Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001721
(1228 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039914.1| SERPINE1 mRNA binding protein 1 [Bos taurus]. 130 2e-30
Alignment gi|NP_001074992.1| intracellular hyaluronan-binding protein 4 [... 49 1e-15
>ref|NP_001039914.1| SERPINE1 mRNA binding protein 1 [Bos taurus].
Length = 176
Score = 130 bits (327), Expect = 2e-30
Identities = 68/108 (62%), Positives = 70/108 (64%)
Frame = +2
Query: 122 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 301
MPGHLQEGFGCVVTNRFDQLFDDESDPFEVL
Sbjct: 1 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQ 60
Query: 302 XXXXXXXXQLRKESQKDRKNPLPPNVGVVDKKEETQPPVALKKEGIRR 445
QLRKESQKDRKNPLPP+VGVVDKKEETQPPVALKKEG+ R
Sbjct: 61 TNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGLSR 108
>ref|NP_001074992.1| intracellular hyaluronan-binding protein 4 [Bos taurus].
Length = 417
Score = 41.6 bits (96), Expect(3) = 1e-15
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = +2
Query: 1145 FPEPANDITSQLEIHFGDLGRPERGGKG 1228
F + ANDITSQLEI+FG+L RP RG +G
Sbjct: 350 FRKAANDITSQLEINFGNLPRPGRGARG 377
Score = 40.0 bits (92), Expect(3) = 1e-15
Identities = 17/28 (60%), Positives = 20/28 (71%)
Frame = +1
Query: 979 MTLDEWKAIQNKDRAKVEFNIRKPNEVL 1062
MTLDEWK +Q + R K EFNIRKP +
Sbjct: 295 MTLDEWKNLQEQTRPKPEFNIRKPESTV 322
Score = 39.7 bits (91), Expect(3) = 1e-15
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +2
Query: 689 KREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQKQISYNCSDL 868
KREF+R+ G+D+ + + ED GG G H WG+ KD P + +
Sbjct: 217 KREFERYGGNDKIAS------RTEDNMGGYGVHTWGSGKDTSDTDP----------AAPM 260
Query: 869 EQSNVTEET--PEGEEHP 916
E++ V EE+ P +E P
Sbjct: 261 EETTVVEESLGPLEDESP 278
Score = 48.9 bits (115), Expect = 9e-06
Identities = 20/27 (74%), Positives = 23/27 (85%)
Frame = +2
Query: 134 LQEGFGCVVTNRFDQLFDDESDPFEVL 214
+QE FGCVV NRF QL DDESDPF++L
Sbjct: 18 MQESFGCVVANRFHQLLDDESDPFDIL 44
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,394,542
Number of extensions: 865735
Number of successful extensions: 2684
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2681
Number of HSP's successfully gapped: 5
Length of query: 409
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 304
Effective length of database: 14,207,134
Effective search space: 4318968736
Effective search space used: 4318968736
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001721
(1228 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536673.2| PREDICTED: similar to Plasminogen activator inh... 360 2e-99
Alignment gi|XP_541250.2| PREDICTED: similar to hyaluronan binding protei... 42 1e-09
>ref|XP_536673.2| PREDICTED: similar to Plasminogen activator inhibitor 1 RNA-binding
protein (PAI1 RNA-binding protein 1) (PAI-RBP1) [Canis
familiaris].
Length = 638
Score = 360 bits (924), Expect = 2e-99
Identities = 219/412 (53%), Positives = 233/412 (56%), Gaps = 3/412 (0%)
Frame = +2
Query: 2 EEKTAPLSQPGHLVGRAEAGALGSXXXXXXXXXXXXXXXXMPGHLQEGFGCVVTNRFDQL 181
EEK APLS+PGHLVGRAEAGALGS MPGHLQEGFGCVVTNRFDQL
Sbjct: 200 EEKPAPLSRPGHLVGRAEAGALGSARPAAIRGGTRRRATIMPGHLQEGFGCVVTNRFDQL 259
Query: 182 FDDESDPFEVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLRKESQKDRKN 361
FDDESDPFEVL QLRKESQKDRKN
Sbjct: 260 FDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQTNSSAAGKQLRKESQKDRKN 319
Query: 362 PLPPNVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDXXXXXXXXXXXXXXX 541
PLPP+VGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQ EGKIID
Sbjct: 320 PLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQSEGKIIDRRPERRPPRERRFEK 379
Query: 542 XXXXXXXXXXFSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKREFDRHSGSD 721
FSV KREFDRHSGSD
Sbjct: 380 PLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMGRGDGFDSRGKREFDRHSGSD 439
Query: 722 RSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQKQISYNCSDLEQSNVTEETPE 901
R SGLKHEDKRGGSGSHNWGTVKDELTESPKYIQKQISYNCSDL+QSNVTEETPE
Sbjct: 440 R------SGLKHEDKRGGSGSHNWGTVKDELTESPKYIQKQISYNCSDLDQSNVTEETPE 493
Query: 902 GEEHPVADTXXXXXXXXXXXXXGPKK*LWMSGRLF--KIRTGPK*NLISENQ-MKC*WAV 1072
GEEHPVADT GPK+ + K R + N+ N+ W
Sbjct: 494 GEEHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRKPNEGADGQW-- 551
Query: 1073 EKGICSS*VKE*RGSC*RLSYGSPFPEPANDITSQLEIHFGDLGRPERGGKG 1228
+KG K S + + F +PANDITSQLEI+FGDLGRP RGG+G
Sbjct: 552 KKGFVLHKSKSEETSDSVMDH--HFRKPANDITSQLEINFGDLGRPGRGGRG 601
>ref|XP_541250.2| PREDICTED: similar to hyaluronan binding protein 4 [Canis
familiaris].
Length = 315
Score = 41.6 bits (96), Expect(2) = 1e-09
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = +2
Query: 1145 FPEPANDITSQLEIHFGDLGRPERGGKG 1228
F + ANDITSQLEI+FG+L RP RG +G
Sbjct: 248 FRKAANDITSQLEINFGNLPRPGRGARG 275
Score = 40.0 bits (92), Expect(2) = 1e-09
Identities = 17/28 (60%), Positives = 20/28 (71%)
Frame = +1
Query: 979 MTLDEWKAIQNKDRAKVEFNIRKPNEVL 1062
MTLDEWK +Q + R K EFNIRKP +
Sbjct: 193 MTLDEWKNLQEQTRPKPEFNIRKPESTV 220
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,206,875
Number of extensions: 899267
Number of successful extensions: 2853
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2849
Number of HSP's successfully gapped: 7
Length of query: 409
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 304
Effective length of database: 15,374,224
Effective search space: 4673764096
Effective search space used: 4673764096
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001721
(1228 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001018077.1| plasminogen activator inhibitor 1 RNA-bindin... 337 1e-92
Alignment gi|NP_001018078.1| plasminogen activator inhibitor 1 RNA-bindin... 318 6e-87
Alignment gi|NP_001018079.1| plasminogen activator inhibitor 1 RNA-bindin... 300 1e-81
Alignment gi|NP_056455.3| plasminogen activator inhibitor 1 RNA-binding p... 281 9e-76
Alignment gi|NP_055097.2| intracellular hyaluronan-binding protein 4 [Hom... 49 5e-16
>ref|NP_001018077.1| plasminogen activator inhibitor 1 RNA-binding protein isoform 1 [Homo
sapiens].
Length = 408
Score = 337 bits (865), Expect = 1e-92
Identities = 202/373 (54%), Positives = 213/373 (57%), Gaps = 4/373 (1%)
Frame = +2
Query: 122 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 301
MPGHLQEGFGCVVTNRFDQLFDDESDPFEVL
Sbjct: 1 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQ 60
Query: 302 XXXXXXXXQLRKESQKDRKNPLPPNVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE 481
QLRKESQKDRKNPLPP+VGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE
Sbjct: 61 TNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE 120
Query: 482 GKIIDXXXXXXXXXXXXXXXXXXXXXXXXXFSVXXXXXXXXXXXXXXXXXXXXXXXXXXX 661
GKIID FSV
Sbjct: 121 GKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMG 180
Query: 662 XXXXXXXXXKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQK 841
KREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQK
Sbjct: 181 RGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQK 240
Query: 842 QISYNCSDLEQSNVTEETPEGEE-HPVADTXXXXXXXXXXXXXGPKK*LWMSGRLF--KI 1012
QISYN SDL+QSNVTEETPEGEE HPVADT GPK+ + K
Sbjct: 241 QISYNYSDLDQSNVTEETPEGEEHHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKD 300
Query: 1013 RTGPK*NLISENQ-MKC*WAVEKGICSS*VKE*RGSC*RLSYGSPFPEPANDITSQLEIH 1189
R + N+ N+ W +KG K F +PANDITSQLEI+
Sbjct: 301 RAKVEFNIRKPNEGADGQW--KKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEIN 358
Query: 1190 FGDLGRPERGGKG 1228
FGDLGRP RGG+G
Sbjct: 359 FGDLGRPGRGGRG 371
>ref|NP_001018078.1| plasminogen activator inhibitor 1 RNA-binding protein isoform 2 [Homo
sapiens].
Length = 402
Score = 318 bits (815), Expect = 6e-87
Identities = 196/373 (52%), Positives = 207/373 (55%), Gaps = 4/373 (1%)
Frame = +2
Query: 122 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 301
MPGHLQEGFGCVVTNRFDQLFDDESDPFEVL
Sbjct: 1 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQ 60
Query: 302 XXXXXXXXQLRKESQKDRKNPLPPNVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE 481
QLRKESQKDRKNPLPP+VGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE
Sbjct: 61 TNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE 120
Query: 482 GKIIDXXXXXXXXXXXXXXXXXXXXXXXXXFSVXXXXXXXXXXXXXXXXXXXXXXXXXXX 661
GKIID FSV
Sbjct: 121 GKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMG 180
Query: 662 XXXXXXXXXKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQK 841
KREFDRHSGSDR SGLKHEDKRGGSGSHNWGTVKDELTESPKYIQK
Sbjct: 181 RGDGFDSRGKREFDRHSGSDR------SGLKHEDKRGGSGSHNWGTVKDELTESPKYIQK 234
Query: 842 QISYNCSDLEQSNVTEETPEGEE-HPVADTXXXXXXXXXXXXXGPKK*LWMSGRLF--KI 1012
QISYN SDL+QSNVTEETPEGEE HPVADT GPK+ + K
Sbjct: 235 QISYNYSDLDQSNVTEETPEGEEHHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKD 294
Query: 1013 RTGPK*NLISENQ-MKC*WAVEKGICSS*VKE*RGSC*RLSYGSPFPEPANDITSQLEIH 1189
R + N+ N+ W +KG K F +PANDITSQLEI+
Sbjct: 295 RAKVEFNIRKPNEGADGQW--KKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEIN 352
Query: 1190 FGDLGRPERGGKG 1228
FGDLGRP RGG+G
Sbjct: 353 FGDLGRPGRGGRG 365
>ref|NP_001018079.1| plasminogen activator inhibitor 1 RNA-binding protein isoform 3 [Homo
sapiens].
Length = 393
Score = 300 bits (769), Expect = 1e-81
Identities = 188/373 (50%), Positives = 199/373 (53%), Gaps = 4/373 (1%)
Frame = +2
Query: 122 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 301
MPGHLQEGFGCVVTNRFDQLFDDESDPFEVL
Sbjct: 1 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQ 60
Query: 302 XXXXXXXXQLRKESQKDRKNPLPPNVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE 481
QLRKESQKDRKNPLPP+VGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE
Sbjct: 61 TNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE 120
Query: 482 GKIIDXXXXXXXXXXXXXXXXXXXXXXXXXFSVXXXXXXXXXXXXXXXXXXXXXXXXXXX 661
GKIID FSV
Sbjct: 121 GKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMG 180
Query: 662 XXXXXXXXXKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQK 841
KREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELT
Sbjct: 181 RGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELT-------- 232
Query: 842 QISYNCSDLEQSNVTEETPEGEE-HPVADTXXXXXXXXXXXXXGPKK*LWMSGRLF--KI 1012
DL+QSNVTEETPEGEE HPVADT GPK+ + K
Sbjct: 233 -------DLDQSNVTEETPEGEEHHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKD 285
Query: 1013 RTGPK*NLISENQ-MKC*WAVEKGICSS*VKE*RGSC*RLSYGSPFPEPANDITSQLEIH 1189
R + N+ N+ W +KG K F +PANDITSQLEI+
Sbjct: 286 RAKVEFNIRKPNEGADGQW--KKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEIN 343
Query: 1190 FGDLGRPERGGKG 1228
FGDLGRP RGG+G
Sbjct: 344 FGDLGRPGRGGRG 356
>ref|NP_056455.3| plasminogen activator inhibitor 1 RNA-binding protein isoform 4 [Homo
sapiens].
Length = 387
Score = 281 bits (719), Expect = 9e-76
Identities = 182/373 (48%), Positives = 193/373 (51%), Gaps = 4/373 (1%)
Frame = +2
Query: 122 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 301
MPGHLQEGFGCVVTNRFDQLFDDESDPFEVL
Sbjct: 1 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQ 60
Query: 302 XXXXXXXXQLRKESQKDRKNPLPPNVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE 481
QLRKESQKDRKNPLPP+VGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE
Sbjct: 61 TNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE 120
Query: 482 GKIIDXXXXXXXXXXXXXXXXXXXXXXXXXFSVXXXXXXXXXXXXXXXXXXXXXXXXXXX 661
GKIID FSV
Sbjct: 121 GKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMG 180
Query: 662 XXXXXXXXXKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQK 841
KREFDRHSGSDR SGLKHEDKRGGSGSHNWGTVKDELT
Sbjct: 181 RGDGFDSRGKREFDRHSGSDR------SGLKHEDKRGGSGSHNWGTVKDELT-------- 226
Query: 842 QISYNCSDLEQSNVTEETPEGEE-HPVADTXXXXXXXXXXXXXGPKK*LWMSGRLF--KI 1012
DL+QSNVTEETPEGEE HPVADT GPK+ + K
Sbjct: 227 -------DLDQSNVTEETPEGEEHHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKD 279
Query: 1013 RTGPK*NLISENQ-MKC*WAVEKGICSS*VKE*RGSC*RLSYGSPFPEPANDITSQLEIH 1189
R + N+ N+ W +KG K F +PANDITSQLEI+
Sbjct: 280 RAKVEFNIRKPNEGADGQW--KKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEIN 337
Query: 1190 FGDLGRPERGGKG 1228
FGDLGRP RGG+G
Sbjct: 338 FGDLGRPGRGGRG 350
>ref|NP_055097.2| intracellular hyaluronan-binding protein 4 [Homo sapiens].
Length = 413
Score = 44.7 bits (104), Expect(3) = 5e-16
Identities = 20/28 (71%), Positives = 24/28 (85%)
Frame = +2
Query: 1145 FPEPANDITSQLEIHFGDLGRPERGGKG 1228
F +PANDITSQLEI+FG+L RP RG +G
Sbjct: 346 FRKPANDITSQLEINFGNLPRPGRGARG 373
Score = 40.0 bits (92), Expect(3) = 5e-16
Identities = 17/28 (60%), Positives = 20/28 (71%)
Frame = +1
Query: 979 MTLDEWKAIQNKDRAKVEFNIRKPNEVL 1062
MTLDEWK +Q + R K EFNIRKP +
Sbjct: 291 MTLDEWKNLQEQTRPKPEFNIRKPESTV 318
Score = 38.1 bits (87), Expect(3) = 5e-16
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Frame = +2
Query: 689 KREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQKQISYNCSDL 868
KREF+R+ G+D+ + ++ ED GG G WG+ KD P + +
Sbjct: 213 KREFERYGGNDKIA------VRTEDNMGGCGVRTWGSGKDTSDVEP----------TAPM 256
Query: 869 EQSNVTEE---TPEGEEHP 916
E+ V EE TPE EE P
Sbjct: 257 EEPTVVEESQGTPE-EESP 274
Score = 48.9 bits (115), Expect = 9e-06
Identities = 20/27 (74%), Positives = 23/27 (85%)
Frame = +2
Query: 134 LQEGFGCVVTNRFDQLFDDESDPFEVL 214
+QE FGCVV NRF QL DDESDPF++L
Sbjct: 16 MQESFGCVVANRFHQLLDDESDPFDIL 42
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,379,497
Number of extensions: 879031
Number of successful extensions: 2749
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2736
Number of HSP's successfully gapped: 24
Length of query: 409
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 304
Effective length of database: 14,835,944
Effective search space: 4510126976
Effective search space used: 4510126976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001721
(1228 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080090.2| plasminogen activator inhibitor 1 RNA-binding p... 343 2e-94
Alignment gi|NP_001107036.1| plasminogen activator inhibitor 1 RNA-bindin... 323 1e-88
Alignment gi|NP_001107037.1| plasminogen activator inhibitor 1 RNA-bindin... 301 5e-82
Alignment gi|NP_001107038.1| plasminogen activator inhibitor 1 RNA-bindin... 282 3e-76
Alignment gi|NP_064370.2| intracellular hyaluronan-binding protein 4 [Mus... 42 6e-14
>ref|NP_080090.2| plasminogen activator inhibitor 1 RNA-binding protein isoform 1 [Mus
musculus].
Length = 407
Score = 343 bits (879), Expect = 2e-94
Identities = 200/372 (53%), Positives = 213/372 (57%), Gaps = 3/372 (0%)
Frame = +2
Query: 122 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 301
MPGHLQEGFGCVVTNRFDQLFDDESDPFEVL
Sbjct: 1 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQ 60
Query: 302 XXXXXXXXQLRKESQKDRKNPLPPNVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE 481
QLRKESQKDRKNPLPP+VGV DKKEETQPPVALKKEGIRRVGRRPDQQLQG+
Sbjct: 61 TNSNAAGKQLRKESQKDRKNPLPPSVGVADKKEETQPPVALKKEGIRRVGRRPDQQLQGD 120
Query: 482 GKIIDXXXXXXXXXXXXXXXXXXXXXXXXXFSVXXXXXXXXXXXXXXXXXXXXXXXXXXX 661
GK+ID FSV
Sbjct: 121 GKLIDRRAERRPPRERRFEKPLEEKGEGGEFSVDRPIIERPIRGRGGLGRGRGGRGRGMG 180
Query: 662 XXXXXXXXXKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQK 841
KREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQK
Sbjct: 181 RGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQK 240
Query: 842 QISYNCSDLEQSNVTEETPEGEEHPVADTXXXXXXXXXXXXXGPKK*LWMSGRLF--KIR 1015
QISYNCSDL+QSNVTEETPEGEEHPVADT GPK+ + K R
Sbjct: 241 QISYNCSDLDQSNVTEETPEGEEHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDR 300
Query: 1016 TGPK*NLISENQ-MKC*WAVEKGICSS*VKE*RGSC*RLSYGSPFPEPANDITSQLEIHF 1192
+ N+ N+ W +KG K F +PANDITSQLEI+F
Sbjct: 301 AKVEFNIRKPNEGADGQW--KKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINF 358
Query: 1193 GDLGRPERGGKG 1228
GDLGRP RGG+G
Sbjct: 359 GDLGRPGRGGRG 370
>ref|NP_001107036.1| plasminogen activator inhibitor 1 RNA-binding protein isoform 2 [Mus
musculus].
Length = 401
Score = 323 bits (829), Expect = 1e-88
Identities = 194/372 (52%), Positives = 207/372 (55%), Gaps = 3/372 (0%)
Frame = +2
Query: 122 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 301
MPGHLQEGFGCVVTNRFDQLFDDESDPFEVL
Sbjct: 1 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQ 60
Query: 302 XXXXXXXXQLRKESQKDRKNPLPPNVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE 481
QLRKESQKDRKNPLPP+VGV DKKEETQPPVALKKEGIRRVGRRPDQQLQG+
Sbjct: 61 TNSNAAGKQLRKESQKDRKNPLPPSVGVADKKEETQPPVALKKEGIRRVGRRPDQQLQGD 120
Query: 482 GKIIDXXXXXXXXXXXXXXXXXXXXXXXXXFSVXXXXXXXXXXXXXXXXXXXXXXXXXXX 661
GK+ID FSV
Sbjct: 121 GKLIDRRAERRPPRERRFEKPLEEKGEGGEFSVDRPIIERPIRGRGGLGRGRGGRGRGMG 180
Query: 662 XXXXXXXXXKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQK 841
KREFDRHSGSDR SGLKHEDKRGGSGSHNWGTVKDELTESPKYIQK
Sbjct: 181 RGDGFDSRGKREFDRHSGSDR------SGLKHEDKRGGSGSHNWGTVKDELTESPKYIQK 234
Query: 842 QISYNCSDLEQSNVTEETPEGEEHPVADTXXXXXXXXXXXXXGPKK*LWMSGRLF--KIR 1015
QISYNCSDL+QSNVTEETPEGEEHPVADT GPK+ + K R
Sbjct: 235 QISYNCSDLDQSNVTEETPEGEEHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDR 294
Query: 1016 TGPK*NLISENQ-MKC*WAVEKGICSS*VKE*RGSC*RLSYGSPFPEPANDITSQLEIHF 1192
+ N+ N+ W +KG K F +PANDITSQLEI+F
Sbjct: 295 AKVEFNIRKPNEGADGQW--KKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINF 352
Query: 1193 GDLGRPERGGKG 1228
GDLGRP RGG+G
Sbjct: 353 GDLGRPGRGGRG 364
>ref|NP_001107037.1| plasminogen activator inhibitor 1 RNA-binding protein isoform 3 [Mus
musculus].
Length = 392
Score = 301 bits (772), Expect = 5e-82
Identities = 185/372 (49%), Positives = 198/372 (53%), Gaps = 3/372 (0%)
Frame = +2
Query: 122 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 301
MPGHLQEGFGCVVTNRFDQLFDDESDPFEVL
Sbjct: 1 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQ 60
Query: 302 XXXXXXXXQLRKESQKDRKNPLPPNVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE 481
QLRKESQKDRKNPLPP+VGV DKKEETQPPVALKKEGIRRVGRRPDQQLQG+
Sbjct: 61 TNSNAAGKQLRKESQKDRKNPLPPSVGVADKKEETQPPVALKKEGIRRVGRRPDQQLQGD 120
Query: 482 GKIIDXXXXXXXXXXXXXXXXXXXXXXXXXFSVXXXXXXXXXXXXXXXXXXXXXXXXXXX 661
GK+ID FSV
Sbjct: 121 GKLIDRRAERRPPRERRFEKPLEEKGEGGEFSVDRPIIERPIRGRGGLGRGRGGRGRGMG 180
Query: 662 XXXXXXXXXKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQK 841
KREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELT
Sbjct: 181 RGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELT-------- 232
Query: 842 QISYNCSDLEQSNVTEETPEGEEHPVADTXXXXXXXXXXXXXGPKK*LWMSGRLF--KIR 1015
DL+QSNVTEETPEGEEHPVADT GPK+ + K R
Sbjct: 233 -------DLDQSNVTEETPEGEEHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDR 285
Query: 1016 TGPK*NLISENQ-MKC*WAVEKGICSS*VKE*RGSC*RLSYGSPFPEPANDITSQLEIHF 1192
+ N+ N+ W +KG K F +PANDITSQLEI+F
Sbjct: 286 AKVEFNIRKPNEGADGQW--KKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINF 343
Query: 1193 GDLGRPERGGKG 1228
GDLGRP RGG+G
Sbjct: 344 GDLGRPGRGGRG 355
>ref|NP_001107038.1| plasminogen activator inhibitor 1 RNA-binding protein isoform 4 [Mus
musculus].
Length = 386
Score = 282 bits (722), Expect = 3e-76
Identities = 179/372 (48%), Positives = 192/372 (51%), Gaps = 3/372 (0%)
Frame = +2
Query: 122 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 301
MPGHLQEGFGCVVTNRFDQLFDDESDPFEVL
Sbjct: 1 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQ 60
Query: 302 XXXXXXXXQLRKESQKDRKNPLPPNVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE 481
QLRKESQKDRKNPLPP+VGV DKKEETQPPVALKKEGIRRVGRRPDQQLQG+
Sbjct: 61 TNSNAAGKQLRKESQKDRKNPLPPSVGVADKKEETQPPVALKKEGIRRVGRRPDQQLQGD 120
Query: 482 GKIIDXXXXXXXXXXXXXXXXXXXXXXXXXFSVXXXXXXXXXXXXXXXXXXXXXXXXXXX 661
GK+ID FSV
Sbjct: 121 GKLIDRRAERRPPRERRFEKPLEEKGEGGEFSVDRPIIERPIRGRGGLGRGRGGRGRGMG 180
Query: 662 XXXXXXXXXKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQK 841
KREFDRHSGSDR SGLKHEDKRGGSGSHNWGTVKDELT
Sbjct: 181 RGDGFDSRGKREFDRHSGSDR------SGLKHEDKRGGSGSHNWGTVKDELT-------- 226
Query: 842 QISYNCSDLEQSNVTEETPEGEEHPVADTXXXXXXXXXXXXXGPKK*LWMSGRLF--KIR 1015
DL+QSNVTEETPEGEEHPVADT GPK+ + K R
Sbjct: 227 -------DLDQSNVTEETPEGEEHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDR 279
Query: 1016 TGPK*NLISENQ-MKC*WAVEKGICSS*VKE*RGSC*RLSYGSPFPEPANDITSQLEIHF 1192
+ N+ N+ W +KG K F +PANDITSQLEI+F
Sbjct: 280 AKVEFNIRKPNEGADGQW--KKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINF 337
Query: 1193 GDLGRPERGGKG 1228
GDLGRP RGG+G
Sbjct: 338 GDLGRPGRGGRG 349
>ref|NP_064370.2| intracellular hyaluronan-binding protein 4 [Mus musculus].
Length = 412
Score = 41.6 bits (96), Expect(3) = 6e-14
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = +2
Query: 1145 FPEPANDITSQLEIHFGDLGRPERGGKG 1228
F + ANDITSQLEI+FG+L RP RG +G
Sbjct: 345 FRKAANDITSQLEINFGNLPRPGRGARG 372
Score = 40.0 bits (92), Expect(3) = 6e-14
Identities = 17/28 (60%), Positives = 20/28 (71%)
Frame = +1
Query: 979 MTLDEWKAIQNKDRAKVEFNIRKPNEVL 1062
MTLDEWK +Q + R K EFNIRKP +
Sbjct: 290 MTLDEWKNLQEQTRPKPEFNIRKPESTV 317
Score = 33.9 bits (76), Expect(3) = 6e-14
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = +2
Query: 689 KREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQKQISY--NCS 862
KR+F+R+S +D+++ + ED GG G WG+ KD P ++ S C
Sbjct: 213 KRDFERYSSNDKTN-------RMEDSMGGCGIRPWGSGKDTSDTEPPAPMEETSMMEECQ 265
Query: 863 DLEQSNVTEETPEGE 907
+ PE E
Sbjct: 266 GALDEESAAKVPELE 280
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,540,853
Number of extensions: 740911
Number of successful extensions: 2075
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2067
Number of HSP's successfully gapped: 23
Length of query: 409
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 305
Effective length of database: 12,493,815
Effective search space: 3810613575
Effective search space used: 3810613575
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001721
(1228 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127984.1| PREDICTED: plasminogen activator inhibitor 1... 349 2e-96
Alignment gi|XP_003127983.1| PREDICTED: plasminogen activator inhibitor 1... 330 1e-90
Alignment gi|XP_003356484.1| PREDICTED: plasminogen activator inhibitor 1... 308 4e-84
Alignment gi|XP_003127982.1| PREDICTED: plasminogen activator inhibitor 1... 289 3e-78
Alignment gi|XP_003130667.2| PREDICTED: intracellular hyaluronan-binding ... 42 8e-10
>ref|XP_003127984.1| PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein-like
isoform 3 [Sus scrofa].
Length = 407
Score = 349 bits (896), Expect = 2e-96
Identities = 205/372 (55%), Positives = 214/372 (57%), Gaps = 3/372 (0%)
Frame = +2
Query: 122 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 301
MPGHLQEGFGCVVTNRFDQLFDDESDPFEVL
Sbjct: 1 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQ 60
Query: 302 XXXXXXXXQLRKESQKDRKNPLPPNVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE 481
QLRKESQKDRKNPLPPNVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE
Sbjct: 61 TNSNAAGKQLRKESQKDRKNPLPPNVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE 120
Query: 482 GKIIDXXXXXXXXXXXXXXXXXXXXXXXXXFSVXXXXXXXXXXXXXXXXXXXXXXXXXXX 661
GKIID FSV
Sbjct: 121 GKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMG 180
Query: 662 XXXXXXXXXKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQK 841
KREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQK
Sbjct: 181 RGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQK 240
Query: 842 QISYNCSDLEQSNVTEETPEGEEHPVADTXXXXXXXXXXXXXGPKK*LWMSGRLF--KIR 1015
QISYNCSDLEQSNVTEETPEGEEHPVADT GPK+ + K R
Sbjct: 241 QISYNCSDLEQSNVTEETPEGEEHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDR 300
Query: 1016 TGPK*NLISENQ-MKC*WAVEKGICSS*VKE*RGSC*RLSYGSPFPEPANDITSQLEIHF 1192
+ N+ N+ W +KG K F +PANDITSQLEI+F
Sbjct: 301 AKVEFNIRKPNEGADGQW--KKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINF 358
Query: 1193 GDLGRPERGGKG 1228
GDLGRP RGG+G
Sbjct: 359 GDLGRPGRGGRG 370
>ref|XP_003127983.1| PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein-like
isoform 2 [Sus scrofa].
Length = 401
Score = 330 bits (846), Expect = 1e-90
Identities = 199/372 (53%), Positives = 208/372 (55%), Gaps = 3/372 (0%)
Frame = +2
Query: 122 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 301
MPGHLQEGFGCVVTNRFDQLFDDESDPFEVL
Sbjct: 1 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQ 60
Query: 302 XXXXXXXXQLRKESQKDRKNPLPPNVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE 481
QLRKESQKDRKNPLPPNVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE
Sbjct: 61 TNSNAAGKQLRKESQKDRKNPLPPNVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE 120
Query: 482 GKIIDXXXXXXXXXXXXXXXXXXXXXXXXXFSVXXXXXXXXXXXXXXXXXXXXXXXXXXX 661
GKIID FSV
Sbjct: 121 GKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMG 180
Query: 662 XXXXXXXXXKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQK 841
KREFDRHSGSDR SGLKHEDKRGGSGSHNWGTVKDELTESPKYIQK
Sbjct: 181 RGDGFDSRGKREFDRHSGSDR------SGLKHEDKRGGSGSHNWGTVKDELTESPKYIQK 234
Query: 842 QISYNCSDLEQSNVTEETPEGEEHPVADTXXXXXXXXXXXXXGPKK*LWMSGRLF--KIR 1015
QISYNCSDLEQSNVTEETPEGEEHPVADT GPK+ + K R
Sbjct: 235 QISYNCSDLEQSNVTEETPEGEEHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDR 294
Query: 1016 TGPK*NLISENQ-MKC*WAVEKGICSS*VKE*RGSC*RLSYGSPFPEPANDITSQLEIHF 1192
+ N+ N+ W +KG K F +PANDITSQLEI+F
Sbjct: 295 AKVEFNIRKPNEGADGQW--KKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINF 352
Query: 1193 GDLGRPERGGKG 1228
GDLGRP RGG+G
Sbjct: 353 GDLGRPGRGGRG 364
>ref|XP_003356484.1| PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein-like
[Sus scrofa].
Length = 392
Score = 308 bits (789), Expect = 4e-84
Identities = 190/372 (51%), Positives = 199/372 (53%), Gaps = 3/372 (0%)
Frame = +2
Query: 122 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 301
MPGHLQEGFGCVVTNRFDQLFDDESDPFEVL
Sbjct: 1 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQ 60
Query: 302 XXXXXXXXQLRKESQKDRKNPLPPNVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE 481
QLRKESQKDRKNPLPPNVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE
Sbjct: 61 TNSNAAGKQLRKESQKDRKNPLPPNVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE 120
Query: 482 GKIIDXXXXXXXXXXXXXXXXXXXXXXXXXFSVXXXXXXXXXXXXXXXXXXXXXXXXXXX 661
GKIID FSV
Sbjct: 121 GKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMG 180
Query: 662 XXXXXXXXXKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQK 841
KREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELT
Sbjct: 181 RGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELT-------- 232
Query: 842 QISYNCSDLEQSNVTEETPEGEEHPVADTXXXXXXXXXXXXXGPKK*LWMSGRLF--KIR 1015
DLEQSNVTEETPEGEEHPVADT GPK+ + K R
Sbjct: 233 -------DLEQSNVTEETPEGEEHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDR 285
Query: 1016 TGPK*NLISENQ-MKC*WAVEKGICSS*VKE*RGSC*RLSYGSPFPEPANDITSQLEIHF 1192
+ N+ N+ W +KG K F +PANDITSQLEI+F
Sbjct: 286 AKVEFNIRKPNEGADGQW--KKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINF 343
Query: 1193 GDLGRPERGGKG 1228
GDLGRP RGG+G
Sbjct: 344 GDLGRPGRGGRG 355
>ref|XP_003127982.1| PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein-like
isoform 1 [Sus scrofa].
Length = 386
Score = 289 bits (739), Expect = 3e-78
Identities = 184/372 (49%), Positives = 193/372 (51%), Gaps = 3/372 (0%)
Frame = +2
Query: 122 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 301
MPGHLQEGFGCVVTNRFDQLFDDESDPFEVL
Sbjct: 1 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQ 60
Query: 302 XXXXXXXXQLRKESQKDRKNPLPPNVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE 481
QLRKESQKDRKNPLPPNVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE
Sbjct: 61 TNSNAAGKQLRKESQKDRKNPLPPNVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE 120
Query: 482 GKIIDXXXXXXXXXXXXXXXXXXXXXXXXXFSVXXXXXXXXXXXXXXXXXXXXXXXXXXX 661
GKIID FSV
Sbjct: 121 GKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMG 180
Query: 662 XXXXXXXXXKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQK 841
KREFDRHSGSDR SGLKHEDKRGGSGSHNWGTVKDELT
Sbjct: 181 RGDGFDSRGKREFDRHSGSDR------SGLKHEDKRGGSGSHNWGTVKDELT-------- 226
Query: 842 QISYNCSDLEQSNVTEETPEGEEHPVADTXXXXXXXXXXXXXGPKK*LWMSGRLF--KIR 1015
DLEQSNVTEETPEGEEHPVADT GPK+ + K R
Sbjct: 227 -------DLEQSNVTEETPEGEEHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDR 279
Query: 1016 TGPK*NLISENQ-MKC*WAVEKGICSS*VKE*RGSC*RLSYGSPFPEPANDITSQLEIHF 1192
+ N+ N+ W +KG K F +PANDITSQLEI+F
Sbjct: 280 AKVEFNIRKPNEGADGQW--KKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINF 337
Query: 1193 GDLGRPERGGKG 1228
GDLGRP RGG+G
Sbjct: 338 GDLGRPGRGGRG 349
>ref|XP_003130667.2| PREDICTED: intracellular hyaluronan-binding protein 4-like, partial
[Sus scrofa].
Length = 242
Score = 41.6 bits (96), Expect(2) = 8e-10
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = +2
Query: 1145 FPEPANDITSQLEIHFGDLGRPERGGKG 1228
F + ANDITSQLEI+FG+L RP RG +G
Sbjct: 175 FRKAANDITSQLEINFGNLPRPGRGARG 202
Score = 40.0 bits (92), Expect(2) = 8e-10
Identities = 17/28 (60%), Positives = 20/28 (71%)
Frame = +1
Query: 979 MTLDEWKAIQNKDRAKVEFNIRKPNEVL 1062
MTLDEWK +Q + R K EFNIRKP +
Sbjct: 120 MTLDEWKNLQEQTRPKPEFNIRKPESTV 147
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,086,898
Number of extensions: 556840
Number of successful extensions: 1661
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1653
Number of HSP's successfully gapped: 22
Length of query: 409
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 308
Effective length of database: 8,829,335
Effective search space: 2719435180
Effective search space used: 2719435180
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001721
(1228 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 862 0.0
>Sscrofa_Chr06
|| Length = 157765593
Score = 862 bits (435), Expect = 0.0
Identities = 435/435 (100%)
Strand = Plus / Plus
Query: 1 ggaagagaagacggcccccctctcgcagcccggccatcttgtgggaagagctgaagcagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134068971 ggaagagaagacggcccccctctcgcagcccggccatcttgtgggaagagctgaagcagg 134069030
Query: 61 cgctcttggctcggcgcggcccgctgcaatccgtggaggaacgcgccgccgagccaccat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134069031 cgctcttggctcggcgcggcccgctgcaatccgtggaggaacgcgccgccgagccaccat 134069090
Query: 121 catgcctgggcacttacaggaaggcttcggctgcgtggtcaccaaccgattcgaccagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134069091 catgcctgggcacttacaggaaggcttcggctgcgtggtcaccaaccgattcgaccagtt 134069150
Query: 181 atttgacgacgaatcggaccccttcgaggtgttgaaggcagcagagaacaagaaaaaaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134069151 atttgacgacgaatcggaccccttcgaggtgttgaaggcagcagagaacaagaaaaaaga 134069210
Query: 241 agccggcgggggcggcgttgggggccctggggccaagagcgcagctcaggccgcagcgca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134069211 agccggcgggggcggcgttgggggccctggggccaagagcgcagctcaggccgcagcgca 134069270
Query: 301 gaccaactccaacgcggcgggcaaacagctgcgtaaagaatcccagaaagaccgcaagaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134069271 gaccaactccaacgcggcgggcaaacagctgcgtaaagaatcccagaaagaccgcaagaa 134069330
Query: 361 cccgctgccccccaacgttggcgtggttgacaagaaggaggagacgcagccgcctgtggc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134069331 cccgctgccccccaacgttggcgtggttgacaagaaggaggagacgcagccgcctgtggc 134069390
Query: 421 gcttaagaaagaagg 435
|||||||||||||||
Sbjct: 134069391 gcttaagaaagaagg 134069405
Score = 303 bits (153), Expect = 1e-79
Identities = 153/153 (100%)
Strand = Plus / Plus
Query: 433 aggaataagacgtgttggaagaagacctgatcaacaacttcagggtgaagggaagataat 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134072883 aggaataagacgtgttggaagaagacctgatcaacaacttcagggtgaagggaagataat 134072942
Query: 493 tgataggagaccagaaaggcgaccacctcgtgaaagacgatttgaaaagccacttgaaga 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134072943 tgataggagaccagaaaggcgaccacctcgtgaaagacgatttgaaaagccacttgaaga 134073002
Query: 553 aaagggtgaaggaggagaattttcagttgatag 585
|||||||||||||||||||||||||||||||||
Sbjct: 134073003 aaagggtgaaggaggagaattttcagttgatag 134073035
Score = 285 bits (144), Expect = 3e-74
Identities = 144/144 (100%)
Strand = Plus / Plus
Query: 583 tagaccgattattgaccggcctatccgaggccgtggtggtcttggaagaggtcgaggagg 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134073637 tagaccgattattgaccggcctatccgaggccgtggtggtcttggaagaggtcgaggagg 134073696
Query: 643 ccgtggacgtggaatgggccggggagatggttttgattctcgtggcaaacgtgaatttga 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134073697 ccgtggacgtggaatgggccggggagatggttttgattctcgtggcaaacgtgaatttga 134073756
Query: 703 taggcatagtggaagtgatagatc 726
||||||||||||||||||||||||
Sbjct: 134073757 taggcatagtggaagtgatagatc 134073780
Score = 274 bits (138), Expect = 1e-70
Identities = 169/179 (94%), Gaps = 2/179 (1%)
Strand = Plus / Plus
Query: 937 ggagaacgaagttgaagaagtaaaggaagagggtccnnnnnnn-tgactttggatgagtg 995
|||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 134077510 ggagaacgaagttgaagaagtaaaggaagagggtccaaaagaaatgactttggatgagtg 134077569
Query: 996 gaaggctattcaaaataaggaccgggccaaagtagaatttaatatccgaaaaccaaatga 1055
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 134077570 gaaggctattcaaaataaggaccgggcaaaagtagaatttaatatccgaaaaccaaatga 134077629
Query: 1056 a-gtgctgatgggcagtggaaaaagggatttgttcttcataagtcaaagagtgaagagg 1113
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134077630 aggtgctgatgggcagtggaaaaagggatttgttcttcataagtcaaagagtgaagagg 134077688
Score = 240 bits (121), Expect = 1e-60
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 817 agagtccccaaaatacattcagaaacaaatatcttataattgcagtgacttggagcaatc 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134074579 agagtccccaaaatacattcagaaacaaatatcttataattgcagtgacttggagcaatc 134074638
Query: 877 aaatgtgactgaggaaacacctgaaggtgaagaacatcccgttgcggacacagaaaataa 936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134074639 aaatgtgactgaggaaacacctgaaggtgaagaacatcccgttgcggacacagaaaataa 134074698
Query: 937 g 937
|
Sbjct: 134074699 g 134074699
Score = 180 bits (91), Expect = 1e-42
Identities = 113/119 (94%), Gaps = 1/119 (0%)
Strand = Plus / Plus
Query: 1111 aggctcatgctgaagactcagttatggatcaccatttccgga-gccagcaaatgatataa 1169
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 134080291 aggctcatgctgaagactcagttatggatcaccatttccggaagccagcaaatgatataa 134080350
Query: 1170 cgtctcagctggagattcattttggagaccttgggcgcccagaacgtggtggcaaggga 1228
|||||||||||||||| |||||||||||||||| ||||||| ||||||||||| ||||
Sbjct: 134080351 cgtctcagctggagatcaattttggagaccttggccgcccaggacgtggtggcagggga 134080409
Score = 178 bits (90), Expect = 5e-42
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 727 ttctttttcacattacagtggcctgaagcatgaggacaaacgtggaggtagcggatctca 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134073893 ttctttttcacattacagtggcctgaagcatgaggacaaacgtggaggtagcggatctca 134073952
Query: 787 caactggggaactgtcaaagatgaattaac 816
||||||||||||||||||||||||||||||
Sbjct: 134073953 caactggggaactgtcaaagatgaattaac 134073982
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,815,735
Number of extensions: 207
Number of successful extensions: 207
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 8
Length of query: 1228
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1207
Effective length of database: 2,808,413,156
Effective search space: 3389754679292
Effective search space used: 3389754679292
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)