Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001686
(1248 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777247.1| dehydrogenase/reductase SDR family member 4 [Bo... 376 e-104
Alignment gi|NP_001069359.1| L-xylulose reductase [Bos taurus]. 91 3e-18
Alignment gi|NP_001193891.1| L-xylulose reductase-like [Bos taurus]. 86 5e-17
Alignment gi|NP_001039789.1| estradiol 17-beta-dehydrogenase 8 [Bos tauru... 84 3e-16
Alignment gi|NP_001077186.1| carbonyl reductase family member 4 [Bos taur... 81 2e-15
Alignment gi|NP_001029660.1| 3-hydroxybutyrate dehydrogenase type 2 [Bos ... 81 2e-15
Alignment gi|NP_001030260.1| dehydrogenase/reductase SDR family member 11... 79 1e-14
Alignment gi|NP_777126.1| 17-beta-hydroxysteroid dehydrogenase 14 [Bos ta... 77 2e-14
Alignment gi|NP_001068891.1| 2,4-dienoyl-CoA reductase, mitochondrial [Bo... 76 7e-14
Alignment gi|NP_001007810.1| peroxisomal multifunctional enzyme type 2 [B... 74 2e-13
>ref|NP_777247.1| dehydrogenase/reductase SDR family member 4 [Bos taurus].
Length = 260
Score = 376 bits (965), Expect = e-104
Identities = 189/245 (77%), Positives = 212/245 (86%)
Frame = +3
Query: 168 MASTGVERRKPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQG 347
MAS G+ RR PL+NKVALVTASTDGIG AIARRLAQDGAHVVVSSRKQ+NVDR VATL+G
Sbjct: 1 MASCGMARRNPLDNKVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDRAVATLKG 60
Query: 348 EGLSVTGTVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKIL 527
EGLSVTGTVCHVGKAEDRERLVA AV LHGGVDIL+SNAAV+PFFG+++D EEVWDKIL
Sbjct: 61 EGLSVTGTVCHVGKAEDRERLVATAVKLHGGVDILISNAAVSPFFGSLMDVPEEVWDKIL 120
Query: 528 HVNVKATVLMTKAVVPEMEKRXXXXXXXXXXXXAYHPFPNLGPYNVSKTALLGLTKNLAV 707
VNVKAT L+TKAVVPEM KR AY PFP+LGPYNVSKTALLGLTKNLA+
Sbjct: 121 DVNVKATALLTKAVVPEMAKRGGGSIVIVSSIAAYSPFPSLGPYNVSKTALLGLTKNLAL 180
Query: 708 ELAPRNIRVNCLAPGLIKTNFSQVLWMDKARKEYMKESLRIRRLGNPEDCAGIVSFLCSE 887
ELA N+RVNCLAPGLI+T+FS+VLW D AR+E +K + +I+R+G PE+CAGIVSFLCSE
Sbjct: 181 ELAESNVRVNCLAPGLIRTSFSRVLWEDPARQESIKATFQIKRIGKPEECAGIVSFLCSE 240
Query: 888 DASYI 902
DASYI
Sbjct: 241 DASYI 245
>ref|NP_001069359.1| L-xylulose reductase [Bos taurus].
Length = 244
Score = 90.5 bits (223), Expect = 3e-18
Identities = 74/233 (31%), Positives = 109/233 (46%), Gaps = 1/233 (0%)
Frame = +3
Query: 201 LENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCH 380
L + ALVT + GIG +I + L GA VV SR Q ++D V G TVC
Sbjct: 5 LAGRRALVTGAGKGIGRSIVKALHAAGARVVAVSRTQADLDSLVRECPG-----VETVC- 58
Query: 381 VGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMT 560
V A+ A+ G VD+LV+NAAV F ++ T+E +D VN++A + ++
Sbjct: 59 VDLAD--WEATEQALGGVGPVDLLVNNAAV-AFLQPFLEVTKEAYDMSFSVNLRAVIQVS 115
Query: 561 KAVVPEMEKRXXXXXXXXXXXXA-YHPFPNLGPYNVSKTALLGLTKNLAVELAPRNIRVN 737
+ V + R A N Y +K AL LTK +AVEL P IRVN
Sbjct: 116 QIVARGLIARGAPGVIVNVSSQASQRGLTNHSVYCSTKGALDTLTKVMAVELGPHKIRVN 175
Query: 738 CLAPGLIKTNFSQVLWMDKARKEYMKESLRIRRLGNPEDCAGIVSFLCSEDAS 896
+ P ++ T Q W D + + M + + + R E+ + FL S+ +S
Sbjct: 176 AVNPTVVMTPMGQAAWSDPQKAKAMLDRIPLGRFAEVENVVDTILFLLSDRSS 228
>ref|NP_001193891.1| L-xylulose reductase-like [Bos taurus].
Length = 244
Score = 86.3 bits (212), Expect = 5e-17
Identities = 71/228 (31%), Positives = 109/228 (47%), Gaps = 4/228 (1%)
Frame = +3
Query: 216 ALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAE 395
ALVT + GIG + L GA VV SR N D + +L E + +G +
Sbjct: 10 ALVTGAGKGIGRDTVKALYASGARVVAVSRT--NAD--LVSLSKECPGIEPVCVDLGDWK 65
Query: 396 DRERLVAMAVNLHGGVDILVSNAAV---NPFFGNIIDATEEVWDKILHVNVKATVLMTKA 566
E+ A+ G VD+LV+NAAV PF ++ T+E +D+ VN+++ +++
Sbjct: 66 ATEK----ALGGVGPVDLLVNNAAVALMRPF----LEVTKEDFDRSFSVNLRSAFQVSQI 117
Query: 567 VVPEMEKRXXXXXXXXXXXXAYH-PFPNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCL 743
V M R H FPNL Y+ +K A+ LTK++A+EL P IRVN +
Sbjct: 118 VARGMINRGVPGSIVNVSSMVAHVTFPNLAAYSTTKGAMTMLTKSMAMELGPYKIRVNSV 177
Query: 744 APGLIKTNFSQVLWMDKARKEYMKESLRIRRLGNPEDCAGIVSFLCSE 887
P ++ T Q + D + +KE +R+ ED + FL S+
Sbjct: 178 NPTVVLTAMGQKVSADPEFSQKLKERHPLRKFAEVEDVVNSILFLLSD 225
>ref|NP_001039789.1| estradiol 17-beta-dehydrogenase 8 [Bos taurus].
Length = 259
Score = 84.0 bits (206), Expect = 3e-16
Identities = 71/246 (28%), Positives = 107/246 (43%), Gaps = 12/246 (4%)
Frame = +3
Query: 201 LENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGL-------- 356
L + +ALVT + GIG AI+ RLA +GA V TV L G G
Sbjct: 7 LRSALALVTGAGGGIGRAISVRLAAEGAAVAACDLDGAAARETVQLLGGPGTEEGAPRGA 66
Query: 357 --SVTGTVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILH 530
+ V G A V + V + + + F ++ +E+ WDK++
Sbjct: 67 HAAFQADVSEAGAARRLLEQVQACFSRPPSVVVSCAGITRDEF---LLHMSEDNWDKVIA 123
Query: 531 VNVKATVLMTKAVVPEMEKRXXXXXXXXXXXXAYHPFPNLGP--YNVSKTALLGLTKNLA 704
VN+K L+T+A + N+G Y SK ++GLT++ A
Sbjct: 124 VNLKGIFLVTQAAAQALVSSGCPGSIINISSII-GKVGNMGQTNYAASKAGVIGLTQSAA 182
Query: 705 VELAPRNIRVNCLAPGLIKTNFSQVLWMDKARKEYMKESLRIRRLGNPEDCAGIVSFLCS 884
EL IR N + PG I+T +Q + K + + + +GNPED A +V+FL S
Sbjct: 183 RELGRHGIRCNSVLPGFIRTPMTQKVPQKVLDK--VTGMIPMAHMGNPEDVADVVAFLAS 240
Query: 885 EDASYI 902
ED+ YI
Sbjct: 241 EDSGYI 246
>ref|NP_001077186.1| carbonyl reductase family member 4 [Bos taurus].
Length = 237
Score = 81.3 bits (199), Expect = 2e-15
Identities = 63/224 (28%), Positives = 105/224 (46%)
Frame = +3
Query: 207 NKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVG 386
+KV V + GIG A+AR +AQ G + + +R E L G+ L+++ C V
Sbjct: 2 DKVCAVFGGSRGIGRAVARLMAQRGYRLAIVARNLEGARAAAGDLGGDHLALS---CDVA 58
Query: 387 KAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKA 566
K D + G V+ LV+ A +N + TE++ + LH N+ ++L +A
Sbjct: 59 KEHDVQNTFEEIEKNLGRVNFLVNAAGINRDNLLVRTNTEDMLSQ-LHTNLLGSMLTCRA 117
Query: 567 VVPEMEKRXXXXXXXXXXXXAYHPFPNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLA 746
+ M K+ Y+ SK L+G ++ LA E+A + IRVN +A
Sbjct: 118 ALKTMIKQQRGSIVNVGSVVGLKGNSGQSVYSASKGGLVGFSRALAKEVAKKKIRVNVVA 177
Query: 747 PGLIKTNFSQVLWMDKARKEYMKESLRIRRLGNPEDCAGIVSFL 878
PG I T+ ++ L +E +K+++ + R G+ D A FL
Sbjct: 178 PGFIHTDMTKDL-----NEELLKKNIPLGRFGDALDVAQAAVFL 216
>ref|NP_001029660.1| 3-hydroxybutyrate dehydrogenase type 2 [Bos taurus].
Length = 245
Score = 80.9 bits (198), Expect = 2e-15
Identities = 68/243 (27%), Positives = 116/243 (47%), Gaps = 9/243 (3%)
Frame = +3
Query: 201 LENKVALVTASTDGIGLAIARRLAQDGAHVV---VSSRKQENVDRTVATLQGEGLSVTGT 371
L+ KV ++TA+ GIG A A A++GA V+ ++ K + +D+ + L VT
Sbjct: 4 LDGKVIVLTAAAQGIGRAAALAFAKEGAKVIATDINDSKLQELDKYPG-IHTRVLDVTKK 62
Query: 372 VCHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATV 551
A D ERL D+L N A G I+D E WD +++NV++
Sbjct: 63 KQIDQFANDIERL-----------DVLF-NVAGFVHHGTILDCEETDWDFSMNLNVRSMY 110
Query: 552 LMTKAVVPEM-EKRXXXXXXXXXXXXAYHPFPNLGPYNVSKTALLGLTKNLAVELAPRNI 728
LM KA +P+M ++ + N Y+ +K A++GLTK++A + + I
Sbjct: 111 LMIKAFLPKMMAQKSGNIINMSSVASSIKGVVNRCVYSTTKAAVIGLTKSVAADFIQQGI 170
Query: 729 RVNCLAPGLIKTNFSQVLWM-----DKARKEYMKESLRIRRLGNPEDCAGIVSFLCSEDA 893
R NC+ PG + T Q ++A +++K + R E+ A + +L S+++
Sbjct: 171 RCNCVCPGTVDTPSLQERIQARPNPEEALSDFLKRQ-KTGRFATAEEVALLCVYLASDES 229
Query: 894 SYI 902
+YI
Sbjct: 230 AYI 232
>ref|NP_001030260.1| dehydrogenase/reductase SDR family member 11 precursor [Bos
taurus].
Length = 255
Score = 78.6 bits (192), Expect = 1e-14
Identities = 68/237 (28%), Positives = 113/237 (47%), Gaps = 11/237 (4%)
Frame = +3
Query: 207 NKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTV---- 374
+++ALVT ++ GIG A+AR L Q G VV +R N++ A + G GT+
Sbjct: 6 DRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAG--YPGTLIPYR 63
Query: 375 CHVGKAEDRERLVAMAVNLHGGVDILVSNAAV-NPFFGNIIDATEEVWDKILHVNVKATV 551
C + ED + + + H GVDI ++NA + P ++ + W ++ +VNV A
Sbjct: 64 CDLSNEEDILSMFSAVRSQHSGVDICINNAGLARP--DTLLSGSTSGWKEMFNVNVLALS 121
Query: 552 LMTKAVVPEM-EKRXXXXXXXXXXXXAYHPFPNLGP---YNVSKTALLGLTKNLAVEL-- 713
+ T+ M E++ H P Y+ +K A+ LT+ L EL
Sbjct: 122 ICTREACQSMRERKVDDGHIININSMCGHRVPPPAETHFYSATKYAVTALTEGLRQELRE 181
Query: 714 APRNIRVNCLAPGLIKTNFSQVLWMDKARKEYMKESLRIRRLGNPEDCAGIVSFLCS 884
A +IR C++PG+++T F+ L DK ++ ++ L PED A V ++ S
Sbjct: 182 ARSHIRATCISPGVVETQFAFKL-HDKDPEKAAATYEHMKCL-KPEDVAEAVIYVLS 236
>ref|NP_777126.1| 17-beta-hydroxysteroid dehydrogenase 14 [Bos taurus].
Length = 270
Score = 77.4 bits (189), Expect = 2e-14
Identities = 64/236 (27%), Positives = 104/236 (44%), Gaps = 10/236 (4%)
Frame = +3
Query: 210 KVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGK 389
KV +VT GIG I R + GA VV+ + + L G +C V +
Sbjct: 10 KVVIVTGGGRGIGAGIVRAFVESGAQVVICDKDEARGRAVERELPG----TVFLLCDVTR 65
Query: 390 AEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAV 569
ED LV+ + G +D +V+NA +P + + + + ++L +N+ T +TK
Sbjct: 66 EEDVRTLVSETIRRFGRLDCIVNNAGYHPPPQWPEETSAQGFRQLLELNLLGTYTLTKLA 125
Query: 570 VPEMEKRXXXXXXXXXXXXAYHPFPNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAP 749
+P + K A + PY +K A+ +TK LA++ + +RVNC++P
Sbjct: 126 LPHLRKSRGNVINISSLVGAIGQSQAV-PYVATKGAVTAMTKALALDESQYGVRVNCISP 184
Query: 750 GLIKTNFSQVLWMDKA----------RKEYMKESLRIRRLGNPEDCAGIVSFLCSE 887
G I T LW + A R+ + + L R+G P + A FL SE
Sbjct: 185 GNIWT----PLWEELAASTPDPTATIREGTLAQPL--GRMGQPAEVAAAAVFLASE 234
>ref|NP_001068891.1| 2,4-dienoyl-CoA reductase, mitochondrial [Bos taurus].
Length = 329
Score = 75.9 bits (185), Expect = 7e-14
Identities = 68/241 (28%), Positives = 110/241 (45%), Gaps = 8/241 (3%)
Frame = +3
Query: 204 ENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGE-GLSVTGTVCH 380
+ KVA +T G+G + L+ GA V++SRK + + T + + G V C
Sbjct: 52 QGKVAFITGGGTGLGKGMTTCLSSLGAQCVIASRKIDVLKVTAEQISSQTGNKVHAIQCD 111
Query: 381 VGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEV----WDKILHVNVKAT 548
V + + V+ + + G DI+++NAA GN I +E + W I + + T
Sbjct: 112 VRDPDMVQNAVSETIKVIGHPDIVINNAA-----GNFISPSERLSPNAWKTITDIVLNGT 166
Query: 549 VLMTKAVVPEMEK-RXXXXXXXXXXXXAYHPFPNLGPYNVSKTALLGLTKNLAVELAPRN 725
+T A+ E+ K + A + P +K + L K+LA E
Sbjct: 167 AFVTLAIGKELIKAQKGASFLAITTIYAETGSGFVVPSASAKAGVEALNKSLAAEWGKYG 226
Query: 726 IRVNCLAPGLIKTN--FSQVLWMDKARKEYMKESLRIRRLGNPEDCAGIVSFLCSEDASY 899
+R N + PG IKT FS++ KE M + + RLG E+ A + +FLCS+ AS+
Sbjct: 227 MRFNVIQPGPIKTKGAFSRLDPTGAFEKE-MIDRIPCGRLGTVEELANLAAFLCSDYASW 285
Query: 900 I 902
I
Sbjct: 286 I 286
>ref|NP_001007810.1| peroxisomal multifunctional enzyme type 2 [Bos taurus].
Length = 736
Score = 74.3 bits (181), Expect = 2e-13
Identities = 66/237 (27%), Positives = 109/237 (45%), Gaps = 11/237 (4%)
Frame = +3
Query: 210 KVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQE---------NVDRTVATLQGEGLSV 362
+V LVT + G+G A A A+ GA VVV+ + + + D+ V ++ +G
Sbjct: 10 RVVLVTGAGGGLGRAYALAFAERGASVVVNDLRGDFTGVGKGSLSADKVVEEIRRKGGKA 69
Query: 363 TGTVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAV--NPFFGNIIDATEEVWDKILHVN 536
V + E+ E++V A++ G +DI+++NA + + F I D E WDKI V+
Sbjct: 70 ---VANYDSVEEGEKIVKTALDAFGRIDIVINNAGILRDRSFSRISD---EDWDKIQRVH 123
Query: 537 VKATVLMTKAVVPEMEKRXXXXXXXXXXXXAYHPFPNLGPYNVSKTALLGLTKNLAVELA 716
++ + L+T+A M+K+ + Y +K LLGL+ LAVE
Sbjct: 124 LRGSFLVTRAAWDHMKKQKFGRIIMTSSASRIYGNFGQANYCAAKLGLLGLSNCLAVEGK 183
Query: 717 PRNIRVNCLAPGLIKTNFSQVLWMDKARKEYMKESLRIRRLGNPEDCAGIVSFLCSE 887
NI N +AP +L E + E+L+ P+ A +V +LC E
Sbjct: 184 KNNIHCNTIAPTAGSRMTQSIL------PEDLVEALK------PDYVAPLVLWLCHE 228
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 54,966,991
Number of extensions: 1755197
Number of successful extensions: 8753
Number of sequences better than 1.0e-05: 32
Number of HSP's gapped: 8404
Number of HSP's successfully gapped: 32
Length of query: 416
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 311
Effective length of database: 14,207,134
Effective search space: 4418418674
Effective search space used: 4418418674
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001686
(1248 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001041699.1| dehydrogenase/reductase SDR family member 4 ... 380 e-105
Alignment gi|XP_547738.2| PREDICTED: similar to dehydrogenase/reductase (... 313 2e-85
Alignment gi|XP_547739.1| PREDICTED: similar to dehydrogenase/reductase m... 271 1e-72
Alignment gi|XP_851139.1| PREDICTED: similar to peroxisomal trans-2-enoyl... 95 2e-19
Alignment gi|XP_532316.2| PREDICTED: similar to peroxisomal trans-2-enoyl... 94 2e-19
Alignment gi|XP_535676.1| PREDICTED: similar to dehydrogenase/reductase (... 86 7e-17
Alignment gi|XP_849704.1| PREDICTED: similar to Lung carbonyl reductase [... 85 2e-16
Alignment gi|XP_534547.1| PREDICTED: similar to carbonic reductase 4 [Can... 84 4e-16
Alignment gi|XP_548249.1| PREDICTED: similar to short-chain dehydrogenase... 80 4e-15
Alignment gi|NP_001041446.1| 17-beta-hydroxysteroid dehydrogenase 14 [Can... 80 5e-15
>ref|NP_001041699.1| dehydrogenase/reductase SDR family member 4 [Canis lupus
familiaris].
Length = 255
Score = 380 bits (976), Expect = e-105
Identities = 192/238 (80%), Positives = 208/238 (87%)
Frame = +3
Query: 189 RRKPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTG 368
R+ PL NKVALVTASTDGIG AIARRLA+DGAHVVVSSRKQ NVDR VA LQGEGLSVTG
Sbjct: 3 RQDPLANKVALVTASTDGIGFAIARRLARDGAHVVVSSRKQHNVDRAVAALQGEGLSVTG 62
Query: 369 TVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKAT 548
TVCHVGKAEDRERLVA AVNLHGG+DIL+SNAAVNPFFGN++D TEEVWDKIL +NVKAT
Sbjct: 63 TVCHVGKAEDRERLVATAVNLHGGIDILISNAAVNPFFGNLMDVTEEVWDKILDINVKAT 122
Query: 549 VLMTKAVVPEMEKRXXXXXXXXXXXXAYHPFPNLGPYNVSKTALLGLTKNLAVELAPRNI 728
LMTKAVVPEMEKR AY PFP LGPYNVSKTALLGLTKNLA EL RNI
Sbjct: 123 ALMTKAVVPEMEKRGGGSVVIVASIGAYLPFPGLGPYNVSKTALLGLTKNLARELDQRNI 182
Query: 729 RVNCLAPGLIKTNFSQVLWMDKARKEYMKESLRIRRLGNPEDCAGIVSFLCSEDASYI 902
RVNCLAPGLIKT+FS+VLWMDKAR+E +K+ ++IRR+G P+DCAGIVSFLCSEDASYI
Sbjct: 183 RVNCLAPGLIKTSFSKVLWMDKAREESIKKVMQIRRMGKPDDCAGIVSFLCSEDASYI 240
>ref|XP_547738.2| PREDICTED: similar to dehydrogenase/reductase (SDR family) member 2
isoform 2 [Canis familiaris].
Length = 370
Score = 313 bits (802), Expect = 2e-85
Identities = 160/248 (64%), Positives = 189/248 (76%)
Frame = +3
Query: 159 SVRMASTGVERRKPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVAT 338
SVRM STG++++ L N+VA+VT +TDGIG AIARRLA+DGAHVVVSSRKQ NVDR VA
Sbjct: 109 SVRMNSTGIDQKGVLANRVAVVTGATDGIGFAIARRLARDGAHVVVSSRKQHNVDRAVAA 168
Query: 339 LQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWD 518
LQGEGLSVTGTVCHVGKAEDRERLVA + +GG+D LV NAAVNP + + A+EEVWD
Sbjct: 169 LQGEGLSVTGTVCHVGKAEDRERLVATVLEHYGGLDFLVCNAAVNPLVRSTLQASEEVWD 228
Query: 519 KILHVNVKATVLMTKAVVPEMEKRXXXXXXXXXXXXAYHPFPNLGPYNVSKTALLGLTKN 698
KIL VNVK+ L+ ++P ME R AY P LGPYNVSKTALLGLT+
Sbjct: 229 KILDVNVKSPALLLSQLLPHMENRGMGAVILVSSIAAYIPHVELGPYNVSKTALLGLTRT 288
Query: 699 LAVELAPRNIRVNCLAPGLIKTNFSQVLWMDKARKEYMKESLRIRRLGNPEDCAGIVSFL 878
L++ELAP+ IRVNCL PG+IKTNFS+VL M++ KE R++RLG PEDCAG+VSFL
Sbjct: 289 LSLELAPKGIRVNCLVPGIIKTNFSKVLHMNEVFWNNFKEKYRLQRLGQPEDCAGLVSFL 348
Query: 879 CSEDASYI 902
CS DA YI
Sbjct: 349 CSPDACYI 356
>ref|XP_547739.1| PREDICTED: similar to dehydrogenase/reductase member 2 [Canis
familiaris].
Length = 278
Score = 271 bits (692), Expect = 1e-72
Identities = 148/264 (56%), Positives = 174/264 (65%), Gaps = 19/264 (7%)
Frame = +3
Query: 168 MASTGVERRKPLENKVALVTASTDG-------------------IGLAIARRLAQDGAHV 290
M+S +R L +KVA++T ST G IG AIARRLA+DGAHV
Sbjct: 1 MSSNRTDRSYALADKVAVITGSTKGLPGGGWGGDEATVAISAHRIGFAIARRLARDGAHV 60
Query: 291 VVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAV 470
VVSSRKQ NVDR VA LQGEGLSVTGTVCHVGKAEDRERLVA A+ +GGVD LV A V
Sbjct: 61 VVSSRKQHNVDRAVAALQGEGLSVTGTVCHVGKAEDRERLVATALEHYGGVDFLVCVAGV 120
Query: 471 NPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRXXXXXXXXXXXXAYHPFPNL 650
NP G+ + A+E+VWDK+L VNVK+ L+ ++P ME R AY P P L
Sbjct: 121 NPLVGSTLGASEQVWDKVLDVNVKSPALLLSQLLPHMENRGAGSVVLVSSMVAYVPIPKL 180
Query: 651 GPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQVLWMDKARKEYMKESLRI 830
G YN SKTALLGL K+LA+ELAP+ IRVNCL PG+IKT+F QV + +
Sbjct: 181 GVYNTSKTALLGLCKSLAIELAPKGIRVNCLVPGIIKTDFMQVEKTLPYLLPDFNDIYGL 240
Query: 831 RRLGNPEDCAGIVSFLCSEDASYI 902
+R G PE+CAGIVSFLCS DASYI
Sbjct: 241 QRFGEPEECAGIVSFLCSSDASYI 264
>ref|XP_851139.1| PREDICTED: similar to peroxisomal trans-2-enoyl-CoA reductase
isoform 2 [Canis familiaris].
Length = 303
Score = 94.7 bits (234), Expect = 2e-19
Identities = 74/256 (28%), Positives = 117/256 (45%), Gaps = 16/256 (6%)
Frame = +3
Query: 183 VERRKPLE-----NKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQG 347
VERR L +++A+VT GIG AIA L G +VV++SR + + T L+
Sbjct: 5 VERRSFLAPDLLLHQLAIVTGGATGIGKAIATELLHLGCNVVIASRNFDRLKSTAEELRA 64
Query: 348 E-----GLSVTGTVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEV 512
VT C++ K E+ LV + ++G ++ LV+N G + A E +
Sbjct: 65 SLPPTNKAQVTPIKCNIRKEEEVNNLVRSTLEIYGKINFLVNNGG-----GQFMAAMEHI 119
Query: 513 ----WDKILHVNVKATVLMTKAVVPEMEKRXXXXXXXXXXXXAYHPFPNLGPYNVSKTAL 680
W ++ N+ T M KAV K + +P ++ +
Sbjct: 120 NAKGWHAVIETNLTGTFYMCKAVYNSWMKEHGGSIVNIIILTR-NGYPGFTHSGAARAGV 178
Query: 681 LGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQVLWMDKARKEYMK--ESLRIRRLGNPED 854
LTK+LAVE A IR+NC+APG I + + + A + E + +R+G PE+
Sbjct: 179 YNLTKSLAVEWASSGIRINCVAPGTIYSPSAVDNYGPLAENMFAGYFEKIPAKRIGVPEE 238
Query: 855 CAGIVSFLCSEDASYI 902
+ +V FL S AS+I
Sbjct: 239 ISSVVCFLLSPAASFI 254
>ref|XP_532316.2| PREDICTED: similar to peroxisomal trans-2-enoyl-CoA reductase
[Canis familiaris].
Length = 303
Score = 94.4 bits (233), Expect = 2e-19
Identities = 74/256 (28%), Positives = 118/256 (46%), Gaps = 16/256 (6%)
Frame = +3
Query: 183 VERRKPLE-----NKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQG 347
VERR L +++A+VT GIG AIA L G +VV++SR + + T L+
Sbjct: 5 VERRSFLAPGLLLHQLAIVTGGATGIGKAIATELLHLGCNVVIASRNFDRLKSTAEELRA 64
Query: 348 E-----GLSVTGTVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEV 512
VT C++ K E+ LV + ++G ++ LV+N G + A E +
Sbjct: 65 SLPPTNQAQVTPIKCNIRKEEEVNNLVRSTLEIYGKINFLVNNGG-----GQFVAAMEHI 119
Query: 513 ----WDKILHVNVKATVLMTKAVVPEMEKRXXXXXXXXXXXXAYHPFPNLGPYNVSKTAL 680
W ++ +N+ T M KAV K + +P ++ +
Sbjct: 120 NAKGWHAVIEINLTGTFYMCKAVYNSWMKEPGGSIVNIIILTR-NGYPGFTHSGAARAGV 178
Query: 681 LGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQVLWMDKARKEYMKESLRI--RRLGNPED 854
LTK+LAVE A IR+NC+APG I + + + A + +I +R+G PE+
Sbjct: 179 YNLTKSLAVEWASSGIRINCVAPGTIYSPSAVDNYGPLAENMFAGYFGKIPAKRIGVPEE 238
Query: 855 CAGIVSFLCSEDASYI 902
+ +V FL S AS+I
Sbjct: 239 ISSVVCFLLSPAASFI 254
>ref|XP_535676.1| PREDICTED: similar to dehydrogenase/reductase (SDR family) member 6
[Canis familiaris].
Length = 245
Score = 85.9 bits (211), Expect = 7e-17
Identities = 64/241 (26%), Positives = 113/241 (46%), Gaps = 7/241 (2%)
Frame = +3
Query: 201 LENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRT--VATLQGEGLSVTGTV 374
L+ KV ++TA+ GIG A A A++GA V+ + + + +Q L VT
Sbjct: 4 LDGKVIVLTAAAQGIGRAAALAFAREGAKVIATDINESKLQELEKYPGIQTRTLDVT--- 60
Query: 375 CHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVL 554
+++ + N G +D+L N A G I+D E+ WD +++N+++ L
Sbjct: 61 --------KKKQIDQFANEIGRLDVLF-NVAGFVHHGTILDCEEKDWDFSMNLNIRSMYL 111
Query: 555 MTKAVVPEM-EKRXXXXXXXXXXXXAYHPFPNLGPYNVSKTALLGLTKNLAVELAPRNIR 731
M KA +P+M ++ + N Y+ +K A++GLTK+LA + + IR
Sbjct: 112 MIKAFLPKMLAQKSGNIINMSSVASSIKGVENRCVYSTTKAAVIGLTKSLATDFIQQGIR 171
Query: 732 VNCLAPGLIKTNFSQVLWMDKARKE----YMKESLRIRRLGNPEDCAGIVSFLCSEDASY 899
NC+ P + T Q + E Y + +I R E+ A + +L S++++Y
Sbjct: 172 CNCVCPATVDTPSLQERIQARPNTEEALNYFLKRQKIGRFATAEEIALLCVYLASDESAY 231
Query: 900 I 902
I
Sbjct: 232 I 232
>ref|XP_849704.1| PREDICTED: similar to Lung carbonyl reductase [NADPH]
(NADPH-dependent carbonyl reductase) (LCR) (Adipocyte
P27 protein) (AP27) [Canis familiaris].
Length = 270
Score = 84.7 bits (208), Expect = 2e-16
Identities = 72/221 (32%), Positives = 107/221 (48%), Gaps = 5/221 (2%)
Frame = +3
Query: 240 GIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVC-HVGKAEDRERLVA 416
GIG + L GA V+ SR N D + + G+ TVC +G E ER
Sbjct: 44 GIGRDTVKALHGLGARVLAVSRT--NTDLVSLSKECPGIE---TVCVDLGDWEATER--- 95
Query: 417 MAVNLHGGVDILVSNAAV---NPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEK 587
A+ G VD+LV+NAAV PF ++ T+E +D+ +VN+++ V +++ V M
Sbjct: 96 -ALGSVGPVDLLVNNAAVALLQPF----LEVTKEAFDRAFNVNLRSVVQVSQIVARGMIH 150
Query: 588 RXXXXXXXXXXXXAYH-PFPNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKT 764
R H FPNL Y+ +K A+ LTK +A EL P IRVN + P ++ T
Sbjct: 151 RGVPGSIVNVSSMVAHVTFPNLSVYSSTKGAMTMLTKAMASELGPYQIRVNSVDPTVVPT 210
Query: 765 NFSQVLWMDKARKEYMKESLRIRRLGNPEDCAGIVSFLCSE 887
SQ + D +KE +R+ + ED + FL S+
Sbjct: 211 AMSQKILTDPELVRKLKERHPLRKFADMEDVVNSILFLLSD 251
>ref|XP_534547.1| PREDICTED: similar to carbonic reductase 4 [Canis familiaris].
Length = 237
Score = 83.6 bits (205), Expect = 4e-16
Identities = 63/224 (28%), Positives = 107/224 (47%)
Frame = +3
Query: 207 NKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVG 386
++V V + GIG A+A+ +AQ G + V +R E L G+ L+ + C V
Sbjct: 2 DRVCAVFGGSRGIGRAVAQVMAQKGYRLAVIARNLEGARAAAGELGGDHLAFS---CDVA 58
Query: 387 KAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKA 566
K D + G V+ LV+ A +N + TE++ + LH N+ ++L KA
Sbjct: 59 KERDVQNTFEEMEKNLGRVNFLVNAAGINRDSLLVRTKTEDMISQ-LHTNLLGSMLTCKA 117
Query: 567 VVPEMEKRXXXXXXXXXXXXAYHPFPNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLA 746
+ M ++ Y+ SK L+G ++ LA E+A + IRVN +A
Sbjct: 118 ALKTMIQQQRGSIVNVGSIIGLKGNSGQSVYSASKGGLVGFSRALAKEVARKKIRVNVVA 177
Query: 747 PGLIKTNFSQVLWMDKARKEYMKESLRIRRLGNPEDCAGIVSFL 878
PG + T+ ++ L ++E++K+++ + R G P D A V FL
Sbjct: 178 PGFVHTDMTKDL-----KEEHLKKNIPLGRFGEPIDVAHAVVFL 216
>ref|XP_548249.1| PREDICTED: similar to short-chain dehydrogenase/reductase isoform 1
[Canis familiaris].
Length = 274
Score = 80.1 bits (196), Expect = 4e-15
Identities = 72/249 (28%), Positives = 118/249 (47%), Gaps = 11/249 (4%)
Frame = +3
Query: 171 ASTGVERRKPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGE 350
A G+ER + +++ALVT ++ GIG A+AR L Q G VV +R N++ A +
Sbjct: 16 ARAGMERWR---DRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSA 72
Query: 351 GLSVTGTV----CHVGKAEDRERLVAMAVNLHGGVDILVSNAAV-NPFFGNIIDATEEVW 515
G GT+ C + ED + + + H GVDI ++NA + P ++ + W
Sbjct: 73 G--YPGTLIPHRCDLSSEEDILSMFSAVRSQHSGVDICINNAGLARP--DTLLSGSTSGW 128
Query: 516 DKILHVNVKATVLMTKAVVPEMEKR----XXXXXXXXXXXXAYHPFPNLGPYNVSKTALL 683
+ +VNV A + T+ M++R P + Y+ +K A+
Sbjct: 129 KDMFNVNVLALSICTREAYQSMKERKVDDGHIININSMSGHQVSPHSVIHFYSATKYAVT 188
Query: 684 GLTKNLAVEL--APRNIRVNCLAPGLIKTNFSQVLWMDKARKEYMKESLRIRRLGNPEDC 857
LT+ L EL A +IR C++P +++T F+ L DK ++ RI+ L PED
Sbjct: 189 ALTEGLRQELREAQTHIRATCISPEVVETQFAFKL-HDKDPEKAAVTYERIKCL-KPEDV 246
Query: 858 AGIVSFLCS 884
A V ++ S
Sbjct: 247 AEAVIYVLS 255
>ref|NP_001041446.1| 17-beta-hydroxysteroid dehydrogenase 14 [Canis lupus familiaris].
Length = 270
Score = 79.7 bits (195), Expect = 5e-15
Identities = 69/233 (29%), Positives = 108/233 (46%), Gaps = 7/233 (3%)
Frame = +3
Query: 210 KVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTV---CH 380
KV +VT GIG IAR Q+GA VV+ K E+ R + +TGTV C
Sbjct: 10 KVVVVTGGGRGIGAGIARAFVQNGAQVVICD-KDESGGRALEQ------ELTGTVFILCD 62
Query: 381 VGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMT 560
V + +D + L++ V G +D +V+NA +P + + E + ++L +N+ T +T
Sbjct: 63 VTREKDVQTLISETVRRFGRLDCVVNNAGYHPPPQWPEETSAEGFRQLLELNLLGTYTVT 122
Query: 561 KAVVPEMEKRXXXXXXXXXXXXAYHPFPNLGPYNVSKTALLGLTKNLAVELAPRNIRVNC 740
K +P + K A + PY +K A+ +TK LA++ + +RVNC
Sbjct: 123 KFALPHLRKSQGNIINISSLVGAIGQVQAV-PYVATKGAVTAMTKALALDESRYGVRVNC 181
Query: 741 LAPGLIKTNFSQ---VLWMDKARKEYM-KESLRIRRLGNPEDCAGIVSFLCSE 887
++PG I T + L D A + + RLG P + FL SE
Sbjct: 182 ISPGNIWTPMWEGLAALTPDPAATVLQGTMNQPLGRLGQPAEVGAAAVFLASE 234
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 57,194,630
Number of extensions: 1791041
Number of successful extensions: 8773
Number of sequences better than 1.0e-05: 40
Number of HSP's gapped: 8522
Number of HSP's successfully gapped: 41
Length of query: 416
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 311
Effective length of database: 15,374,224
Effective search space: 4781383664
Effective search space used: 4781383664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001686
(1248 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_066284.2| dehydrogenase/reductase SDR family member 4 [Ho... 403 e-112
Alignment gi|NP_001075957.1| putative dehydrogenase/reductase SDR family ... 332 4e-91
Alignment gi|NP_932349.2| dehydrogenase/reductase SDR family member 4-lik... 299 4e-83
Alignment gi|NP_005785.1| dehydrogenase/reductase SDR family member 2 iso... 288 9e-78
Alignment gi|NP_878912.1| dehydrogenase/reductase SDR family member 2 iso... 252 4e-71
Alignment gi|NP_001180564.1| dehydrogenase/reductase SDR family member 4-... 176 2e-46
Alignment gi|NP_001180565.1| dehydrogenase/reductase SDR family member 4-... 154 1e-39
Alignment gi|NP_060911.2| peroxisomal trans-2-enoyl-CoA reductase [Homo s... 91 2e-18
Alignment gi|NP_055049.1| estradiol 17-beta-dehydrogenase 8 [Homo sapiens]. 85 1e-16
Alignment gi|NP_064524.3| 3-hydroxybutyrate dehydrogenase type 2 [Homo sa... 84 4e-16
>ref|NP_066284.2| dehydrogenase/reductase SDR family member 4 [Homo sapiens].
Length = 278
Score = 403 bits (1036), Expect = e-112
Identities = 209/279 (74%), Positives = 227/279 (81%)
Frame = +3
Query: 111 MRAAGQLLRACSQTWKSVRMASTGVERRKPLENKVALVTASTDGIGLAIARRLAQDGAHV 290
M AG LL C++ W SVRMAS+G+ RR PL NKVALVTASTDGIG AIARRLAQDGAHV
Sbjct: 1 MHKAG-LLGLCARAWNSVRMASSGMTRRDPLANKVALVTASTDGIGFAIARRLAQDGAHV 59
Query: 291 VVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAV 470
VVSSRKQ+NVD+ VATLQGEGLSVTGTVCHVGKAEDRERLVA AV LHGG+DILVSNAAV
Sbjct: 60 VVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGKAEDRERLVATAVKLHGGIDILVSNAAV 119
Query: 471 NPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRXXXXXXXXXXXXAYHPFPNL 650
NPFFG+I+D TEEVWDK L +NVKA LMTKAVVPEMEKR A+ P P
Sbjct: 120 NPFFGSIMDVTEEVWDKTLDINVKAPALMTKAVVPEMEKRGGGSVVIVSSIAAFSPSPGF 179
Query: 651 GPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQVLWMDKARKEYMKESLRI 830
PYNVSKTALLGLTK LA+ELAPRNIRVNCLAPGLIKT+FS++LWMDK ++E MKE+LRI
Sbjct: 180 SPYNVSKTALLGLTKTLAIELAPRNIRVNCLAPGLIKTSFSRMLWMDKEKEESMKETLRI 239
Query: 831 RRLGNPEDCAGIVSFLCSEDASYIXXXXXXXXXXXASRL 947
RRLG PEDCAGIVSFLCSEDASYI SRL
Sbjct: 240 RRLGEPEDCAGIVSFLCSEDASYITGETVVVGGGTPSRL 278
>ref|NP_001075957.1| putative dehydrogenase/reductase SDR family member 4-like 2 [Homo
sapiens].
Length = 281
Score = 332 bits (851), Expect = 4e-91
Identities = 173/272 (63%), Positives = 203/272 (74%), Gaps = 3/272 (1%)
Frame = +3
Query: 141 CSQTWKSVRMASTGVERRKPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENV 320
C++ KSVR+AS+G+ RR PL NKVALVTASTD IG A+A+RLAQDGAHVVVS RKQ+NV
Sbjct: 10 CARAGKSVRLASSGMTRRDPLTNKVALVTASTDWIGFAVAQRLAQDGAHVVVSRRKQQNV 69
Query: 321 DRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHGGVDIL---VSNAAVNPFFGNI 491
D+ VATLQGEGLS+TGTVCHVGK +D ERLVA A+ LHG +DIL ++N+ F+ +
Sbjct: 70 DQAVATLQGEGLSMTGTVCHVGKMKDWERLVATAMKLHGVIDILSLSITNSKRGLFWFTL 129
Query: 492 IDATEEVWDKILHVNVKATVLMTKAVVPEMEKRXXXXXXXXXXXXAYHPFPNLGPYNVSK 671
+ EE WD+ L +N KA LM KAVVPEMEKR A+ P P PYNVSK
Sbjct: 130 LQTAEEAWDRNLDINGKALALMIKAVVPEMEKRGGGSVGFLASVAAFRPLPGFSPYNVSK 189
Query: 672 TALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQVLWMDKARKEYMKESLRIRRLGNPE 851
TALLGL K LA+ELAPRNIRVNCLAPGLIKT+FS++LWMDK ++E MKE+LRIRRLG PE
Sbjct: 190 TALLGLNKTLAIELAPRNIRVNCLAPGLIKTSFSRMLWMDKEKEESMKETLRIRRLGEPE 249
Query: 852 DCAGIVSFLCSEDASYIXXXXXXXXXXXASRL 947
D GIVSFLCSEDASY+ SRL
Sbjct: 250 DSLGIVSFLCSEDASYLTGETVMVGGGTPSRL 281
>ref|NP_932349.2| dehydrogenase/reductase SDR family member 4-like 2 isoform 1
precursor [Homo sapiens].
Length = 232
Score = 299 bits (765), Expect(2) = 4e-83
Identities = 155/206 (75%), Positives = 168/206 (81%)
Frame = +3
Query: 126 QLLRACSQTWKSVRMASTGVERRKPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSR 305
+LL C+ KSVRMAS+ + RR PL NKVALVTASTDGIG AIARRLAQD AHVVVSSR
Sbjct: 5 RLLGLCAWARKSVRMASSRMTRRDPLTNKVALVTASTDGIGFAIARRLAQDRAHVVVSSR 64
Query: 306 KQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFG 485
KQ+NVD+ VATLQGEGLSVTGTVCHVGKAEDRERLVAMAV LHGG+DILVSNAAVNPFFG
Sbjct: 65 KQQNVDQAVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVKLHGGIDILVSNAAVNPFFG 124
Query: 486 NIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRXXXXXXXXXXXXAYHPFPNLGPYNV 665
+++D TEEVWDK L +NVKA LMTKAVVPEMEKR A+ P P PYNV
Sbjct: 125 SLMDVTEEVWDKTLDINVKAPALMTKAVVPEMEKRGGGSVVIVSSIAAFSPSPGFSPYNV 184
Query: 666 SKTALLGLTKNLAVELAPRNIRVNCL 743
SKTALLGL LA+ELAPRNIRVNCL
Sbjct: 185 SKTALLGLNNTLAIELAPRNIRVNCL 210
Score = 28.9 bits (63), Expect(2) = 4e-83
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1
Query: 748 LDSSRLTSARCCGWIRQER 804
LD SRL SA C GW R++R
Sbjct: 212 LDLSRLASAGCSGWTRKKR 230
>ref|NP_005785.1| dehydrogenase/reductase SDR family member 2 isoform 2 [Homo
sapiens].
Length = 280
Score = 288 bits (736), Expect = 9e-78
Identities = 148/248 (59%), Positives = 188/248 (75%)
Frame = +3
Query: 159 SVRMASTGVERRKPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVAT 338
SVRM+STG++R+ L N+VA+VT ST GIG AIARRLA+DGAHVV+SSRKQ+NVDR +A
Sbjct: 20 SVRMSSTGIDRKGVLANRVAVVTGSTSGIGFAIARRLARDGAHVVISSRKQQNVDRAMAK 79
Query: 339 LQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWD 518
LQGEGLSV G VCHVGKAEDRE+LVA A+ GGVD LV +A VNP G+ + +E++WD
Sbjct: 80 LQGEGLSVAGIVCHVGKAEDREQLVAKALEHCGGVDFLVCSAGVNPLVGSTLGTSEQIWD 139
Query: 519 KILHVNVKATVLMTKAVVPEMEKRXXXXXXXXXXXXAYHPFPNLGPYNVSKTALLGLTKN 698
KIL VNVK+ L+ ++P ME R AY+P LG YNVSKTALLGLT+
Sbjct: 140 KILSVNVKSPALLLSQLLPYMENR-RGAVILVSSIAAYNPVVALGVYNVSKTALLGLTRT 198
Query: 699 LAVELAPRNIRVNCLAPGLIKTNFSQVLWMDKARKEYMKESLRIRRLGNPEDCAGIVSFL 878
LA+ELAP++IRVNC+ PG+IKT+FS+V +++ + KE +++R+G EDCAGIVSFL
Sbjct: 199 LALELAPKDIRVNCVVPGIIKTDFSKVFHGNESLWKNFKEHHQLQRIGESEDCAGIVSFL 258
Query: 879 CSEDASYI 902
CS DASY+
Sbjct: 259 CSPDASYV 266
>ref|NP_878912.1| dehydrogenase/reductase SDR family member 2 isoform 1 [Homo
sapiens].
Length = 300
Score = 252 bits (643), Expect(2) = 4e-71
Identities = 137/238 (57%), Positives = 171/238 (71%)
Frame = +3
Query: 159 SVRMASTGVERRKPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVAT 338
SVRM+STG++R+ L N+VA+VT ST GIG AIARRLA+DGAHVV+SSRKQ+NVDR +A
Sbjct: 20 SVRMSSTGIDRKGVLANRVAVVTGSTSGIGFAIARRLARDGAHVVISSRKQQNVDRAMAK 79
Query: 339 LQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWD 518
LQGEGLSV G VCHVGKAEDRE+LVA A+ GGVD LV +A VNP G+ + +E++WD
Sbjct: 80 LQGEGLSVAGIVCHVGKAEDREQLVAKALEHCGGVDFLVCSAGVNPLVGSTLGTSEQIWD 139
Query: 519 KILHVNVKATVLMTKAVVPEMEKRXXXXXXXXXXXXAYHPFPNLGPYNVSKTALLGLTKN 698
KIL VNVK+ L+ ++P ME R AY+P LG YNVSKTALLGLT+
Sbjct: 140 KILSVNVKSPALLLSQLLPYMENR-RGAVILVSSIAAYNPVVALGVYNVSKTALLGLTRT 198
Query: 699 LAVELAPRNIRVNCLAPGLIKTNFSQVLWMDKARKEYMKESLRIRRLGNPEDCAGIVS 872
LA+ELAP++IRVNC+ PG+IKT+FS+V+ R +M SL R N C G+ S
Sbjct: 199 LALELAPKDIRVNCVVPGIIKTDFSKVV-----RIGFMGMSLSGRTSRNIISCRGLGS 251
Score = 35.8 bits (81), Expect(2) = 4e-71
Identities = 18/30 (60%), Positives = 20/30 (66%)
Frame = +1
Query: 847 QRTVRASCLSYALKMPATSLGRQW*WVEGP 936
QRTV+ SC S AL+MPATS GR W P
Sbjct: 252 QRTVQESCPSCALQMPATSTGRTLRWQATP 281
>ref|NP_001180564.1| dehydrogenase/reductase SDR family member 4-like 2 isoform 2 [Homo
sapiens].
Length = 170
Score = 176 bits (447), Expect(2) = 2e-46
Identities = 101/167 (60%), Positives = 106/167 (63%)
Frame = +3
Query: 243 IGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMA 422
IG AIARRLAQD AHVVVSSRKQ+NVD+ VATLQGEGLSVTGTVCHVGKAEDRERLVAM
Sbjct: 16 IGFAIARRLAQDRAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGKAEDRERLVAMT 75
Query: 423 VNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRXXXX 602
L +NVKA LMTKAVVPEMEKR
Sbjct: 76 ----------------------------------LDINVKAPALMTKAVVPEMEKRGGGS 101
Query: 603 XXXXXXXXAYHPFPNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCL 743
A+ P P PYNVSKTALLGL LA+ELAPRNIRVNCL
Sbjct: 102 VVIVSSIAAFSPSPGFSPYNVSKTALLGLNNTLAIELAPRNIRVNCL 148
Score = 28.9 bits (63), Expect(2) = 2e-46
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1
Query: 748 LDSSRLTSARCCGWIRQER 804
LD SRL SA C GW R++R
Sbjct: 150 LDLSRLASAGCSGWTRKKR 168
>ref|NP_001180565.1| dehydrogenase/reductase SDR family member 4-like 2 isoform 3 [Homo
sapiens].
Length = 131
Score = 154 bits (388), Expect(2) = 1e-39
Identities = 76/109 (69%), Positives = 83/109 (76%)
Frame = +3
Query: 417 MAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRXX 596
MAV LHGG+DILVSNAAVNPFFG+++D TEEVWDK L +NVKA LMTKAVVPEMEKR
Sbjct: 1 MAVKLHGGIDILVSNAAVNPFFGSLMDVTEEVWDKTLDINVKAPALMTKAVVPEMEKRGG 60
Query: 597 XXXXXXXXXXAYHPFPNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCL 743
A+ P P PYNVSKTALLGL LA+ELAPRNIRVNCL
Sbjct: 61 GSVVIVSSIAAFSPSPGFSPYNVSKTALLGLNNTLAIELAPRNIRVNCL 109
Score = 28.9 bits (63), Expect(2) = 1e-39
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1
Query: 748 LDSSRLTSARCCGWIRQER 804
LD SRL SA C GW R++R
Sbjct: 111 LDLSRLASAGCSGWTRKKR 129
>ref|NP_060911.2| peroxisomal trans-2-enoyl-CoA reductase [Homo sapiens].
Length = 303
Score = 91.3 bits (225), Expect = 2e-18
Identities = 69/241 (28%), Positives = 111/241 (46%), Gaps = 7/241 (2%)
Frame = +3
Query: 201 LENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQG-----EGLSVT 365
L+ +VA+VT GIG AI + L + G++VV++SRK E + LQ + V
Sbjct: 16 LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVI 75
Query: 366 GTVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKA 545
C++ E+ LV ++ G ++ LV+N F + + W +L N+
Sbjct: 76 PIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGG-GQFLSPAEHISSKGWHAVLETNLTG 134
Query: 546 TVLMTKAVVPEMEKRXXXXXXXXXXXXAYHPFPNLGPYNVSKTALLGLTKNLAVELAPRN 725
T M KAV K FP ++ + LTK+LA+E A
Sbjct: 135 TFYMCKAVYSSWMKE-HGGSIVNIIVPTKAGFPLAVHSGAARAGVYNLTKSLALEWACSG 193
Query: 726 IRVNCLAPGLI--KTNFSQVLWMDKARKEYMKESLRIRRLGNPEDCAGIVSFLCSEDASY 899
IR+NC+APG+I +T ++ E + + +R+G PE+ + +V FL S AS+
Sbjct: 194 IRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKIPAKRIGVPEEVSSVVCFLLSPAASF 253
Query: 900 I 902
I
Sbjct: 254 I 254
>ref|NP_055049.1| estradiol 17-beta-dehydrogenase 8 [Homo sapiens].
Length = 261
Score = 85.1 bits (209), Expect = 1e-16
Identities = 71/243 (29%), Positives = 106/243 (43%), Gaps = 9/243 (3%)
Frame = +3
Query: 201 LENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSV------ 362
L + +ALVT + GIG A++ RLA +GA V + TV L G G
Sbjct: 9 LRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGN 68
Query: 363 -TGTVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNV 539
V +A L+ +V + A ++ +E+ WDK++ VN+
Sbjct: 69 HAAFQADVSEARAARCLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNL 128
Query: 540 KATVLMTKAVVPEMEKRXXXXXXXXXXXXAYHPFPNLGP--YNVSKTALLGLTKNLAVEL 713
K T L+T+A + N+G Y SK ++GLT+ A EL
Sbjct: 129 KGTFLVTQAAAQALVSNGCRGSIINISSIV-GKVGNVGQTNYAASKAGVIGLTQTAAREL 187
Query: 714 APRNIRVNCLAPGLIKTNFSQVLWMDKARKEYMKESLRIRRLGNPEDCAGIVSFLCSEDA 893
IR N + PG I T +Q + K + E + + LG+PED A +V+FL SED+
Sbjct: 188 GRHGIRCNSVLPGFIATPMTQKVPQKVVDK--ITEMIPMGHLGDPEDVADVVAFLASEDS 245
Query: 894 SYI 902
YI
Sbjct: 246 GYI 248
>ref|NP_064524.3| 3-hydroxybutyrate dehydrogenase type 2 [Homo sapiens].
Length = 245
Score = 83.6 bits (205), Expect = 4e-16
Identities = 62/242 (25%), Positives = 116/242 (47%), Gaps = 8/242 (3%)
Frame = +3
Query: 201 LENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRT--VATLQGEGLSVTGTV 374
L+ KV ++TA+ GIG A A A++GA V+ + + + +Q L VT
Sbjct: 4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYPGIQTRVLDVT--- 60
Query: 375 CHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVL 554
+++ + N +D+L N A G ++D E+ WD +++NV++ L
Sbjct: 61 --------KKKQIDQFANEVERLDVLF-NVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYL 111
Query: 555 MTKAVVPEM-EKRXXXXXXXXXXXXAYHPFPNLGPYNVSKTALLGLTKNLAVELAPRNIR 731
M KA +P+M ++ + N Y+ +K A++GLTK++A + + IR
Sbjct: 112 MIKAFLPKMLAQKSGNIINMSSVASSVKGVVNRCVYSTTKAAVIGLTKSVAADFIQQGIR 171
Query: 732 VNCLAPGLIKTNFSQVLWM-----DKARKEYMKESLRIRRLGNPEDCAGIVSFLCSEDAS 896
NC+ PG + T Q ++AR +++K + R E+ A + +L S++++
Sbjct: 172 CNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQ-KTGRFATAEEIAMLCVYLASDESA 230
Query: 897 YI 902
Y+
Sbjct: 231 YV 232
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 55,987,517
Number of extensions: 1743427
Number of successful extensions: 8993
Number of sequences better than 1.0e-05: 43
Number of HSP's gapped: 8629
Number of HSP's successfully gapped: 50
Length of query: 416
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 311
Effective length of database: 14,835,944
Effective search space: 4613978584
Effective search space used: 4613978584
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001686
(1248 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033027.2| dehydrogenase/reductase SDR family member 4 ... 391 e-109
Alignment gi|NP_082066.2| dehydrogenase/reductase member 2 [Mus musculus]. 270 2e-72
Alignment gi|NP_109611.1| dehydrogenase/reductase SDR family member 4 iso... 246 3e-65
Alignment gi|NP_076012.3| peroxisomal trans-2-enoyl-CoA reductase [Mus mu... 102 8e-22
Alignment gi|NP_001165526.1| 3-hydroxybutyrate dehydrogenase type 2 isofo... 82 7e-16
Alignment gi|NP_081484.1| 3-hydroxybutyrate dehydrogenase type 2 isoform ... 82 7e-16
Alignment gi|NP_808232.2| dehydrogenase/reductase SDR family member 11 pr... 82 7e-16
Alignment gi|NP_031647.1| carbonyl reductase [NADPH] 2 [Mus musculus]. 82 9e-16
Alignment gi|NP_038571.2| estradiol 17-beta-dehydrogenase 8 [Mus musculus]. 82 1e-15
Alignment gi|NP_080704.2| L-xylulose reductase [Mus musculus]. 79 1e-14
>ref|NP_001033027.2| dehydrogenase/reductase SDR family member 4 isoform 1 [Mus
musculus].
Length = 279
Score = 391 bits (1005), Expect = e-109
Identities = 197/279 (70%), Positives = 224/279 (80%)
Frame = +3
Query: 111 MRAAGQLLRACSQTWKSVRMASTGVERRKPLENKVALVTASTDGIGLAIARRLAQDGAHV 290
M+ AG+LL +Q W SVRMAS+G+ RR PL NKVALVTASTDGIG AIARRLA+DGAHV
Sbjct: 1 MQKAGRLLGGWTQAWMSVRMASSGLTRRNPLSNKVALVTASTDGIGFAIARRLAEDGAHV 60
Query: 291 VVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAV 470
VVSSRKQ+NVDR VATLQGEGLSVTG VCHVGKAEDRE+L+ A+ H G+DILVSNAAV
Sbjct: 61 VVSSRKQQNVDRAVATLQGEGLSVTGIVCHVGKAEDREKLITTALKRHQGIDILVSNAAV 120
Query: 471 NPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRXXXXXXXXXXXXAYHPFPNL 650
NPFFGN++D TEEVWDK+L +NV AT +M KAVVPEMEKR + FP+L
Sbjct: 121 NPFFGNLMDVTEEVWDKVLSINVTATAMMIKAVVPEMEKRGGGSVVIVGSVAGFTRFPSL 180
Query: 651 GPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQVLWMDKARKEYMKESLRI 830
GPYNVSKTALLGLTKN A ELAP+NIRVNCLAPGLIKT FS VLW +KAR++++KE+++I
Sbjct: 181 GPYNVSKTALLGLTKNFAAELAPKNIRVNCLAPGLIKTRFSSVLWEEKAREDFIKEAMQI 240
Query: 831 RRLGNPEDCAGIVSFLCSEDASYIXXXXXXXXXXXASRL 947
RRLG PEDCAGIVSFLCSEDASYI SRL
Sbjct: 241 RRLGKPEDCAGIVSFLCSEDASYINGETVVVGGGTPSRL 279
>ref|NP_082066.2| dehydrogenase/reductase member 2 [Mus musculus].
Length = 282
Score = 270 bits (689), Expect = 2e-72
Identities = 142/248 (57%), Positives = 169/248 (68%)
Frame = +3
Query: 159 SVRMASTGVERRKPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVAT 338
S R S + + L KVA++T ST GIG AIARRLAQDGAHVV+SSRKQENVD V
Sbjct: 21 SARRFSKTADENRSLAGKVAVITGSTRGIGFAIARRLAQDGAHVVISSRKQENVDEAVTI 80
Query: 339 LQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWD 518
L+ EGLSVTGT+CHVGKAEDR+ LV A+ GG+D LV A VNP G+ + A+E++WD
Sbjct: 81 LKEEGLSVTGTMCHVGKAEDRQHLVTTALKHSGGIDFLVCVAGVNPLVGSTLGASEQIWD 140
Query: 519 KILHVNVKATVLMTKAVVPEMEKRXXXXXXXXXXXXAYHPFPNLGPYNVSKTALLGLTKN 698
KIL VNVK+ L+ V+P ME R AY P P LG YN SKTALLGL K+
Sbjct: 141 KILDVNVKSPALLLSKVLPYMENRRGGSVVLVSSGVAYVPVPKLGVYNTSKTALLGLCKS 200
Query: 699 LAVELAPRNIRVNCLAPGLIKTNFSQVLWMDKARKEYMKESLRIRRLGNPEDCAGIVSFL 878
LAVELAP+ IRVNCL PG+IKT+FS M + ++RLG PE+CAG+VSFL
Sbjct: 201 LAVELAPKGIRVNCLVPGIIKTDFSLREKTMPNMLPDMNKIFGVKRLGEPEECAGLVSFL 260
Query: 879 CSEDASYI 902
CS DASYI
Sbjct: 261 CSSDASYI 268
>ref|NP_109611.1| dehydrogenase/reductase SDR family member 4 isoform 2 [Mus
musculus].
Length = 216
Score = 246 bits (628), Expect = 3e-65
Identities = 122/160 (76%), Positives = 138/160 (86%)
Frame = +3
Query: 111 MRAAGQLLRACSQTWKSVRMASTGVERRKPLENKVALVTASTDGIGLAIARRLAQDGAHV 290
M+ AG+LL +Q W SVRMAS+G+ RR PL NKVALVTASTDGIG AIARRLA+DGAHV
Sbjct: 1 MQKAGRLLGGWTQAWMSVRMASSGLTRRNPLSNKVALVTASTDGIGFAIARRLAEDGAHV 60
Query: 291 VVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAV 470
VVSSRKQ+NVDR VATLQGEGLSVTG VCHVGKAEDRE+L+ A+ H G+DILVSNAAV
Sbjct: 61 VVSSRKQQNVDRAVATLQGEGLSVTGIVCHVGKAEDREKLITTALKRHQGIDILVSNAAV 120
Query: 471 NPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKR 590
NPFFGN++D TEEVWDK+L +NV AT +M KAVVPEMEKR
Sbjct: 121 NPFFGNLMDVTEEVWDKVLSINVTATAMMIKAVVPEMEKR 160
>ref|NP_076012.3| peroxisomal trans-2-enoyl-CoA reductase [Mus musculus].
Length = 303
Score = 102 bits (253), Expect = 8e-22
Identities = 71/241 (29%), Positives = 114/241 (47%), Gaps = 7/241 (2%)
Frame = +3
Query: 201 LENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQ-----GEGLSVT 365
L+N+VA+VT GIG A++R L G +VV++SRK + + V L+ V+
Sbjct: 16 LKNQVAVVTGGGTGIGKAVSRELLHLGCNVVIASRKLDRLTAAVDELRASLPPSSSAEVS 75
Query: 366 GTVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKA 545
C++ K E+ LV + +G ++ LV+N F + D T + W ++ N+
Sbjct: 76 AIQCNIRKEEEVSNLVKSTLAKYGKINFLVNNGG-GQFMAPVEDITAKGWHAVIETNLTG 134
Query: 546 TVLMTKAVVPEMEKRXXXXXXXXXXXXAYHPFPNLGPYNVSKTALLGLTKNLAVELAPRN 725
T M K V R + FP ++ + LTK++A+ A
Sbjct: 135 TFYMCKEVYNSW-MREHGGSIVNIIVLLNNGFPTAAHTGAAREGVYNLTKSMALAWASSG 193
Query: 726 IRVNCLAPGLI--KTNFSQVLWMDKARKEYMKESLRIRRLGNPEDCAGIVSFLCSEDASY 899
+R+NC+APG I +T M + E +S+ +RLG PE+ + +V FL S ASY
Sbjct: 194 VRINCVAPGTIYSQTAVDNYGEMGQTLFEMAFDSIPAKRLGVPEEISPLVCFLLSPAASY 253
Query: 900 I 902
I
Sbjct: 254 I 254
>ref|NP_001165526.1| 3-hydroxybutyrate dehydrogenase type 2 isoform 1 [Mus musculus].
Length = 255
Score = 82.4 bits (202), Expect = 7e-16
Identities = 63/241 (26%), Positives = 118/241 (48%), Gaps = 7/241 (2%)
Frame = +3
Query: 201 LENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDR--TVATLQGEGLSVTGTV 374
L+ KV ++TA+ GIG A A A++GA V+ + + + + +Q L VT
Sbjct: 14 LDGKVIVLTAAAQGIGRASALAFAREGAKVIATDINESKLQELESYRGIQTRVLDVT--- 70
Query: 375 CHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVL 554
++R + + +D+L N A G I+D E+ WD +++NV++ L
Sbjct: 71 --------KKRQIDQFASEIERIDVLF-NVAGFVHHGTILDCEEKDWDFSMNLNVRSMFL 121
Query: 555 MTKAVVPEM-EKRXXXXXXXXXXXXAYHPFPNLGPYNVSKTALLGLTKNLAVELAPRNIR 731
M KA +P+M ++ + N Y+ +K A++GLTK++A + + IR
Sbjct: 122 MIKAFLPKMLAQKSGNIINMSSVASSIKGVENRCVYSATKAAVIGLTKSVAADFIQQGIR 181
Query: 732 VNCLAPGLIKT-NFSQVLWMDKARKEYMKESLRIRRLG---NPEDCAGIVSFLCSEDASY 899
NC+ PG + T + + + KE +K L ++ G + E+ A + +L S++++Y
Sbjct: 182 CNCVCPGTVDTPSLQERIQARDNPKEALKTFLNRQKTGRFASAEEVALLCVYLASDESAY 241
Query: 900 I 902
+
Sbjct: 242 V 242
>ref|NP_081484.1| 3-hydroxybutyrate dehydrogenase type 2 isoform 2 [Mus musculus].
Length = 245
Score = 82.4 bits (202), Expect = 7e-16
Identities = 63/241 (26%), Positives = 118/241 (48%), Gaps = 7/241 (2%)
Frame = +3
Query: 201 LENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDR--TVATLQGEGLSVTGTV 374
L+ KV ++TA+ GIG A A A++GA V+ + + + + +Q L VT
Sbjct: 4 LDGKVIVLTAAAQGIGRASALAFAREGAKVIATDINESKLQELESYRGIQTRVLDVT--- 60
Query: 375 CHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVL 554
++R + + +D+L N A G I+D E+ WD +++NV++ L
Sbjct: 61 --------KKRQIDQFASEIERIDVLF-NVAGFVHHGTILDCEEKDWDFSMNLNVRSMFL 111
Query: 555 MTKAVVPEM-EKRXXXXXXXXXXXXAYHPFPNLGPYNVSKTALLGLTKNLAVELAPRNIR 731
M KA +P+M ++ + N Y+ +K A++GLTK++A + + IR
Sbjct: 112 MIKAFLPKMLAQKSGNIINMSSVASSIKGVENRCVYSATKAAVIGLTKSVAADFIQQGIR 171
Query: 732 VNCLAPGLIKT-NFSQVLWMDKARKEYMKESLRIRRLG---NPEDCAGIVSFLCSEDASY 899
NC+ PG + T + + + KE +K L ++ G + E+ A + +L S++++Y
Sbjct: 172 CNCVCPGTVDTPSLQERIQARDNPKEALKTFLNRQKTGRFASAEEVALLCVYLASDESAY 231
Query: 900 I 902
+
Sbjct: 232 V 232
>ref|NP_808232.2| dehydrogenase/reductase SDR family member 11 precursor [Mus
musculus].
Length = 260
Score = 82.4 bits (202), Expect = 7e-16
Identities = 74/250 (29%), Positives = 117/250 (46%), Gaps = 11/250 (4%)
Frame = +3
Query: 168 MASTGVERRKPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQG 347
M G+ER + +++ALVT ++ GIG A+AR L Q G VV +R N++ A +
Sbjct: 1 MTRAGMERWR---DRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKS 57
Query: 348 EGLSVTGTV----CHVGKAEDRERLVAMAVNLHGGVDILVSNAAV-NPFFGNIIDATEEV 512
G GT+ C + ED + + + H GVDI ++NA + P ++ +
Sbjct: 58 AG--YPGTLIPYRCDLSNEEDILSMFSAVRSQHSGVDICINNAGMARP--DTLLSGSTSG 113
Query: 513 WDKILHVNVKATVLMTKAVVPEMEKR----XXXXXXXXXXXXAYHPFPNLGPYNVSKTAL 680
W + +VNV A + T+ M++R P + Y+ +K A+
Sbjct: 114 WKDMFNVNVLALSICTREAYQSMKERNIDDGHIININSMCGHRVPPQSVIHFYSATKYAV 173
Query: 681 LGLTKNLAVEL--APRNIRVNCLAPGLIKTNFSQVLWMDKARKEYMKESLRIRRLGNPED 854
LT+ L EL A +IR C++PGL++T F+ L DK E I+ L PED
Sbjct: 174 TALTEGLRQELLEAQTHIRATCISPGLVETQFAFKL-HDKDPGEAAATYEHIKCL-RPED 231
Query: 855 CAGIVSFLCS 884
A V ++ S
Sbjct: 232 VAEAVIYVLS 241
>ref|NP_031647.1| carbonyl reductase [NADPH] 2 [Mus musculus].
Length = 244
Score = 82.0 bits (201), Expect = 9e-16
Identities = 66/228 (28%), Positives = 108/228 (47%), Gaps = 4/228 (1%)
Frame = +3
Query: 216 ALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAE 395
ALVT + GIG + L GA VV +R ++ +L E + +G +
Sbjct: 10 ALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDL----VSLAKECPGIEPVCVDLGDWD 65
Query: 396 DRERLVAMAVNLHGGVDILVSNAAV---NPFFGNIIDATEEVWDKILHVNVKATVLMTKA 566
E+ A+ G VD+LV+NAA+ PF ++ T+E +D+ VN+++ +++
Sbjct: 66 ATEK----ALGGIGPVDLLVNNAALVIMQPF----LEVTKEAFDRSFSVNLRSVFQVSQM 117
Query: 567 VVPEMEKRXXXXXXXXXXXXAYH-PFPNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCL 743
V +M R H FPNL Y+ +K A+ LTK +A+EL P IRVN +
Sbjct: 118 VARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSV 177
Query: 744 APGLIKTNFSQVLWMDKARKEYMKESLRIRRLGNPEDCAGIVSFLCSE 887
P ++ T+ + + D +KE +R+ ED + FL S+
Sbjct: 178 NPTVVLTDMGKKVSADPEFARKLKERHPLRKFAEVEDVVNSILFLLSD 225
>ref|NP_038571.2| estradiol 17-beta-dehydrogenase 8 [Mus musculus].
Length = 259
Score = 81.6 bits (200), Expect = 1e-15
Identities = 72/244 (29%), Positives = 107/244 (43%), Gaps = 10/244 (4%)
Frame = +3
Query: 201 LENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTV-- 374
L + +ALVT + GIG AI+ RLA +GA V TV L G S G
Sbjct: 7 LRSALALVTGAGSGIGRAISVRLAAEGAAVAACDLDGAAAQDTVRLLGSPG-SEDGAPRG 65
Query: 375 ------CHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVN 536
V + RL+ +V + A ++ +EE WD+++ VN
Sbjct: 66 KHAAFQADVSQGPAARRLLEEVQACFSRPPSVVVSCAGITRDEFLLHMSEEDWDRVIAVN 125
Query: 537 VKATVLMTKAVVPEMEKRXXXXXXXXXXXXAYHPFPNLGPYNV--SKTALLGLTKNLAVE 710
+K T L+T+A + N+G N SK ++GLT+ A E
Sbjct: 126 LKGTFLVTQAAAQALVSSGGRGSIINISSII-GKVGNIGQTNYASSKAGVIGLTQTAARE 184
Query: 711 LAPRNIRVNCLAPGLIKTNFSQVLWMDKARKEYMKESLRIRRLGNPEDCAGIVSFLCSED 890
L IR N + PG I T +Q M + K+ + + + +G+PED A +V+FL SED
Sbjct: 185 LGRHGIRCNSVLPGFIATPMTQK--MPEKVKDKVTAMIPLGHMGDPEDVADVVAFLASED 242
Query: 891 ASYI 902
+ YI
Sbjct: 243 SGYI 246
>ref|NP_080704.2| L-xylulose reductase [Mus musculus].
Length = 244
Score = 78.6 bits (192), Expect = 1e-14
Identities = 69/232 (29%), Positives = 106/232 (45%), Gaps = 4/232 (1%)
Frame = +3
Query: 201 LENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCH 380
L + ALVT + GIG + L GA VV SR +E++D V G V
Sbjct: 5 LAGRRALVTGAGKGIGRSTVLALKAAGAQVVAVSRTREDLDDLVRECPG----VEPVCVD 60
Query: 381 VGKAEDRERLVAMAVNLHGGVDILVSNAAV---NPFFGNIIDATEEVWDKILHVNVKATV 551
+ E E+ A++ G VD+LV+NAAV PF ++ T+E D +VN++A +
Sbjct: 61 LADWEATEQ----ALSNVGPVDLLVNNAAVALLQPF----LEVTKEACDTSFNVNLRAVI 112
Query: 552 LMTKAVVPEMEKRXXXXXXXXXXXXA-YHPFPNLGPYNVSKTALLGLTKNLAVELAPRNI 728
+++ V M R A N Y +K AL LTK +A+EL P I
Sbjct: 113 QVSQIVAKGMIARGVPGAIVNVSSQASQRALTNHTVYCSTKGALDMLTKMMALELGPHKI 172
Query: 729 RVNCLAPGLIKTNFSQVLWMDKARKEYMKESLRIRRLGNPEDCAGIVSFLCS 884
RVN + P ++ T + W D + + M + + + + E+ + FL S
Sbjct: 173 RVNAVNPTVVMTPMGRTNWSDPHKAKAMLDRIPLGKFAEVENVVDTILFLLS 224
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 47,002,811
Number of extensions: 1435740
Number of successful extensions: 6854
Number of sequences better than 1.0e-05: 36
Number of HSP's gapped: 6556
Number of HSP's successfully gapped: 36
Length of query: 416
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 312
Effective length of database: 12,493,815
Effective search space: 3898070280
Effective search space used: 3898070280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001686
(1248 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999184.1| dehydrogenase/reductase SDR family member 4 [Su... 457 e-129
Alignment gi|XP_001927120.1| PREDICTED: carbonyl reductase family member ... 87 1e-17
Alignment gi|NP_998992.1| carbonyl reductase [NADPH] 2 [Sus scrofa]. 87 2e-17
Alignment gi|NP_001124202.1| estradiol 17-beta-dehydrogenase 8 [Sus scrof... 84 2e-16
Alignment gi|XP_003357106.1| PREDICTED: 3-hydroxybutyrate dehydrogenase t... 82 5e-16
Alignment gi|XP_003129333.2| PREDICTED: 3-hydroxybutyrate dehydrogenase t... 82 5e-16
Alignment gi|XP_003131752.1| PREDICTED: dehydrogenase/reductase SDR famil... 76 4e-14
Alignment gi|NP_001177161.1| 2,4-dienoyl-CoA reductase, mitochondrial [Su... 71 1e-12
Alignment gi|XP_003130670.1| PREDICTED: testosterone 17-beta-dehydrogenas... 70 2e-12
Alignment gi|XP_003123297.1| PREDICTED: LOW QUALITY PROTEIN: retinol dehy... 70 3e-12
>ref|NP_999184.1| dehydrogenase/reductase SDR family member 4 [Sus scrofa].
Length = 260
Score = 457 bits (1176), Expect = e-129
Identities = 237/260 (91%), Positives = 237/260 (91%)
Frame = +3
Query: 168 MASTGVERRKPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQG 347
MASTGVERRKPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQG
Sbjct: 1 MASTGVERRKPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQG 60
Query: 348 EGLSVTGTVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKIL 527
EGLSVTGTVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKIL
Sbjct: 61 EGLSVTGTVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKIL 120
Query: 528 HVNVKATVLMTKAVVPEMEKRXXXXXXXXXXXXAYHPFPNLGPYNVSKTALLGLTKNLAV 707
HVNVKATVLMTKAVVPEMEKR AYHPFPNLGPYNVSKTALLGLTKNLAV
Sbjct: 121 HVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTKNLAV 180
Query: 708 ELAPRNIRVNCLAPGLIKTNFSQVLWMDKARKEYMKESLRIRRLGNPEDCAGIVSFLCSE 887
ELAPRNIRVNCLAPGLIKTNFSQVLWMDKARKEYMKESLRIRRLGNPEDCAGIVSFLCSE
Sbjct: 181 ELAPRNIRVNCLAPGLIKTNFSQVLWMDKARKEYMKESLRIRRLGNPEDCAGIVSFLCSE 240
Query: 888 DASYIXXXXXXXXXXXASRL 947
DASYI ASRL
Sbjct: 241 DASYITGETVVVGGGTASRL 260
>ref|XP_001927120.1| PREDICTED: carbonyl reductase family member 4-like [Sus scrofa].
Length = 237
Score = 87.4 bits (215), Expect = 1e-17
Identities = 64/224 (28%), Positives = 110/224 (49%)
Frame = +3
Query: 207 NKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVG 386
++V V + GIG A+AR +AQ G + + +R + L G+ L+++ C V
Sbjct: 2 DRVCAVFGGSRGIGRAVARLMAQRGYRLAIVARNLQGARAVAGDLGGDHLALS---CDVA 58
Query: 387 KAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKA 566
K +D + G V+ LV+ A +N + +TE++ + L N+ ++L KA
Sbjct: 59 KEQDVQSTFEEIEKNLGPVNFLVNAAGINRDNLLVRTSTEDMLCQ-LQTNLLGSMLTCKA 117
Query: 567 VVPEMEKRXXXXXXXXXXXXAYHPFPNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLA 746
V M K+ P Y+ SK L+G ++ LA E+A + IRVN +A
Sbjct: 118 AVKTMIKQQGGSIVNIGSVVGLKGNPGQSVYSASKGGLVGFSRALAKEVAKKKIRVNVVA 177
Query: 747 PGLIKTNFSQVLWMDKARKEYMKESLRIRRLGNPEDCAGIVSFL 878
PG + T+ ++ L ++E++K ++ + R G+P D A V FL
Sbjct: 178 PGFVHTDMTKDL-----KEEHLKSNIPLGRFGDPLDVAHAVLFL 216
>ref|NP_998992.1| carbonyl reductase [NADPH] 2 [Sus scrofa].
Length = 244
Score = 87.0 bits (214), Expect = 2e-17
Identities = 69/228 (30%), Positives = 109/228 (47%), Gaps = 4/228 (1%)
Frame = +3
Query: 216 ALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAE 395
ALVT + GIG + L GA VV +R ++ +L E + +G E
Sbjct: 10 ALVTGAGKGIGRDTVKALHVSGARVVAVTRTNGDL----VSLSQECPGIEPVCVDLGDWE 65
Query: 396 DRERLVAMAVNLHGGVDILVSNAAV---NPFFGNIIDATEEVWDKILHVNVKATVLMTKA 566
ER A+ G VD+LV+NAAV PF +D T+EV+D+ +VN+++ +++
Sbjct: 66 ATER----ALGGVGPVDLLVNNAAVALMQPF----LDTTKEVFDRSFNVNLRSVFQVSQI 117
Query: 567 VVPEMEKRXXXXXXXXXXXXAYH-PFPNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCL 743
V M +R H +P L Y+ +K A+ LTK++A+EL P IRVN +
Sbjct: 118 VARSMIERGVPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMAMELGPHKIRVNSV 177
Query: 744 APGLIKTNFSQVLWMDKARKEYMKESLRIRRLGNPEDCAGIVSFLCSE 887
P ++ T + + D +KE +R+ ED + FL S+
Sbjct: 178 NPTVVLTAMGRSVTSDPELARKLKERHPMRKFAEVEDVVNSILFLLSD 225
>ref|NP_001124202.1| estradiol 17-beta-dehydrogenase 8 [Sus scrofa].
Length = 259
Score = 83.6 bits (205), Expect = 2e-16
Identities = 72/243 (29%), Positives = 107/243 (44%), Gaps = 9/243 (3%)
Frame = +3
Query: 201 LENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSV------ 362
L + +ALVT + GIG A++ RLA +GA V TV L G G
Sbjct: 7 LRSALALVTGAGSGIGRAVSVRLAAEGAAVAACDLDGAAAQETVQLLGGPGSEKGAPSGA 66
Query: 363 -TGTVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNV 539
V +AE RL+ +V + A ++ +E+ WDK++ VN+
Sbjct: 67 HAAFQADVSEAETARRLLEQVQAYFFRPPSVVVSCAGITRDEFLLRMSEDDWDKVIAVNL 126
Query: 540 KATVLMTKAVVPEMEKRXXXXXXXXXXXXAYHPFPNLGP--YNVSKTALLGLTKNLAVEL 713
K L+T+A + N+G Y SK ++GLT+ +A EL
Sbjct: 127 KGIFLVTQAAAQALVSSGCPGSIINISSII-GKVGNMGQTNYAASKAGVIGLTQAVAREL 185
Query: 714 APRNIRVNCLAPGLIKTNFSQVLWMDKARKEYMKESLRIRRLGNPEDCAGIVSFLCSEDA 893
IR N + PG IKT +Q + K + + + LG+PED A +V+FL SED+
Sbjct: 186 GRYRIRCNSVLPGFIKTPMAQKVPQKVLDK--VVGMIPMGHLGDPEDVADVVAFLASEDS 243
Query: 894 SYI 902
YI
Sbjct: 244 GYI 246
>ref|XP_003357106.1| PREDICTED: 3-hydroxybutyrate dehydrogenase type 2-like isoform 2
[Sus scrofa].
Length = 245
Score = 82.4 bits (202), Expect = 5e-16
Identities = 66/242 (27%), Positives = 114/242 (47%), Gaps = 8/242 (3%)
Frame = +3
Query: 201 LENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDR--TVATLQGEGLSVTGTV 374
L+ KV ++TA+ GIG A A A++GA V+ + + + +Q L VT
Sbjct: 4 LDGKVIILTAAAQGIGRAAALAFAREGAKVIATDINESKLQELENYPGIQTRVLDVTKKK 63
Query: 375 CHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVL 554
A D ERL D+L N A G I+D E+ WD +++NV++ L
Sbjct: 64 QIDEFANDIERL-----------DVLF-NVAGFVHHGTILDCEEKDWDFSMNLNVRSMYL 111
Query: 555 MTKAVVPEM-EKRXXXXXXXXXXXXAYHPFPNLGPYNVSKTALLGLTKNLAVELAPRNIR 731
M KA +P+M ++ + N Y+ +K A++GLTK++A + + IR
Sbjct: 112 MIKAFLPKMLAQKSGNIINMSSVASSIKGVVNRCVYSATKAAVIGLTKSVAADFIQQGIR 171
Query: 732 VNCLAPGLIKTNFSQVLWM-----DKARKEYMKESLRIRRLGNPEDCAGIVSFLCSEDAS 896
NC+ PG + T Q ++A +++K + R E+ A + +L S++++
Sbjct: 172 CNCVCPGTVDTPSLQERIQARPNPEEALSDFLKRQ-KTGRFATAEEVALLCVYLASDESA 230
Query: 897 YI 902
Y+
Sbjct: 231 YV 232
>ref|XP_003129333.2| PREDICTED: 3-hydroxybutyrate dehydrogenase type 2-like isoform 1
[Sus scrofa].
Length = 245
Score = 82.4 bits (202), Expect = 5e-16
Identities = 66/242 (27%), Positives = 114/242 (47%), Gaps = 8/242 (3%)
Frame = +3
Query: 201 LENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDR--TVATLQGEGLSVTGTV 374
L+ KV ++TA+ GIG A A A++GA V+ + + + +Q L VT
Sbjct: 4 LDGKVIILTAAAQGIGRAAALAFAREGAKVIATDINESKLQELENYPGIQTRVLDVTKKK 63
Query: 375 CHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVL 554
A D ERL D+L N A G I+D E+ WD +++NV++ L
Sbjct: 64 QIDEFANDIERL-----------DVLF-NVAGFVHHGTILDCEEKDWDFSMNLNVRSMYL 111
Query: 555 MTKAVVPEM-EKRXXXXXXXXXXXXAYHPFPNLGPYNVSKTALLGLTKNLAVELAPRNIR 731
M KA +P+M ++ + N Y+ +K A++GLTK++A + + IR
Sbjct: 112 MIKAFLPKMLAQKSGNIINMSSVASSIKGVVNRCVYSATKAAVIGLTKSVAADFIQQGIR 171
Query: 732 VNCLAPGLIKTNFSQVLWM-----DKARKEYMKESLRIRRLGNPEDCAGIVSFLCSEDAS 896
NC+ PG + T Q ++A +++K + R E+ A + +L S++++
Sbjct: 172 CNCVCPGTVDTPSLQERIQARPNPEEALSDFLKRQ-KTGRFATAEEVALLCVYLASDESA 230
Query: 897 YI 902
Y+
Sbjct: 231 YV 232
>ref|XP_003131752.1| PREDICTED: dehydrogenase/reductase SDR family member 11-like [Sus
scrofa].
Length = 330
Score = 75.9 bits (185), Expect = 4e-14
Identities = 74/269 (27%), Positives = 124/269 (46%), Gaps = 13/269 (4%)
Frame = +3
Query: 6 SGMRSCAGTRLAPPPPLVLFCQLPWAGLALEPGLHMRAAGQLL--RACSQTWKSVRMAST 179
S RS GTRLA LV + + + + + ++ + R + TW
Sbjct: 22 SSRRSYDGTRLAAGSALVTRERPGPSDVGRSSAIQVPSSPSEVGGRLGTLTW-------A 74
Query: 180 GVERRKPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLS 359
G+ER + ++ALVT ++ GIG A+AR L Q G VV +R N++ A + G
Sbjct: 75 GMERWR---GRLALVTGASGGIGAAVARALVQHGLKVVGCARTVGNIEELAAECKSAG-- 129
Query: 360 VTGTV----CHVGKAEDRERLVAMAVNLHGGVDILVSNAAV-NPFFGNIIDATEEVWDKI 524
GT+ C + ED + + + H GVDI ++NA + P +++ + W +
Sbjct: 130 YPGTLIPYKCDLSNEEDILSMFSAIRSQHSGVDICINNAGLARP--DSLLSGSTSGWKDM 187
Query: 525 LHVNVKATVLMTKAVVPEM-EKRXXXXXXXXXXXXAYH---PFPNLGPYNVSKTALLGLT 692
+VNV A + T+ M E++ + H P Y+ +K A+ LT
Sbjct: 188 FNVNVLALSICTREAYQSMRERKVDDGHIININSMSGHRVVPQSVAHFYSATKYAVTALT 247
Query: 693 KNLAVEL--APRNIRVNCLAPGLIKTNFS 773
+ L EL A +IR C++PG+++T F+
Sbjct: 248 EGLRQELREAQTHIRATCISPGVVETQFA 276
>ref|NP_001177161.1| 2,4-dienoyl-CoA reductase, mitochondrial [Sus scrofa].
Length = 328
Score = 71.2 bits (173), Expect = 1e-12
Identities = 69/245 (28%), Positives = 114/245 (46%), Gaps = 12/245 (4%)
Frame = +3
Query: 204 ENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHV 383
+ K+A +T GIG + L+ GA V++SR N+D AT + E S TG H
Sbjct: 51 QGKLAFITGGGTGIGKRMTTHLSSLGAQCVIASR---NIDILKATAE-EISSQTGNKVHA 106
Query: 384 GKAEDRE-----RLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEV----WDKILHVN 536
+ + R+ V+ + + G DI+++NAA GN I +E + W I +
Sbjct: 107 IQCDVRDPNMVQNTVSELIKVIGHPDIVINNAA-----GNFISPSERLSPNAWKTITDIV 161
Query: 537 VKATVLMTKAVVPEMEK-RXXXXXXXXXXXXAYHPFPNLGPYNVSKTALLGLTKNLAVEL 713
+ T +T + ++ K + A + P +K + ++K+LA E
Sbjct: 162 LNGTAFVTLEIGKQLIKAQKGAAFLAITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEW 221
Query: 714 APRNIRVNCLAPGLIKTN--FSQVLWMDKARKEYMKESLRIRRLGNPEDCAGIVSFLCSE 887
+ +R N + PG IKT FS++ KE M + + RLG E+ A + +FLCS+
Sbjct: 222 SKYGMRFNVIQPGPIKTKGAFSRLDPTGAFEKE-MIDRIPCGRLGTVEELANLATFLCSD 280
Query: 888 DASYI 902
AS+I
Sbjct: 281 YASWI 285
>ref|XP_003130670.1| PREDICTED: testosterone 17-beta-dehydrogenase 3-like [Sus scrofa].
Length = 310
Score = 70.5 bits (171), Expect = 2e-12
Identities = 61/222 (27%), Positives = 100/222 (45%), Gaps = 8/222 (3%)
Frame = +3
Query: 216 ALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGE-GLSVTGTVCHVGKA 392
A++T + DGIG A + LA+ G +VV+ SR E + A ++ G SV K
Sbjct: 51 AVITGAGDGIGKAYSFELARQGLNVVLISRTLEKLQTIAAEIEWTIGTSVKIIQADFTKD 110
Query: 393 EDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDA----TEEVWDKILHVNVKATVLMT 560
+ E + L G ILV+N + P N++ + T + ++H N+ + V MT
Sbjct: 111 DIYEDIKEKLKGLEIG--ILVNNVGMLP---NLLPSHFLNTPDNIQSVIHCNITSVVKMT 165
Query: 561 KAVVPEMEKRXXXXXXXXXXXXAYHPFPNLGPYNVSKTALLGLTKNLAVELAPRNIRVNC 740
+ ++ ME R A P+P Y+ SK + +K L E + I +
Sbjct: 166 QLILKHMESRQKGLILNISSGVALFPWPLYSMYSSSKAFVCTFSKALQAEYEAKGIIIQV 225
Query: 741 LAPGLIK---TNFSQVLWMDKARKEYMKESLRIRRLGNPEDC 857
L P + TN+ + K E++KESL+ +G+ E C
Sbjct: 226 LTPHAVSTQMTNYLNTNMITKTADEFVKESLKYVTIGD-ETC 266
>ref|XP_003123297.1| PREDICTED: LOW QUALITY PROTEIN: retinol dehydrogenase 8-like [Sus
scrofa].
Length = 332
Score = 69.7 bits (169), Expect = 3e-12
Identities = 61/224 (27%), Positives = 97/224 (43%), Gaps = 5/224 (2%)
Frame = +3
Query: 153 WKSVRMASTGVERRKPLENKVALVTASTDGIGLAIARRLAQDGA--HVVVSSRKQENVDR 326
W+ MA T + L++ + GIGL +A +LA+D + VV++ +
Sbjct: 16 WEGXNMADTP---------RTVLISGCSSGIGLELAVQLARDPKQRYHVVATMRDLGKKG 66
Query: 327 TVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAVN---PFFGNIID 497
T+ GE L T TV + D ++ G VD+LV+NA V P G +
Sbjct: 67 TLEAAAGEALGQTLTVAQLDVCSDESVAQCLSCIQGGEVDVLVNNAGVGLVGPLEGLSLA 126
Query: 498 ATEEVWDKILHVNVKATVLMTKAVVPEMEKRXXXXXXXXXXXXAYHPFPNLGPYNVSKTA 677
A + V+D N V + KAV+P M++R Y SK A
Sbjct: 127 AMQNVFD----TNFFGAVRLVKAVLPGMKRRRQGHIVVVSSVMGLQGVVFNEVYAASKFA 182
Query: 678 LLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQVLWMDKARKEY 809
+ G ++LAV+L NI ++ + PG + T F + L + E+
Sbjct: 183 IEGFFESLAVQLLQFNIFISLVEPGPVATEFERKLLEQVSTAEF 226
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,706,866
Number of extensions: 1158019
Number of successful extensions: 5760
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 5544
Number of HSP's successfully gapped: 26
Length of query: 416
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 315
Effective length of database: 8,829,335
Effective search space: 2781240525
Effective search space used: 2781240525
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001686
(1248 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 640 0.0
>Sscrofa_Chr07
|| Length = 134764511
Score = 640 bits (323), Expect = 0.0
Identities = 346/355 (97%), Gaps = 1/355 (0%)
Strand = Plus / Minus
Query: 834 aggttaggcaatccagaggactgtgcgggcatcgtgtctttcctatgctctgaagatgcc 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80512769 aggttaggcaatccagaggactgtgcgggcatcgtgtctttcctatgctctgaagatgcc 80512710
Query: 894 agctacatcactggggagacagtggtagtgggtggagggaccgcatcccgcctctgagga 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80512709 agctacatcactggggagacagtggtagtgggtggagggaccgcatcccgcctctgagga 80512650
Query: 954 cctggagagcatccaccagggcagagattgggctccagctcctgttccagcattcatcaa 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80512649 cctggagagcatccaccagggcagagattgggctccagctcctgttccagcattcatcaa 80512590
Query: 1014 ctggtttcccacctctgcctagcattctgctcacaatacaccataacccctacccannnn 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80512589 ctggtttcccacctctgcctagcattctgctcacaatacaccataacccctacccacccc 80512530
Query: 1074 nnnnaaatcagttctgccctgtgaaaagagccagcgtccttgtcctctgctgtcaagctg 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80512529 ccccaaatcagttctgccctgtgaaaagagccagcgtccttgtcctctgctgtcaagctg 80512470
Query: 1134 tggtctaatgaggattttccctgttgctgtagccttcaat-aagacctcccctga 1187
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 80512469 tggtctaatgaggattttccctgttgctgtagccttcaataaagacctcccctga 80512415
Score = 418 bits (211), Expect = e-114
Identities = 236/243 (97%), Gaps = 1/243 (0%)
Strand = Plus / Minus
Query: 1 ctgggagcggaatgcgcagctgcgcggggacgcggctcgccccacccccgccgctggttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80525829 ctgggagcggaatgcgcagctgcgcggggacgcggctcgccccacccccgccgctggttc 80525770
Query: 61 tattttgtcaacttccctgggcgggactggccttggaacctggtctgca-catgcgggcg 119
||||||||||||||||||||||||||| | || |||||||||||||| ||||||||||
Sbjct: 80525769 tattttgtcaacttccctgggcgggacagaactcagaacctggtctgcaacatgcgggcg 80525710
Query: 120 gcggggcagttactgagggcctgttcccagacgtggaagtcggtgcggatggccagcacc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80525709 gcggggcagttactgagggcctgttcccagacgtggaagtcggtgcggatggccagcacc 80525650
Query: 180 ggggtggagcgccgaaaaccgctggagaataaggtggcactagtaacagcctccactgac 239
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 80525649 ggggtggagcgccgaaaaccgctcgagaataaggtggcactagtaacagcctccactgac 80525590
Query: 240 ggg 242
|||
Sbjct: 80525589 ggg 80525587
Score = 357 bits (180), Expect = 9e-96
Identities = 180/180 (100%)
Strand = Plus / Minus
Query: 241 ggatcggcctcgccatcgcccggcgtctggcccaggatggggcccacgtggtggtcagca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80524165 ggatcggcctcgccatcgcccggcgtctggcccaggatggggcccacgtggtggtcagca 80524106
Query: 301 gccggaagcaggagaatgtggaccggacagtggcaacactgcagggggaggggctgagcg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80524105 gccggaagcaggagaatgtggaccggacagtggcaacactgcagggggaggggctgagcg 80524046
Query: 361 tgacgggcaccgtgtgccacgtggggaaggccgaggaccgggagcgactggtggccatgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80524045 tgacgggcaccgtgtgccacgtggggaaggccgaggaccgggagcgactggtggccatgg 80523986
Score = 268 bits (135), Expect = 7e-69
Identities = 135/135 (100%)
Strand = Plus / Minus
Query: 645 aatctgggcccttacaatgttagtaaaacagccttgctgggcctcaccaagaacctggcc 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80515521 aatctgggcccttacaatgttagtaaaacagccttgctgggcctcaccaagaacctggcc 80515462
Query: 705 gtagagctggccccaaggaacattagggtgaactgcctggcgcctggactcatcaagact 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80515461 gtagagctggccccaaggaacattagggtgaactgcctggcgcctggactcatcaagact 80515402
Query: 765 aacttcagccaggtg 779
|||||||||||||||
Sbjct: 80515401 aacttcagccaggtg 80515387
Score = 204 bits (103), Expect = 8e-50
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 419 ggctgtgaaccttcacgggggcgtggacatcctggtctccaatgcagccgtcaacccatt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80518721 ggctgtgaaccttcacgggggcgtggacatcctggtctccaatgcagccgtcaacccatt 80518662
Query: 479 ctttggaaacatcatagatgccactgaggaggtgtgggacaag 521
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80518661 ctttggaaacatcatagatgccactgaggaggtgtgggacaag 80518619
Score = 145 bits (73), Expect = 7e-32
Identities = 73/73 (100%)
Strand = Plus / Minus
Query: 520 agattctgcacgttaacgtgaaggccacagtcctgatgacaaaggcagtggtgccggaga 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80516273 agattctgcacgttaacgtgaaggccacagtcctgatgacaaaggcagtggtgccggaga 80516214
Query: 580 tggagaaacgagg 592
|||||||||||||
Sbjct: 80516213 tggagaaacgagg 80516201
Score = 139 bits (70), Expect = 4e-30
Identities = 134/154 (87%), Gaps = 1/154 (0%)
Strand = Plus / Minus
Query: 265 gtctggcccaggatggggcccacgtggtggtcagcagcc-ggaagcaggagaatgtggac 323
|||||||||| ||||| ||||| ||| ||||||||||| |||||||| |||||||||||
Sbjct: 80618622 gtctggcccaagatggagcccatatggcggtcagcagccaggaagcagcagaatgtggac 80618563
Query: 324 cggacagtggcaacactgcagggggaggggctgagcgtgacgggcaccgtgtgccacgtg 383
| | ||||||||| |||||||||||||||||||||||||| ||| ||||||||| ||
Sbjct: 80618562 caggcagtggcaatgctgcagggggaggggctgagcgtgacaagcagggtgtgccacctg 80618503
Query: 384 gggaaggccgaggaccgggagcgactggtggcca 417
||||||| | |||||| |||||| ||||||||||
Sbjct: 80618502 gggaaggtcaaggaccaggagcggctggtggcca 80618469
Score = 117 bits (59), Expect = 2e-23
Identities = 59/59 (100%)
Strand = Plus / Minus
Query: 779 gttgtggatggataaggcaagaaaggagtacatgaaagaaagcttgcgaatcagaaggt 837
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80514946 gttgtggatggataaggcaagaaaggagtacatgaaagaaagcttgcgaatcagaaggt 80514888
Score = 97.6 bits (49), Expect = 1e-17
Identities = 52/53 (98%)
Strand = Plus / Minus
Query: 592 gaggcggctcagtgttgatcgtgtcctccgttggagcctaccacccatttccc 644
|||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 80515846 gaggcggctcagtgttgatcgtatcctccgttggagcctaccacccatttccc 80515794
Score = 61.9 bits (31), Expect = 8e-07
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 265 gtctggcccaggatggggcccacgtggtggtcagcagcc 303
|||||||||||||||||||||||| || |||||||||||
Sbjct: 80812246 gtctggcccaggatggggcccacgcggaggtcagcagcc 80812208
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,311,535
Number of extensions: 179
Number of successful extensions: 179
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 11
Length of query: 1248
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1227
Effective length of database: 2,808,413,156
Effective search space: 3445922942412
Effective search space used: 3445922942412
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)