 77/169 (45%), Gaps = 9/169 (5%)
Frame = +1
Query: 595 IIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDE 774
+ ++ P+ TG + +D+L P +G I G GKT +I+Q +
Sbjct: 217 VTEKLPANHPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKT------VISQSLSKYSNSD 270
Query: 775 KKKLYCIYVAIGQKRSTVAQLVKRLTDA---------DAMKYTIVVSATASDAAPLQYLA 927
IYV G++ + ++++++ + MK T +V+ T++ + +
Sbjct: 271 ----VIIYVGCGERGNEMSEVLRDFPELTMEVDGKVESIMKRTALVANTSNMPVAAREAS 326
Query: 928 PYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYP 1074
Y+G ++ EYFRD G H ++ D S+ A A R++S L P YP
Sbjct: 327 IYTGITLSEYFRDMGYHVSMMADSTSRWAEALREISGRLAEMPADSGYP 375
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,836,362
Number of extensions: 992936
Number of successful extensions: 3472
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3447
Number of HSP's successfully gapped: 5
Length of query: 368
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 265
Effective length of database: 12,523,851
Effective search space: 3318820515
Effective search space used: 3318820515
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001677
(1104 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001172071.1| ATP synthase subunit alpha, mitochondrial [S... 635 0.0
Alignment gi|XP_003353355.1| PREDICTED: hypothetical protein LOC100623706... 158 6e-39
Alignment gi|XP_001929445.1| PREDICTED: ATP synthase subunit beta, mitoch... 90 3e-18
Alignment gi|XP_003132841.1| PREDICTED: v-type proton ATPase subunit B, b... 69 5e-12
Alignment gi|XP_003125089.2| PREDICTED: v-type proton ATPase subunit B, k... 63 3e-10
Alignment gi|NP_001004042.1| V-type proton ATPase catalytic subunit A [Su... 56 4e-08
>ref|NP_001172071.1| ATP synthase subunit alpha, mitochondrial [Sus scrofa].
Length = 553
Score = 635 bits (1639), Expect = 0.0
Identities = 332/348 (95%), Positives = 333/348 (95%)
Frame = +1
Query: 61 MLSVXXXXXXXXXXXXXXGLVSKNALGSSFVAARNLHASNTRLQKTGTAEVSSILEERIL 240
MLSV GLVSKNALGSSFVAARNLHASNTRLQKTGTAEVSSILEERIL
Sbjct: 1 MLSVRVAAAVARALPRRAGLVSKNALGSSFVAARNLHASNTRLQKTGTAEVSSILEERIL 60
Query: 241 GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG 420
GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG
Sbjct: 61 GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG 120
Query: 421 NDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGII 600
NDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGII
Sbjct: 121 NDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGII 180
Query: 601 PRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKK 780
PRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKK
Sbjct: 181 PRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKK 240
Query: 781 KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF 960
KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF
Sbjct: 241 KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF 300
Query: 961 RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFHLPSRL 1104
RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVF+L SRL
Sbjct: 301 RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 348
>ref|XP_003353355.1| PREDICTED: hypothetical protein LOC100623706 [Sus scrofa].
Length = 220
Score = 158 bits (399), Expect = 6e-39
Identities = 83/83 (100%), Positives = 83/83 (100%)
Frame = +1
Query: 121 VSKNALGSSFVAARNLHASNTRLQKTGTAEVSSILEERILGADTSVDLEETGRVLSIGDG 300
VSKNALGSSFVAARNLHASNTRLQKTGTAEVSSILEERILGADTSVDLEETGRVLSIGDG
Sbjct: 33 VSKNALGSSFVAARNLHASNTRLQKTGTAEVSSILEERILGADTSVDLEETGRVLSIGDG 92
Query: 301 IARVHGLRNVQAEEMVEFSSGLK 369
IARVHGLRNVQAEEMVEFSSGLK
Sbjct: 93 IARVHGLRNVQAEEMVEFSSGLK 115
>ref|XP_001929445.1| PREDICTED: ATP synthase subunit beta, mitochondrial [Sus scrofa].
Length = 528
Score = 89.7 bits (221), Expect = 3e-18
Identities = 61/229 (26%), Positives = 110/229 (48%), Gaps = 7/229 (3%)
Frame = +1
Query: 406 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLK 585
+ + G + L++ G V +GA + +PVG E LGR+++ +G ID +GPI +K + +
Sbjct: 111 IAMDGTEGLVR-GQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAE 169
Query: 586 APGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDG 765
AP + +E + TGIK VD L P +G + + G GKT + ++ I N + + G
Sbjct: 170 APEFMEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 229
Query: 766 TDEKKKLYCIYVAIGQKRSTVAQLVKRLTDA------DAMKYTIVVSATASDAAPLQYLA 927
Y ++ +G++ L + ++ DA +V ++ +
Sbjct: 230 -------YSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARV 282
Query: 928 PYSGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAY 1071
+G ++ EYFRD G+ L+ D++ + A ++S LL R P Y
Sbjct: 283 ALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGY 331
>ref|XP_003132841.1| PREDICTED: v-type proton ATPase subunit B, brain isoform-like [Sus
scrofa].
Length = 511
Score = 68.9 bits (167), Expect = 5e-12
Identities = 62/217 (28%), Positives = 95/217 (43%), Gaps = 8/217 (3%)
Frame = +1
Query: 460 TGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGIIP--RISVREPMQT 633
TG I+ PV E++LGRV + G ID +GP+ + + I P RI E +QT
Sbjct: 115 TGDILRTPVSEDMLGRVFNGSGKPID-RGPV-VLAEDFLDIMGQPINPQCRIYPEEMIQT 172
Query: 634 GIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQ----KRFNDGTDEKKKLYCI-Y 798
GI A+D + I RGQ+ I IA I Q K+ D D ++ + I +
Sbjct: 173 GISAIDGMNSIARGQKIPIFSAAGLPHNEIAAQ-ICRQAGLVKKSKDVVDYSEENFAIVF 231
Query: 799 VAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDN-GK 975
A+G T + +M + A+D + + P + E+ K
Sbjct: 232 AAMGVNMETARFFKSDFEENGSMDNVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEK 291
Query: 976 HALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVF 1086
H L+I D+S A A R++S PGR +PG ++
Sbjct: 292 HVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMY 328
>ref|XP_003125089.2| PREDICTED: v-type proton ATPase subunit B, kidney isoform-like [Sus
scrofa].
Length = 460
Score = 62.8 bits (151), Expect = 3e-10
Identities = 58/218 (26%), Positives = 89/218 (40%), Gaps = 9/218 (4%)
Frame = +1
Query: 460 TGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGIIP--RISVREPMQT 633
TG I+ PV E++LGRV + G ID GP+ + + I P RI E +QT
Sbjct: 54 TGDILRTPVSEDMLGRVFNGSGKPIDN-GPV-VMAEDFLDINGQPINPHDRIYPEEMIQT 111
Query: 634 GIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDT------IINQKRFNDGTDEKKKLYCI 795
GI +D + I RGQ+ I IA + K D D+ + +
Sbjct: 112 GISPIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKKSKAVLDYDDDNFAI--V 169
Query: 796 YVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDN-G 972
+ A+G T + M + A+D + + P + E+
Sbjct: 170 FAAMGVNMETARFFKSDFEENGTMGNVCLFLNLANDPTIERIITPRLALTTAEFLAYQCE 229
Query: 973 KHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVF 1086
KH L+I D+S A A R++S PGR +PG ++
Sbjct: 230 KHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMY 267
>ref|NP_001004042.1| V-type proton ATPase catalytic subunit A [Sus scrofa].
Length = 618
Score = 55.8 bits (133), Expect = 4e-08
Identities = 41/169 (24%), Positives = 77/169 (45%), Gaps = 9/169 (5%)
Frame = +1
Query: 595 IIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDE 774
+ ++ P+ TG + +D+L P +G I G GKT +I+Q +
Sbjct: 218 VTEKLPANHPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKT------VISQSLSKYSNSD 271
Query: 775 KKKLYCIYVAIGQKRSTVAQLVKRLTDA---------DAMKYTIVVSATASDAAPLQYLA 927
IYV G++ + ++++++ + MK T +V+ T++ + +
Sbjct: 272 ----VIIYVGCGERVNEMSEVLRDFPELTMEVDGKVESIMKRTALVANTSNMPVAAREAS 327
Query: 928 PYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYP 1074
Y+G ++ EYFRD G H ++ + S+ A A R++S L P YP
Sbjct: 328 IYTGITLSEYFRDMGYHVSMMANSTSRWAEALREISGRLAEMPADSGYP 376
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,183,505
Number of extensions: 732866
Number of successful extensions: 2550
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2542
Number of HSP's successfully gapped: 6
Length of query: 368
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 268
Effective length of database: 8,854,232
Effective search space: 2372934176
Effective search space used: 2372934176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001677
(1104 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 351 5e-94
Sscrofa_Chr09 94 2e-16
>Sscrofa_Chr01
|| Length = 315321322
Score = 351 bits (177), Expect = 5e-94
Identities = 177/177 (100%)
Strand = Plus / Plus
Query: 368 agggtatgtctctgaacttggaacctgacaatgttggtgttgtcgtgtttggaaatgata 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105950018 agggtatgtctctgaacttggaacctgacaatgttggtgttgtcgtgtttggaaatgata 105950077
Query: 428 agctaattaaggaaggagatattgtgaagagaactggggccatcgtggatgttccagttg 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105950078 agctaattaaggaaggagatattgtgaagagaactggggccatcgtggatgttccagttg 105950137
Query: 488 gtgaggagctgttgggtcgtgtagtagatgcccttggtaacgccattgatggaaagg 544
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105950138 gtgaggagctgttgggtcgtgtagtagatgcccttggtaacgccattgatggaaagg 105950194
Score = 341 bits (172), Expect = 5e-91
Identities = 172/172 (100%)
Strand = Plus / Plus
Query: 199 ggcactgctgaggtttcctctattcttgaagagcgaattcttggcgctgatacctctgtt 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105946206 ggcactgctgaggtttcctctattcttgaagagcgaattcttggcgctgatacctctgtt 105946265
Query: 259 gaccttgaagagaccgggcgtgttttaagtattggtgatggtattgcccgtgtacacggg 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105946266 gaccttgaagagaccgggcgtgttttaagtattggtgatggtattgcccgtgtacacggg 105946325
Query: 319 ctgagaaatgttcaggctgaagaaatggtagagttttcttcaggtttaaagg 370
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105946326 ctgagaaatgttcaggctgaagaaatggtagagttttcttcaggtttaaagg 105946377
Score = 341 bits (172), Expect = 5e-91
Identities = 172/172 (100%)
Strand = Plus / Plus
Query: 199 ggcactgctgaggtttcctctattcttgaagagcgaattcttggcgctgatacctctgtt 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105947102 ggcactgctgaggtttcctctattcttgaagagcgaattcttggcgctgatacctctgtt 105947161
Query: 259 gaccttgaagagaccgggcgtgttttaagtattggtgatggtattgcccgtgtacacggg 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105947162 gaccttgaagagaccgggcgtgttttaagtattggtgatggtattgcccgtgtacacggg 105947221
Query: 319 ctgagaaatgttcaggctgaagaaatggtagagttttcttcaggtttaaagg 370
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105947222 ctgagaaatgttcaggctgaagaaatggtagagttttcttcaggtttaaagg 105947273
Score = 335 bits (169), Expect = 3e-89
Identities = 169/169 (100%)
Strand = Plus / Plus
Query: 542 agggtccaattggttccaagacccgaaggcgagttggcctgaaagcccctgggatcattc 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105950280 agggtccaattggttccaagacccgaaggcgagttggcctgaaagcccctgggatcattc 105950339
Query: 602 ctcgaatctctgtgcgggaaccaatgcagactggcattaaggctgtggacagcctggtgc 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105950340 ctcgaatctctgtgcgggaaccaatgcagactggcattaaggctgtggacagcctggtgc 105950399
Query: 662 caattggtcgtggtcagcgtgagctgattattggcgaccgacagactgg 710
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105950400 caattggtcgtggtcagcgtgagctgattattggcgaccgacagactgg 105950448
Score = 307 bits (155), Expect = 7e-81
Identities = 155/155 (100%)
Strand = Plus / Plus
Query: 858 agatgccatgaagtacaccattgtggtttcagctactgcgtctgatgctgccccacttca 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105951340 agatgccatgaagtacaccattgtggtttcagctactgcgtctgatgctgccccacttca 105951399
Query: 918 gtacctggctccttattctggatgttctatgggagaatattttagggataatggcaaaca 977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105951400 gtacctggctccttattctggatgttctatgggagaatattttagggataatggcaaaca 105951459
Query: 978 tgctttgatcatctatgatgacttatccaaacagg 1012
|||||||||||||||||||||||||||||||||||
Sbjct: 105951460 tgctttgatcatctatgatgacttatccaaacagg 105951494
Score = 297 bits (150), Expect = 7e-78
Identities = 150/150 (100%)
Strand = Plus / Plus
Query: 710 gcaaaacgtcaattgctattgacacaatcattaaccagaaacgattcaatgatggaactg 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105950650 gcaaaacgtcaattgctattgacacaatcattaaccagaaacgattcaatgatggaactg 105950709
Query: 770 atgaaaagaaaaagctgtactgtatctatgttgctattggtcaaaagagatccactgttg 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105950710 atgaaaagaaaaagctgtactgtatctatgttgctattggtcaaaagagatccactgttg 105950769
Query: 830 cccagttggtgaagagacttacagatgcag 859
||||||||||||||||||||||||||||||
Sbjct: 105950770 cccagttggtgaagagacttacagatgcag 105950799
Score = 165 bits (83), Expect = 6e-38
Identities = 92/95 (96%)
Strand = Plus / Plus
Query: 1010 aggctgttgcttatcgtcagatgtctctgctgctccgccgaccccccggtcgtgaggcct 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105951607 aggctgttgcttatcgtcagatgtctctgctgctccgccgaccccccggtcgtgaggcct 105951666
Query: 1070 atcctggtgacgtgtttcacctaccctcccgtctg 1104
|||||||||||||||| |||||| ||||||||||
Sbjct: 105951667 atcctggtgacgtgttctacctacactcccgtctg 105951701
Score = 161 bits (81), Expect = 1e-36
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 120 ggtctccaaaaatgctttgggatcgtcctttgttgctgcaagaaacctccatgcctctaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105944305 ggtctccaaaaatgctttgggatcgtcctttgttgctgcaagaaacctccatgcctctaa 105944364
Query: 180 cactcgtcttcagaagactgg 200
|||||||||||||||||||||
Sbjct: 105944365 cactcgtcttcagaagactgg 105944385
>Sscrofa_Chr09
|| Length = 153670197
Score = 93.7 bits (47), Expect = 2e-16
Identities = 150/183 (81%), Gaps = 1/183 (0%)
Strand = Plus / Minus
Query: 494 agctgttgggtcgtgtagtagatgcccttggtaacgccattgatggaaagggtccaattg 553
||||| ||||| || ||||||||||||| ||||| || |||||| |||| |||| | |
Sbjct: 101877090 agctgctgggttgtatagtagatgccctgggtaataacactgatggtaaggatccagtag 101877031
Query: 554 gttccaagacccgaaggcgagttggcctgaaagcccctgggatcattcctcgaatctctg 613
|| |||||||| | ||||||||||||| |||| |||||||||| ||| |||||||
Sbjct: 101877030 cttacaagacccatggatgagttggcctgaacgccc-tgggatcatttctctgatctctg 101876972
Query: 614 tgcgggaaccaatgcagactggcattaaggctgtggacagcctggtgccaattggtcgtg 673
||| ||||||| ||||||||||| |||| |||||||| || |||||| |||||||| ||
Sbjct: 101876971 tgcaggaaccagtgcagactggcgttaatgctgtggatagtttggtgctaattggtcatg 101876912
Query: 674 gtc 676
|||
Sbjct: 101876911 gtc 101876909
Score = 85.7 bits (43), Expect = 5e-14
Identities = 76/87 (87%)
Strand = Plus / Minus
Query: 967 aatggcaaacatgctttgatcatctatgatgacttatccaaacaggctgttgcttatcgt 1026
||||||| | |||| |||||||| |||||||| |||||||| |||||| |||||||| ||
Sbjct: 101875784 aatggcagaaatgccttgatcatttatgatgagttatccaagcaggctattgcttattgt 101875725
Query: 1027 cagatgtctctgctgctccgccgaccc 1053
||||| |||||||||||| || |||||
Sbjct: 101875724 cagatatctctgctgctctgcagaccc 101875698
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,940,541
Number of extensions: 155
Number of successful extensions: 155
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 12
Length of query: 1104
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1083
Effective length of database: 2,808,413,156
Effective search space: 3041511447948
Effective search space used: 3041511447948
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)