Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001711
(1025 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001015648.1| OCIA domain-containing protein 1 [Bos taurus]. 495 e-140
Alignment gi|NP_001029430.1| OCIA domain-containing protein 2 [Bos taurus]. 89 6e-18
>ref|NP_001015648.1| OCIA domain-containing protein 1 [Bos taurus].
Length = 247
Score = 495 bits (1274), Expect = e-140
Identities = 236/247 (95%), Positives = 244/247 (98%)
Frame = +1
Query: 196 MSGRAEFREPNAEVPRPIPHIGADYIPTEEERRVFAECNDESFWFRSVPLAATSMLITQG 375
M+GRA+FREPNAEVPRPIPHIGADYIPTEEERRVFAECNDESFWFRSVPLAATSMLITQG
Sbjct: 1 MNGRADFREPNAEVPRPIPHIGADYIPTEEERRVFAECNDESFWFRSVPLAATSMLITQG 60
Query: 376 LISKGILSSHPRYGSIPKLIFACIMGYFAGKLSYVKTCQEKFKNLENSPLGEALRSGQAR 555
LISKGILSSHP+YGSIPKLIFACIMGYFAGKLSYVKTCQEKFKNLENSPLGEALRSGQAR
Sbjct: 61 LISKGILSSHPKYGSIPKLIFACIMGYFAGKLSYVKTCQEKFKNLENSPLGEALRSGQAR 120
Query: 556 RSSPTGHYSQKSRYDSNVSGHSSFATSPAADNIEKEMLPHYEPIPFSASMNESAPTGITD 735
RSSPTGHYSQ+S+YDSNVSGHSSF TSPAADN+EKEMLPHYEPIPFSAS+NES PTGITD
Sbjct: 121 RSSPTGHYSQRSKYDSNVSGHSSFGTSPAADNLEKEMLPHYEPIPFSASLNESTPTGITD 180
Query: 736 HIAQGPDPNIEESPKRKNVTYEELRNKNRESYEVTLTHKTDPSVRPMQERMPKKEVKVNK 915
HIAQGPDPN EESPKRKN+TYEELRNKNRESYEVTLTHKTDPSVRPMQERMPKKEVKVNK
Sbjct: 181 HIAQGPDPNTEESPKRKNITYEELRNKNRESYEVTLTHKTDPSVRPMQERMPKKEVKVNK 240
Query: 916 YGDTWDE 936
YGDTWDE
Sbjct: 241 YGDTWDE 247
>ref|NP_001029430.1| OCIA domain-containing protein 2 [Bos taurus].
Length = 154
Score = 89.0 bits (219), Expect = 6e-18
Identities = 40/96 (41%), Positives = 59/96 (61%)
Frame = +1
Query: 268 YIPTEEERRVFAECNDESFWFRSVPLAATSMLITQGLISKGILSSHPRYGSIPKLIFACI 447
+I E ++ EC +ESFW R++P + SML+TQGL+ G L+++PR+GS+PK+ A I
Sbjct: 33 HIHRSEISKIIRECQEESFWKRALPFSLVSMLVTQGLVHHGYLAANPRFGSLPKVALAGI 92
Query: 448 MGYFAGKLSYVKTCQEKFKNLENSPLGEALRSGQAR 555
+G+ GK SY+ CQ KF + E G G R
Sbjct: 93 LGFGLGKASYIGVCQSKFHSFEGQLRGAGFGPGHNR 128
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,970,032
Number of extensions: 922858
Number of successful extensions: 3461
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3448
Number of HSP's successfully gapped: 2
Length of query: 341
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 238
Effective length of database: 14,273,310
Effective search space: 3397047780
Effective search space used: 3397047780
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001711
(1025 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_859227.1| PREDICTED: similar to OCIA domain containing 1 ... 491 e-139
Alignment gi|XP_859188.1| PREDICTED: similar to OCIA domain containing 1 ... 491 e-139
Alignment gi|XP_849588.1| PREDICTED: similar to OCIA domain containing 1 ... 491 e-139
Alignment gi|XP_859269.1| PREDICTED: similar to OCIA domain containing 1 ... 367 e-102
Alignment gi|XP_532370.1| PREDICTED: similar to OCIA domain containing 1 ... 367 e-101
>ref|XP_859227.1| PREDICTED: similar to OCIA domain containing 1 isoform 4 [Canis
familiaris].
Length = 247
Score = 491 bits (1265), Expect = e-139
Identities = 235/247 (95%), Positives = 244/247 (98%)
Frame = +1
Query: 196 MSGRAEFREPNAEVPRPIPHIGADYIPTEEERRVFAECNDESFWFRSVPLAATSMLITQG 375
M+GRA+FREPNAEVPRPIPHIGADYIPTEEERRVFAECNDESFWFRSVPLAATSMLITQG
Sbjct: 1 MNGRADFREPNAEVPRPIPHIGADYIPTEEERRVFAECNDESFWFRSVPLAATSMLITQG 60
Query: 376 LISKGILSSHPRYGSIPKLIFACIMGYFAGKLSYVKTCQEKFKNLENSPLGEALRSGQAR 555
LISKGILSSHP+YGSIPKLIFACIMGYFAGKLSYVKTCQEKFKNLENSPLGEALRSGQAR
Sbjct: 61 LISKGILSSHPKYGSIPKLIFACIMGYFAGKLSYVKTCQEKFKNLENSPLGEALRSGQAR 120
Query: 556 RSSPTGHYSQKSRYDSNVSGHSSFATSPAADNIEKEMLPHYEPIPFSASMNESAPTGITD 735
RSSP+GHYSQKS+YDSNVSGHSSF TSPAAD++EKEMLPHYEPIPFSASMNES PTGITD
Sbjct: 121 RSSPSGHYSQKSKYDSNVSGHSSFVTSPAADDLEKEMLPHYEPIPFSASMNESTPTGITD 180
Query: 736 HIAQGPDPNIEESPKRKNVTYEELRNKNRESYEVTLTHKTDPSVRPMQERMPKKEVKVNK 915
HIAQGPDPN EESPKRKN+TYEELRNKNRESYEVTLTHKTDPSVRPMQER+PKKEVKVNK
Sbjct: 181 HIAQGPDPNPEESPKRKNITYEELRNKNRESYEVTLTHKTDPSVRPMQERVPKKEVKVNK 240
Query: 916 YGDTWDE 936
YGDTWDE
Sbjct: 241 YGDTWDE 247
>ref|XP_859188.1| PREDICTED: similar to OCIA domain containing 1 isoform 3 [Canis
familiaris].
Length = 247
Score = 491 bits (1265), Expect = e-139
Identities = 235/247 (95%), Positives = 244/247 (98%)
Frame = +1
Query: 196 MSGRAEFREPNAEVPRPIPHIGADYIPTEEERRVFAECNDESFWFRSVPLAATSMLITQG 375
M+GRA+FREPNAEVPRPIPHIGADYIPTEEERRVFAECNDESFWFRSVPLAATSMLITQG
Sbjct: 1 MNGRADFREPNAEVPRPIPHIGADYIPTEEERRVFAECNDESFWFRSVPLAATSMLITQG 60
Query: 376 LISKGILSSHPRYGSIPKLIFACIMGYFAGKLSYVKTCQEKFKNLENSPLGEALRSGQAR 555
LISKGILSSHP+YGSIPKLIFACIMGYFAGKLSYVKTCQEKFKNLENSPLGEALRSGQAR
Sbjct: 61 LISKGILSSHPKYGSIPKLIFACIMGYFAGKLSYVKTCQEKFKNLENSPLGEALRSGQAR 120
Query: 556 RSSPTGHYSQKSRYDSNVSGHSSFATSPAADNIEKEMLPHYEPIPFSASMNESAPTGITD 735
RSSP+GHYSQKS+YDSNVSGHSSF TSPAAD++EKEMLPHYEPIPFSASMNES PTGITD
Sbjct: 121 RSSPSGHYSQKSKYDSNVSGHSSFVTSPAADDLEKEMLPHYEPIPFSASMNESTPTGITD 180
Query: 736 HIAQGPDPNIEESPKRKNVTYEELRNKNRESYEVTLTHKTDPSVRPMQERMPKKEVKVNK 915
HIAQGPDPN EESPKRKN+TYEELRNKNRESYEVTLTHKTDPSVRPMQER+PKKEVKVNK
Sbjct: 181 HIAQGPDPNPEESPKRKNITYEELRNKNRESYEVTLTHKTDPSVRPMQERVPKKEVKVNK 240
Query: 916 YGDTWDE 936
YGDTWDE
Sbjct: 241 YGDTWDE 247
>ref|XP_849588.1| PREDICTED: similar to OCIA domain containing 1 isoform 2 [Canis
familiaris].
Length = 247
Score = 491 bits (1265), Expect = e-139
Identities = 235/247 (95%), Positives = 244/247 (98%)
Frame = +1
Query: 196 MSGRAEFREPNAEVPRPIPHIGADYIPTEEERRVFAECNDESFWFRSVPLAATSMLITQG 375
M+GRA+FREPNAEVPRPIPHIGADYIPTEEERRVFAECNDESFWFRSVPLAATSMLITQG
Sbjct: 1 MNGRADFREPNAEVPRPIPHIGADYIPTEEERRVFAECNDESFWFRSVPLAATSMLITQG 60
Query: 376 LISKGILSSHPRYGSIPKLIFACIMGYFAGKLSYVKTCQEKFKNLENSPLGEALRSGQAR 555
LISKGILSSHP+YGSIPKLIFACIMGYFAGKLSYVKTCQEKFKNLENSPLGEALRSGQAR
Sbjct: 61 LISKGILSSHPKYGSIPKLIFACIMGYFAGKLSYVKTCQEKFKNLENSPLGEALRSGQAR 120
Query: 556 RSSPTGHYSQKSRYDSNVSGHSSFATSPAADNIEKEMLPHYEPIPFSASMNESAPTGITD 735
RSSP+GHYSQKS+YDSNVSGHSSF TSPAAD++EKEMLPHYEPIPFSASMNES PTGITD
Sbjct: 121 RSSPSGHYSQKSKYDSNVSGHSSFVTSPAADDLEKEMLPHYEPIPFSASMNESTPTGITD 180
Query: 736 HIAQGPDPNIEESPKRKNVTYEELRNKNRESYEVTLTHKTDPSVRPMQERMPKKEVKVNK 915
HIAQGPDPN EESPKRKN+TYEELRNKNRESYEVTLTHKTDPSVRPMQER+PKKEVKVNK
Sbjct: 181 HIAQGPDPNPEESPKRKNITYEELRNKNRESYEVTLTHKTDPSVRPMQERVPKKEVKVNK 240
Query: 916 YGDTWDE 936
YGDTWDE
Sbjct: 241 YGDTWDE 247
>ref|XP_859269.1| PREDICTED: similar to OCIA domain containing 1 isoform 5 [Canis
familiaris].
Length = 196
Score = 367 bits (943), Expect = e-102
Identities = 187/247 (75%), Positives = 194/247 (78%)
Frame = +1
Query: 196 MSGRAEFREPNAEVPRPIPHIGADYIPTEEERRVFAECNDESFWFRSVPLAATSMLITQG 375
M+GRA+FREPNAEVPRPIPHIGADYIPTEEERRVFAECNDESFWFRSVPLAATSMLITQG
Sbjct: 1 MNGRADFREPNAEVPRPIPHIGADYIPTEEERRVFAECNDESFWFRSVPLAATSMLITQG 60
Query: 376 LISKGILSSHPRYGSIPKLIFACIMGYFAGKLSYVKTCQEKFKNLENSPLGEALRSGQAR 555
LISKGILSSHP+YGSIPKLIFACIMGYFAGKLSYVKTCQEKFKNLENSPLGEALRSGQAR
Sbjct: 61 LISKGILSSHPKYGSIPKLIFACIMGYFAGKLSYVKTCQEKFKNLENSPLGEALRSGQAR 120
Query: 556 RSSPTGHYSQKSRYDSNVSGHSSFATSPAADNIEKEMLPHYEPIPFSASMNESAPTGITD 735
RSSP+GHYSQKS+YDSNVSGHSSF TSPAAD++EKEMLPHYEPIPFSASMNES PTGITD
Sbjct: 121 RSSPSGHYSQKSKYDSNVSGHSSFVTSPAADDLEKEMLPHYEPIPFSASMNESTPTGITD 180
Query: 736 HIAQGPDPNIEESPKRKNVTYEELRNKNRESYEVTLTHKTDPSVRPMQERMPKKEVKVNK 915
HIAQ VKVNK
Sbjct: 181 HIAQ---------------------------------------------------VKVNK 189
Query: 916 YGDTWDE 936
YGDTWDE
Sbjct: 190 YGDTWDE 196
>ref|XP_532370.1| PREDICTED: similar to OCIA domain containing 1 isoform 1 [Canis
familiaris].
Length = 189
Score = 367 bits (941), Expect = e-101
Identities = 176/185 (95%), Positives = 183/185 (98%)
Frame = +1
Query: 196 MSGRAEFREPNAEVPRPIPHIGADYIPTEEERRVFAECNDESFWFRSVPLAATSMLITQG 375
M+GRA+FREPNAEVPRPIPHIGADYIPTEEERRVFAECNDESFWFRSVPLAATSMLITQG
Sbjct: 1 MNGRADFREPNAEVPRPIPHIGADYIPTEEERRVFAECNDESFWFRSVPLAATSMLITQG 60
Query: 376 LISKGILSSHPRYGSIPKLIFACIMGYFAGKLSYVKTCQEKFKNLENSPLGEALRSGQAR 555
LISKGILSSHP+YGSIPKLIFACIMGYFAGKLSYVKTCQEKFKNLENSPLGEALRSGQAR
Sbjct: 61 LISKGILSSHPKYGSIPKLIFACIMGYFAGKLSYVKTCQEKFKNLENSPLGEALRSGQAR 120
Query: 556 RSSPTGHYSQKSRYDSNVSGHSSFATSPAADNIEKEMLPHYEPIPFSASMNESAPTGITD 735
RSSP+GHYSQKS+YDSNVSGHSSF TSPAAD++EKEMLPHYEPIPFSASMNES PTGITD
Sbjct: 121 RSSPSGHYSQKSKYDSNVSGHSSFVTSPAADDLEKEMLPHYEPIPFSASMNESTPTGITD 180
Query: 736 HIAQG 750
HIAQG
Sbjct: 181 HIAQG 185
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,615,844
Number of extensions: 956818
Number of successful extensions: 3665
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3655
Number of HSP's successfully gapped: 5
Length of query: 341
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 238
Effective length of database: 15,440,896
Effective search space: 3674933248
Effective search space used: 3674933248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001711
(1025 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001161726.1| OCIA domain-containing protein 1 isoform 4 [... 469 e-132
Alignment gi|NP_001073308.1| OCIA domain-containing protein 1 isoform 1 [... 465 e-131
Alignment gi|NP_060300.1| OCIA domain-containing protein 1 isoform 1 [Hom... 465 e-131
Alignment gi|NP_001073311.2| OCIA domain-containing protein 1 isoform 2 [... 345 3e-95
Alignment gi|NP_001073309.1| OCIA domain-containing protein 1 isoform 2 [... 345 3e-95
Alignment gi|NP_001073310.1| OCIA domain-containing protein 1 isoform 3 [... 345 5e-95
Alignment gi|NP_001014446.1| OCIA domain-containing protein 2 isoform 1 [... 83 5e-16
Alignment gi|NP_689611.1| OCIA domain-containing protein 2 isoform 2 [Hom... 59 6e-09
>ref|NP_001161726.1| OCIA domain-containing protein 1 isoform 4 [Homo sapiens].
Length = 250
Score = 469 bits (1207), Expect = e-132
Identities = 227/249 (91%), Positives = 237/249 (95%)
Frame = +1
Query: 190 GKMSGRAEFREPNAEVPRPIPHIGADYIPTEEERRVFAECNDESFWFRSVPLAATSMLIT 369
GKM+GRA+FREPNAEVPRPIPHIG DYIPTEEERRVFAECNDESFWFRSVPLAATSMLIT
Sbjct: 4 GKMNGRADFREPNAEVPRPIPHIGPDYIPTEEERRVFAECNDESFWFRSVPLAATSMLIT 63
Query: 370 QGLISKGILSSHPRYGSIPKLIFACIMGYFAGKLSYVKTCQEKFKNLENSPLGEALRSGQ 549
QGLISKGILSSHP+YGSIPKLI ACIMGYFAGKLSYVKTCQEKFK LENSPLGEALRSGQ
Sbjct: 64 QGLISKGILSSHPKYGSIPKLILACIMGYFAGKLSYVKTCQEKFKKLENSPLGEALRSGQ 123
Query: 550 ARRSSPTGHYSQKSRYDSNVSGHSSFATSPAADNIEKEMLPHYEPIPFSASMNESAPTGI 729
ARRSSP GHY QKS+YDS+VSG SSF TSPAADNI EMLPHYEPIPFS+SMNESAPTGI
Sbjct: 124 ARRSSPPGHYYQKSKYDSSVSGQSSFVTSPAADNI--EMLPHYEPIPFSSSMNESAPTGI 181
Query: 730 TDHIAQGPDPNIEESPKRKNVTYEELRNKNRESYEVTLTHKTDPSVRPMQERMPKKEVKV 909
TDHI QGPDPN+EESPKRKN+TYEELRNKNRESYEV+LT KTDPSVRPM ER+PKKEVKV
Sbjct: 182 TDHIVQGPDPNLEESPKRKNITYEELRNKNRESYEVSLTQKTDPSVRPMHERVPKKEVKV 241
Query: 910 NKYGDTWDE 936
NKYGDTWDE
Sbjct: 242 NKYGDTWDE 250
>ref|NP_001073308.1| OCIA domain-containing protein 1 isoform 1 [Homo sapiens].
Length = 245
Score = 465 bits (1196), Expect = e-131
Identities = 225/247 (91%), Positives = 235/247 (95%)
Frame = +1
Query: 196 MSGRAEFREPNAEVPRPIPHIGADYIPTEEERRVFAECNDESFWFRSVPLAATSMLITQG 375
M+GRA+FREPNAEVPRPIPHIG DYIPTEEERRVFAECNDESFWFRSVPLAATSMLITQG
Sbjct: 1 MNGRADFREPNAEVPRPIPHIGPDYIPTEEERRVFAECNDESFWFRSVPLAATSMLITQG 60
Query: 376 LISKGILSSHPRYGSIPKLIFACIMGYFAGKLSYVKTCQEKFKNLENSPLGEALRSGQAR 555
LISKGILSSHP+YGSIPKLI ACIMGYFAGKLSYVKTCQEKFK LENSPLGEALRSGQAR
Sbjct: 61 LISKGILSSHPKYGSIPKLILACIMGYFAGKLSYVKTCQEKFKKLENSPLGEALRSGQAR 120
Query: 556 RSSPTGHYSQKSRYDSNVSGHSSFATSPAADNIEKEMLPHYEPIPFSASMNESAPTGITD 735
RSSP GHY QKS+YDS+VSG SSF TSPAADNI EMLPHYEPIPFS+SMNESAPTGITD
Sbjct: 121 RSSPPGHYYQKSKYDSSVSGQSSFVTSPAADNI--EMLPHYEPIPFSSSMNESAPTGITD 178
Query: 736 HIAQGPDPNIEESPKRKNVTYEELRNKNRESYEVTLTHKTDPSVRPMQERMPKKEVKVNK 915
HI QGPDPN+EESPKRKN+TYEELRNKNRESYEV+LT KTDPSVRPM ER+PKKEVKVNK
Sbjct: 179 HIVQGPDPNLEESPKRKNITYEELRNKNRESYEVSLTQKTDPSVRPMHERVPKKEVKVNK 238
Query: 916 YGDTWDE 936
YGDTWDE
Sbjct: 239 YGDTWDE 245
>ref|NP_060300.1| OCIA domain-containing protein 1 isoform 1 [Homo sapiens].
Length = 245
Score = 465 bits (1196), Expect = e-131
Identities = 225/247 (91%), Positives = 235/247 (95%)
Frame = +1
Query: 196 MSGRAEFREPNAEVPRPIPHIGADYIPTEEERRVFAECNDESFWFRSVPLAATSMLITQG 375
M+GRA+FREPNAEVPRPIPHIG DYIPTEEERRVFAECNDESFWFRSVPLAATSMLITQG
Sbjct: 1 MNGRADFREPNAEVPRPIPHIGPDYIPTEEERRVFAECNDESFWFRSVPLAATSMLITQG 60
Query: 376 LISKGILSSHPRYGSIPKLIFACIMGYFAGKLSYVKTCQEKFKNLENSPLGEALRSGQAR 555
LISKGILSSHP+YGSIPKLI ACIMGYFAGKLSYVKTCQEKFK LENSPLGEALRSGQAR
Sbjct: 61 LISKGILSSHPKYGSIPKLILACIMGYFAGKLSYVKTCQEKFKKLENSPLGEALRSGQAR 120
Query: 556 RSSPTGHYSQKSRYDSNVSGHSSFATSPAADNIEKEMLPHYEPIPFSASMNESAPTGITD 735
RSSP GHY QKS+YDS+VSG SSF TSPAADNI EMLPHYEPIPFS+SMNESAPTGITD
Sbjct: 121 RSSPPGHYYQKSKYDSSVSGQSSFVTSPAADNI--EMLPHYEPIPFSSSMNESAPTGITD 178
Query: 736 HIAQGPDPNIEESPKRKNVTYEELRNKNRESYEVTLTHKTDPSVRPMQERMPKKEVKVNK 915
HI QGPDPN+EESPKRKN+TYEELRNKNRESYEV+LT KTDPSVRPM ER+PKKEVKVNK
Sbjct: 179 HIVQGPDPNLEESPKRKNITYEELRNKNRESYEVSLTQKTDPSVRPMHERVPKKEVKVNK 238
Query: 916 YGDTWDE 936
YGDTWDE
Sbjct: 239 YGDTWDE 245
>ref|NP_001073311.2| OCIA domain-containing protein 1 isoform 2 [Homo sapiens].
Length = 194
Score = 345 bits (886), Expect = 3e-95
Identities = 180/247 (72%), Positives = 186/247 (75%)
Frame = +1
Query: 196 MSGRAEFREPNAEVPRPIPHIGADYIPTEEERRVFAECNDESFWFRSVPLAATSMLITQG 375
M+GRA+FREPNAEVPRPIPHIG DYIPTEEERRVFAECNDESFWFRSVPLAATSMLITQG
Sbjct: 1 MNGRADFREPNAEVPRPIPHIGPDYIPTEEERRVFAECNDESFWFRSVPLAATSMLITQG 60
Query: 376 LISKGILSSHPRYGSIPKLIFACIMGYFAGKLSYVKTCQEKFKNLENSPLGEALRSGQAR 555
LISKGILSSHP+YGSIPKLI ACIMGYFAGKLSYVKTCQEKFK LENSPLGEALRSGQAR
Sbjct: 61 LISKGILSSHPKYGSIPKLILACIMGYFAGKLSYVKTCQEKFKKLENSPLGEALRSGQAR 120
Query: 556 RSSPTGHYSQKSRYDSNVSGHSSFATSPAADNIEKEMLPHYEPIPFSASMNESAPTGITD 735
RSSP GHY QKS+YDS+VSG SSF TSPAADNI EMLPHYEPIPFS+SMNESAPTGITD
Sbjct: 121 RSSPPGHYYQKSKYDSSVSGQSSFVTSPAADNI--EMLPHYEPIPFSSSMNESAPTGITD 178
Query: 736 HIAQGPDPNIEESPKRKNVTYEELRNKNRESYEVTLTHKTDPSVRPMQERMPKKEVKVNK 915
HI Q VKVNK
Sbjct: 179 HIVQ---------------------------------------------------VKVNK 187
Query: 916 YGDTWDE 936
YGDTWDE
Sbjct: 188 YGDTWDE 194
>ref|NP_001073309.1| OCIA domain-containing protein 1 isoform 2 [Homo sapiens].
Length = 194
Score = 345 bits (886), Expect = 3e-95
Identities = 180/247 (72%), Positives = 186/247 (75%)
Frame = +1
Query: 196 MSGRAEFREPNAEVPRPIPHIGADYIPTEEERRVFAECNDESFWFRSVPLAATSMLITQG 375
M+GRA+FREPNAEVPRPIPHIG DYIPTEEERRVFAECNDESFWFRSVPLAATSMLITQG
Sbjct: 1 MNGRADFREPNAEVPRPIPHIGPDYIPTEEERRVFAECNDESFWFRSVPLAATSMLITQG 60
Query: 376 LISKGILSSHPRYGSIPKLIFACIMGYFAGKLSYVKTCQEKFKNLENSPLGEALRSGQAR 555
LISKGILSSHP+YGSIPKLI ACIMGYFAGKLSYVKTCQEKFK LENSPLGEALRSGQAR
Sbjct: 61 LISKGILSSHPKYGSIPKLILACIMGYFAGKLSYVKTCQEKFKKLENSPLGEALRSGQAR 120
Query: 556 RSSPTGHYSQKSRYDSNVSGHSSFATSPAADNIEKEMLPHYEPIPFSASMNESAPTGITD 735
RSSP GHY QKS+YDS+VSG SSF TSPAADNI EMLPHYEPIPFS+SMNESAPTGITD
Sbjct: 121 RSSPPGHYYQKSKYDSSVSGQSSFVTSPAADNI--EMLPHYEPIPFSSSMNESAPTGITD 178
Query: 736 HIAQGPDPNIEESPKRKNVTYEELRNKNRESYEVTLTHKTDPSVRPMQERMPKKEVKVNK 915
HI Q VKVNK
Sbjct: 179 HIVQ---------------------------------------------------VKVNK 187
Query: 916 YGDTWDE 936
YGDTWDE
Sbjct: 188 YGDTWDE 194
>ref|NP_001073310.1| OCIA domain-containing protein 1 isoform 3 [Homo sapiens].
Length = 187
Score = 345 bits (884), Expect = 5e-95
Identities = 169/185 (91%), Positives = 175/185 (94%)
Frame = +1
Query: 196 MSGRAEFREPNAEVPRPIPHIGADYIPTEEERRVFAECNDESFWFRSVPLAATSMLITQG 375
M+GRA+FREPNAEVPRPIPHIG DYIPTEEERRVFAECNDESFWFRSVPLAATSMLITQG
Sbjct: 1 MNGRADFREPNAEVPRPIPHIGPDYIPTEEERRVFAECNDESFWFRSVPLAATSMLITQG 60
Query: 376 LISKGILSSHPRYGSIPKLIFACIMGYFAGKLSYVKTCQEKFKNLENSPLGEALRSGQAR 555
LISKGILSSHP+YGSIPKLI ACIMGYFAGKLSYVKTCQEKFK LENSPLGEALRSGQAR
Sbjct: 61 LISKGILSSHPKYGSIPKLILACIMGYFAGKLSYVKTCQEKFKKLENSPLGEALRSGQAR 120
Query: 556 RSSPTGHYSQKSRYDSNVSGHSSFATSPAADNIEKEMLPHYEPIPFSASMNESAPTGITD 735
RSSP GHY QKS+YDS+VSG SSF TSPAADNI EMLPHYEPIPFS+SMNESAPTGITD
Sbjct: 121 RSSPPGHYYQKSKYDSSVSGQSSFVTSPAADNI--EMLPHYEPIPFSSSMNESAPTGITD 178
Query: 736 HIAQG 750
HI QG
Sbjct: 179 HIVQG 183
>ref|NP_001014446.1| OCIA domain-containing protein 2 isoform 1 [Homo sapiens].
Length = 154
Score = 82.8 bits (203), Expect = 5e-16
Identities = 36/87 (41%), Positives = 58/87 (66%)
Frame = +1
Query: 268 YIPTEEERRVFAECNDESFWFRSVPLAATSMLITQGLISKGILSSHPRYGSIPKLIFACI 447
+I E ++ EC +ESFW R++P + SML+TQGL+ +G L+++ R+GS+PK+ A +
Sbjct: 33 HIHRAEISKIMRECQEESFWKRALPFSLVSMLVTQGLVYQGYLAANSRFGSLPKVALAGL 92
Query: 448 MGYFAGKLSYVKTCQEKFKNLENSPLG 528
+G+ GK+SY+ CQ KF E+ G
Sbjct: 93 LGFGLGKVSYIGVCQSKFHFFEDQLRG 119
>ref|NP_689611.1| OCIA domain-containing protein 2 isoform 2 [Homo sapiens].
Length = 99
Score = 59.3 bits (142), Expect = 6e-09
Identities = 24/55 (43%), Positives = 40/55 (72%)
Frame = +1
Query: 268 YIPTEEERRVFAECNDESFWFRSVPLAATSMLITQGLISKGILSSHPRYGSIPKL 432
+I E ++ EC +ESFW R++P + SML+TQGL+ +G L+++ R+GS+PK+
Sbjct: 33 HIHRAEISKIMRECQEESFWKRALPFSLVSMLVTQGLVYQGYLAANSRFGSLPKV 87
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,033,117
Number of extensions: 950996
Number of successful extensions: 3683
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3674
Number of HSP's successfully gapped: 8
Length of query: 341
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 238
Effective length of database: 14,901,872
Effective search space: 3546645536
Effective search space used: 3546645536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001711
(1025 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_075918.1| OCIA domain-containing protein 1 isoform 1 [Mus... 442 e-124
Alignment gi|NP_001153359.1| OCIA domain-containing protein 1 isoform 2 [... 327 9e-90
Alignment gi|NP_001153361.1| OCIA domain-containing protein 1 isoform 3 [... 326 2e-89
Alignment gi|NP_001153360.1| OCIA domain-containing protein 1 isoform 3 [... 326 2e-89
Alignment gi|NP_081226.1| OCIA domain-containing protein 2 [Mus musculus]. 88 1e-17
>ref|NP_075918.1| OCIA domain-containing protein 1 isoform 1 [Mus musculus].
Length = 247
Score = 442 bits (1138), Expect = e-124
Identities = 212/247 (85%), Positives = 229/247 (92%)
Frame = +1
Query: 196 MSGRAEFREPNAEVPRPIPHIGADYIPTEEERRVFAECNDESFWFRSVPLAATSMLITQG 375
M+GRA+FREPNA+V RPIP IG YIPTEEE R+FAEC++E FWFRSVPLAATSMLITQG
Sbjct: 1 MNGRADFREPNAQVSRPIPDIGGGYIPTEEEWRLFAECHEECFWFRSVPLAATSMLITQG 60
Query: 376 LISKGILSSHPRYGSIPKLIFACIMGYFAGKLSYVKTCQEKFKNLENSPLGEALRSGQAR 555
LISKGILSSHP+YGSIPKL+FACI+GYFAGKLSYVKTCQEKFK LENSPLGEALRSG+ R
Sbjct: 61 LISKGILSSHPKYGSIPKLLFACIVGYFAGKLSYVKTCQEKFKKLENSPLGEALRSGELR 120
Query: 556 RSSPTGHYSQKSRYDSNVSGHSSFATSPAADNIEKEMLPHYEPIPFSASMNESAPTGITD 735
RSSP GHY+QK ++DSNVSG SSF TSPAADNIEKE LP YEPIPFSASMNES PTGITD
Sbjct: 121 RSSPPGHYTQKPKFDSNVSGQSSFGTSPAADNIEKEALPRYEPIPFSASMNESTPTGITD 180
Query: 736 HIAQGPDPNIEESPKRKNVTYEELRNKNRESYEVTLTHKTDPSVRPMQERMPKKEVKVNK 915
HIAQGP+PN+EESPKRK VTYEELR+KNRESY VTL HKTDPSVRPMQER+PKKEVKVNK
Sbjct: 181 HIAQGPEPNLEESPKRKGVTYEELRSKNRESYGVTLPHKTDPSVRPMQERVPKKEVKVNK 240
Query: 916 YGDTWDE 936
YGDTWDE
Sbjct: 241 YGDTWDE 247
>ref|NP_001153359.1| OCIA domain-containing protein 1 isoform 2 [Mus musculus].
Length = 196
Score = 327 bits (838), Expect = 9e-90
Identities = 168/247 (68%), Positives = 181/247 (73%)
Frame = +1
Query: 196 MSGRAEFREPNAEVPRPIPHIGADYIPTEEERRVFAECNDESFWFRSVPLAATSMLITQG 375
M+GRA+FREPNA+V RPIP IG YIPTEEE R+FAEC++E FWFRSVPLAATSMLITQG
Sbjct: 1 MNGRADFREPNAQVSRPIPDIGGGYIPTEEEWRLFAECHEECFWFRSVPLAATSMLITQG 60
Query: 376 LISKGILSSHPRYGSIPKLIFACIMGYFAGKLSYVKTCQEKFKNLENSPLGEALRSGQAR 555
LISKGILSSHP+YGSIPKL+FACI+GYFAGKLSYVKTCQEKFK LENSPLGEALRSG+ R
Sbjct: 61 LISKGILSSHPKYGSIPKLLFACIVGYFAGKLSYVKTCQEKFKKLENSPLGEALRSGELR 120
Query: 556 RSSPTGHYSQKSRYDSNVSGHSSFATSPAADNIEKEMLPHYEPIPFSASMNESAPTGITD 735
RSSP GHY+QK ++DSNVSG SSF TSPAADNIEKE LP YEPIPFSASMNES PTGITD
Sbjct: 121 RSSPPGHYTQKPKFDSNVSGQSSFGTSPAADNIEKEALPRYEPIPFSASMNESTPTGITD 180
Query: 736 HIAQGPDPNIEESPKRKNVTYEELRNKNRESYEVTLTHKTDPSVRPMQERMPKKEVKVNK 915
HIAQ VKVNK
Sbjct: 181 HIAQ---------------------------------------------------VKVNK 189
Query: 916 YGDTWDE 936
YGDTWDE
Sbjct: 190 YGDTWDE 196
>ref|NP_001153361.1| OCIA domain-containing protein 1 isoform 3 [Mus musculus].
Length = 189
Score = 326 bits (836), Expect = 2e-89
Identities = 157/185 (84%), Positives = 170/185 (91%)
Frame = +1
Query: 196 MSGRAEFREPNAEVPRPIPHIGADYIPTEEERRVFAECNDESFWFRSVPLAATSMLITQG 375
M+GRA+FREPNA+V RPIP IG YIPTEEE R+FAEC++E FWFRSVPLAATSMLITQG
Sbjct: 1 MNGRADFREPNAQVSRPIPDIGGGYIPTEEEWRLFAECHEECFWFRSVPLAATSMLITQG 60
Query: 376 LISKGILSSHPRYGSIPKLIFACIMGYFAGKLSYVKTCQEKFKNLENSPLGEALRSGQAR 555
LISKGILSSHP+YGSIPKL+FACI+GYFAGKLSYVKTCQEKFK LENSPLGEALRSG+ R
Sbjct: 61 LISKGILSSHPKYGSIPKLLFACIVGYFAGKLSYVKTCQEKFKKLENSPLGEALRSGELR 120
Query: 556 RSSPTGHYSQKSRYDSNVSGHSSFATSPAADNIEKEMLPHYEPIPFSASMNESAPTGITD 735
RSSP GHY+QK ++DSNVSG SSF TSPAADNIEKE LP YEPIPFSASMNES PTGITD
Sbjct: 121 RSSPPGHYTQKPKFDSNVSGQSSFGTSPAADNIEKEALPRYEPIPFSASMNESTPTGITD 180
Query: 736 HIAQG 750
HIAQG
Sbjct: 181 HIAQG 185
>ref|NP_001153360.1| OCIA domain-containing protein 1 isoform 3 [Mus musculus].
Length = 189
Score = 326 bits (836), Expect = 2e-89
Identities = 157/185 (84%), Positives = 170/185 (91%)
Frame = +1
Query: 196 MSGRAEFREPNAEVPRPIPHIGADYIPTEEERRVFAECNDESFWFRSVPLAATSMLITQG 375
M+GRA+FREPNA+V RPIP IG YIPTEEE R+FAEC++E FWFRSVPLAATSMLITQG
Sbjct: 1 MNGRADFREPNAQVSRPIPDIGGGYIPTEEEWRLFAECHEECFWFRSVPLAATSMLITQG 60
Query: 376 LISKGILSSHPRYGSIPKLIFACIMGYFAGKLSYVKTCQEKFKNLENSPLGEALRSGQAR 555
LISKGILSSHP+YGSIPKL+FACI+GYFAGKLSYVKTCQEKFK LENSPLGEALRSG+ R
Sbjct: 61 LISKGILSSHPKYGSIPKLLFACIVGYFAGKLSYVKTCQEKFKKLENSPLGEALRSGELR 120
Query: 556 RSSPTGHYSQKSRYDSNVSGHSSFATSPAADNIEKEMLPHYEPIPFSASMNESAPTGITD 735
RSSP GHY+QK ++DSNVSG SSF TSPAADNIEKE LP YEPIPFSASMNES PTGITD
Sbjct: 121 RSSPPGHYTQKPKFDSNVSGQSSFGTSPAADNIEKEALPRYEPIPFSASMNESTPTGITD 180
Query: 736 HIAQG 750
HIAQG
Sbjct: 181 HIAQG 185
>ref|NP_081226.1| OCIA domain-containing protein 2 [Mus musculus].
Length = 154
Score = 87.8 bits (216), Expect = 1e-17
Identities = 37/87 (42%), Positives = 60/87 (68%)
Frame = +1
Query: 268 YIPTEEERRVFAECNDESFWFRSVPLAATSMLITQGLISKGILSSHPRYGSIPKLIFACI 447
+I E ++ EC +ESFW R++P + SML+TQGL+ +G L+++PR+GS+PK+ A +
Sbjct: 33 HIHRGEIAKIIRECQEESFWKRALPFSLISMLVTQGLVHQGYLAANPRFGSLPKVALAGL 92
Query: 448 MGYFAGKLSYVKTCQEKFKNLENSPLG 528
+G+ GK SY++ CQ KF + E+ G
Sbjct: 93 LGFGLGKASYIRVCQSKFHSFEDQLRG 119
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,610,241
Number of extensions: 807847
Number of successful extensions: 2968
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2964
Number of HSP's successfully gapped: 5
Length of query: 341
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 239
Effective length of database: 12,553,887
Effective search space: 3000378993
Effective search space used: 3000378993
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001711
(1025 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,123,386
Number of extensions: 591178
Number of successful extensions: 2237
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 2234
Number of HSP's successfully gapped: 0
Length of query: 341
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 241
Effective length of database: 8,854,232
Effective search space: 2133869912
Effective search space used: 2133869912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001711
(1025 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 353 1e-94
>Sscrofa_Chr08
|| Length = 148491826
Score = 353 bits (178), Expect = 1e-94
Identities = 178/178 (100%)
Strand = Plus / Plus
Query: 572 ggcactattctcaaaagtcaagatatgactcaaacgtgagtggtcattcatcttttgcga 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40869149 ggcactattctcaaaagtcaagatatgactcaaacgtgagtggtcattcatcttttgcga 40869208
Query: 632 catccccagcagcagacaacatagaaaaagagatgcttcctcattatgagccgattccat 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40869209 catccccagcagcagacaacatagaaaaagagatgcttcctcattatgagccgattccat 40869268
Query: 692 tcagtgcttctatgaacgaatctgctcccactggtattactgaccatattgcccaagg 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40869269 tcagtgcttctatgaacgaatctgctcccactggtattactgaccatattgcccaagg 40869326
Score = 293 bits (148), Expect = 1e-76
Identities = 175/188 (93%)
Strand = Plus / Plus
Query: 4 ttttgtgcccgtatctggttgatttctggacggtcgctgcggtgaccgctccccaccccc 63
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 40854807 ttttgtgcccgtatctggttgatttctggacggttgctgcggtgaccgctccccaccccc 40854866
Query: 64 aactttgctgctgtctcgcgcatctccctccctnnnnnnnnnnnngaccctgctcgggtt 123
||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 40854867 aactttgctgctgtctcgcgcatctccctccctccccccacccccgaccctgctcgggtt 40854926
Query: 124 ccctccaggccttctgcccctggtcgctcgggctcgccgcgctgtcacccgctgctgtcg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40854927 ccctccaggccttctgcccctggtcgctcgggctcgccgcgctgtcacccgctgctgtcg 40854986
Query: 184 tcgggagg 191
||||||||
Sbjct: 40854987 tcgggagg 40854994
Score = 285 bits (144), Expect = 2e-74
Identities = 144/144 (100%)
Strand = Plus / Plus
Query: 747 aggacctgatcccaacattgaagaaagtcctaaaagaaaaaatgttacatatgaggaatt 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40872947 aggacctgatcccaacattgaagaaagtcctaaaagaaaaaatgttacatatgaggaatt 40873006
Query: 807 aaggaataagaacagagagtcatatgaagttactttaacacataagactgacccctcagt 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40873007 aaggaataagaacagagagtcatatgaagttactttaacacataagactgacccctcagt 40873066
Query: 867 caggcctatgcaggaaagaatgcc 890
||||||||||||||||||||||||
Sbjct: 40873067 caggcctatgcaggaaagaatgcc 40873090
Score = 272 bits (137), Expect = 4e-70
Identities = 137/137 (100%)
Strand = Plus / Plus
Query: 437 ttgcttgcatcatgggatactttgctggaaagctttcttatgtgaaaacttgccaagaga 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40868192 ttgcttgcatcatgggatactttgctggaaagctttcttatgtgaaaacttgccaagaga 40868251
Query: 497 agtttaagaatcttgagaattcccctcttggagaagctttacgatcaggacaggcacgac 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40868252 agtttaagaatcttgagaattcccctcttggagaagctttacgatcaggacaggcacgac 40868311
Query: 557 gatcttcaccaactggg 573
|||||||||||||||||
Sbjct: 40868312 gatcttcaccaactggg 40868328
Score = 250 bits (126), Expect = 1e-63
Identities = 126/126 (100%)
Strand = Plus / Plus
Query: 900 agtcaaagtaaacaaatatggagatacttgggatgagtgaaaaattgcatcatttggacc 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40875704 agtcaaagtaaacaaatatggagatacttgggatgagtgaaaaattgcatcatttggacc 40875763
Query: 960 tacggaaggagtttgaatatccagcttcatctgggtgatcatgaacatctgcatgctttg 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40875764 tacggaaggagtttgaatatccagcttcatctgggtgatcatgaacatctgcatgctttg 40875823
Query: 1020 agctca 1025
||||||
Sbjct: 40875824 agctca 40875829
Score = 109 bits (55), Expect = 3e-21
Identities = 55/55 (100%)
Strand = Plus / Plus
Query: 335 ctgtacctttggctgcaacaagtatgttgattactcaaggattgattagtaaagg 389
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40860107 ctgtacctttggctgcaacaagtatgttgattactcaaggattgattagtaaagg 40860161
Score = 99.6 bits (50), Expect = 3e-18
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 387 aggaatcctttcaagtcatcccagatatggttctatacctaaacttatat 436
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40866288 aggaatcctttcaagtcatcccagatatggttctatacctaaacttatat 40866337
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,367,000
Number of extensions: 229
Number of successful extensions: 229
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 8
Length of query: 1025
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1004
Effective length of database: 2,808,413,156
Effective search space: 2819646808624
Effective search space used: 2819646808624
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)