Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001752
(1104 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001160038.1| ribonuclease H2 subunit B [Bos taurus]. 402 e-112
>ref|NP_001160038.1| ribonuclease H2 subunit B [Bos taurus].
Length = 309
Score = 402 bits (1034), Expect = e-112
Identities = 210/301 (69%), Positives = 225/301 (74%), Gaps = 3/301 (0%)
Frame = +2
Query: 206 AGSMDRRDGACGRQHVFLVPEYLKDASKKMKNGLMFVKLVNPCSGEGAIYLFNMCLPQLF 385
A D DGA QHVFL+PEYLKD SKKMK+GL+FVKL NPCSGEG IYLFNMCLPQLF
Sbjct: 2 ARGADGGDGASVWQHVFLLPEYLKDDSKKMKSGLVFVKLANPCSGEGTIYLFNMCLPQLF 61
Query: 386 EIKVFKEKHHSWFINESVQSGGLLHFATPMDPLFLLLHYLMKAGKE---GKFQPIDQVVM 556
EIKVFKEK+HSWFINESVQSGGLLHFATP+DPLFLLLHYL+KA KE GKFQP+DQVVM
Sbjct: 62 EIKVFKEKNHSWFINESVQSGGLLHFATPVDPLFLLLHYLIKADKESFQGKFQPLDQVVM 121
Query: 557 DDMFPNCIXXXXXXXXXXXXRHVTXXXXXXXXXXXXXXXXXXXXWLEKKVHQTVAALKTN 736
DDMFP+CI +HVT WL KKV+QT+AALKTN
Sbjct: 122 DDMFPDCILLLKLPELEKLLQHVTEEKEVDKKKYYKYSKEKTLKWLGKKVNQTMAALKTN 181
Query: 737 NVNVGARVQSTAFFFGDQASIDKEEDYIRYAHGLISDYIPKELSDDLSKYLXXXXXXXXX 916
VNV ARVQSTAFF G Q S DK+EDY+RYAHGLISDYIPK+LSDDLSKYL
Sbjct: 182 KVNVSARVQSTAFFSGGQVSSDKDEDYVRYAHGLISDYIPKQLSDDLSKYLKLPEPPASV 241
Query: 917 XXXXXXXXXXSDEPVEAKEDYTKFNRKDLKTVKKNSKMTASQKALAKVDKSGMKSIDSFF 1096
SDEPV AKEDYTKFN KD KTVKKNSKMTA+QKALAKVDKSGMKSIDSFF
Sbjct: 242 RNPPSKKAKLSDEPVMAKEDYTKFNSKDFKTVKKNSKMTAAQKALAKVDKSGMKSIDSFF 301
Query: 1097 G 1099
G
Sbjct: 302 G 302
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,017,871
Number of extensions: 837299
Number of successful extensions: 2637
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2634
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 264
Effective length of database: 14,240,222
Effective search space: 3759418608
Effective search space used: 3759418608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001752
(1104 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848995.1| PREDICTED: similar to CG11164-PA [Canis familia... 370 e-102
>ref|XP_848995.1| PREDICTED: similar to CG11164-PA [Canis familiaris].
Length = 279
Score = 370 bits (951), Expect = e-102
Identities = 189/268 (70%), Positives = 203/268 (75%)
Frame = +2
Query: 293 MKNGLMFVKLVNPCSGEGAIYLFNMCLPQLFEIKVFKEKHHSWFINESVQSGGLLHFATP 472
MK+GLMFVKLVNPCSGEG IYLF++CL QLFEIKVFKEKHHSWFI++SVQSGGLLHFATP
Sbjct: 1 MKSGLMFVKLVNPCSGEGTIYLFDLCLQQLFEIKVFKEKHHSWFIDQSVQSGGLLHFATP 60
Query: 473 MDPLFLLLHYLMKAGKEGKFQPIDQVVMDDMFPNCIXXXXXXXXXXXXRHVTXXXXXXXX 652
MDPLFLLLHYL KA KEGKFQP+DQVV+DD FPNCI +HVT
Sbjct: 61 MDPLFLLLHYLRKADKEGKFQPLDQVVLDDTFPNCILLLRLPDLEKLLQHVTEEKEVDKK 120
Query: 653 XXXXXXXXXXXXWLEKKVHQTVAALKTNNVNVGARVQSTAFFFGDQASIDKEEDYIRYAH 832
WL KKV QTV+ALKTNNVNV ARVQ+TAFF GD S DKEEDY+ YAH
Sbjct: 121 KYYKYSKEKTIKWLGKKVQQTVSALKTNNVNVSARVQATAFFSGDPFSSDKEEDYVCYAH 180
Query: 833 GLISDYIPKELSDDLSKYLXXXXXXXXXXXXXXXXXXXSDEPVEAKEDYTKFNRKDLKTV 1012
GLISDYIPKELSDDL+KYL SDEP+EAKEDYTKFNRKDLKT
Sbjct: 181 GLISDYIPKELSDDLAKYLKLPEPSVPLPSPPSKKVKVSDEPIEAKEDYTKFNRKDLKTE 240
Query: 1013 KKNSKMTASQKALAKVDKSGMKSIDSFF 1096
KKNSKMTA+QKALAKVDKSGMKSIDSFF
Sbjct: 241 KKNSKMTAAQKALAKVDKSGMKSIDSFF 268
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,420,706
Number of extensions: 840000
Number of successful extensions: 2695
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2693
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 264
Effective length of database: 15,407,560
Effective search space: 4067595840
Effective search space used: 4067595840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001752
(1104 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_078846.2| ribonuclease H2 subunit B isoform 1 [Homo sapie... 420 e-117
Alignment gi|NP_001135751.1| ribonuclease H2 subunit B isoform 2 [Homo sa... 336 2e-92
>ref|NP_078846.2| ribonuclease H2 subunit B isoform 1 [Homo sapiens].
Length = 312
Score = 420 bits (1080), Expect = e-117
Identities = 218/301 (72%), Positives = 231/301 (76%), Gaps = 3/301 (0%)
Frame = +2
Query: 206 AGSMDRRDGACGRQHVFLVPEYLKDASKKMKNGLMFVKLVNPCSGEGAIYLFNMCLPQLF 385
A +D DG RQHVFLV EYLKDASKKMKNGLMFVKLVNPCSGEGAIYLFNMCL QLF
Sbjct: 2 AAGVDCGDGVGARQHVFLVSEYLKDASKKMKNGLMFVKLVNPCSGEGAIYLFNMCLQQLF 61
Query: 386 EIKVFKEKHHSWFINESVQSGGLLHFATPMDPLFLLLHYLMKAGKEGKFQPIDQVVMDDM 565
E+KVFKEKHHSWFIN+SVQSGGLLHFATP+DPLFLLLHYL+KA KEGKFQP+DQVV+D++
Sbjct: 62 EVKVFKEKHHSWFINQSVQSGGLLHFATPVDPLFLLLHYLIKADKEGKFQPLDQVVVDNV 121
Query: 566 FPNCIXXXXXXXXXXXXRHVT---XXXXXXXXXXXXXXXXXXXXWLEKKVHQTVAALKTN 736
FPNCI HVT WLEKKV+QTVAALKTN
Sbjct: 122 FPNCILLLKLPGLEKLLHHVTEEKGNPEIDNKKYYKYSKEKTLKWLEKKVNQTVAALKTN 181
Query: 737 NVNVGARVQSTAFFFGDQASIDKEEDYIRYAHGLISDYIPKELSDDLSKYLXXXXXXXXX 916
NVNV +RVQSTAFF GDQAS DKEEDYIRYAHGLISDYIPKELSDDLSKYL
Sbjct: 182 NVNVSSRVQSTAFFSGDQASTDKEEDYIRYAHGLISDYIPKELSDDLSKYLKLPEPSASL 241
Query: 917 XXXXXXXXXXSDEPVEAKEDYTKFNRKDLKTVKKNSKMTASQKALAKVDKSGMKSIDSFF 1096
SDEPVEAKEDYTKFN KDLKT KKNSKMTA+QKALAKVDKSGMKSID+FF
Sbjct: 242 PNPPSKKIKLSDEPVEAKEDYTKFNTKDLKTEKKNSKMTAAQKALAKVDKSGMKSIDTFF 301
Query: 1097 G 1099
G
Sbjct: 302 G 302
>ref|NP_001135751.1| ribonuclease H2 subunit B isoform 2 [Homo sapiens].
Length = 257
Score = 336 bits (862), Expect = 2e-92
Identities = 171/231 (74%), Positives = 182/231 (78%), Gaps = 3/231 (1%)
Frame = +2
Query: 206 AGSMDRRDGACGRQHVFLVPEYLKDASKKMKNGLMFVKLVNPCSGEGAIYLFNMCLPQLF 385
A +D DG RQHVFLV EYLKDASKKMKNGLMFVKLVNPCSGEGAIYLFNMCL QLF
Sbjct: 2 AAGVDCGDGVGARQHVFLVSEYLKDASKKMKNGLMFVKLVNPCSGEGAIYLFNMCLQQLF 61
Query: 386 EIKVFKEKHHSWFINESVQSGGLLHFATPMDPLFLLLHYLMKAGKEGKFQPIDQVVMDDM 565
E+KVFKEKHHSWFIN+SVQSGGLLHFATP+DPLFLLLHYL+KA KEGKFQP+DQVV+D++
Sbjct: 62 EVKVFKEKHHSWFINQSVQSGGLLHFATPVDPLFLLLHYLIKADKEGKFQPLDQVVVDNV 121
Query: 566 FPNCIXXXXXXXXXXXXRHVT---XXXXXXXXXXXXXXXXXXXXWLEKKVHQTVAALKTN 736
FPNCI HVT WLEKKV+QTVAALKTN
Sbjct: 122 FPNCILLLKLPGLEKLLHHVTEEKGNPEIDNKKYYKYSKEKTLKWLEKKVNQTVAALKTN 181
Query: 737 NVNVGARVQSTAFFFGDQASIDKEEDYIRYAHGLISDYIPKELSDDLSKYL 889
NVNV +RVQSTAFF GDQAS DKEEDYIRYAHGLISDYIPKELSDDLSKYL
Sbjct: 182 NVNVSSRVQSTAFFSGDQASTDKEEDYIRYAHGLISDYIPKELSDDLSKYL 232
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,704,804
Number of extensions: 827940
Number of successful extensions: 2756
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2753
Number of HSP's successfully gapped: 2
Length of query: 368
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 264
Effective length of database: 14,868,908
Effective search space: 3925391712
Effective search space used: 3925391712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001752
(1104 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080277.1| ribonuclease H2 subunit B [Mus musculus]. 390 e-108
>ref|NP_080277.1| ribonuclease H2 subunit B [Mus musculus].
Length = 308
Score = 390 bits (1002), Expect = e-108
Identities = 206/300 (68%), Positives = 224/300 (74%), Gaps = 1/300 (0%)
Frame = +2
Query: 206 AGSMDRRDGACGRQHVFLVPEYLKDASKKMK-NGLMFVKLVNPCSGEGAIYLFNMCLPQL 382
AG DR D A RQ VFL+PE+LKDASKK K + L+FVKL NP SGEGA YL +MCL QL
Sbjct: 2 AGGRDRGDLAA-RQLVFLLPEHLKDASKKKKKSSLLFVKLANPHSGEGATYLIDMCLQQL 60
Query: 383 FEIKVFKEKHHSWFINESVQSGGLLHFATPMDPLFLLLHYLMKAGKEGKFQPIDQVVMDD 562
FEIKVFKEKHHSWFIN+SVQSGGLLHFATPMDPLFLLLHYL+KAGKEGK+QP+DQVV+DD
Sbjct: 61 FEIKVFKEKHHSWFINQSVQSGGLLHFATPMDPLFLLLHYLLKAGKEGKYQPLDQVVVDD 120
Query: 563 MFPNCIXXXXXXXXXXXXRHVTXXXXXXXXXXXXXXXXXXXXWLEKKVHQTVAALKTNNV 742
FP+C RHVT WLEKKV+QTV ALK NNV
Sbjct: 121 TFPDCTLLLRFPELEKSLRHVTEEKEVNSKKYYKYSSEKTLKWLEKKVNQTVVALKANNV 180
Query: 743 NVGARVQSTAFFFGDQASIDKEEDYIRYAHGLISDYIPKELSDDLSKYLXXXXXXXXXXX 922
NVGARVQS+A+F G Q S DKEEDY+RYAHGLISDYIPKELSDDLSK+L
Sbjct: 181 NVGARVQSSAYFSGGQVSRDKEEDYVRYAHGLISDYIPKELSDDLSKFLKLPEPPASLTN 240
Query: 923 XXXXXXXXSDEPVEAKEDYTKFNRKDLKTVKKNSKMTASQKALAKVDKSGMKSIDSFFGA 1102
SDEPVEAKEDYTKFN KDLKT KKNSKMTA+QKALAKVDKSGMKSID+FFGA
Sbjct: 241 PPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKSGMKSIDAFFGA 300
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,426,177
Number of extensions: 702434
Number of successful extensions: 2097
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2092
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 265
Effective length of database: 12,523,851
Effective search space: 3318820515
Effective search space used: 3318820515
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001752
(1104 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003360749.1| PREDICTED: ribonuclease H2 subunit B-like [S... 437 e-123
>ref|XP_003360749.1| PREDICTED: ribonuclease H2 subunit B-like [Sus scrofa].
Length = 425
Score = 437 bits (1125), Expect = e-123
Identities = 228/282 (80%), Positives = 229/282 (81%), Gaps = 3/282 (1%)
Frame = +2
Query: 266 EYLKDASKKMKNGLMFVKLVNPCSGEGAIYLFNMCLPQLFEIKVFKEKHHSWFINESVQS 445
EYLKDASKKMKNGLMFVKLVNPCSGEGAIYLFNMCLPQLFEIKVFKEKHHSWFINESVQS
Sbjct: 135 EYLKDASKKMKNGLMFVKLVNPCSGEGAIYLFNMCLPQLFEIKVFKEKHHSWFINESVQS 194
Query: 446 GGLLHFATPMDPLFLLLHYLMKAGKEGKFQPIDQVVMDDMFPNCIXXXXXXXXXXXXRHV 625
GGLLHFATPMDPLFLLLHYLMKAGKEGKFQPIDQVVMDDMFPNCI RHV
Sbjct: 195 GGLLHFATPMDPLFLLLHYLMKAGKEGKFQPIDQVVMDDMFPNCILLLKLPELEKLLRHV 254
Query: 626 T---XXXXXXXXXXXXXXXXXXXXWLEKKVHQTVAALKTNNVNVGARVQSTAFFFGDQAS 796
T WLEKKVHQTVAALKTNNVNVGARVQSTAFFFGDQAS
Sbjct: 255 TEXXXNPEIDKKKYYKYSKEKTLKWLEKKVHQTVAALKTNNVNVGARVQSTAFFFGDQAS 314
Query: 797 IDKEEDYIRYAHGLISDYIPKELSDDLSKYLXXXXXXXXXXXXXXXXXXXSDEPVEAKED 976
IDKEEDYIRYAHGLISDYIPK+LSDDLSKYL SDEPVEAKED
Sbjct: 315 IDKEEDYIRYAHGLISDYIPKDLSDDLSKYLKLPAPPASVPNPPSKKVKLSDEPVEAKED 374
Query: 977 YTKFNRKDLKTVKKNSKMTASQKALAKVDKSGMKSIDSFFGA 1102
YTKFNRKDLKTVKKNSKMTASQKALAKVDKSGMKSIDSFFGA
Sbjct: 375 YTKFNRKDLKTVKKNSKMTASQKALAKVDKSGMKSIDSFFGA 416
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,749,743
Number of extensions: 567928
Number of successful extensions: 1699
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1697
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 268
Effective length of database: 8,854,232
Effective search space: 2372934176
Effective search space used: 2372934176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001752
(1104 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL892680.2| Sus scrofa unplaced genomic scaffold ChrUScaf566 222 3e-55
>gb|GL892680.2| Sus scrofa unplaced genomic scaffold ChrUScaf566
Length = 213846
Score = 222 bits (112), Expect = 3e-55
Identities = 112/112 (100%)
Strand = Plus / Minus
Query: 336 caggggaaggagccatttacttgttcaatatgtgtctaccgcagctgtttgaaataaaag 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181737 caggggaaggagccatttacttgttcaatatgtgtctaccgcagctgtttgaaataaaag 181678
Query: 396 ttttcaaggaaaaacaccattcttggtttataaatgagtccgttcaatcagg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181677 ttttcaaggaaaaacaccattcttggtttataaatgagtccgttcaatcagg 181626
Score = 218 bits (110), Expect = 5e-54
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 522 agggaaagtttcagcccatagatcaagttgtgatggatgatatgtttccaaattgcatct 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174851 agggaaagtttcagcccatagatcaagttgtgatggatgatatgtttccaaattgcatct 174792
Query: 582 tgttgctgaaacttcctgaacttgagaagttacttcgacacgtgacagag 631
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174791 tgttgctgaaacttcctgaacttgagaagttacttcgacacgtgacagag 174742
Score = 212 bits (107), Expect = 3e-52
Identities = 107/107 (100%)
Strand = Plus / Minus
Query: 703 ggtccatcagactgtagcagctttgaaaaccaataacgtaaatgtcggtgcccgggtaca 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161923 ggtccatcagactgtagcagctttgaaaaccaataacgtaaatgtcggtgcccgggtaca 161864
Query: 763 gtccactgcgtttttcttcggtgaccaggcttccattgacaaggaag 809
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161863 gtccactgcgtttttcttcggtgaccaggcttccattgacaaggaag 161817
Score = 180 bits (91), Expect = 1e-42
Identities = 91/91 (100%)
Strand = Plus / Minus
Query: 1014 agaaaaatagcaaaatgactgcatctcagaaggctttggctaaagttgacaagagtggaa 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141547 agaaaaatagcaaaatgactgcatctcagaaggctttggctaaagttgacaagagtggaa 141488
Query: 1074 tgaaaagtatcgattccttttttggggcaaa 1104
|||||||||||||||||||||||||||||||
Sbjct: 141487 tgaaaagtatcgattccttttttggggcaaa 141457
Score = 165 bits (83), Expect = 6e-38
Identities = 83/83 (100%)
Strand = Plus / Minus
Query: 933 agaaagtaaagttatcagatgagcccgtagaagcaaaagaagattacactaagtttaaca 992
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144441 agaaagtaaagttatcagatgagcccgtagaagcaaaagaagattacactaagtttaaca 144382
Query: 993 ggaaagatctgaagactgtaaag 1015
|||||||||||||||||||||||
Sbjct: 144381 ggaaagatctgaagactgtaaag 144359
Score = 161 bits (81), Expect = 1e-36
Identities = 81/81 (100%)
Strand = Plus / Minus
Query: 444 caggcggtctcctccactttgccacccccatggaccctctgtttctgctcctccactacc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179060 caggcggtctcctccactttgccacccccatggaccctctgtttctgctcctccactacc 179001
Query: 504 ttatgaaggctgggaaagagg 524
|||||||||||||||||||||
Sbjct: 179000 ttatgaaggctgggaaagagg 178980
Score = 153 bits (77), Expect = 2e-34
Identities = 83/85 (97%)
Strand = Plus / Minus
Query: 808 agaggattatattcgttatgcccatggtctgatatctgattacatacctaaagaattaag 867
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 159011 agaggattatattcgttatgcccatggtctgatatctgattacatacctaaagatttaag 158952
Query: 868 tgatgacttatccaagtatttgaag 892
||| |||||||||||||||||||||
Sbjct: 158951 tgacgacttatccaagtatttgaag 158927
Score = 151 bits (76), Expect = 1e-33
Identities = 76/76 (100%)
Strand = Plus / Minus
Query: 264 cagaatatttaaaagatgcttcaaagaagatgaaaaatgggcttatgtttgtgaaattgg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183493 cagaatatttaaaagatgcttcaaagaagatgaaaaatgggcttatgtttgtgaaattgg 183434
Query: 324 ttaacccgtgttcagg 339
||||||||||||||||
Sbjct: 183433 ttaacccgtgttcagg 183418
Score = 117 bits (59), Expect = 1e-23
Identities = 59/59 (100%)
Strand = Plus / Minus
Query: 637 agaaatagacaagaagaaatattacaagtacagcaaagagaagacattaaaatggctgg 695
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163956 agaaatagacaagaagaaatattacaagtacagcaaagagaagacattaaaatggctgg 163898
Score = 85.7 bits (43), Expect = 5e-14
Identities = 43/43 (100%)
Strand = Plus / Minus
Query: 892 gcttccagcacctccagcgtcagtgccaaaccctccatcaaag 934
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155010 gcttccagcacctccagcgtcagtgccaaaccctccatcaaag 154968
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,850,824
Number of extensions: 272
Number of successful extensions: 272
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 272
Number of HSP's successfully gapped: 10
Length of query: 1104
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1083
Effective length of database: 2,808,413,156
Effective search space: 3041511447948
Effective search space used: 3041511447948
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)