Animal-Genome cDNA 20110601C-001752


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001752
         (1104 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001160038.1| ribonuclease H2 subunit B [Bos taurus].           402   e-112

>ref|NP_001160038.1| ribonuclease H2 subunit B [Bos taurus].
          Length = 309

 Score =  402 bits (1034), Expect = e-112
 Identities = 210/301 (69%), Positives = 225/301 (74%), Gaps = 3/301 (0%)
 Frame = +2

Query: 206  AGSMDRRDGACGRQHVFLVPEYLKDASKKMKNGLMFVKLVNPCSGEGAIYLFNMCLPQLF 385
            A   D  DGA   QHVFL+PEYLKD SKKMK+GL+FVKL NPCSGEG IYLFNMCLPQLF
Sbjct: 2    ARGADGGDGASVWQHVFLLPEYLKDDSKKMKSGLVFVKLANPCSGEGTIYLFNMCLPQLF 61

Query: 386  EIKVFKEKHHSWFINESVQSGGLLHFATPMDPLFLLLHYLMKAGKE---GKFQPIDQVVM 556
            EIKVFKEK+HSWFINESVQSGGLLHFATP+DPLFLLLHYL+KA KE   GKFQP+DQVVM
Sbjct: 62   EIKVFKEKNHSWFINESVQSGGLLHFATPVDPLFLLLHYLIKADKESFQGKFQPLDQVVM 121

Query: 557  DDMFPNCIXXXXXXXXXXXXRHVTXXXXXXXXXXXXXXXXXXXXWLEKKVHQTVAALKTN 736
            DDMFP+CI            +HVT                    WL KKV+QT+AALKTN
Sbjct: 122  DDMFPDCILLLKLPELEKLLQHVTEEKEVDKKKYYKYSKEKTLKWLGKKVNQTMAALKTN 181

Query: 737  NVNVGARVQSTAFFFGDQASIDKEEDYIRYAHGLISDYIPKELSDDLSKYLXXXXXXXXX 916
             VNV ARVQSTAFF G Q S DK+EDY+RYAHGLISDYIPK+LSDDLSKYL         
Sbjct: 182  KVNVSARVQSTAFFSGGQVSSDKDEDYVRYAHGLISDYIPKQLSDDLSKYLKLPEPPASV 241

Query: 917  XXXXXXXXXXSDEPVEAKEDYTKFNRKDLKTVKKNSKMTASQKALAKVDKSGMKSIDSFF 1096
                      SDEPV AKEDYTKFN KD KTVKKNSKMTA+QKALAKVDKSGMKSIDSFF
Sbjct: 242  RNPPSKKAKLSDEPVMAKEDYTKFNSKDFKTVKKNSKMTAAQKALAKVDKSGMKSIDSFF 301

Query: 1097 G 1099
            G
Sbjct: 302  G 302


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,017,871
Number of extensions: 837299
Number of successful extensions: 2637
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2634
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 264
Effective length of database: 14,240,222
Effective search space: 3759418608
Effective search space used: 3759418608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001752
         (1104 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_848995.1| PREDICTED: similar to CG11164-PA [Canis familia...   370   e-102

>ref|XP_848995.1| PREDICTED: similar to CG11164-PA [Canis familiaris].
          Length = 279

 Score =  370 bits (951), Expect = e-102
 Identities = 189/268 (70%), Positives = 203/268 (75%)
 Frame = +2

Query: 293  MKNGLMFVKLVNPCSGEGAIYLFNMCLPQLFEIKVFKEKHHSWFINESVQSGGLLHFATP 472
            MK+GLMFVKLVNPCSGEG IYLF++CL QLFEIKVFKEKHHSWFI++SVQSGGLLHFATP
Sbjct: 1    MKSGLMFVKLVNPCSGEGTIYLFDLCLQQLFEIKVFKEKHHSWFIDQSVQSGGLLHFATP 60

Query: 473  MDPLFLLLHYLMKAGKEGKFQPIDQVVMDDMFPNCIXXXXXXXXXXXXRHVTXXXXXXXX 652
            MDPLFLLLHYL KA KEGKFQP+DQVV+DD FPNCI            +HVT        
Sbjct: 61   MDPLFLLLHYLRKADKEGKFQPLDQVVLDDTFPNCILLLRLPDLEKLLQHVTEEKEVDKK 120

Query: 653  XXXXXXXXXXXXWLEKKVHQTVAALKTNNVNVGARVQSTAFFFGDQASIDKEEDYIRYAH 832
                        WL KKV QTV+ALKTNNVNV ARVQ+TAFF GD  S DKEEDY+ YAH
Sbjct: 121  KYYKYSKEKTIKWLGKKVQQTVSALKTNNVNVSARVQATAFFSGDPFSSDKEEDYVCYAH 180

Query: 833  GLISDYIPKELSDDLSKYLXXXXXXXXXXXXXXXXXXXSDEPVEAKEDYTKFNRKDLKTV 1012
            GLISDYIPKELSDDL+KYL                   SDEP+EAKEDYTKFNRKDLKT 
Sbjct: 181  GLISDYIPKELSDDLAKYLKLPEPSVPLPSPPSKKVKVSDEPIEAKEDYTKFNRKDLKTE 240

Query: 1013 KKNSKMTASQKALAKVDKSGMKSIDSFF 1096
            KKNSKMTA+QKALAKVDKSGMKSIDSFF
Sbjct: 241  KKNSKMTAAQKALAKVDKSGMKSIDSFF 268


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,420,706
Number of extensions: 840000
Number of successful extensions: 2695
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2693
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 264
Effective length of database: 15,407,560
Effective search space: 4067595840
Effective search space used: 4067595840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001752
         (1104 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_078846.2| ribonuclease H2 subunit B isoform 1 [Homo sapie...   420   e-117
Alignment   gi|NP_001135751.1| ribonuclease H2 subunit B isoform 2 [Homo sa...   336   2e-92

>ref|NP_078846.2| ribonuclease H2 subunit B isoform 1 [Homo sapiens].
          Length = 312

 Score =  420 bits (1080), Expect = e-117
 Identities = 218/301 (72%), Positives = 231/301 (76%), Gaps = 3/301 (0%)
 Frame = +2

Query: 206  AGSMDRRDGACGRQHVFLVPEYLKDASKKMKNGLMFVKLVNPCSGEGAIYLFNMCLPQLF 385
            A  +D  DG   RQHVFLV EYLKDASKKMKNGLMFVKLVNPCSGEGAIYLFNMCL QLF
Sbjct: 2    AAGVDCGDGVGARQHVFLVSEYLKDASKKMKNGLMFVKLVNPCSGEGAIYLFNMCLQQLF 61

Query: 386  EIKVFKEKHHSWFINESVQSGGLLHFATPMDPLFLLLHYLMKAGKEGKFQPIDQVVMDDM 565
            E+KVFKEKHHSWFIN+SVQSGGLLHFATP+DPLFLLLHYL+KA KEGKFQP+DQVV+D++
Sbjct: 62   EVKVFKEKHHSWFINQSVQSGGLLHFATPVDPLFLLLHYLIKADKEGKFQPLDQVVVDNV 121

Query: 566  FPNCIXXXXXXXXXXXXRHVT---XXXXXXXXXXXXXXXXXXXXWLEKKVHQTVAALKTN 736
            FPNCI             HVT                       WLEKKV+QTVAALKTN
Sbjct: 122  FPNCILLLKLPGLEKLLHHVTEEKGNPEIDNKKYYKYSKEKTLKWLEKKVNQTVAALKTN 181

Query: 737  NVNVGARVQSTAFFFGDQASIDKEEDYIRYAHGLISDYIPKELSDDLSKYLXXXXXXXXX 916
            NVNV +RVQSTAFF GDQAS DKEEDYIRYAHGLISDYIPKELSDDLSKYL         
Sbjct: 182  NVNVSSRVQSTAFFSGDQASTDKEEDYIRYAHGLISDYIPKELSDDLSKYLKLPEPSASL 241

Query: 917  XXXXXXXXXXSDEPVEAKEDYTKFNRKDLKTVKKNSKMTASQKALAKVDKSGMKSIDSFF 1096
                      SDEPVEAKEDYTKFN KDLKT KKNSKMTA+QKALAKVDKSGMKSID+FF
Sbjct: 242  PNPPSKKIKLSDEPVEAKEDYTKFNTKDLKTEKKNSKMTAAQKALAKVDKSGMKSIDTFF 301

Query: 1097 G 1099
            G
Sbjct: 302  G 302


>ref|NP_001135751.1| ribonuclease H2 subunit B isoform 2 [Homo sapiens].
          Length = 257

 Score =  336 bits (862), Expect = 2e-92
 Identities = 171/231 (74%), Positives = 182/231 (78%), Gaps = 3/231 (1%)
 Frame = +2

Query: 206 AGSMDRRDGACGRQHVFLVPEYLKDASKKMKNGLMFVKLVNPCSGEGAIYLFNMCLPQLF 385
           A  +D  DG   RQHVFLV EYLKDASKKMKNGLMFVKLVNPCSGEGAIYLFNMCL QLF
Sbjct: 2   AAGVDCGDGVGARQHVFLVSEYLKDASKKMKNGLMFVKLVNPCSGEGAIYLFNMCLQQLF 61

Query: 386 EIKVFKEKHHSWFINESVQSGGLLHFATPMDPLFLLLHYLMKAGKEGKFQPIDQVVMDDM 565
           E+KVFKEKHHSWFIN+SVQSGGLLHFATP+DPLFLLLHYL+KA KEGKFQP+DQVV+D++
Sbjct: 62  EVKVFKEKHHSWFINQSVQSGGLLHFATPVDPLFLLLHYLIKADKEGKFQPLDQVVVDNV 121

Query: 566 FPNCIXXXXXXXXXXXXRHVT---XXXXXXXXXXXXXXXXXXXXWLEKKVHQTVAALKTN 736
           FPNCI             HVT                       WLEKKV+QTVAALKTN
Sbjct: 122 FPNCILLLKLPGLEKLLHHVTEEKGNPEIDNKKYYKYSKEKTLKWLEKKVNQTVAALKTN 181

Query: 737 NVNVGARVQSTAFFFGDQASIDKEEDYIRYAHGLISDYIPKELSDDLSKYL 889
           NVNV +RVQSTAFF GDQAS DKEEDYIRYAHGLISDYIPKELSDDLSKYL
Sbjct: 182 NVNVSSRVQSTAFFSGDQASTDKEEDYIRYAHGLISDYIPKELSDDLSKYL 232


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,704,804
Number of extensions: 827940
Number of successful extensions: 2756
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2753
Number of HSP's successfully gapped: 2
Length of query: 368
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 264
Effective length of database: 14,868,908
Effective search space: 3925391712
Effective search space used: 3925391712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001752
         (1104 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_080277.1| ribonuclease H2 subunit B [Mus musculus].            390   e-108

>ref|NP_080277.1| ribonuclease H2 subunit B [Mus musculus].
          Length = 308

 Score =  390 bits (1002), Expect = e-108
 Identities = 206/300 (68%), Positives = 224/300 (74%), Gaps = 1/300 (0%)
 Frame = +2

Query: 206  AGSMDRRDGACGRQHVFLVPEYLKDASKKMK-NGLMFVKLVNPCSGEGAIYLFNMCLPQL 382
            AG  DR D A  RQ VFL+PE+LKDASKK K + L+FVKL NP SGEGA YL +MCL QL
Sbjct: 2    AGGRDRGDLAA-RQLVFLLPEHLKDASKKKKKSSLLFVKLANPHSGEGATYLIDMCLQQL 60

Query: 383  FEIKVFKEKHHSWFINESVQSGGLLHFATPMDPLFLLLHYLMKAGKEGKFQPIDQVVMDD 562
            FEIKVFKEKHHSWFIN+SVQSGGLLHFATPMDPLFLLLHYL+KAGKEGK+QP+DQVV+DD
Sbjct: 61   FEIKVFKEKHHSWFINQSVQSGGLLHFATPMDPLFLLLHYLLKAGKEGKYQPLDQVVVDD 120

Query: 563  MFPNCIXXXXXXXXXXXXRHVTXXXXXXXXXXXXXXXXXXXXWLEKKVHQTVAALKTNNV 742
             FP+C             RHVT                    WLEKKV+QTV ALK NNV
Sbjct: 121  TFPDCTLLLRFPELEKSLRHVTEEKEVNSKKYYKYSSEKTLKWLEKKVNQTVVALKANNV 180

Query: 743  NVGARVQSTAFFFGDQASIDKEEDYIRYAHGLISDYIPKELSDDLSKYLXXXXXXXXXXX 922
            NVGARVQS+A+F G Q S DKEEDY+RYAHGLISDYIPKELSDDLSK+L           
Sbjct: 181  NVGARVQSSAYFSGGQVSRDKEEDYVRYAHGLISDYIPKELSDDLSKFLKLPEPPASLTN 240

Query: 923  XXXXXXXXSDEPVEAKEDYTKFNRKDLKTVKKNSKMTASQKALAKVDKSGMKSIDSFFGA 1102
                    SDEPVEAKEDYTKFN KDLKT KKNSKMTA+QKALAKVDKSGMKSID+FFGA
Sbjct: 241  PPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKSGMKSIDAFFGA 300


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,426,177
Number of extensions: 702434
Number of successful extensions: 2097
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2092
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 265
Effective length of database: 12,523,851
Effective search space: 3318820515
Effective search space used: 3318820515
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001752
         (1104 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003360749.1| PREDICTED: ribonuclease H2 subunit B-like [S...   437   e-123

>ref|XP_003360749.1| PREDICTED: ribonuclease H2 subunit B-like [Sus scrofa].
          Length = 425

 Score =  437 bits (1125), Expect = e-123
 Identities = 228/282 (80%), Positives = 229/282 (81%), Gaps = 3/282 (1%)
 Frame = +2

Query: 266  EYLKDASKKMKNGLMFVKLVNPCSGEGAIYLFNMCLPQLFEIKVFKEKHHSWFINESVQS 445
            EYLKDASKKMKNGLMFVKLVNPCSGEGAIYLFNMCLPQLFEIKVFKEKHHSWFINESVQS
Sbjct: 135  EYLKDASKKMKNGLMFVKLVNPCSGEGAIYLFNMCLPQLFEIKVFKEKHHSWFINESVQS 194

Query: 446  GGLLHFATPMDPLFLLLHYLMKAGKEGKFQPIDQVVMDDMFPNCIXXXXXXXXXXXXRHV 625
            GGLLHFATPMDPLFLLLHYLMKAGKEGKFQPIDQVVMDDMFPNCI            RHV
Sbjct: 195  GGLLHFATPMDPLFLLLHYLMKAGKEGKFQPIDQVVMDDMFPNCILLLKLPELEKLLRHV 254

Query: 626  T---XXXXXXXXXXXXXXXXXXXXWLEKKVHQTVAALKTNNVNVGARVQSTAFFFGDQAS 796
            T                       WLEKKVHQTVAALKTNNVNVGARVQSTAFFFGDQAS
Sbjct: 255  TEXXXNPEIDKKKYYKYSKEKTLKWLEKKVHQTVAALKTNNVNVGARVQSTAFFFGDQAS 314

Query: 797  IDKEEDYIRYAHGLISDYIPKELSDDLSKYLXXXXXXXXXXXXXXXXXXXSDEPVEAKED 976
            IDKEEDYIRYAHGLISDYIPK+LSDDLSKYL                   SDEPVEAKED
Sbjct: 315  IDKEEDYIRYAHGLISDYIPKDLSDDLSKYLKLPAPPASVPNPPSKKVKLSDEPVEAKED 374

Query: 977  YTKFNRKDLKTVKKNSKMTASQKALAKVDKSGMKSIDSFFGA 1102
            YTKFNRKDLKTVKKNSKMTASQKALAKVDKSGMKSIDSFFGA
Sbjct: 375  YTKFNRKDLKTVKKNSKMTASQKALAKVDKSGMKSIDSFFGA 416


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,749,743
Number of extensions: 567928
Number of successful extensions: 1699
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1697
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 268
Effective length of database: 8,854,232
Effective search space: 2372934176
Effective search space used: 2372934176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001752
         (1104 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL892680.2| Sus scrofa unplaced genomic scaffold ChrUScaf566       222   3e-55

>gb|GL892680.2| Sus scrofa unplaced genomic scaffold ChrUScaf566
          Length = 213846

 Score =  222 bits (112), Expect = 3e-55
 Identities = 112/112 (100%)
 Strand = Plus / Minus

                                                                          
Query: 336    caggggaaggagccatttacttgttcaatatgtgtctaccgcagctgtttgaaataaaag 395
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181737 caggggaaggagccatttacttgttcaatatgtgtctaccgcagctgtttgaaataaaag 181678

                                                                  
Query: 396    ttttcaaggaaaaacaccattcttggtttataaatgagtccgttcaatcagg 447
              ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181677 ttttcaaggaaaaacaccattcttggtttataaatgagtccgttcaatcagg 181626



 Score =  218 bits (110), Expect = 5e-54
 Identities = 110/110 (100%)
 Strand = Plus / Minus

                                                                          
Query: 522    agggaaagtttcagcccatagatcaagttgtgatggatgatatgtttccaaattgcatct 581
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174851 agggaaagtttcagcccatagatcaagttgtgatggatgatatgtttccaaattgcatct 174792

                                                                
Query: 582    tgttgctgaaacttcctgaacttgagaagttacttcgacacgtgacagag 631
              ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174791 tgttgctgaaacttcctgaacttgagaagttacttcgacacgtgacagag 174742



 Score =  212 bits (107), Expect = 3e-52
 Identities = 107/107 (100%)
 Strand = Plus / Minus

                                                                          
Query: 703    ggtccatcagactgtagcagctttgaaaaccaataacgtaaatgtcggtgcccgggtaca 762
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161923 ggtccatcagactgtagcagctttgaaaaccaataacgtaaatgtcggtgcccgggtaca 161864

                                                             
Query: 763    gtccactgcgtttttcttcggtgaccaggcttccattgacaaggaag 809
              |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161863 gtccactgcgtttttcttcggtgaccaggcttccattgacaaggaag 161817



 Score =  180 bits (91), Expect = 1e-42
 Identities = 91/91 (100%)
 Strand = Plus / Minus

                                                                          
Query: 1014   agaaaaatagcaaaatgactgcatctcagaaggctttggctaaagttgacaagagtggaa 1073
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141547 agaaaaatagcaaaatgactgcatctcagaaggctttggctaaagttgacaagagtggaa 141488

                                             
Query: 1074   tgaaaagtatcgattccttttttggggcaaa 1104
              |||||||||||||||||||||||||||||||
Sbjct: 141487 tgaaaagtatcgattccttttttggggcaaa 141457



 Score =  165 bits (83), Expect = 6e-38
 Identities = 83/83 (100%)
 Strand = Plus / Minus

                                                                          
Query: 933    agaaagtaaagttatcagatgagcccgtagaagcaaaagaagattacactaagtttaaca 992
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144441 agaaagtaaagttatcagatgagcccgtagaagcaaaagaagattacactaagtttaaca 144382

                                     
Query: 993    ggaaagatctgaagactgtaaag 1015
              |||||||||||||||||||||||
Sbjct: 144381 ggaaagatctgaagactgtaaag 144359



 Score =  161 bits (81), Expect = 1e-36
 Identities = 81/81 (100%)
 Strand = Plus / Minus

                                                                          
Query: 444    caggcggtctcctccactttgccacccccatggaccctctgtttctgctcctccactacc 503
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179060 caggcggtctcctccactttgccacccccatggaccctctgtttctgctcctccactacc 179001

                                   
Query: 504    ttatgaaggctgggaaagagg 524
              |||||||||||||||||||||
Sbjct: 179000 ttatgaaggctgggaaagagg 178980



 Score =  153 bits (77), Expect = 2e-34
 Identities = 83/85 (97%)
 Strand = Plus / Minus

                                                                          
Query: 808    agaggattatattcgttatgcccatggtctgatatctgattacatacctaaagaattaag 867
              |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 159011 agaggattatattcgttatgcccatggtctgatatctgattacatacctaaagatttaag 158952

                                       
Query: 868    tgatgacttatccaagtatttgaag 892
              ||| |||||||||||||||||||||
Sbjct: 158951 tgacgacttatccaagtatttgaag 158927



 Score =  151 bits (76), Expect = 1e-33
 Identities = 76/76 (100%)
 Strand = Plus / Minus

                                                                          
Query: 264    cagaatatttaaaagatgcttcaaagaagatgaaaaatgggcttatgtttgtgaaattgg 323
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183493 cagaatatttaaaagatgcttcaaagaagatgaaaaatgggcttatgtttgtgaaattgg 183434

                              
Query: 324    ttaacccgtgttcagg 339
              ||||||||||||||||
Sbjct: 183433 ttaacccgtgttcagg 183418



 Score =  117 bits (59), Expect = 1e-23
 Identities = 59/59 (100%)
 Strand = Plus / Minus

                                                                         
Query: 637    agaaatagacaagaagaaatattacaagtacagcaaagagaagacattaaaatggctgg 695
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163956 agaaatagacaagaagaaatattacaagtacagcaaagagaagacattaaaatggctgg 163898



 Score = 85.7 bits (43), Expect = 5e-14
 Identities = 43/43 (100%)
 Strand = Plus / Minus

                                                         
Query: 892    gcttccagcacctccagcgtcagtgccaaaccctccatcaaag 934
              |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155010 gcttccagcacctccagcgtcagtgccaaaccctccatcaaag 154968


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,850,824
Number of extensions: 272
Number of successful extensions: 272
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 272
Number of HSP's successfully gapped: 10
Length of query: 1104
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1083
Effective length of database: 2,808,413,156
Effective search space: 3041511447948
Effective search space used: 3041511447948
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)