Animal-Genome cDNA 20110601C-001713


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001713
         (2350 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001029790.1| eukaryotic translation initiation factor 3 s...  1077   0.0  

>ref|NP_001029790.1| eukaryotic translation initiation factor 3 subunit C [Bos taurus].
          Length = 912

 Score = 1077 bits (2786), Expect = 0.0
 Identities = 567/730 (77%), Positives = 575/730 (78%)
 Frame = +3

Query: 141  MSRFFTTXXXXXXXXXXXXXXXVTKPVGGNYGKQPLLLSEDEEDTKRVVRSAKDKRFEEL 320
            MSRFFTT               VTKPVGGNYGKQPLLLSEDEEDTKRVVRSAKDKRFEEL
Sbjct: 1    MSRFFTTGSDSESESSLSGEELVTKPVGGNYGKQPLLLSEDEEDTKRVVRSAKDKRFEEL 60

Query: 321  TNLIRTIRNAMKIRDVTKCLEEFELLGKAYGKAKSIVDKEGVPRFYIRILADLEDYLNEL 500
            TNLIRTIRNAMKIRDVTKCLEEFELLGKAYGKAKSIVDKEGVPRFYIRILADLEDYLNEL
Sbjct: 61   TNLIRTIRNAMKIRDVTKCLEEFELLGKAYGKAKSIVDKEGVPRFYIRILADLEDYLNEL 120

Query: 501  WEDKEGXXXXXXXXXXXLSTLRQKIRKYNRDFESHITNYKQNPEQSADEDAEKNXXXXXX 680
            WEDKEG           LSTLRQKIRKYNRDFESHITNYKQNPEQSADEDAEKN      
Sbjct: 121  WEDKEGKKKMNKNNAKALSTLRQKIRKYNRDFESHITNYKQNPEQSADEDAEKNEEDSEG 180

Query: 681  XXXXXXXXXXVSAATFLKKKSEAPSGESRKFLKKMXXXXXXXXXXXXXXXXXXXXXXXXX 860
                      V+AA FLKKKSEAPSG+SRKFLKK                          
Sbjct: 181  SSDEDEDDDGVTAAAFLKKKSEAPSGDSRKFLKK-EDEDEDSEESEDSEAWDTSSTSSDS 239

Query: 861  XXXXXXXKQTVLASRFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLXXXXXXXXXXX 1040
                   KQTVLASRFL                                           
Sbjct: 240  DSEEEEGKQTVLASRFLKKAPTTEEDKKAAEKKREDKAKKKHDRKSRRPDEEEEDNEGGE 299

Query: 1041 XXXXXXXXPLVKEKPKMFAKGTEITHAVVIKKLNEILQARGKKGTDRAVQIEMLQLLVQI 1220
                    PLVKEKPKMFAKGTEITHAVVIKKLNEILQARGKKGTDRA QIE+LQLLVQI
Sbjct: 300  WERVRGGVPLVKEKPKMFAKGTEITHAVVIKKLNEILQARGKKGTDRAAQIELLQLLVQI 359

Query: 1221 ASENNLGEGVIVKIKFNIIASLYDYNPNLATYMKPEMWQKCLDCINELMDILFANPNIFV 1400
            ASENNLGEGVIVKIKFNIIASLYDYNPNLATYMKPEMWQKCLDCINELMDILFANPNIFV
Sbjct: 360  ASENNLGEGVIVKIKFNIIASLYDYNPNLATYMKPEMWQKCLDCINELMDILFANPNIFV 419

Query: 1401 GENILEESENLHNADQPLRVRGCILTLVERMDEEFTKIMQNTDPHSQEYVEHLKDEAQVC 1580
            GENILEESENLHNADQPLRVRGCILTLVERMDEEFTKIMQNTDPHSQEYVEHLKDEAQVC
Sbjct: 420  GENILEESENLHNADQPLRVRGCILTLVERMDEEFTKIMQNTDPHSQEYVEHLKDEAQVC 479

Query: 1581 AIIERVQRYLEEKGTTEEICRIYLRRILHTYYKFDYKAHQRQLTPPEGSSKSEQDQAENE 1760
            AIIERVQRYLEEKGTTEE+CRIYLRRILHTYYKFDYKAHQRQLTPPEGSSKSEQDQAENE
Sbjct: 480  AIIERVQRYLEEKGTTEEVCRIYLRRILHTYYKFDYKAHQRQLTPPEGSSKSEQDQAENE 539

Query: 1761 GEDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQH 1940
            GEDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQH
Sbjct: 540  GEDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQH 599

Query: 1941 SDPPVQILYNRTMVQLGICAFRQGLTKDAHNALLDIQSSGRAXXXXXXXXXXXXXXXXNQ 2120
            +DPPVQILYNRTMVQLGICAFRQGLTKDAHNALLDIQSSGRA                NQ
Sbjct: 600  ADPPVQILYNRTMVQLGICAFRQGLTKDAHNALLDIQSSGRAKELLGQGLLLRSLQERNQ 659

Query: 2121 EQEKVETRXXVPFPLHIKLKLLXCVYLVSAMLLEIPYMAAHQSDARRTLISKQFHSQLRV 2300
            EQEKVE R  VPF LHI L+LL CVYLVSAMLLEIPYMAAH+SDARR +ISKQFH QLRV
Sbjct: 660  EQEKVERRRQVPFHLHINLELLECVYLVSAMLLEIPYMAAHESDARRRMISKQFHHQLRV 719

Query: 2301 GERHPCLVPP 2330
            GER P L PP
Sbjct: 720  GERQPLLGPP 729


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 82,054,255
Number of extensions: 2229867
Number of successful extensions: 9983
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9948
Number of HSP's successfully gapped: 2
Length of query: 783
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 673
Effective length of database: 14,041,694
Effective search space: 9450060062
Effective search space used: 9450060062
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001713
         (2350 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_536923.2| PREDICTED: similar to eukaryotic translation in...  1087   0.0  

>ref|XP_536923.2| PREDICTED: similar to eukaryotic translation initiation factor 3,
            subunit 8, 110kDa [Canis familiaris].
          Length = 913

 Score = 1087 bits (2810), Expect = 0.0
 Identities = 570/730 (78%), Positives = 576/730 (78%)
 Frame = +3

Query: 141  MSRFFTTXXXXXXXXXXXXXXXVTKPVGGNYGKQPLLLSEDEEDTKRVVRSAKDKRFEEL 320
            MSRFFTT               VTKPVGGNYGKQPLLLSEDEEDTKRVVRSAKDKRFEEL
Sbjct: 1    MSRFFTTGSDSESESSLSGEELVTKPVGGNYGKQPLLLSEDEEDTKRVVRSAKDKRFEEL 60

Query: 321  TNLIRTIRNAMKIRDVTKCLEEFELLGKAYGKAKSIVDKEGVPRFYIRILADLEDYLNEL 500
            TNLIRTIRNAMKIRDVTKCLEEFELLGKAYGKAKSIVDKEGVPRFYIRILADLEDYLNEL
Sbjct: 61   TNLIRTIRNAMKIRDVTKCLEEFELLGKAYGKAKSIVDKEGVPRFYIRILADLEDYLNEL 120

Query: 501  WEDKEGXXXXXXXXXXXLSTLRQKIRKYNRDFESHITNYKQNPEQSADEDAEKNXXXXXX 680
            WEDKEG           LSTLRQKIRKYNRDFESHITNYKQNPEQSADEDAEK       
Sbjct: 121  WEDKEGKKKMNKNNAKALSTLRQKIRKYNRDFESHITNYKQNPEQSADEDAEKTEEDSEG 180

Query: 681  XXXXXXXXXXVSAATFLKKKSEAPSGESRKFLKKMXXXXXXXXXXXXXXXXXXXXXXXXX 860
                      VSAA FLKKKSEAPSGESRKFLKKM                         
Sbjct: 181  SSDEDEDEDGVSAAAFLKKKSEAPSGESRKFLKKMEDDEEDSEDSEDDEDWDTGSTSSDS 240

Query: 861  XXXXXXXKQTVLASRFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLXXXXXXXXXXX 1040
                   KQTVLASRFL                               L           
Sbjct: 241  DSEEEEGKQTVLASRFLKKAPTTEEDKKAAEKKREDKAKKKHDRKSKRLDEEEEDNEGGE 300

Query: 1041 XXXXXXXXPLVKEKPKMFAKGTEITHAVVIKKLNEILQARGKKGTDRAVQIEMLQLLVQI 1220
                    PLVKEKPKMFAKGTEITHAVVIKKLNEILQARGKKGTDRA QIE+LQLLVQI
Sbjct: 301  WERVRGGVPLVKEKPKMFAKGTEITHAVVIKKLNEILQARGKKGTDRAAQIELLQLLVQI 360

Query: 1221 ASENNLGEGVIVKIKFNIIASLYDYNPNLATYMKPEMWQKCLDCINELMDILFANPNIFV 1400
            ASENNLGEGVIVKIKFNIIASLYDYNPNLATYMKPEMWQKCLDCINELMDILFANPNIFV
Sbjct: 361  ASENNLGEGVIVKIKFNIIASLYDYNPNLATYMKPEMWQKCLDCINELMDILFANPNIFV 420

Query: 1401 GENILEESENLHNADQPLRVRGCILTLVERMDEEFTKIMQNTDPHSQEYVEHLKDEAQVC 1580
            GENILEESENLHNADQPLRVRGCILTLVERMDEEFTKIMQNTDPHSQEYVEHLKDEAQVC
Sbjct: 421  GENILEESENLHNADQPLRVRGCILTLVERMDEEFTKIMQNTDPHSQEYVEHLKDEAQVC 480

Query: 1581 AIIERVQRYLEEKGTTEEICRIYLRRILHTYYKFDYKAHQRQLTPPEGSSKSEQDQAENE 1760
            AIIERVQRYLEEKGTTEEICR+YLRRILHTYYKFDYKAHQRQLTPPEGSSKSEQDQAENE
Sbjct: 481  AIIERVQRYLEEKGTTEEICRVYLRRILHTYYKFDYKAHQRQLTPPEGSSKSEQDQAENE 540

Query: 1761 GEDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQH 1940
            GEDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQH
Sbjct: 541  GEDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQH 600

Query: 1941 SDPPVQILYNRTMVQLGICAFRQGLTKDAHNALLDIQSSGRAXXXXXXXXXXXXXXXXNQ 2120
            +DPPVQILYNRTMVQLGICAFRQGLTKDAHNALLDIQSSGRA                NQ
Sbjct: 601  ADPPVQILYNRTMVQLGICAFRQGLTKDAHNALLDIQSSGRAKELLGQGLLLRSLQERNQ 660

Query: 2121 EQEKVETRXXVPFPLHIKLKLLXCVYLVSAMLLEIPYMAAHQSDARRTLISKQFHSQLRV 2300
            EQEKVE R  VPF LHI L+LL CVYLVSAMLLEIPYMAAH+SDARR +ISKQFH QLRV
Sbjct: 661  EQEKVERRRQVPFHLHINLELLECVYLVSAMLLEIPYMAAHESDARRRMISKQFHHQLRV 720

Query: 2301 GERHPCLVPP 2330
            GER P L PP
Sbjct: 721  GERQPLLGPP 730


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 85,609,138
Number of extensions: 2298866
Number of successful extensions: 10311
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 10262
Number of HSP's successfully gapped: 2
Length of query: 783
Length of database: 18,874,504
Length adjustment: 111
Effective length of query: 672
Effective length of database: 15,174,208
Effective search space: 10197067776
Effective search space used: 10197067776
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001713
         (2350 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001186071.1| eukaryotic translation initiation factor 3 s...  1081   0.0  
Alignment   gi|NP_001032897.1| eukaryotic translation initiation factor 3 s...  1081   0.0  
Alignment   gi|NP_003743.1| eukaryotic translation initiation factor 3 subu...  1081   0.0  
Alignment   gi|NP_001093131.1| eukaryotic translation initiation factor 3 s...  1076   0.0  

>ref|NP_001186071.1| eukaryotic translation initiation factor 3 subunit C [Homo sapiens].
          Length = 913

 Score = 1081 bits (2795), Expect = 0.0
 Identities = 567/730 (77%), Positives = 575/730 (78%)
 Frame = +3

Query: 141  MSRFFTTXXXXXXXXXXXXXXXVTKPVGGNYGKQPLLLSEDEEDTKRVVRSAKDKRFEEL 320
            MSRFFTT               VTKPVGGNYGKQPLLLSEDEEDTKRVVRSAKDKRFEEL
Sbjct: 1    MSRFFTTGSDSESESSLSGEELVTKPVGGNYGKQPLLLSEDEEDTKRVVRSAKDKRFEEL 60

Query: 321  TNLIRTIRNAMKIRDVTKCLEEFELLGKAYGKAKSIVDKEGVPRFYIRILADLEDYLNEL 500
            TNLIRTIRNAMKIRDVTKCLEEFELLGKAYGKAKSIVDKEGVPRFYIRILADLEDYLNEL
Sbjct: 61   TNLIRTIRNAMKIRDVTKCLEEFELLGKAYGKAKSIVDKEGVPRFYIRILADLEDYLNEL 120

Query: 501  WEDKEGXXXXXXXXXXXLSTLRQKIRKYNRDFESHITNYKQNPEQSADEDAEKNXXXXXX 680
            WEDKEG           LSTLRQKIRKYNRDFESHIT+YKQNPEQSADEDAEKN      
Sbjct: 121  WEDKEGKKKMNKNNAKALSTLRQKIRKYNRDFESHITSYKQNPEQSADEDAEKNEEDSEG 180

Query: 681  XXXXXXXXXXVSAATFLKKKSEAPSGESRKFLKKMXXXXXXXXXXXXXXXXXXXXXXXXX 860
                      VSAATFLKKKSEAPSGESRKFLKKM                         
Sbjct: 181  SSDEDEDEDGVSAATFLKKKSEAPSGESRKFLKKMDDEDEDSEDSEDDEDWDTGSTSSDS 240

Query: 861  XXXXXXXKQTVLASRFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLXXXXXXXXXXX 1040
                   KQT LASRFL                               L           
Sbjct: 241  DSEEEEGKQTALASRFLKKAPTTDEDKKAAEKKREDKAKKKHDRKSKRLDEEEEDNEGGE 300

Query: 1041 XXXXXXXXPLVKEKPKMFAKGTEITHAVVIKKLNEILQARGKKGTDRAVQIEMLQLLVQI 1220
                    PLVKEKPKMFAKGTEITHAVVIKKLNEILQARGKKGTDRA QIE+LQLLVQI
Sbjct: 301  WERVRGGVPLVKEKPKMFAKGTEITHAVVIKKLNEILQARGKKGTDRAAQIELLQLLVQI 360

Query: 1221 ASENNLGEGVIVKIKFNIIASLYDYNPNLATYMKPEMWQKCLDCINELMDILFANPNIFV 1400
            A+ENNLGEGVIVKIKFNIIASLYDYNPNLATYMKPEMW KCLDCINELMDILFANPNIFV
Sbjct: 361  AAENNLGEGVIVKIKFNIIASLYDYNPNLATYMKPEMWGKCLDCINELMDILFANPNIFV 420

Query: 1401 GENILEESENLHNADQPLRVRGCILTLVERMDEEFTKIMQNTDPHSQEYVEHLKDEAQVC 1580
            GENILEESENLHNADQPLRVRGCILTLVERMDEEFTKIMQNTDPHSQEYVEHLKDEAQVC
Sbjct: 421  GENILEESENLHNADQPLRVRGCILTLVERMDEEFTKIMQNTDPHSQEYVEHLKDEAQVC 480

Query: 1581 AIIERVQRYLEEKGTTEEICRIYLRRILHTYYKFDYKAHQRQLTPPEGSSKSEQDQAENE 1760
            AIIERVQRYLEEKGTTEE+CRIYL RILHTYYKFDYKAHQRQLTPPEGSSKSEQDQAENE
Sbjct: 481  AIIERVQRYLEEKGTTEEVCRIYLLRILHTYYKFDYKAHQRQLTPPEGSSKSEQDQAENE 540

Query: 1761 GEDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQH 1940
            GEDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQH
Sbjct: 541  GEDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQH 600

Query: 1941 SDPPVQILYNRTMVQLGICAFRQGLTKDAHNALLDIQSSGRAXXXXXXXXXXXXXXXXNQ 2120
            +DPPVQILYNRTMVQLGICAFRQGLTKDAHNALLDIQSSGRA                NQ
Sbjct: 601  ADPPVQILYNRTMVQLGICAFRQGLTKDAHNALLDIQSSGRAKELLGQGLLLRSLQERNQ 660

Query: 2121 EQEKVETRXXVPFPLHIKLKLLXCVYLVSAMLLEIPYMAAHQSDARRTLISKQFHSQLRV 2300
            EQEKVE R  VPF LHI L+LL CVYLVSAMLLEIPYMAAH+SDARR +ISKQFH QLRV
Sbjct: 661  EQEKVERRRQVPFHLHINLELLECVYLVSAMLLEIPYMAAHESDARRRMISKQFHHQLRV 720

Query: 2301 GERHPCLVPP 2330
            GER P L PP
Sbjct: 721  GERQPLLGPP 730


>ref|NP_001032897.1| eukaryotic translation initiation factor 3 subunit C [Homo sapiens].
          Length = 913

 Score = 1081 bits (2795), Expect = 0.0
 Identities = 567/730 (77%), Positives = 575/730 (78%)
 Frame = +3

Query: 141  MSRFFTTXXXXXXXXXXXXXXXVTKPVGGNYGKQPLLLSEDEEDTKRVVRSAKDKRFEEL 320
            MSRFFTT               VTKPVGGNYGKQPLLLSEDEEDTKRVVRSAKDKRFEEL
Sbjct: 1    MSRFFTTGSDSESESSLSGEELVTKPVGGNYGKQPLLLSEDEEDTKRVVRSAKDKRFEEL 60

Query: 321  TNLIRTIRNAMKIRDVTKCLEEFELLGKAYGKAKSIVDKEGVPRFYIRILADLEDYLNEL 500
            TNLIRTIRNAMKIRDVTKCLEEFELLGKAYGKAKSIVDKEGVPRFYIRILADLEDYLNEL
Sbjct: 61   TNLIRTIRNAMKIRDVTKCLEEFELLGKAYGKAKSIVDKEGVPRFYIRILADLEDYLNEL 120

Query: 501  WEDKEGXXXXXXXXXXXLSTLRQKIRKYNRDFESHITNYKQNPEQSADEDAEKNXXXXXX 680
            WEDKEG           LSTLRQKIRKYNRDFESHIT+YKQNPEQSADEDAEKN      
Sbjct: 121  WEDKEGKKKMNKNNAKALSTLRQKIRKYNRDFESHITSYKQNPEQSADEDAEKNEEDSEG 180

Query: 681  XXXXXXXXXXVSAATFLKKKSEAPSGESRKFLKKMXXXXXXXXXXXXXXXXXXXXXXXXX 860
                      VSAATFLKKKSEAPSGESRKFLKKM                         
Sbjct: 181  SSDEDEDEDGVSAATFLKKKSEAPSGESRKFLKKMDDEDEDSEDSEDDEDWDTGSTSSDS 240

Query: 861  XXXXXXXKQTVLASRFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLXXXXXXXXXXX 1040
                   KQT LASRFL                               L           
Sbjct: 241  DSEEEEGKQTALASRFLKKAPTTDEDKKAAEKKREDKAKKKHDRKSKRLDEEEEDNEGGE 300

Query: 1041 XXXXXXXXPLVKEKPKMFAKGTEITHAVVIKKLNEILQARGKKGTDRAVQIEMLQLLVQI 1220
                    PLVKEKPKMFAKGTEITHAVVIKKLNEILQARGKKGTDRA QIE+LQLLVQI
Sbjct: 301  WERVRGGVPLVKEKPKMFAKGTEITHAVVIKKLNEILQARGKKGTDRAAQIELLQLLVQI 360

Query: 1221 ASENNLGEGVIVKIKFNIIASLYDYNPNLATYMKPEMWQKCLDCINELMDILFANPNIFV 1400
            A+ENNLGEGVIVKIKFNIIASLYDYNPNLATYMKPEMW KCLDCINELMDILFANPNIFV
Sbjct: 361  AAENNLGEGVIVKIKFNIIASLYDYNPNLATYMKPEMWGKCLDCINELMDILFANPNIFV 420

Query: 1401 GENILEESENLHNADQPLRVRGCILTLVERMDEEFTKIMQNTDPHSQEYVEHLKDEAQVC 1580
            GENILEESENLHNADQPLRVRGCILTLVERMDEEFTKIMQNTDPHSQEYVEHLKDEAQVC
Sbjct: 421  GENILEESENLHNADQPLRVRGCILTLVERMDEEFTKIMQNTDPHSQEYVEHLKDEAQVC 480

Query: 1581 AIIERVQRYLEEKGTTEEICRIYLRRILHTYYKFDYKAHQRQLTPPEGSSKSEQDQAENE 1760
            AIIERVQRYLEEKGTTEE+CRIYL RILHTYYKFDYKAHQRQLTPPEGSSKSEQDQAENE
Sbjct: 481  AIIERVQRYLEEKGTTEEVCRIYLLRILHTYYKFDYKAHQRQLTPPEGSSKSEQDQAENE 540

Query: 1761 GEDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQH 1940
            GEDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQH
Sbjct: 541  GEDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQH 600

Query: 1941 SDPPVQILYNRTMVQLGICAFRQGLTKDAHNALLDIQSSGRAXXXXXXXXXXXXXXXXNQ 2120
            +DPPVQILYNRTMVQLGICAFRQGLTKDAHNALLDIQSSGRA                NQ
Sbjct: 601  ADPPVQILYNRTMVQLGICAFRQGLTKDAHNALLDIQSSGRAKELLGQGLLLRSLQERNQ 660

Query: 2121 EQEKVETRXXVPFPLHIKLKLLXCVYLVSAMLLEIPYMAAHQSDARRTLISKQFHSQLRV 2300
            EQEKVE R  VPF LHI L+LL CVYLVSAMLLEIPYMAAH+SDARR +ISKQFH QLRV
Sbjct: 661  EQEKVERRRQVPFHLHINLELLECVYLVSAMLLEIPYMAAHESDARRRMISKQFHHQLRV 720

Query: 2301 GERHPCLVPP 2330
            GER P L PP
Sbjct: 721  GERQPLLGPP 730


>ref|NP_003743.1| eukaryotic translation initiation factor 3 subunit C [Homo sapiens].
          Length = 913

 Score = 1081 bits (2795), Expect = 0.0
 Identities = 567/730 (77%), Positives = 575/730 (78%)
 Frame = +3

Query: 141  MSRFFTTXXXXXXXXXXXXXXXVTKPVGGNYGKQPLLLSEDEEDTKRVVRSAKDKRFEEL 320
            MSRFFTT               VTKPVGGNYGKQPLLLSEDEEDTKRVVRSAKDKRFEEL
Sbjct: 1    MSRFFTTGSDSESESSLSGEELVTKPVGGNYGKQPLLLSEDEEDTKRVVRSAKDKRFEEL 60

Query: 321  TNLIRTIRNAMKIRDVTKCLEEFELLGKAYGKAKSIVDKEGVPRFYIRILADLEDYLNEL 500
            TNLIRTIRNAMKIRDVTKCLEEFELLGKAYGKAKSIVDKEGVPRFYIRILADLEDYLNEL
Sbjct: 61   TNLIRTIRNAMKIRDVTKCLEEFELLGKAYGKAKSIVDKEGVPRFYIRILADLEDYLNEL 120

Query: 501  WEDKEGXXXXXXXXXXXLSTLRQKIRKYNRDFESHITNYKQNPEQSADEDAEKNXXXXXX 680
            WEDKEG           LSTLRQKIRKYNRDFESHIT+YKQNPEQSADEDAEKN      
Sbjct: 121  WEDKEGKKKMNKNNAKALSTLRQKIRKYNRDFESHITSYKQNPEQSADEDAEKNEEDSEG 180

Query: 681  XXXXXXXXXXVSAATFLKKKSEAPSGESRKFLKKMXXXXXXXXXXXXXXXXXXXXXXXXX 860
                      VSAATFLKKKSEAPSGESRKFLKKM                         
Sbjct: 181  SSDEDEDEDGVSAATFLKKKSEAPSGESRKFLKKMDDEDEDSEDSEDDEDWDTGSTSSDS 240

Query: 861  XXXXXXXKQTVLASRFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLXXXXXXXXXXX 1040
                   KQT LASRFL                               L           
Sbjct: 241  DSEEEEGKQTALASRFLKKAPTTDEDKKAAEKKREDKAKKKHDRKSKRLDEEEEDNEGGE 300

Query: 1041 XXXXXXXXPLVKEKPKMFAKGTEITHAVVIKKLNEILQARGKKGTDRAVQIEMLQLLVQI 1220
                    PLVKEKPKMFAKGTEITHAVVIKKLNEILQARGKKGTDRA QIE+LQLLVQI
Sbjct: 301  WERVRGGVPLVKEKPKMFAKGTEITHAVVIKKLNEILQARGKKGTDRAAQIELLQLLVQI 360

Query: 1221 ASENNLGEGVIVKIKFNIIASLYDYNPNLATYMKPEMWQKCLDCINELMDILFANPNIFV 1400
            A+ENNLGEGVIVKIKFNIIASLYDYNPNLATYMKPEMW KCLDCINELMDILFANPNIFV
Sbjct: 361  AAENNLGEGVIVKIKFNIIASLYDYNPNLATYMKPEMWGKCLDCINELMDILFANPNIFV 420

Query: 1401 GENILEESENLHNADQPLRVRGCILTLVERMDEEFTKIMQNTDPHSQEYVEHLKDEAQVC 1580
            GENILEESENLHNADQPLRVRGCILTLVERMDEEFTKIMQNTDPHSQEYVEHLKDEAQVC
Sbjct: 421  GENILEESENLHNADQPLRVRGCILTLVERMDEEFTKIMQNTDPHSQEYVEHLKDEAQVC 480

Query: 1581 AIIERVQRYLEEKGTTEEICRIYLRRILHTYYKFDYKAHQRQLTPPEGSSKSEQDQAENE 1760
            AIIERVQRYLEEKGTTEE+CRIYL RILHTYYKFDYKAHQRQLTPPEGSSKSEQDQAENE
Sbjct: 481  AIIERVQRYLEEKGTTEEVCRIYLLRILHTYYKFDYKAHQRQLTPPEGSSKSEQDQAENE 540

Query: 1761 GEDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQH 1940
            GEDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQH
Sbjct: 541  GEDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQH 600

Query: 1941 SDPPVQILYNRTMVQLGICAFRQGLTKDAHNALLDIQSSGRAXXXXXXXXXXXXXXXXNQ 2120
            +DPPVQILYNRTMVQLGICAFRQGLTKDAHNALLDIQSSGRA                NQ
Sbjct: 601  ADPPVQILYNRTMVQLGICAFRQGLTKDAHNALLDIQSSGRAKELLGQGLLLRSLQERNQ 660

Query: 2121 EQEKVETRXXVPFPLHIKLKLLXCVYLVSAMLLEIPYMAAHQSDARRTLISKQFHSQLRV 2300
            EQEKVE R  VPF LHI L+LL CVYLVSAMLLEIPYMAAH+SDARR +ISKQFH QLRV
Sbjct: 661  EQEKVERRRQVPFHLHINLELLECVYLVSAMLLEIPYMAAHESDARRRMISKQFHHQLRV 720

Query: 2301 GERHPCLVPP 2330
            GER P L PP
Sbjct: 721  GERQPLLGPP 730


>ref|NP_001093131.1| eukaryotic translation initiation factor 3 subunit C [Homo sapiens].
          Length = 914

 Score = 1076 bits (2783), Expect = 0.0
 Identities = 567/731 (77%), Positives = 575/731 (78%), Gaps = 1/731 (0%)
 Frame = +3

Query: 141  MSRFFTTXXXXXXXXXXXXXXXVTKPVGGNYGKQPLLLSEDEEDTKRVVRSAKDKRFEEL 320
            MSRFFTT               VTKPVGGNYGKQPLLLSEDEEDTKRVVRSAKDKRFEEL
Sbjct: 1    MSRFFTTGSDSESESSLSGEELVTKPVGGNYGKQPLLLSEDEEDTKRVVRSAKDKRFEEL 60

Query: 321  TNLIRTIRNAMKIRDVTKCLEEFELLGKAYGKAKSIVDKEGVPRFYIRILADLEDYLNEL 500
            TNLIRTIRNAMKIRDVTKCLEEFELLGKAYGKAKSIVDKEGVPRFYIRILADLEDYLNEL
Sbjct: 61   TNLIRTIRNAMKIRDVTKCLEEFELLGKAYGKAKSIVDKEGVPRFYIRILADLEDYLNEL 120

Query: 501  WEDKEGXXXXXXXXXXXLSTLRQKIRKYNRDFESHITNYKQNPEQSADEDAEKNXXXXXX 680
            WEDKEG           LSTLRQKIRKYNRDFESHIT+YKQNPEQSADEDAEKN      
Sbjct: 121  WEDKEGKKKMNKNNAKALSTLRQKIRKYNRDFESHITSYKQNPEQSADEDAEKNEEDSEG 180

Query: 681  XXXXXXXXXXVSAATFLKKKSEAPSGESRKFLKKMXXXXXXXXXXXXXXXXXXXXXXXXX 860
                      VSAATFLKKKSEAPSGESRKFLKKM                         
Sbjct: 181  SSDEDEDEDGVSAATFLKKKSEAPSGESRKFLKKMDDEDEDSEDSEDDEDWDTGSTSSDS 240

Query: 861  XXXXXXXKQTVLASRFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLXXXXXXXXXXX 1040
                   KQT LASRFL                               L           
Sbjct: 241  DSEEEEGKQTALASRFLKKAPTTDEDKKAAEKKREDKAKKKHDRKSKRLDEEEEEDNEGG 300

Query: 1041 XXXXXXXX-PLVKEKPKMFAKGTEITHAVVIKKLNEILQARGKKGTDRAVQIEMLQLLVQ 1217
                     PLVKEKPKMFAKGTEITHAVVIKKLNEILQARGKKGTDRA QIE+LQLLVQ
Sbjct: 301  EWERVRGGVPLVKEKPKMFAKGTEITHAVVIKKLNEILQARGKKGTDRAAQIELLQLLVQ 360

Query: 1218 IASENNLGEGVIVKIKFNIIASLYDYNPNLATYMKPEMWQKCLDCINELMDILFANPNIF 1397
            IA+ENNLGEGVIVKIKFNIIASLYDYNPNLATYMKPEMW KCLDCINELMDILFANPNIF
Sbjct: 361  IAAENNLGEGVIVKIKFNIIASLYDYNPNLATYMKPEMWGKCLDCINELMDILFANPNIF 420

Query: 1398 VGENILEESENLHNADQPLRVRGCILTLVERMDEEFTKIMQNTDPHSQEYVEHLKDEAQV 1577
            VGENILEESENLHNADQPLRVRGCILTLVERMDEEFTKIMQNTDPHSQEYVEHLKDEAQV
Sbjct: 421  VGENILEESENLHNADQPLRVRGCILTLVERMDEEFTKIMQNTDPHSQEYVEHLKDEAQV 480

Query: 1578 CAIIERVQRYLEEKGTTEEICRIYLRRILHTYYKFDYKAHQRQLTPPEGSSKSEQDQAEN 1757
            CAIIERVQRYLEEKGTTEE+CRIYL RILHTYYKFDYKAHQRQLTPPEGSSKSEQDQAEN
Sbjct: 481  CAIIERVQRYLEEKGTTEEVCRIYLLRILHTYYKFDYKAHQRQLTPPEGSSKSEQDQAEN 540

Query: 1758 EGEDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQ 1937
            EGEDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQ
Sbjct: 541  EGEDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQ 600

Query: 1938 HSDPPVQILYNRTMVQLGICAFRQGLTKDAHNALLDIQSSGRAXXXXXXXXXXXXXXXXN 2117
            H+DPPVQILYNRTMVQLGICAFRQGLTKDAHNALLDIQSSGRA                N
Sbjct: 601  HADPPVQILYNRTMVQLGICAFRQGLTKDAHNALLDIQSSGRAKELLGQGLLLRSLQERN 660

Query: 2118 QEQEKVETRXXVPFPLHIKLKLLXCVYLVSAMLLEIPYMAAHQSDARRTLISKQFHSQLR 2297
            QEQEKVE R  VPF LHI L+LL CVYLVSAMLLEIPYMAAH+SDARR +ISKQFH QLR
Sbjct: 661  QEQEKVERRRQVPFHLHINLELLECVYLVSAMLLEIPYMAAHESDARRRMISKQFHHQLR 720

Query: 2298 VGERHPCLVPP 2330
            VGER P L PP
Sbjct: 721  VGERQPLLGPP 731


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 83,878,659
Number of extensions: 2242768
Number of successful extensions: 9578
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 9549
Number of HSP's successfully gapped: 8
Length of query: 783
Length of database: 18,297,164
Length adjustment: 111
Effective length of query: 672
Effective length of database: 14,638,160
Effective search space: 9836843520
Effective search space used: 9836843520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001713
         (2350 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_666312.1| eukaryotic translation initiation factor 3 subu...  1044   0.0  

>ref|NP_666312.1| eukaryotic translation initiation factor 3 subunit C [Mus musculus].
          Length = 911

 Score = 1044 bits (2700), Expect = 0.0
 Identities = 554/730 (75%), Positives = 564/730 (77%)
 Frame = +3

Query: 141  MSRFFTTXXXXXXXXXXXXXXXVTKPVGGNYGKQPLLLSEDEEDTKRVVRSAKDKRFEEL 320
            MSRFFTT               VTKPV GNYGKQPLLLSEDEEDTKRVVRSAKDKRFEEL
Sbjct: 1    MSRFFTTGSDSESESSLSGEELVTKPVSGNYGKQPLLLSEDEEDTKRVVRSAKDKRFEEL 60

Query: 321  TNLIRTIRNAMKIRDVTKCLEEFELLGKAYGKAKSIVDKEGVPRFYIRILADLEDYLNEL 500
            TNLIRTIRNAMKIRDVTKCLEEFELLGKAYGKAKSIVDKEGVPRFYIRILADLEDYLNEL
Sbjct: 61   TNLIRTIRNAMKIRDVTKCLEEFELLGKAYGKAKSIVDKEGVPRFYIRILADLEDYLNEL 120

Query: 501  WEDKEGXXXXXXXXXXXLSTLRQKIRKYNRDFESHITNYKQNPEQSADEDAEKNXXXXXX 680
            WEDKEG           LSTLRQKIRKYNRDFESHITNYKQNPEQSADEDAEKN      
Sbjct: 121  WEDKEGKKKMNKNNAKALSTLRQKIRKYNRDFESHITNYKQNPEQSADEDAEKNEEDSEG 180

Query: 681  XXXXXXXXXXVSAATFLKKKSEAPSGESRKFLKKMXXXXXXXXXXXXXXXXXXXXXXXXX 860
                      V   TFLKKK E+ SGESRKF KKM                         
Sbjct: 181  SSDEDEDEDGVGNTTFLKKKQES-SGESRKFHKKMEDDDEDSEDSEDEEWDTSSTSSDSD 239

Query: 861  XXXXXXXKQTVLASRFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLXXXXXXXXXXX 1040
                   KQTVLAS+FL                               L           
Sbjct: 240  SEEEEG-KQTVLASKFLKKAPTTEEDKKAAEKKREDKAKKKHDRKSKRLDEEEEDNEGGE 298

Query: 1041 XXXXXXXXPLVKEKPKMFAKGTEITHAVVIKKLNEILQARGKKGTDRAVQIEMLQLLVQI 1220
                    PLVKEKPKMFAKGTEITHAVVIKKLNEILQ RGKKGTDRA QIE+LQLLVQI
Sbjct: 299  WERVRGGVPLVKEKPKMFAKGTEITHAVVIKKLNEILQVRGKKGTDRATQIELLQLLVQI 358

Query: 1221 ASENNLGEGVIVKIKFNIIASLYDYNPNLATYMKPEMWQKCLDCINELMDILFANPNIFV 1400
            A+ENNLG GVIVKIKFNIIASLYDYNPNLATYMKPEMWQ CLDCINELMD L A+ NIFV
Sbjct: 359  AAENNLGVGVIVKIKFNIIASLYDYNPNLATYMKPEMWQMCLDCINELMDTLVAHSNIFV 418

Query: 1401 GENILEESENLHNADQPLRVRGCILTLVERMDEEFTKIMQNTDPHSQEYVEHLKDEAQVC 1580
            GENILEESENLHN DQPLRVRGCILTLVERMDEEFTKIMQNTDPHSQEYVEHLKDEAQVC
Sbjct: 419  GENILEESENLHNFDQPLRVRGCILTLVERMDEEFTKIMQNTDPHSQEYVEHLKDEAQVC 478

Query: 1581 AIIERVQRYLEEKGTTEEICRIYLRRILHTYYKFDYKAHQRQLTPPEGSSKSEQDQAENE 1760
            AIIERVQRYLEEKGTTEEIC+IYLRRILHTYYKFDYKAHQRQLTPPEGSSKSEQDQAENE
Sbjct: 479  AIIERVQRYLEEKGTTEEICQIYLRRILHTYYKFDYKAHQRQLTPPEGSSKSEQDQAENE 538

Query: 1761 GEDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQH 1940
            GEDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQH
Sbjct: 539  GEDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQH 598

Query: 1941 SDPPVQILYNRTMVQLGICAFRQGLTKDAHNALLDIQSSGRAXXXXXXXXXXXXXXXXNQ 2120
            +DPPVQILYNRTMVQLGICAFRQGLTKDAHNALLDIQSSGRA                NQ
Sbjct: 599  ADPPVQILYNRTMVQLGICAFRQGLTKDAHNALLDIQSSGRAKELLGQGLLLRSLQERNQ 658

Query: 2121 EQEKVETRXXVPFPLHIKLKLLXCVYLVSAMLLEIPYMAAHQSDARRTLISKQFHSQLRV 2300
            EQEKVE R  VPF LHI L+LL CVYLVSAMLLEIPYMAAH+SDARR +ISKQFH QLRV
Sbjct: 659  EQEKVERRRQVPFHLHINLELLECVYLVSAMLLEIPYMAAHESDARRRMISKQFHHQLRV 718

Query: 2301 GERHPCLVPP 2330
            GER P L PP
Sbjct: 719  GERQPLLGPP 728


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 70,852,125
Number of extensions: 1865711
Number of successful extensions: 7898
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7871
Number of HSP's successfully gapped: 2
Length of query: 783
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 674
Effective length of database: 12,343,635
Effective search space: 8319609990
Effective search space used: 8319609990
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001713
         (2350 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done

 ***** No hits found ******


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 52,928,416
Number of extensions: 1437145
Number of successful extensions: 6179
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 6154
Number of HSP's successfully gapped: 0
Length of query: 783
Length of database: 11,343,932
Length adjustment: 107
Effective length of query: 676
Effective length of database: 8,679,953
Effective search space: 5867648228
Effective search space used: 5867648228
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001713
         (2350 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done

 ***** No hits found ******


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 62,993,826
Number of extensions: 488
Number of successful extensions: 488
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 488
Number of HSP's successfully gapped: 0
Length of query: 2350
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2328
Effective length of database: 2,808,408,574
Effective search space: 6537975160272
Effective search space used: 6537975160272
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)