Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001760
(1263 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001108328.1| tubulin alpha-1B chain [Bos taurus]. 697 0.0
Alignment gi|NP_001159977.1| tubulin alpha-1B chain [Bos taurus]. 695 0.0
Alignment gi|NP_001029376.1| tubulin alpha-1C chain [Bos taurus]. 693 0.0
Alignment gi|NP_001039875.1| tubulin alpha-1D chain [Bos taurus]. 693 0.0
Alignment gi|XP_001790595.1| PREDICTED: tubulin alpha-1C chain-like [Bos ... 690 0.0
Alignment gi|XP_001254236.1| PREDICTED: tubulin alpha-1C chain-like isofo... 690 0.0
Alignment gi|NP_001033252.1| tubulin alpha-3 chain [Bos taurus]. 689 0.0
Alignment gi|XP_002694727.1| PREDICTED: GL12416-like [Bos taurus]. 689 0.0
Alignment gi|XP_002701788.1| PREDICTED: GL12416-like [Bos taurus]. 689 0.0
Alignment gi|XP_002685663.1| PREDICTED: tubulin alpha-1C chain-like [Bos ... 688 0.0
>ref|NP_001108328.1| tubulin alpha-1B chain [Bos taurus].
Length = 451
Score = 697 bits (1798), Expect = 0.0
Identities = 345/379 (91%), Positives = 352/379 (92%), Gaps = 1/379 (0%)
Frame = +3
Query: 129 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 309 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 489 RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
RIRKLADQCTGLQGFLVFH LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 669 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
Query: 849 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR+IQFVDWCPTGFKV P
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP 360
Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
P ++QRAVCMLS
Sbjct: 361 TVVPGGDLAKVQRAVCMLS 379
>ref|NP_001159977.1| tubulin alpha-1B chain [Bos taurus].
Length = 451
Score = 695 bits (1793), Expect = 0.0
Identities = 344/379 (90%), Positives = 350/379 (92%), Gaps = 1/379 (0%)
Frame = +3
Query: 129 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 309 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 489 RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
RIRKLADQCTGLQGFLVFH LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 669 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 849 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV P
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360
Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
P ++QRAVCMLS
Sbjct: 361 TVVPGGDLAKVQRAVCMLS 379
>ref|NP_001029376.1| tubulin alpha-1C chain [Bos taurus].
Length = 449
Score = 693 bits (1789), Expect = 0.0
Identities = 342/379 (90%), Positives = 351/379 (92%), Gaps = 1/379 (0%)
Frame = +3
Query: 129 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 309 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLI+GKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 489 RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
R+RKLADQCTGLQGFLVFH LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121 RVRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 669 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRL+SQIVSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLMSQIVSSITA 240
Query: 849 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV P
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360
Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
P ++QRAVCMLS
Sbjct: 361 TVVPGGDLAKVQRAVCMLS 379
>ref|NP_001039875.1| tubulin alpha-1D chain [Bos taurus].
Length = 452
Score = 693 bits (1789), Expect = 0.0
Identities = 341/379 (89%), Positives = 350/379 (92%), Gaps = 1/379 (0%)
Frame = +3
Query: 129 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
MRECIS+HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 309 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKE+IDLVLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 120
Query: 489 RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
RIRKLADQCTGLQGFL+FH LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121 RIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 669 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 849 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV P
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360
Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
P ++QRAVCMLS
Sbjct: 361 TVVPGGDLAKVQRAVCMLS 379
>ref|XP_001790595.1| PREDICTED: tubulin alpha-1C chain-like [Bos taurus].
Length = 449
Score = 690 bits (1780), Expect = 0.0
Identities = 340/379 (89%), Positives = 350/379 (92%), Gaps = 1/379 (0%)
Frame = +3
Query: 129 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 309 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLI+GKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 489 RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
R+RKLADQCTGLQGFLVFH LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121 RVRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 669 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTY NLNRL+SQIVSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYMNLNRLMSQIVSSITA 240
Query: 849 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV P
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360
Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
P +++RAVCMLS
Sbjct: 361 TVVPGGDLAKVERAVCMLS 379
>ref|XP_001254236.1| PREDICTED: tubulin alpha-1C chain-like isoform 1 [Bos taurus].
Length = 449
Score = 690 bits (1780), Expect = 0.0
Identities = 340/379 (89%), Positives = 350/379 (92%), Gaps = 1/379 (0%)
Frame = +3
Query: 129 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 309 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLI+GKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 489 RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
R+RKLADQCTGLQGFLVFH LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121 RVRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 669 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTY NLNRL+SQIVSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYMNLNRLMSQIVSSITA 240
Query: 849 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV P
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360
Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
P +++RAVCMLS
Sbjct: 361 TVVPGGDLAKVERAVCMLS 379
>ref|NP_001033252.1| tubulin alpha-3 chain [Bos taurus].
Length = 450
Score = 689 bits (1778), Expect = 0.0
Identities = 338/379 (89%), Positives = 349/379 (92%), Gaps = 1/379 (0%)
Frame = +3
Query: 129 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 309 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLD
Sbjct: 61 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 120
Query: 489 RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
RIRKLAD CTGLQGFL+FH LLMERLSVDYGKKSKLEF+IYPAPQVSTA
Sbjct: 121 RIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTA 180
Query: 669 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 849 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
QMVKCDPRHGKYMACC+LYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV P
Sbjct: 301 QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360
Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
P ++QRAVCMLS
Sbjct: 361 TVVPGGDLAKVQRAVCMLS 379
>ref|XP_002694727.1| PREDICTED: GL12416-like [Bos taurus].
Length = 450
Score = 689 bits (1778), Expect = 0.0
Identities = 338/379 (89%), Positives = 349/379 (92%), Gaps = 1/379 (0%)
Frame = +3
Query: 129 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 309 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLD
Sbjct: 61 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 120
Query: 489 RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
RIRKLAD CTGLQGFL+FH LLMERLSVDYGKKSKLEF+IYPAPQVSTA
Sbjct: 121 RIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTA 180
Query: 669 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 849 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
QMVKCDPRHGKYMACC+LYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV P
Sbjct: 301 QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360
Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
P ++QRAVCMLS
Sbjct: 361 TVVPGGDLAKVQRAVCMLS 379
>ref|XP_002701788.1| PREDICTED: GL12416-like [Bos taurus].
Length = 450
Score = 689 bits (1778), Expect = 0.0
Identities = 338/379 (89%), Positives = 349/379 (92%), Gaps = 1/379 (0%)
Frame = +3
Query: 129 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 309 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLD
Sbjct: 61 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 120
Query: 489 RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
RIRKLAD CTGLQGFL+FH LLMERLSVDYGKKSKLEF+IYPAPQVSTA
Sbjct: 121 RIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTA 180
Query: 669 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 849 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
QMVKCDPRHGKYMACC+LYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV P
Sbjct: 301 QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360
Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
P ++QRAVCMLS
Sbjct: 361 TVVPGGDLAKVQRAVCMLS 379
>ref|XP_002685663.1| PREDICTED: tubulin alpha-1C chain-like [Bos taurus].
Length = 449
Score = 688 bits (1775), Expect = 0.0
Identities = 339/379 (89%), Positives = 350/379 (92%), Gaps = 1/379 (0%)
Frame = +3
Query: 129 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 309 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLI+GKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 489 RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
R+RKLADQCTGLQGFLVFH LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121 RVRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 669 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNL+IERPTYTNLNRL+SQIVSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLNIERPTYTNLNRLMSQIVSSITA 240
Query: 849 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
SLRFDGALNVDLTEFQTNLVPYPR HFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRTHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++T+R IQFVDWCPTGFKV P
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTERTIQFVDWCPTGFKVGINYQPP 360
Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
P ++QRAVCMLS
Sbjct: 361 TVVPGGDLAKVQRAVCMLS 379
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 53,705,476
Number of extensions: 1644796
Number of successful extensions: 5859
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 5779
Number of HSP's successfully gapped: 42
Length of query: 421
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 316
Effective length of database: 14,207,134
Effective search space: 4489454344
Effective search space used: 4489454344
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001760
(1263 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_862226.1| PREDICTED: similar to tubulin, alpha 2 isoform ... 698 0.0
Alignment gi|XP_850665.1| PREDICTED: similar to Tubulin alpha-2 chain (Al... 698 0.0
Alignment gi|XP_851095.1| PREDICTED: similar to Tubulin alpha-2 chain (Al... 696 0.0
Alignment gi|XP_862547.1| PREDICTED: similar to tubulin, alpha 1 isoform ... 695 0.0
Alignment gi|XP_862523.1| PREDICTED: similar to tubulin, alpha 1 isoform ... 695 0.0
Alignment gi|XP_862497.1| PREDICTED: similar to tubulin, alpha 2 isoform ... 695 0.0
Alignment gi|XP_534814.1| PREDICTED: similar to tubulin, alpha 1 isoform ... 695 0.0
Alignment gi|XP_853268.1| PREDICTED: similar to Tubulin alpha-2 chain (Al... 693 0.0
Alignment gi|XP_860145.1| PREDICTED: similar to tubulin, alpha 2 isoform ... 689 0.0
Alignment gi|XP_849904.1| PREDICTED: similar to Tubulin alpha-3 chain (Al... 689 0.0
>ref|XP_862226.1| PREDICTED: similar to tubulin, alpha 2 isoform 2 isoform 11 [Canis
familiaris].
Length = 417
Score = 698 bits (1802), Expect = 0.0
Identities = 346/379 (91%), Positives = 352/379 (92%), Gaps = 1/379 (0%)
Frame = +3
Query: 129 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 309 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 489 RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
RIRKLADQCTGLQGFLVFH LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 669 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
Query: 849 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 300
Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR+IQFVDWCPTGFKV P
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP 360
Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
P ++QRAVCMLS
Sbjct: 361 TVVPGGDLAKVQRAVCMLS 379
>ref|XP_850665.1| PREDICTED: similar to Tubulin alpha-2 chain (Alpha-tubulin 2) isoform
2 [Canis familiaris].
Length = 449
Score = 698 bits (1802), Expect = 0.0
Identities = 346/379 (91%), Positives = 352/379 (92%), Gaps = 1/379 (0%)
Frame = +3
Query: 129 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 309 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 489 RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
RIRKLADQCTGLQGFLVFH LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 669 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
Query: 849 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 300
Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR+IQFVDWCPTGFKV P
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP 360
Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
P ++QRAVCMLS
Sbjct: 361 TVVPGGDLAKVQRAVCMLS 379
>ref|XP_851095.1| PREDICTED: similar to Tubulin alpha-2 chain (Alpha-tubulin 2) [Canis
familiaris].
Length = 518
Score = 696 bits (1795), Expect = 0.0
Identities = 349/408 (85%), Positives = 357/408 (87%), Gaps = 17/408 (4%)
Frame = +3
Query: 90 STPVACAC*P----------------VTTMRECISIHVGQAGVQIGNACWELYCLEHGIQ 221
+ P CAC P RECISIHVGQAGVQIGNACWELYCLEHGIQ
Sbjct: 39 TAPAVCACAPGRCGPAAFKTDFYFYLFFPQRECISIHVGQAGVQIGNACWELYCLEHGIQ 98
Query: 222 PDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQ 401
PDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQ
Sbjct: 99 PDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQ 158
Query: 402 LITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHXXXXXXXXXXXX 581
LITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFH
Sbjct: 159 LITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTS 218
Query: 582 LLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD 761
LLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD
Sbjct: 219 LLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD 278
Query: 762 ICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLAT 941
ICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLAT
Sbjct: 279 ICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLAT 338
Query: 942 YAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDLVPKDVNAA 1121
YAPVISAEKAYHEQL+VAEITNACFEPANQMVKCDPRHGKYMACCLLYRGD+VPKDVNAA
Sbjct: 339 YAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAA 398
Query: 1122 IAPLQTKRNIQFVDWCPTGFKVAF-ITDPHCGPW*RPWQIQRAVCMLS 1262
IA ++TKR+IQFVDWCPTGFKV P P ++QRAVCMLS
Sbjct: 399 IATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 446
>ref|XP_862547.1| PREDICTED: similar to tubulin, alpha 1 isoform 13 [Canis familiaris].
Length = 451
Score = 695 bits (1793), Expect = 0.0
Identities = 344/379 (90%), Positives = 350/379 (92%), Gaps = 1/379 (0%)
Frame = +3
Query: 129 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 309 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 489 RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
RIRKLADQCTGLQGFLVFH LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 669 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 849 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV P
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360
Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
P ++QRAVCMLS
Sbjct: 361 TVVPGGDLAKVQRAVCMLS 379
>ref|XP_862523.1| PREDICTED: similar to tubulin, alpha 1 isoform 12 [Canis familiaris].
Length = 451
Score = 695 bits (1793), Expect = 0.0
Identities = 344/379 (90%), Positives = 350/379 (92%), Gaps = 1/379 (0%)
Frame = +3
Query: 129 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 309 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 489 RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
RIRKLADQCTGLQGFLVFH LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 669 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 849 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV P
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360
Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
P ++QRAVCMLS
Sbjct: 361 TVVPGGDLAKVQRAVCMLS 379
>ref|XP_862497.1| PREDICTED: similar to tubulin, alpha 2 isoform 2 isoform 11 [Canis
familiaris].
Length = 419
Score = 695 bits (1793), Expect = 0.0
Identities = 344/379 (90%), Positives = 350/379 (92%), Gaps = 1/379 (0%)
Frame = +3
Query: 129 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 309 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 489 RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
RIRKLADQCTGLQGFLVFH LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 669 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 849 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV P
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360
Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
P ++QRAVCMLS
Sbjct: 361 TVVPGGDLAKVQRAVCMLS 379
>ref|XP_534814.1| PREDICTED: similar to tubulin, alpha 1 isoform 1 [Canis familiaris].
Length = 451
Score = 695 bits (1793), Expect = 0.0
Identities = 344/379 (90%), Positives = 350/379 (92%), Gaps = 1/379 (0%)
Frame = +3
Query: 129 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 309 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 489 RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
RIRKLADQCTGLQGFLVFH LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 669 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 849 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV P
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360
Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
P ++QRAVCMLS
Sbjct: 361 TVVPGGDLAKVQRAVCMLS 379
>ref|XP_853268.1| PREDICTED: similar to Tubulin alpha-2 chain (Alpha-tubulin 2) [Canis
familiaris].
Length = 460
Score = 693 bits (1789), Expect = 0.0
Identities = 341/378 (90%), Positives = 351/378 (92%), Gaps = 1/378 (0%)
Frame = +3
Query: 132 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 311
RECIS+HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH
Sbjct: 11 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 70
Query: 312 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDR 491
VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKE+IDLVLDR
Sbjct: 71 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLDR 130
Query: 492 IRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTAV 671
IRKLADQCTGLQGFL+FH LLMERLSVDYGKKSKLEFSIYPAPQVSTAV
Sbjct: 131 IRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAV 190
Query: 672 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITAS 851
VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITAS
Sbjct: 191 VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITAS 250
Query: 852 LRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQ 1031
LRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPANQ
Sbjct: 251 LRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQ 310
Query: 1032 MVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDPH 1208
MVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR+IQFVDWCPTGFKV P
Sbjct: 311 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPT 370
Query: 1209 CGPW*RPWQIQRAVCMLS 1262
P ++QRAVCMLS
Sbjct: 371 VVPGGDLAKVQRAVCMLS 388
>ref|XP_860145.1| PREDICTED: similar to tubulin, alpha 2 isoform 2 isoform 2 [Canis
familiaris].
Length = 418
Score = 689 bits (1778), Expect = 0.0
Identities = 338/379 (89%), Positives = 349/379 (92%), Gaps = 1/379 (0%)
Frame = +3
Query: 129 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 309 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLD
Sbjct: 61 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 120
Query: 489 RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
RIRKLAD CTGLQGFL+FH LLMERLSVDYGKKSKLEF+IYPAPQVSTA
Sbjct: 121 RIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTA 180
Query: 669 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 849 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
QMVKCDPRHGKYMACC+LYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV P
Sbjct: 301 QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360
Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
P ++QRAVCMLS
Sbjct: 361 TVVPGGDLAKVQRAVCMLS 379
>ref|XP_849904.1| PREDICTED: similar to Tubulin alpha-3 chain (Alpha-tubulin 3) isoform
1 [Canis familiaris].
Length = 450
Score = 689 bits (1778), Expect = 0.0
Identities = 338/379 (89%), Positives = 349/379 (92%), Gaps = 1/379 (0%)
Frame = +3
Query: 129 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 309 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLD
Sbjct: 61 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 120
Query: 489 RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
RIRKLAD CTGLQGFL+FH LLMERLSVDYGKKSKLEF+IYPAPQVSTA
Sbjct: 121 RIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTA 180
Query: 669 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 849 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
QMVKCDPRHGKYMACC+LYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV P
Sbjct: 301 QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360
Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
P ++QRAVCMLS
Sbjct: 361 TVVPGGDLAKVQRAVCMLS 379
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 56,075,592
Number of extensions: 1700050
Number of successful extensions: 6592
Number of sequences better than 1.0e-05: 104
Number of HSP's gapped: 6420
Number of HSP's successfully gapped: 123
Length of query: 421
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 316
Effective length of database: 15,374,224
Effective search space: 4858254784
Effective search space used: 4858254784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001760
(1263 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_116093.1| tubulin alpha-1C chain [Homo sapiens]. 698 0.0
Alignment gi|NP_006073.2| tubulin alpha-1B chain [Homo sapiens]. 697 0.0
Alignment gi|NP_006000.2| tubulin alpha-1A chain [Homo sapiens]. 695 0.0
Alignment gi|NP_525125.2| tubulin alpha-3C/D chain [Homo sapiens]. 689 0.0
Alignment gi|NP_005992.1| tubulin alpha-3C/D chain [Homo sapiens]. 689 0.0
Alignment gi|NP_997195.1| tubulin alpha-3E chain [Homo sapiens]. 685 0.0
Alignment gi|NP_005991.1| tubulin alpha-4A chain [Homo sapiens]. 682 0.0
Alignment gi|NP_061816.1| tubulin alpha-8 chain isoform 1 [Homo sapiens]. 633 0.0
Alignment gi|NP_079079.1| tubulin alpha chain-like 3 isoform 1 [Homo sapi... 534 e-152
Alignment gi|NP_001180343.1| tubulin alpha-8 chain isoform 2 [Homo sapien... 528 e-150
>ref|NP_116093.1| tubulin alpha-1C chain [Homo sapiens].
Length = 449
Score = 698 bits (1801), Expect = 0.0
Identities = 346/379 (91%), Positives = 351/379 (92%), Gaps = 1/379 (0%)
Frame = +3
Query: 129 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 309 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 489 RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
RIRKLADQCTGLQGFLVFH LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 669 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
Query: 849 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 300
Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV P
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360
Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
P ++QRAVCMLS
Sbjct: 361 TVVPGGDLAKVQRAVCMLS 379
>ref|NP_006073.2| tubulin alpha-1B chain [Homo sapiens].
Length = 451
Score = 697 bits (1798), Expect = 0.0
Identities = 345/379 (91%), Positives = 352/379 (92%), Gaps = 1/379 (0%)
Frame = +3
Query: 129 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 309 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 489 RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
RIRKLADQCTGLQGFLVFH LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 669 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
Query: 849 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR+IQFVDWCPTGFKV P
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP 360
Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
P ++QRAVCMLS
Sbjct: 361 TVVPGGDLAKVQRAVCMLS 379
>ref|NP_006000.2| tubulin alpha-1A chain [Homo sapiens].
Length = 451
Score = 695 bits (1793), Expect = 0.0
Identities = 344/379 (90%), Positives = 350/379 (92%), Gaps = 1/379 (0%)
Frame = +3
Query: 129 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 309 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 489 RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
RIRKLADQCTGLQGFLVFH LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 669 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 849 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV P
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360
Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
P ++QRAVCMLS
Sbjct: 361 TVVPGGDLAKVQRAVCMLS 379
>ref|NP_525125.2| tubulin alpha-3C/D chain [Homo sapiens].
Length = 450
Score = 689 bits (1778), Expect = 0.0
Identities = 338/379 (89%), Positives = 349/379 (92%), Gaps = 1/379 (0%)
Frame = +3
Query: 129 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 309 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLD
Sbjct: 61 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 120
Query: 489 RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
RIRKLAD CTGLQGFL+FH LLMERLSVDYGKKSKLEF+IYPAPQVSTA
Sbjct: 121 RIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTA 180
Query: 669 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 849 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
QMVKCDPRHGKYMACC+LYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV P
Sbjct: 301 QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360
Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
P ++QRAVCMLS
Sbjct: 361 TVVPGGDLAKVQRAVCMLS 379
>ref|NP_005992.1| tubulin alpha-3C/D chain [Homo sapiens].
Length = 450
Score = 689 bits (1778), Expect = 0.0
Identities = 338/379 (89%), Positives = 349/379 (92%), Gaps = 1/379 (0%)
Frame = +3
Query: 129 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 309 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLD
Sbjct: 61 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 120
Query: 489 RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
RIRKLAD CTGLQGFL+FH LLMERLSVDYGKKSKLEF+IYPAPQVSTA
Sbjct: 121 RIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTA 180
Query: 669 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 849 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
QMVKCDPRHGKYMACC+LYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV P
Sbjct: 301 QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360
Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
P ++QRAVCMLS
Sbjct: 361 TVVPGGDLAKVQRAVCMLS 379
>ref|NP_997195.1| tubulin alpha-3E chain [Homo sapiens].
Length = 450
Score = 685 bits (1767), Expect = 0.0
Identities = 336/379 (88%), Positives = 348/379 (91%), Gaps = 1/379 (0%)
Frame = +3
Query: 129 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 309 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAA+NYARGHYTIGKEI+DLVLD
Sbjct: 61 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAASNYARGHYTIGKEIVDLVLD 120
Query: 489 RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
RIRKLAD CTGLQGFL+FH LLMERLSVDY KKSKLEF+IYPAPQVSTA
Sbjct: 121 RIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYSKKSKLEFAIYPAPQVSTA 180
Query: 669 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 849 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
QMVKCDPRHGKYMACC+LYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV P
Sbjct: 301 QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360
Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
P ++QRAVCMLS
Sbjct: 361 TVVPGGDLAKVQRAVCMLS 379
>ref|NP_005991.1| tubulin alpha-4A chain [Homo sapiens].
Length = 448
Score = 682 bits (1761), Expect = 0.0
Identities = 336/379 (88%), Positives = 347/379 (91%), Gaps = 1/379 (0%)
Frame = +3
Query: 129 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
MRECIS+HVGQAGVQ+GNACWELYCLEHGIQPDGQMPSDKTIGGGDDSF TFF ETGAGK
Sbjct: 1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGK 60
Query: 309 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
HVPRAVFVDLEPTVIDE+R G YRQLFHPEQLITGKEDAANNYARGHYTIGKEIID VLD
Sbjct: 61 HVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLD 120
Query: 489 RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
RIRKL+DQCTGLQGFLVFH LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121 RIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 669 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
Query: 849 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR+IQFVDWCPTGFKV P
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPP 360
Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
P ++QRAVCMLS
Sbjct: 361 TVVPGGDLAKVQRAVCMLS 379
>ref|NP_061816.1| tubulin alpha-8 chain isoform 1 [Homo sapiens].
Length = 449
Score = 633 bits (1633), Expect = 0.0
Identities = 309/379 (81%), Positives = 331/379 (87%), Gaps = 1/379 (0%)
Frame = +3
Query: 129 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
MRECIS+HVGQAGVQIGNACWEL+CLEHGIQ DG + + DDSF TFFSETG GK
Sbjct: 1 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFDAQASKINDDDSFTTFFSETGNGK 60
Query: 309 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
HVPRAV +DLEPTV+DEVR GTYRQLFHPEQLITGKEDAANNYARGHYT+GKE IDLVLD
Sbjct: 61 HVPRAVMIDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLD 120
Query: 489 RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
RIRKL D C+GLQGFL+FH LLMERLS+DYGKKSKLEF+IYPAPQVSTA
Sbjct: 121 RIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTA 180
Query: 669 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
Query: 849 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQL+VAEIT++CFEP +
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNS 300
Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
QMVKCDPRHGKYMACC+LYRGD+VPKDVN AIA ++TKR IQFVDWCPTGFKV P
Sbjct: 301 QMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPP 360
Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
P ++QRAVCMLS
Sbjct: 361 TVVPGGDLAKVQRAVCMLS 379
>ref|NP_079079.1| tubulin alpha chain-like 3 isoform 1 [Homo sapiens].
Length = 446
Score = 534 bits (1375), Expect = e-152
Identities = 253/387 (65%), Positives = 314/387 (81%), Gaps = 9/387 (2%)
Frame = +3
Query: 129 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDG--------QMPSDKTIGGGDDSFNTF 284
MREC+SIH+GQAG+QIG+ACWELYCLEHGIQP+G Q+ + K + + SF+TF
Sbjct: 1 MRECLSIHIGQAGIQIGDACWELYCLEHGIQPNGVVLDTQQDQLENAK-MEHTNASFDTF 59
Query: 285 FSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGK 464
F ET AGKHVPRA+FVDLEPTVID +RTG +R LFHPEQL++GKEDAANNYARG Y++G
Sbjct: 60 FCETRAGKHVPRALFVDLEPTVIDGIRTGQHRSLFHPEQLLSGKEDAANNYARGRYSVGS 119
Query: 465 EIIDLVLDRIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIY 644
E+IDLVL+R RKLA+QC GLQGFL+F LLMERL+ +Y +K+KLEFS+Y
Sbjct: 120 EVIDLVLERTRKLAEQCGGLQGFLIFRSFGGGTGSGFTSLLMERLTGEYSRKTKLEFSVY 179
Query: 645 PAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIS 824
PAP++STAVVEPYNS+LTTH+T EH+DC FMVDNEA+YDIC R L +E P++ ++NRL+
Sbjct: 180 PAPRISTAVVEPYNSVLTTHSTTEHTDCTFMVDNEAVYDICHRKLGVECPSHASINRLVV 239
Query: 825 QIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEIT 1004
Q+VSSITASLRF+G LNVDL EFQTNLVPYPRIHFP+ +AP++SA+KAYHEQ +V++IT
Sbjct: 240 QVVSSITASLRFEGPLNVDLIEFQTNLVPYPRIHFPMTAFAPIVSADKAYHEQFSVSDIT 299
Query: 1005 NACFEPANQMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFK 1184
ACFE +NQ+VKCDPR GKYMACCLLYRGD+VPK+VNAAIA +++ ++QFVDWCPTGFK
Sbjct: 300 TACFESSNQLVKCDPRLGKYMACCLLYRGDVVPKEVNAAIAATKSRHSVQFVDWCPTGFK 359
Query: 1185 VAFIT-DPHCGPW*RPWQIQRAVCMLS 1262
V P P ++ R++CMLS
Sbjct: 360 VGINNRPPTVMPGGDLAKVHRSICMLS 386
>ref|NP_001180343.1| tubulin alpha-8 chain isoform 2 [Homo sapiens].
Length = 383
Score = 528 bits (1361), Expect = e-150
Identities = 259/312 (83%), Positives = 277/312 (88%), Gaps = 1/312 (0%)
Frame = +3
Query: 330 VDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLAD 509
+DLEPTV+DEVR GTYRQLFHPEQLITGKEDAANNYARGHYT+GKE IDLVLDRIRKL D
Sbjct: 2 IDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRIRKLTD 61
Query: 510 QCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNS 689
C+GLQGFL+FH LLMERLS+DYGKKSKLEF+IYPAPQVSTAVVEPYNS
Sbjct: 62 ACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTAVVEPYNS 121
Query: 690 ILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGA 869
ILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGA
Sbjct: 122 ILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGA 181
Query: 870 LNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDP 1049
LNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQL+VAEIT++CFEP +QMVKCDP
Sbjct: 182 LNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQMVKCDP 241
Query: 1050 RHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDPHCGPW*R 1226
RHGKYMACC+LYRGD+VPKDVN AIA ++TKR IQFVDWCPTGFKV P P
Sbjct: 242 RHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGD 301
Query: 1227 PWQIQRAVCMLS 1262
++QRAVCMLS
Sbjct: 302 LAKVQRAVCMLS 313
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 55,076,163
Number of extensions: 1667923
Number of successful extensions: 5808
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 5746
Number of HSP's successfully gapped: 30
Length of query: 421
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 316
Effective length of database: 14,835,944
Effective search space: 4688158304
Effective search space used: 4688158304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001760
(1263 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033474.1| tubulin alpha-1C chain [Mus musculus]. 698 0.0
Alignment gi|NP_035784.1| tubulin alpha-1B chain [Mus musculus]. 697 0.0
Alignment gi|NP_035783.1| tubulin alpha-1A chain [Mus musculus]. 695 0.0
Alignment gi|NP_033475.1| tubulin alpha-3 chain [Mus musculus]. 689 0.0
Alignment gi|NP_033472.1| tubulin alpha-3 chain [Mus musculus]. 689 0.0
Alignment gi|NP_033473.1| tubulin alpha-4A chain [Mus musculus]. 682 0.0
Alignment gi|XP_486246.1| PREDICTED: tubulin alpha-1B chain isoform 1 [Mu... 672 0.0
Alignment gi|XP_909750.1| PREDICTED: tubulin alpha-1B chain isoform 4 [Mu... 672 0.0
Alignment gi|NP_059075.1| tubulin alpha-8 chain [Mus musculus]. 633 0.0
Alignment gi|NP_001029051.2| tubulin alpha chain-like 3 [Mus musculus]. 531 e-151
>ref|NP_033474.1| tubulin alpha-1C chain [Mus musculus].
Length = 449
Score = 698 bits (1801), Expect = 0.0
Identities = 346/379 (91%), Positives = 351/379 (92%), Gaps = 1/379 (0%)
Frame = +3
Query: 129 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 309 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 489 RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
RIRKLADQCTGLQGFLVFH LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 669 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
Query: 849 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 300
Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV P
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360
Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
P ++QRAVCMLS
Sbjct: 361 TVVPGGDLAKVQRAVCMLS 379
>ref|NP_035784.1| tubulin alpha-1B chain [Mus musculus].
Length = 451
Score = 697 bits (1798), Expect = 0.0
Identities = 345/379 (91%), Positives = 352/379 (92%), Gaps = 1/379 (0%)
Frame = +3
Query: 129 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 309 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 489 RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
RIRKLADQCTGLQGFLVFH LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 669 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
Query: 849 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR+IQFVDWCPTGFKV P
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP 360
Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
P ++QRAVCMLS
Sbjct: 361 TVVPGGDLAKVQRAVCMLS 379
>ref|NP_035783.1| tubulin alpha-1A chain [Mus musculus].
Length = 451
Score = 695 bits (1793), Expect = 0.0
Identities = 344/379 (90%), Positives = 350/379 (92%), Gaps = 1/379 (0%)
Frame = +3
Query: 129 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 309 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 489 RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
RIRKLADQCTGLQGFLVFH LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 669 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 849 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV P
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360
Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
P ++QRAVCMLS
Sbjct: 361 TVVPGGDLAKVQRAVCMLS 379
>ref|NP_033475.1| tubulin alpha-3 chain [Mus musculus].
Length = 450
Score = 689 bits (1778), Expect = 0.0
Identities = 338/379 (89%), Positives = 349/379 (92%), Gaps = 1/379 (0%)
Frame = +3
Query: 129 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 309 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLD
Sbjct: 61 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 120
Query: 489 RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
RIRKLAD CTGLQGFL+FH LLMERLSVDYGKKSKLEF+IYPAPQVSTA
Sbjct: 121 RIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTA 180
Query: 669 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 849 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
QMVKCDPRHGKYMACC+LYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV P
Sbjct: 301 QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360
Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
P ++QRAVCMLS
Sbjct: 361 TVVPGGDLAKVQRAVCMLS 379
>ref|NP_033472.1| tubulin alpha-3 chain [Mus musculus].
Length = 450
Score = 689 bits (1778), Expect = 0.0
Identities = 338/379 (89%), Positives = 349/379 (92%), Gaps = 1/379 (0%)
Frame = +3
Query: 129 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 309 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLD
Sbjct: 61 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 120
Query: 489 RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
RIRKLAD CTGLQGFL+FH LLMERLSVDYGKKSKLEF+IYPAPQVSTA
Sbjct: 121 RIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTA 180
Query: 669 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 849 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
QMVKCDPRHGKYMACC+LYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV P
Sbjct: 301 QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360
Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
P ++QRAVCMLS
Sbjct: 361 TVVPGGDLAKVQRAVCMLS 379
>ref|NP_033473.1| tubulin alpha-4A chain [Mus musculus].
Length = 448
Score = 682 bits (1761), Expect = 0.0
Identities = 336/379 (88%), Positives = 347/379 (91%), Gaps = 1/379 (0%)
Frame = +3
Query: 129 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
MRECIS+HVGQAGVQ+GNACWELYCLEHGIQPDGQMPSDKTIGGGDDSF TFF ETGAGK
Sbjct: 1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGK 60
Query: 309 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
HVPRAVFVDLEPTVIDE+R G YRQLFHPEQLITGKEDAANNYARGHYTIGKEIID VLD
Sbjct: 61 HVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLD 120
Query: 489 RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
RIRKL+DQCTGLQGFLVFH LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121 RIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 669 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
Query: 849 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR+IQFVDWCPTGFKV P
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPP 360
Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
P ++QRAVCMLS
Sbjct: 361 TVVPGGDLAKVQRAVCMLS 379
>ref|XP_486246.1| PREDICTED: tubulin alpha-1B chain isoform 1 [Mus musculus].
Length = 450
Score = 672 bits (1734), Expect = 0.0
Identities = 336/379 (88%), Positives = 344/379 (90%), Gaps = 1/379 (0%)
Frame = +3
Query: 129 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
MRECISIHVGQAGVQIGNACWELYCLEHGIQ DGQMPS KTI GGDDSFNTF SETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQADGQMPSGKTIRGGDDSFNTF-SETGAGK 59
Query: 309 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 60 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 119
Query: 489 RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
IRKLADQC GLQGFLVFH LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 120 TIRKLADQCIGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 179
Query: 669 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIE PTYTNLNRLISQIVSSITA
Sbjct: 180 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIEHPTYTNLNRLISQIVSSITA 239
Query: 849 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHE L+VAEITNACFEPAN
Sbjct: 240 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEHLSVAEITNACFEPAN 299
Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
QMVKCDPRHGKYMACCLLYRGD++PKDVNAAIA ++TKR+IQFVDWCPTGFKV P
Sbjct: 300 QMVKCDPRHGKYMACCLLYRGDVIPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP 359
Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
P ++QRAVCMLS
Sbjct: 360 TVVPGGDLAKVQRAVCMLS 378
>ref|XP_909750.1| PREDICTED: tubulin alpha-1B chain isoform 4 [Mus musculus].
Length = 450
Score = 672 bits (1734), Expect = 0.0
Identities = 336/379 (88%), Positives = 344/379 (90%), Gaps = 1/379 (0%)
Frame = +3
Query: 129 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
MRECISIHVGQAGVQIGNACWELYCLEHGIQ DGQMPS KTI GGDDSFNTF SETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQADGQMPSGKTIRGGDDSFNTF-SETGAGK 59
Query: 309 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 60 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 119
Query: 489 RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
IRKLADQC GLQGFLVFH LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 120 TIRKLADQCIGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 179
Query: 669 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIE PTYTNLNRLISQIVSSITA
Sbjct: 180 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIEHPTYTNLNRLISQIVSSITA 239
Query: 849 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHE L+VAEITNACFEPAN
Sbjct: 240 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEHLSVAEITNACFEPAN 299
Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
QMVKCDPRHGKYMACCLLYRGD++PKDVNAAIA ++TKR+IQFVDWCPTGFKV P
Sbjct: 300 QMVKCDPRHGKYMACCLLYRGDVIPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP 359
Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
P ++QRAVCMLS
Sbjct: 360 TVVPGGDLAKVQRAVCMLS 378
>ref|NP_059075.1| tubulin alpha-8 chain [Mus musculus].
Length = 449
Score = 633 bits (1633), Expect = 0.0
Identities = 310/379 (81%), Positives = 331/379 (87%), Gaps = 1/379 (0%)
Frame = +3
Query: 129 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
MRECIS+HVGQAGVQIGNACWEL+CLEHGIQ DG + + DDSF TFFSETG GK
Sbjct: 1 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGTQASKINDDDSFTTFFSETGNGK 60
Query: 309 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
HVPRAV VDLEPTV+DEVR GTYRQLFHPEQLITGKEDAANNYARGHYT+GKE IDLVLD
Sbjct: 61 HVPRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLD 120
Query: 489 RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
RIRKL D C+GLQGFL+FH LLMERLS+DYGKKSKLEF+IYPAPQVSTA
Sbjct: 121 RIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTA 180
Query: 669 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
Query: 849 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQL+VAEIT++CFEP +
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNS 300
Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
QMVKCDPRHGKYMACC+LYRGD+VPKDVN AIA ++TKR IQFVDWCPTGFKV P
Sbjct: 301 QMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPP 360
Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
P ++QRAVCMLS
Sbjct: 361 TVVPGGDLAKVQRAVCMLS 379
>ref|NP_001029051.2| tubulin alpha chain-like 3 [Mus musculus].
Length = 446
Score = 531 bits (1369), Expect = e-151
Identities = 255/386 (66%), Positives = 311/386 (80%), Gaps = 8/386 (2%)
Frame = +3
Query: 129 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDK-------TIGGGDDSFNTFF 287
MREC+SIH+GQAGVQIG+ACWELYCLEHGIQPDG + + + + S +TFF
Sbjct: 1 MRECLSIHIGQAGVQIGDACWELYCLEHGIQPDGFILDHQHDNLENPKVEHMNASLDTFF 60
Query: 288 SETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKE 467
ET AGKHVPR +F+DLEPTVID +R G Y LFHPEQL+ GKEDAAN YARG Y++G E
Sbjct: 61 HETRAGKHVPRTLFMDLEPTVIDGIRVGRYHSLFHPEQLVNGKEDAANTYARGRYSVGSE 120
Query: 468 IIDLVLDRIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYP 647
+I+LVL+RIRKLA+QC+GLQGFL++ LLMERLSV+Y KK KLEFS+YP
Sbjct: 121 VIELVLERIRKLAEQCSGLQGFLIYRSFGGGTGSGFTSLLMERLSVEYCKKIKLEFSVYP 180
Query: 648 APQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQ 827
+P++STAVVEPYN+ILTTH+T+E+SDCAFMVDNEA+YDIC+ L IERP+Y ++NRLI+Q
Sbjct: 181 SPRISTAVVEPYNAILTTHSTIEYSDCAFMVDNEALYDICQHKLGIERPSYASINRLIAQ 240
Query: 828 IVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITN 1007
+ SSITASLRF+G LNVDL EFQTNLVPYPRIHFP+ AP+ISAEKAY EQL+V+++T
Sbjct: 241 VSSSITASLRFEGPLNVDLIEFQTNLVPYPRIHFPITALAPIISAEKAYQEQLSVSDVTA 300
Query: 1008 ACFEPANQMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKV 1187
+CFE +NQ+VKCDPR GKYMACCLLYRGD+VPKDVN AIA ++++ ++QFVDWCPTGFKV
Sbjct: 301 SCFEVSNQLVKCDPRLGKYMACCLLYRGDVVPKDVNEAIAAMKSRTSVQFVDWCPTGFKV 360
Query: 1188 AF-ITDPHCGPW*RPWQIQRAVCMLS 1262
P P ++QRAVCMLS
Sbjct: 361 GINYQPPAVVPGGDLARVQRAVCMLS 386
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,543,821
Number of extensions: 1394103
Number of successful extensions: 4949
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 4884
Number of HSP's successfully gapped: 28
Length of query: 421
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 317
Effective length of database: 12,493,815
Effective search space: 3960539355
Effective search space used: 3960539355
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001760
(1263 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003355423.1| PREDICTED: tubulin alpha-1C chain isoform 1 ... 697 0.0
Alignment gi|NP_001038009.1| tubulin alpha-1B chain [Sus scrofa]. 697 0.0
Alignment gi|XP_001928233.1| PREDICTED: tubulin alpha-1D chain [Sus scrof... 693 0.0
Alignment gi|XP_001929621.1| PREDICTED: tubulin alpha-3 chain [Sus scrofa]. 689 0.0
Alignment gi|XP_003133048.1| PREDICTED: tubulin alpha-3 chain-like [Sus s... 689 0.0
Alignment gi|XP_001928370.3| PREDICTED: tubulin alpha-4A chain [Sus scrof... 682 0.0
Alignment gi|XP_003126645.2| PREDICTED: tubulin alpha-8 chain-like [Sus s... 622 e-178
Alignment gi|XP_003355425.1| PREDICTED: tubulin alpha-1C chain isoform 3 ... 620 e-178
Alignment gi|XP_003355424.1| PREDICTED: tubulin alpha-1C chain isoform 2 ... 620 e-178
Alignment gi|XP_003361673.1| PREDICTED: tubulin alpha-8 chain-like [Sus s... 554 e-158
>ref|XP_003355423.1| PREDICTED: tubulin alpha-1C chain isoform 1 [Sus scrofa].
Length = 449
Score = 697 bits (1799), Expect = 0.0
Identities = 345/379 (91%), Positives = 352/379 (92%), Gaps = 1/379 (0%)
Frame = +3
Query: 129 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 309 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 489 RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
RIRKLADQCTGLQGFLVFH LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 669 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRL+SQIVSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLMSQIVSSITA 240
Query: 849 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 300
Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR+IQFVDWCPTGFKV P
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP 360
Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
P ++QRAVCMLS
Sbjct: 361 TVVPGGDLAKVQRAVCMLS 379
>ref|NP_001038009.1| tubulin alpha-1B chain [Sus scrofa].
Length = 451
Score = 697 bits (1798), Expect = 0.0
Identities = 345/379 (91%), Positives = 352/379 (92%), Gaps = 1/379 (0%)
Frame = +3
Query: 129 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 309 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 489 RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
RIRKLADQCTGLQGFLVFH LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 669 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
Query: 849 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR+IQFVDWCPTGFKV P
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP 360
Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
P ++QRAVCMLS
Sbjct: 361 TVVPGGDLAKVQRAVCMLS 379
>ref|XP_001928233.1| PREDICTED: tubulin alpha-1D chain [Sus scrofa].
Length = 452
Score = 693 bits (1789), Expect = 0.0
Identities = 341/379 (89%), Positives = 351/379 (92%), Gaps = 1/379 (0%)
Frame = +3
Query: 129 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
MRECIS+HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 309 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKE+IDLVLD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 120
Query: 489 RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
RIRKLADQCTGLQGFL+FH LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121 RIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 669 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 849 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR+IQFVDWCPTGFKV P
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPP 360
Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
P ++QRAVCMLS
Sbjct: 361 TVVPRGDLAKVQRAVCMLS 379
>ref|XP_001929621.1| PREDICTED: tubulin alpha-3 chain [Sus scrofa].
Length = 450
Score = 689 bits (1778), Expect = 0.0
Identities = 338/379 (89%), Positives = 349/379 (92%), Gaps = 1/379 (0%)
Frame = +3
Query: 129 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 309 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLD
Sbjct: 61 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 120
Query: 489 RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
RIRKLAD CTGLQGFL+FH LLMERLSVDYGKKSKLEF+IYPAPQVSTA
Sbjct: 121 RIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTA 180
Query: 669 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 849 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
QMVKCDPRHGKYMACC+LYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV P
Sbjct: 301 QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360
Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
P ++QRAVCMLS
Sbjct: 361 TVVPGGDLAKVQRAVCMLS 379
>ref|XP_003133048.1| PREDICTED: tubulin alpha-3 chain-like [Sus scrofa].
Length = 450
Score = 689 bits (1778), Expect = 0.0
Identities = 338/379 (89%), Positives = 349/379 (92%), Gaps = 1/379 (0%)
Frame = +3
Query: 129 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 309 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLD
Sbjct: 61 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 120
Query: 489 RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
RIRKLAD CTGLQGFL+FH LLMERLSVDYGKKSKLEF+IYPAPQVSTA
Sbjct: 121 RIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTA 180
Query: 669 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 849 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
QMVKCDPRHGKYMACC+LYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV P
Sbjct: 301 QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360
Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
P ++QRAVCMLS
Sbjct: 361 TVVPGGDLAKVQRAVCMLS 379
>ref|XP_001928370.3| PREDICTED: tubulin alpha-4A chain [Sus scrofa].
Length = 448
Score = 682 bits (1761), Expect = 0.0
Identities = 336/379 (88%), Positives = 347/379 (91%), Gaps = 1/379 (0%)
Frame = +3
Query: 129 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
MRECIS+HVGQAGVQ+GNACWELYCLEHGIQPDGQMPSDKTIGGGDDSF TFF ETGAGK
Sbjct: 1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGK 60
Query: 309 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
HVPRAVFVDLEPTVIDE+R G YRQLFHPEQLITGKEDAANNYARGHYTIGKEIID VLD
Sbjct: 61 HVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLD 120
Query: 489 RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
RIRKL+DQCTGLQGFLVFH LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121 RIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 669 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
Query: 849 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR+IQFVDWCPTGFKV P
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPP 360
Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
P ++QRAVCMLS
Sbjct: 361 TVVPGGDLAKVQRAVCMLS 379
>ref|XP_003126645.2| PREDICTED: tubulin alpha-8 chain-like [Sus scrofa].
Length = 413
Score = 622 bits (1604), Expect = e-178
Identities = 300/356 (84%), Positives = 319/356 (89%)
Frame = +3
Query: 120 VTTMRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETG 299
V RECIS+HVGQAGVQIGNACWEL+CLEHGIQ DG + + DDSF TFFSETG
Sbjct: 48 VGPFRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETG 107
Query: 300 AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDL 479
GKHVPRAV VDLEPTV+DEVR GTYRQLFHPEQLITGKEDAANNYARGHYT+GKE IDL
Sbjct: 108 NGKHVPRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDL 167
Query: 480 VLDRIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQV 659
VLDRIRKL D C+GLQGFL+FH LLMERLS+DYGKKSKLEF+IYPAPQV
Sbjct: 168 VLDRIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQV 227
Query: 660 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSS 839
STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSS
Sbjct: 228 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSS 287
Query: 840 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFE 1019
ITASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQL+VAEIT++CFE
Sbjct: 288 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFE 347
Query: 1020 PANQMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKV 1187
P +QMVKCDPRHGKYMACC+LYRGD+VPKDVN AIA ++TKR IQFVDWCPTGFKV
Sbjct: 348 PNSQMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKV 403
>ref|XP_003355425.1| PREDICTED: tubulin alpha-1C chain isoform 3 [Sus scrofa].
Length = 414
Score = 620 bits (1600), Expect = e-178
Identities = 310/344 (90%), Positives = 317/344 (92%), Gaps = 1/344 (0%)
Frame = +3
Query: 234 MPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITG 413
MPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITG
Sbjct: 1 MPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITG 60
Query: 414 KEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLME 593
KEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFH LLME
Sbjct: 61 KEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLME 120
Query: 594 RLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 773
RLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR
Sbjct: 121 RLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 180
Query: 774 NLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV 953
NLDIERPTYTNLNRL+SQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV
Sbjct: 181 NLDIERPTYTNLNRLMSQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV 240
Query: 954 ISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPL 1133
ISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA +
Sbjct: 241 ISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATI 300
Query: 1134 QTKRNIQFVDWCPTGFKVAF-ITDPHCGPW*RPWQIQRAVCMLS 1262
+TKR+IQFVDWCPTGFKV P P ++QRAVCMLS
Sbjct: 301 KTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 344
>ref|XP_003355424.1| PREDICTED: tubulin alpha-1C chain isoform 2 [Sus scrofa].
Length = 414
Score = 620 bits (1600), Expect = e-178
Identities = 310/344 (90%), Positives = 317/344 (92%), Gaps = 1/344 (0%)
Frame = +3
Query: 234 MPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITG 413
MPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITG
Sbjct: 1 MPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITG 60
Query: 414 KEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLME 593
KEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFH LLME
Sbjct: 61 KEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLME 120
Query: 594 RLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 773
RLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR
Sbjct: 121 RLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 180
Query: 774 NLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV 953
NLDIERPTYTNLNRL+SQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV
Sbjct: 181 NLDIERPTYTNLNRLMSQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV 240
Query: 954 ISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPL 1133
ISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA +
Sbjct: 241 ISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATI 300
Query: 1134 QTKRNIQFVDWCPTGFKVAF-ITDPHCGPW*RPWQIQRAVCMLS 1262
+TKR+IQFVDWCPTGFKV P P ++QRAVCMLS
Sbjct: 301 KTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 344
>ref|XP_003361673.1| PREDICTED: tubulin alpha-8 chain-like [Sus scrofa].
Length = 666
Score = 554 bits (1427), Expect = e-158
Identities = 268/314 (85%), Positives = 284/314 (90%)
Frame = +3
Query: 264 DDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYAR 443
DDSF TFFSETG GKHVPRAV VDLEPTV+DEVR GTYRQLFHPEQLITGKEDAANNYAR
Sbjct: 270 DDSFTTFFSETGNGKHVPRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYAR 329
Query: 444 GHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKS 623
GHYT+GKE IDLVLDRIRKL D C+GLQGFL+FH LLMERLS+DYGKKS
Sbjct: 330 GHYTVGKESIDLVLDRIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKS 389
Query: 624 KLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYT 803
KLEF+IYPAPQVSTAVVEPYNSILTTHTTLEHS+ AFMVDNEAIYDICRRNLDIERPTYT
Sbjct: 390 KLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSESAFMVDNEAIYDICRRNLDIERPTYT 449
Query: 804 NLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQ 983
NLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQ
Sbjct: 450 NLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQ 509
Query: 984 LTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVD 1163
L+VAEIT++CFEP +QMVKCDPRHGKYMACC+LYRGD+VPKDVN AIA ++TKR IQFVD
Sbjct: 510 LSVAEITSSCFEPNSQMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVD 569
Query: 1164 WCPTGFKVAFITDP 1205
WCPTGFKV P
Sbjct: 570 WCPTGFKVGINYQP 583
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,634,181
Number of extensions: 1061173
Number of successful extensions: 3845
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 3795
Number of HSP's successfully gapped: 29
Length of query: 421
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 319
Effective length of database: 8,804,438
Effective search space: 2808615722
Effective search space used: 2808615722
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001760
(1263 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 1332 0.0
Sscrofa_Chr13 1183 0.0
Sscrofa_Chr03 835 0.0
Sscrofa_Chr11 739 0.0
Sscrofa_Chr15 511 e-142
Sscrofa_Chr14 436 e-119
gb|GL895007.2| Sus scrofa unplaced genomic scaffold ChrUScaf2891 424 e-116
gb|GL895352.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 278 7e-72
Sscrofa_Chr10 66 5e-08
>Sscrofa_Chr05
|| Length = 111506441
Score = 1332 bits (672), Expect = 0.0
Identities = 744/764 (97%), Gaps = 3/764 (0%)
Strand = Plus / Plus
Query: 503 ggctgaccagtgcacaggtcttcagggcttcttggttttccacagctttggcgggggaac 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15675141 ggctgaccagtgcacaggtcttcagggcttcttggttttccacagctttggcgggggaac 15675200
Query: 563 gggttctgggttcacctccctgctgatggaacgtctctctgtcgattatggcaagaagtc 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15675201 gggttctgggttcacctccctgctgatggaacgtctctctgtcgattatggcaagaagtc 15675260
Query: 623 caagctggagttctccatttacccagccccccaggtttccacagctgtagttgagcccta 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15675261 caagctggagttctccatttacccagccccccaggtttccacagctgtagttgagcccta 15675320
Query: 683 caactccatcctcaccacccacaccaccctggagcactctgattgtgccttcatggtaga 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15675321 caactccatcctcaccacccacaccaccctggagcactctgattgtgccttcatggtaga 15675380
Query: 743 caatgaggccatctatgacatctgtcgtagaaaccttgatattgaacgcccaacctacac 802
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15675381 caatgaggccatctacgacatctgtcgtagaaaccttgatattgaacgcccaacctacac 15675440
Query: 803 taatctgaaccgccttattagccaaattgtgtcctccatcactgcttccctgaggtttga 862
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 15675441 taatctgaaccgcctcatgagccaaattgtgtcctccatcactgcttccctgaggtttga 15675500
Query: 863 tggggccctgaatgttgatctgacagaattccagaccaacctggtgccctacccccgcat 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15675501 tggggccctgaatgttgatctgacagaattccagaccaacctggtgccctacccccgcat 15675560
Query: 923 ccatttccctctggccacatacgcccccgtcatctctgctgaaaaagcctaccatgaaca 982
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 15675561 ccatttccctctggccacatacgcccccgtcatctctgctgagaaagcctaccatgaaca 15675620
Query: 983 gcttactgtagcagagatcactaatgcttgctttgagccagccaaccagatggtgaaatg 1042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15675621 gcttactgtagcagagatcactaatgcttgctttgagccagccaaccagatggtgaaatg 15675680
Query: 1043 tgaccctcgccatggtaaatacatggcctgctgcctgttgtaccgtggtgacttggttcc 1102
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 15675681 tgaccctcgccatggtaaatacatggcctgctgcctgttgtaccgtggtgacgtggttcc 15675740
Query: 1103 caaagacgtcaatgccgccattgcccccctccaaaccaagcgcaacatccagtttgtgga 1162
||||||||||||||||||||| ||| || || | |||||||||| |||||||||||||||
Sbjct: 15675741 caaagacgtcaatgccgccatcgccaccatcaagaccaagcgcagcatccagtttgtgga 15675800
Query: 1163 ctggtgccccactggcttcaagg-tggcatttatta-cagacccccactgtggtccctgg 1220
||||||||||||||||||||||| ||||||| |||| ||| |||||||||||||||||||
Sbjct: 15675801 ctggtgccccactggcttcaaggttggcattaattaccagccccccactgtggtccctgg 15675860
Query: 1221 tgaagaccctggcaaa-tacagcgggcagtgtgcatgctgagca 1263
|| ||||| | |||| |||||||||||||||||||||||||||
Sbjct: 15675861 tggagacctggccaaagtacagcgggcagtgtgcatgctgagca 15675904
Score = 1324 bits (668), Expect = 0.0
Identities = 743/764 (97%), Gaps = 3/764 (0%)
Strand = Plus / Minus
Query: 503 ggctgaccagtgcacaggtcttcagggcttcttggttttccacagctttggcgggggaac 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15557777 ggctgaccagtgcacaggtcttcagggcttcttggttttccacagctttggcgggggaac 15557718
Query: 563 gggttctgggttcacctccctgctgatggaacgtctctctgtcgattatggcaagaagtc 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15557717 gggttctgggttcacctccctgctgatggaacgtctctctgtcgattatggcaagaagtc 15557658
Query: 623 caagctggagttctccatttacccagccccccaggtttccacagctgtagttgagcccta 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15557657 caagctggagttctccatttacccagccccccaggtttccacagctgtagttgagcccta 15557598
Query: 683 caactccatcctcaccacccacaccaccctggagcactctgattgtgccttcatggtaga 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15557597 caactccatcctcaccacccacaccaccctggagcactctgattgtgccttcatggtaga 15557538
Query: 743 caatgaggccatctatgacatctgtcgtagaaaccttgatattgaacgcccaacctacac 802
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 15557537 caatgaggccatctatgacatctgtcgtagaaacctcgatattgaacgcccaacctacac 15557478
Query: 803 taatctgaaccgccttattagccaaattgtgtcctccatcactgcttccctgaggtttga 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15557477 taatctgaaccgccttattagccaaattgtgtcctccatcactgcttccctgaggtttga 15557418
Query: 863 tggggccctgaatgttgatctgacagaattccagaccaacctggtgccctacccccgcat 922
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15557417 tggggccctgaacgttgatctgacagaattccagaccaacctggtgccctacccccgcat 15557358
Query: 923 ccatttccctctggccacatacgcccccgtcatctctgctgaaaaagcctaccatgaaca 982
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 15557357 ccatttccctctggccacatacgcccctgtcatctctgctgagaaagcctaccatgaaca 15557298
Query: 983 gcttactgtagcagagatcactaatgcttgctttgagccagccaaccagatggtgaaatg 1042
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15557297 gctttctgtagcagagatcactaatgcttgctttgagccagccaaccagatggtgaaatg 15557238
Query: 1043 tgaccctcgccatggtaaatacatggcctgctgcctgttgtaccgtggtgacttggttcc 1102
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 15557237 tgaccctcgccatggtaaatacatggcctgctgcctgttgtaccgtggtgacgtggttcc 15557178
Query: 1103 caaagacgtcaatgccgccattgcccccctccaaaccaagcgcaacatccagtttgtgga 1162
||||||||||||||| ||||||||| || || | |||||||||| |||||||||||||||
Sbjct: 15557177 caaagacgtcaatgctgccattgccaccatcaagaccaagcgcagcatccagtttgtgga 15557118
Query: 1163 ctggtgccccactggcttcaagg-tggcatttatta-cagacccccactgtggtccctgg 1220
||||||||||||||||||||||| ||||||| |||| ||| |||||||||||||||||||
Sbjct: 15557117 ctggtgccccactggcttcaaggttggcattaattaccagccccccactgtggtccctgg 15557058
Query: 1221 tgaagaccctggcaaa-tacagcgggcagtgtgcatgctgagca 1263
|| ||||| | |||| |||||||||||||||||||||||||||
Sbjct: 15557057 tggagacctggccaaagtacagcgggcagtgtgcatgctgagca 15557014
Score = 1213 bits (612), Expect = 0.0
Identities = 729/764 (95%), Gaps = 3/764 (0%)
Strand = Plus / Minus
Query: 503 ggctgaccagtgcacaggtcttcagggcttcttggttttccacagctttggcgggggaac 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15593636 ggctgaccagtgcacaggtcttcagggcttcttggttttccacagctttggcgggggaac 15593577
Query: 563 gggttctgggttcacctccctgctgatggaacgtctctctgtcgattatggcaagaagtc 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15593576 gggttctgggttcacctccctgctgatggaacgtctctctgtcgattatggcaagaagtc 15593517
Query: 623 caagctggagttctccatttacccagccccccaggtttccacagctgtagttgagcccta 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15593516 caagctggagttctccatttacccagccccccaggtttccacagctgtagttgagcccta 15593457
Query: 683 caactccatcctcaccacccacaccaccctggagcactctgattgtgccttcatggtaga 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15593456 caactccatcctcaccacccacaccaccctggagcactctgattgtgccttcatggtaga 15593397
Query: 743 caatgaggccatctatgacatctgtcgtagaaaccttgatattgaacgcccaacctacac 802
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 15593396 caatgaggccatctatgacatctgtcgtagaaacctcgatattgaacgcccaacctacac 15593337
Query: 803 taatctgaaccgccttattagccaaattgtgtcctccatcactgcttccctgaggtttga 862
||| ||||| | | || | || |||||||||||||||||||||||||||||||||||
Sbjct: 15593336 taacctgaataggttgataggtcagattgtgtcctccatcactgcttccctgaggtttga 15593277
Query: 863 tggggccctgaatgttgatctgacagaattccagaccaacctggtgccctacccccgcat 922
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 15593276 tggggccctgaatgttgatctgacagaattccagaccaacctggtgccctatccccgcat 15593217
Query: 923 ccatttccctctggccacatacgcccccgtcatctctgctgaaaaagcctaccatgaaca 982
||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||
Sbjct: 15593216 ccatttccctctggccacatatgcccctgtcatctctgctgagaaagcctaccatgaaca 15593157
Query: 983 gcttactgtagcagagatcactaatgcttgctttgagccagccaaccagatggtgaaatg 1042
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 15593156 gctttctgtagcagagatcaccaatgcttgctttgagccagccaaccagatggtgaaatg 15593097
Query: 1043 tgaccctcgccatggtaaatacatggcctgctgcctgttgtaccgtggtgacttggttcc 1102
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 15593096 tgaccctcgccatggtaaatacatggcctgctgcctgttgtaccgtggtgacgtggttcc 15593037
Query: 1103 caaagacgtcaatgccgccattgcccccctccaaaccaagcgcaacatccagtttgtgga 1162
||||||||||||||||||||| ||| || || | |||||||| | |||||||||||||||
Sbjct: 15593036 caaagacgtcaatgccgccatcgccaccatcaagaccaagcgtaccatccagtttgtgga 15592977
Query: 1163 ctggtgccccactggcttcaagg-tggcatttatta-cagacccccactgtggtccctgg 1220
||||||||||||||||||||||| ||||||| |||| ||| |||||||||||||||| ||
Sbjct: 15592976 ctggtgccccactggcttcaaggttggcattaattaccagccccccactgtggtccccgg 15592917
Query: 1221 tgaagaccctggcaaa-tacagcgggcagtgtgcatgctgagca 1263
|| ||||| | |||| |||||||||||||||||||||||||||
Sbjct: 15592916 tggagacctggccaaagtacagcgggcagtgtgcatgctgagca 15592873
Score = 444 bits (224), Expect = e-122
Identities = 224/224 (100%)
Strand = Plus / Minus
Query: 131 gcgtgagtgcatctccatccacgttggccaagctggtgtccagatcggcaatgcctgctg 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15558559 gcgtgagtgcatctccatccacgttggccaagctggtgtccagatcggcaatgcctgctg 15558500
Query: 191 ggagctctactgcctggaacacggcatccagcccgatggccagatgccgagtgacaagac 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15558499 ggagctctactgcctggaacacggcatccagcccgatggccagatgccgagtgacaagac 15558440
Query: 251 cattgggggaggagatgactccttcaacaccttcttcagtgagacaggcgctggcaagca 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15558439 cattgggggaggagatgactccttcaacaccttcttcagtgagacaggcgctggcaagca 15558380
Query: 311 tgtgcccagggcagtgtttgtagacctggaacccacagtcattg 354
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15558379 tgtgcccagggcagtgtttgtagacctggaacccacagtcattg 15558336
Score = 444 bits (224), Expect = e-122
Identities = 224/224 (100%)
Strand = Plus / Minus
Query: 131 gcgtgagtgcatctccatccacgttggccaagctggtgtccagatcggcaatgcctgctg 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15594415 gcgtgagtgcatctccatccacgttggccaagctggtgtccagatcggcaatgcctgctg 15594356
Query: 191 ggagctctactgcctggaacacggcatccagcccgatggccagatgccgagtgacaagac 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15594355 ggagctctactgcctggaacacggcatccagcccgatggccagatgccgagtgacaagac 15594296
Query: 251 cattgggggaggagatgactccttcaacaccttcttcagtgagacaggcgctggcaagca 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15594295 cattgggggaggagatgactccttcaacaccttcttcagtgagacaggcgctggcaagca 15594236
Query: 311 tgtgcccagggcagtgtttgtagacctggaacccacagtcattg 354
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15594235 tgtgcccagggcagtgtttgtagacctggaacccacagtcattg 15594192
Score = 440 bits (222), Expect = e-121
Identities = 552/662 (83%)
Strand = Plus / Plus
Query: 525 cagggcttcttggttttccacagctttggcgggggaacgggttctgggttcacctccctg 584
||||||||| || | |||||||| ||||| ||||| || || ||||| ||||| || |||
Sbjct: 72522876 cagggcttcctgatcttccacagttttggggggggcaccggctctggcttcacttctctg 72522935
Query: 585 ctgatggaacgtctctctgtcgattatggcaagaagtccaagctggagttctccatttac 644
||||||||||| ||||| | ||||| ||||||||||||||||| ||||| |||| |||
Sbjct: 72522936 ctgatggaacgcctctccctggattacggcaagaagtccaagctagagtttgccatctac 72522995
Query: 645 ccagccccccaggtttccacagctgtagttgagccctacaactccatcctcaccacccac 704
|| || |||||||| ||||| || || || || ||||||||||||||||| |||||||||
Sbjct: 72522996 ccggcaccccaggtctccacggccgtggtggaaccctacaactccatcctgaccacccac 72523055
Query: 705 accaccctggagcactctgattgtgccttcatggtagacaatgaggccatctatgacatc 764
||||||||||| || || || |||||||||||||| ||||| ||||||||||| ||||||
Sbjct: 72523056 accaccctggaacattcagactgtgccttcatggtggacaacgaggccatctacgacatc 72523115
Query: 765 tgtcgtagaaaccttgatattgaacgcccaacctacactaatctgaaccgccttattagc 824
|| || || ||||| || || || ||||| |||||||| || || |||||||| || |||
Sbjct: 72523116 tgccgcaggaacctggacatcgagcgccccacctacaccaacctcaaccgcctcatcagc 72523175
Query: 825 caaattgtgtcctccatcactgcttccctgaggtttgatggggccctgaatgttgatctg 884
|| || |||||||||||||| || |||||| | |||||||||||||| || || || |||
Sbjct: 72523176 cagatcgtgtcctccatcaccgcctccctgcgctttgatggggccctcaacgtggacctg 72523235
Query: 885 acagaattccagaccaacctggtgccctacccccgcatccatttccctctggccacatac 944
|| || ||||||||||||||||||||||||||||||||||| ||||| |||| ||| |||
Sbjct: 72523236 accgagttccagaccaacctggtgccctacccccgcatccacttccccctggtcacctac 72523295
Query: 945 gcccccgtcatctctgctgaaaaagcctaccatgaacagcttactgtagcagagatcact 1004
|| ||| ||||||||||||| || |||||||| || ||||| |||| || ||||||||
Sbjct: 72523296 gcacccatcatctctgctgagaaggcctaccacgagcagctctctgtggctgagatcacc 72523355
Query: 1005 aatgcttgctttgagccagccaaccagatggtgaaatgtgaccctcgccatggtaaatac 1064
| | ||||||||||| || |||||||||||| ||||| || || ||||| || |||
Sbjct: 72523356 agctcctgctttgagcccaacagccagatggtgaagtgtgatccccgtcatggcaagtac 72523415
Query: 1065 atggcctgctgcctgttgtaccgtggtgacttggttcccaaagacgtcaatgccgccatt 1124
|||||||||||| || | ||||| || ||| |||| ||||| |||||||| | |||||||
Sbjct: 72523416 atggcctgctgcatgctctaccggggggacgtggtgcccaaggacgtcaacgtcgccatt 72523475
Query: 1125 gcccccctccaaaccaagcgcaacatccagtttgtggactggtgccccactggcttcaag 1184
||| || || | |||||| | | |||||||||||| |||||||| ||||| |||||||||
Sbjct: 72523476 gccgccatcaagaccaagaggaccatccagtttgtagactggtgtcccacaggcttcaag 72523535
Query: 1185 gt 1186
||
Sbjct: 72523536 gt 72523537
Score = 436 bits (220), Expect = e-119
Identities = 223/224 (99%)
Strand = Plus / Plus
Query: 131 gcgtgagtgcatctccatccacgttggccaagctggtgtccagatcggcaatgcctgctg 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15672306 gcgtgagtgcatctccatccacgttggccaagctggtgtccagatcggcaatgcctgctg 15672365
Query: 191 ggagctctactgcctggaacacggcatccagcccgatggccagatgccgagtgacaagac 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15672366 ggagctctactgcctggaacacggcatccagcccgatggccagatgccgagtgacaagac 15672425
Query: 251 cattgggggaggagatgactccttcaacaccttcttcagtgagacaggcgctggcaagca 310
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 15672426 cattgggggaggagatgactccttcaacaccttcttcagtgagacaggagctggcaagca 15672485
Query: 311 tgtgcccagggcagtgtttgtagacctggaacccacagtcattg 354
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15672486 tgtgcccagggcagtgtttgtagacctggaacccacagtcattg 15672529
Score = 414 bits (209), Expect = e-113
Identities = 359/405 (88%), Gaps = 18/405 (4%)
Strand = Plus / Minus
Query: 863 tggggccctgaatgttgatctgacagaattccagaccaacctggtgccctacccccgcat 922
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 23375374 tggggccctgaatgttgatctgacagaattccagaccaatctggtgccctacccccgcat 23375315
Query: 923 ccatttccctctggccacatacgcccccgtcatctctgctgaaaaagcctaccatgaaca 982
||||||| ||||||||||||||||||| | ||| | |||||| ||||
Sbjct: 23375314 ccatttctctctggccacatacgcccctg------ctgtt--------ctaccaggaacg 23375269
Query: 983 gcttactgtagcagagatcactaatgcttgctttgagccagccaaccagatggtgaaatg 1042
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23375268 gctttctgtagcagagatcactaatgcttgctttgagccagccaaccagatggtgaaatg 23375209
Query: 1043 tgaccctcgccatggtaaatacatggcctgctgcctgttgtaccgtggtgacttggttcc 1102
||||||| ||||||||||||||||||||| ||||| ||||||| ||||||| |||||||
Sbjct: 23375208 cgaccctcaccatggtaaatacatggcctgatgcctattgtaccatggtgacgtggttcc 23375149
Query: 1103 caaagacgtcaatgccgccattgcccccctccaaaccaagcgcaacatccagtttgtgga 1162
||||||| ||||||||||||||||| || || | |||||||||| |||||||||||||||
Sbjct: 23375148 caaagacatcaatgccgccattgccaccatcaagaccaagcgcagcatccagtttgtgga 23375089
Query: 1163 ctggtgccccactggcttcaagg-tggcatttatta-cagacccccactgtggt-ccctg 1219
||||||||||||||||||||||| ||||||| |||| ||| ||||||||||||| ||||
Sbjct: 23375088 ctggtgccccactggcttcaaggttggcattaattaccagccccccactgtggtggcctg 23375029
Query: 1220 gtgaagaccctggcaaa-tacagcgggcagtgtgcatgctgagca 1263
| ||||| | |||| |||||||||||||||||||||||||||
Sbjct: 23375028 acggagacctggccaaagtacagcgggcagtgtgcatgctgagca 23374984
Score = 414 bits (209), Expect = e-113
Identities = 359/405 (88%), Gaps = 18/405 (4%)
Strand = Plus / Minus
Query: 863 tggggccctgaatgttgatctgacagaattccagaccaacctggtgccctacccccgcat 922
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 23553189 tggggccctgaatgttgatctgacagaattccagaccaatctggtgccctacccccgcat 23553130
Query: 923 ccatttccctctggccacatacgcccccgtcatctctgctgaaaaagcctaccatgaaca 982
||||||| ||||||||||||||||||| | ||| | |||||| ||||
Sbjct: 23553129 ccatttctctctggccacatacgcccctg------ctgtt--------ctaccaggaacg 23553084
Query: 983 gcttactgtagcagagatcactaatgcttgctttgagccagccaaccagatggtgaaatg 1042
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23553083 gctttctgtagcagagatcactaatgcttgctttgagccagccaaccagatggtgaaatg 23553024
Query: 1043 tgaccctcgccatggtaaatacatggcctgctgcctgttgtaccgtggtgacttggttcc 1102
||||||| ||||||||||||||||||||| ||||| ||||||| ||||||| |||||||
Sbjct: 23553023 cgaccctcaccatggtaaatacatggcctgatgcctattgtaccatggtgacgtggttcc 23552964
Query: 1103 caaagacgtcaatgccgccattgcccccctccaaaccaagcgcaacatccagtttgtgga 1162
||||||| ||||||||||||||||| || || | |||||||||| |||||||||||||||
Sbjct: 23552963 caaagacatcaatgccgccattgccaccatcaagaccaagcgcagcatccagtttgtgga 23552904
Query: 1163 ctggtgccccactggcttcaagg-tggcatttatta-cagacccccactgtggt-ccctg 1219
||||||||||||||||||||||| ||||||| |||| ||| ||||||||||||| ||||
Sbjct: 23552903 ctggtgccccactggcttcaaggttggcattaattaccagccccccactgtggtggcctg 23552844
Query: 1220 gtgaagaccctggcaaa-tacagcgggcagtgtgcatgctgagca 1263
| ||||| | |||| |||||||||||||||||||||||||||
Sbjct: 23552843 acggagacctggccaaagtacagcgggcagtgtgcatgctgagca 23552799
Score = 299 bits (151), Expect = 2e-78
Identities = 151/151 (100%)
Strand = Plus / Minus
Query: 354 gatgaagttcgcactggcacctaccgccagctcttccaccctgagcagctcatcacaggc 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15558187 gatgaagttcgcactggcacctaccgccagctcttccaccctgagcagctcatcacaggc 15558128
Query: 414 aaggaagatgctgccaataactatgcccgaggtcactacaccattggcaaggagatcatt 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15558127 aaggaagatgctgccaataactatgcccgaggtcactacaccattggcaaggagatcatt 15558068
Query: 474 gacctcgtcttggaccgaattcggaaactgg 504
|||||||||||||||||||||||||||||||
Sbjct: 15558067 gacctcgtcttggaccgaattcggaaactgg 15558037
Score = 299 bits (151), Expect = 2e-78
Identities = 151/151 (100%)
Strand = Plus / Minus
Query: 354 gatgaagttcgcactggcacctaccgccagctcttccaccctgagcagctcatcacaggc 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15594043 gatgaagttcgcactggcacctaccgccagctcttccaccctgagcagctcatcacaggc 15593984
Query: 414 aaggaagatgctgccaataactatgcccgaggtcactacaccattggcaaggagatcatt 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15593983 aaggaagatgctgccaataactatgcccgaggtcactacaccattggcaaggagatcatt 15593924
Query: 474 gacctcgtcttggaccgaattcggaaactgg 504
|||||||||||||||||||||||||||||||
Sbjct: 15593923 gacctcgtcttggaccgaattcggaaactgg 15593893
Score = 299 bits (151), Expect = 2e-78
Identities = 151/151 (100%)
Strand = Plus / Plus
Query: 354 gatgaagttcgcactggcacctaccgccagctcttccaccctgagcagctcatcacaggc 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15672678 gatgaagttcgcactggcacctaccgccagctcttccaccctgagcagctcatcacaggc 15672737
Query: 414 aaggaagatgctgccaataactatgcccgaggtcactacaccattggcaaggagatcatt 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15672738 aaggaagatgctgccaataactatgcccgaggtcactacaccattggcaaggagatcatt 15672797
Query: 474 gacctcgtcttggaccgaattcggaaactgg 504
|||||||||||||||||||||||||||||||
Sbjct: 15672798 gacctcgtcttggaccgaattcggaaactgg 15672828
Score = 194 bits (98), Expect = 8e-47
Identities = 98/98 (100%)
Strand = Plus / Minus
Query: 34 agtgcgttactcacctcgactcttagcttgtcggggacggtaaccaggactcggtgtcta 93
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15559999 agtgcgttactcacctcgactcttagcttgtcggggacggtaaccaggactcggtgtcta 15559940
Query: 94 ctcctgttgcctgcgcttgctgaccggtaaccaccatg 131
||||||||||||||||||||||||||||||||||||||
Sbjct: 15559939 ctcctgttgcctgcgcttgctgaccggtaaccaccatg 15559902
Score = 103 bits (52), Expect = 2e-19
Identities = 76/84 (90%)
Strand = Plus / Plus
Query: 138 tgcatctccatccacgttggccaagctggtgtccagatcggcaatgcctgctgggagctc 197
||||| ||| ||||||| |||||||| || || |||||||||||||||||||||||||||
Sbjct: 72519106 tgcatatccgtccacgtgggccaagccggggttcagatcggcaatgcctgctgggagctc 72519165
Query: 198 tactgcctggaacacggcatccag 221
| ||||||||| ||||||||||||
Sbjct: 72519166 ttctgcctggagcacggcatccag 72519189
Score = 89.7 bits (45), Expect = 3e-15
Identities = 84/97 (86%)
Strand = Plus / Plus
Query: 372 acctaccgccagctcttccaccctgagcagctcatcacaggcaaggaagatgctgccaat 431
|||||||||||||||||||| || |||||||| |||||||| || || ||||| |||||
Sbjct: 72520765 acctaccgccagctcttccatccagagcagctgatcacaggaaaagaggatgcagccaac 72520824
Query: 432 aactatgcccgaggtcactacaccattggcaaggaga 468
||||||||||| || |||||||| | ||||||||||
Sbjct: 72520825 aactatgcccggggccactacacagtgggcaaggaga 72520861
>Sscrofa_Chr13
|| Length = 218635234
Score = 1183 bits (597), Expect = 0.0
Identities = 1071/1227 (87%), Gaps = 44/1227 (3%)
Strand = Plus / Minus
Query: 43 ctcacctcgactcttagcttgtcggggacggtaaccaggactcggtgtctactcctgttg 102
||||||| ||||||||||||||| | || |||||||||||||| ||||||||||||||||
Sbjct: 106118504 ctcaccttgactcttagcttgtcagtgatggtaaccaggactcagtgtctactcctgttg 106118445
Query: 103 cctgcgcttgctgaccggtaaccaccatgcgtgagtgcatctccatccacgttggccaag 162
||||| ||||||||| || | ||| || ||||||||||||| |||||| |||||||||
Sbjct: 106118444 cctgcacttgctgactggcagccatggtgtgtgagtgcatctctatccacattggccaag 106118385
Query: 163 ctggtgtccagatcggcaatgcctgctgggagctctactgcctggaacacggcatccagc 222
|||||||||||||| ||| ||||||||||||||| ||||||||||||||
Sbjct: 106118384 ctggtgtccagatcagcagtgcctgctgggagctatactgcctggaaca----------- 106118336
Query: 223 ccgatggccagatgccgagtgacaagaccattgggggaggagatgactccttcaacacct 282
||| || ||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 106118335 ----------gataccaagtaacaagacccctgggggaggagatgactccttcaacacct 106118286
Query: 283 tcttca-gtgagacaggcgctggcaagcatgtgcccagggcagtgtttgtagacctggaa 341
|||| | |||||| ||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 106118285 tctttaagtgagataggagctggcaagcatgtgcccagggcag-gtttgtagacctggaa 106118227
Query: 342 cccacagtcattgatgaagttcgcactggcacctaccgccagctcttccaccctgagcag 401
||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||
Sbjct: 106118226 cccacagtcattgatgaagttagcactggcacctactgcctgctcttccaccctgagcag 106118167
Query: 402 ctcatcacaggcaaggaagatgctgccaataactatgcccgaggtcactacaccattggc 461
|||||||||||||| |||||||||||||||||||| || || ||||||| ||||||||
Sbjct: 106118166 ctcatcacaggcaaaaaagatgctgccaataactattccagaagtcactatcccattggc 106118107
Query: 462 aaggagatcattgacctcgtcttggaccgaattcggaaactggctgaccagtgcacaggt 521
|||||||||||||||||| ||||||||| | ||| ||| |||||||||||||||||||||
Sbjct: 106118106 aaggagatcattgacctcatcttggacccagttcagaa-ctggctgaccagtgcacaggt 106118048
Query: 522 cttcagggcttcttggttttccacagctttggcgggggaa-cgggttctgggttcacctc 580
|||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||
Sbjct: 106118047 cttcagggcttcttggttttccacagctttggttggggaaactggttctgggttcacctc 106117988
Query: 581 cctgctgatggaacgtctctctgtcgattatggcaagaagtccaagctggagttctccat 640
||||||||||||||| |||||||||||||||| || |||||||||||||| ||||||||
Sbjct: 106117987 tctgctgatggaacgtttctctgtcgattatgggaataagtccaagctggaattctccat 106117928
Query: 641 ttacccagccccccaggtttccacagctgtagttgagccctacaactccatcctcaccac 700
||| |||||||| |||||||||||||||||| |||||| |||| |||||||| |||||
Sbjct: 106117927 ttattcagccccctaggtttccacagctgtaggtgagccttacatttccatccttaccac 106117868
Query: 701 ccacaccaccctggagcactctgattgtgccttcatggtagacaatgaggccatctatga 760
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106117867 ccacaccaccgtggagaactctgattgtgccttcatggtagacaatgaggccatctatga 106117808
Query: 761 catctgtcgtagaaaccttgatattgaacgcccaacctacactaatctgaaccgccttat 820
||||| || |||||||||||||||||| | |||| ||||||||| |||||||| ||| ||
Sbjct: 106117807 catctttcatagaaaccttgatattgagcacccatcctacactactctgaaccacctcat 106117748
Query: 821 tagccaaattgtgtcctccatcactgcttccctgaggtttgatggggccctgaatgttga 880
|||||| ||||||||||||||||||||||| |||||||||||||| ||| ||||||||||
Sbjct: 106117747 tagccagattgtgtcctccatcactgcttctctgaggtttgatggagccatgaatgttga 106117688
Query: 881 tctgacagaattccagaccaacctggtgccctacccccgcatccatttccctctggccac 940
|||||||||||||||||||| | || |||||||| || ||||||||||||||||||||||
Sbjct: 106117687 tctgacagaattccagaccagcttgttgccctactcctgcatccatttccctctggccac 106117628
Query: 941 atacgcccccgtcatctctgctgaaaaagcctaccatgaacagcttactgtagcagagat 1000
||| ||||| |||||||||||||| |||| | |||||||||||||||
Sbjct: 106117627 atatgcccctgtcatctctgctgagaaagtc--------------tactgtagcagagat 106117582
Query: 1001 cactaatgcttgctttgagccagccaaccagatggtgaaatgtgaccctcgccatggtaa 1060
||| |||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 106117581 caccaatgcttgctttaggccagccaaccagatggtgaaatttgatcctcgccatggtaa 106117522
Query: 1061 atacatggcctgctgcctgttgtaccgtggtgacttggttcccaaagacgtcaatgccgc 1120
|||||||||||||||||||||||||||||| | | ||||||| |||| ||||||||| |
Sbjct: 106117521 atacatggcctgctgcctgttgtaccgtggcgtcacggttcccgaagaagtcaatgccac 106117462
Query: 1121 cattgcccccctccaaaccaagcgcaacatccagtttgtggactggtgccccactggctt 1180
||||||| || | | ||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 106117461 cattgccaccataaagaccaagcacagcattcagtttgtggactggtgccccaatggctt 106117402
Query: 1181 -caaggtggcatttatta-cagacccccactgtggtccctggtgaagaccctggcaaa-- 1236
||| ||||||| || | ||| | ||||||||||||||| ||| ||| ||||||||
Sbjct: 106117401 aaaagctggcattgataaccagccacccactgtggtcccttgtggaga-tctggcaaaag 106117343
Query: 1237 tacagcgggcagtgtgcatgctgagca 1263
||||| |||| |||||| |||||||||
Sbjct: 106117342 tacagagggctgtgtgcgtgctgagca 106117316
Score = 1176 bits (593), Expect = 0.0
Identities = 1070/1227 (87%), Gaps = 44/1227 (3%)
Strand = Plus / Minus
Query: 43 ctcacctcgactcttagcttgtcggggacggtaaccaggactcggtgtctactcctgttg 102
||||||| ||||||||||||||| | || |||||||||||||| ||||||||||||||||
Sbjct: 105966938 ctcaccttgactcttagcttgtcagtgatggtaaccaggactcagtgtctactcctgttg 105966879
Query: 103 cctgcgcttgctgaccggtaaccaccatgcgtgagtgcatctccatccacgttggccaag 162
||||| ||||||||| || | ||| || ||||||||||||| |||||| |||||||||
Sbjct: 105966878 cctgcacttgctgactggcagccatggtgtgtgagtgcatctctatccacattggccaag 105966819
Query: 163 ctggtgtccagatcggcaatgcctgctgggagctctactgcctggaacacggcatccagc 222
|||||||||||||| ||| ||||||||||||||| ||||||||||||||
Sbjct: 105966818 ctggtgtccagatcagcagtgcctgctgggagctatactgcctggaaca----------- 105966770
Query: 223 ccgatggccagatgccgagtgacaagaccattgggggaggagatgactccttcaacacct 282
||| || ||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 105966769 ----------gataccaagtaacaagacccctgggggaggagatgactccttcaacacct 105966720
Query: 283 tcttca-gtgagacaggcgctggcaagcatgtgcccagggcagtgtttgtagacctggaa 341
|||| | |||||| ||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 105966719 tctttaagtgagataggagctggcaagcatgtgcccagggcag-gtttgtagacctggaa 105966661
Query: 342 cccacagtcattgatgaagttcgcactggcacctaccgccagctcttccaccctgagcag 401
||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||
Sbjct: 105966660 cccacagtcattgatgaagttagcactggcacctactgcctgctcttccaccctgagcag 105966601
Query: 402 ctcatcacaggcaaggaagatgctgccaataactatgcccgaggtcactacaccattggc 461
|||||||||||||| |||||||||||||||||||| || || ||||||| ||||||||
Sbjct: 105966600 ctcatcacaggcaaaaaagatgctgccaataactattccagaagtcactatcccattggc 105966541
Query: 462 aaggagatcattgacctcgtcttggaccgaattcggaaactggctgaccagtgcacaggt 521
|||||||||||||||||| ||||||||| | ||| ||| |||||||||||||||||||||
Sbjct: 105966540 aaggagatcattgacctcatcttggacccagttcagaa-ctggctgaccagtgcacaggt 105966482
Query: 522 cttcagggcttcttggttttccacagctttggcgggggaa-cgggttctgggttcacctc 580
|||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||
Sbjct: 105966481 cttcagggcttcttggttttccacagctttggttggggaaactggttctgggttcacctc 105966422
Query: 581 cctgctgatggaacgtctctctgtcgattatggcaagaagtccaagctggagttctccat 640
||||||||||||||| |||||||||||||||| || |||||||||||||| ||||||||
Sbjct: 105966421 tctgctgatggaacgtttctctgtcgattatgggaataagtccaagctggaattctccat 105966362
Query: 641 ttacccagccccccaggtttccacagctgtagttgagccctacaactccatcctcaccac 700
||| |||||||| |||||||||||||||||| |||||| |||| |||||||| |||||
Sbjct: 105966361 ttattcagccccctaggtttccacagctgtaggtgagccttacatttccatccttaccac 105966302
Query: 701 ccacaccaccctggagcactctgattgtgccttcatggtagacaatgaggccatctatga 760
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105966301 ccacaccaccgtggagaactctgattgtgccttcatggtagacaatgaggccatctatga 105966242
Query: 761 catctgtcgtagaaaccttgatattgaacgcccaacctacactaatctgaaccgccttat 820
||||| || |||||||||||||||||| | |||| ||||||||| |||||||| ||| ||
Sbjct: 105966241 catctttcatagaaaccttgatattgagcacccatcctacactactctgaaccacctcat 105966182
Query: 821 tagccaaattgtgtcctccatcactgcttccctgaggtttgatggggccctgaatgttga 880
|||||| ||||||||||||||||||||||| |||||||||||||| ||| ||||||||||
Sbjct: 105966181 tagccagattgtgtcctccatcactgcttctctgaggtttgatggagccatgaatgttga 105966122
Query: 881 tctgacagaattccagaccaacctggtgccctacccccgcatccatttccctctggccac 940
|||||||||||||||||||| | || |||||||| || ||||||||||||||||||||||
Sbjct: 105966121 tctgacagaattccagaccagcttgttgccctactcctgcatccatttccctctggccac 105966062
Query: 941 atacgcccccgtcatctctgctgaaaaagcctaccatgaacagcttactgtagcagagat 1000
||| ||||| |||||||||||||| |||| | |||||||||||||||
Sbjct: 105966061 atatgcccctgtcatctctgctgagaaagtc--------------tactgtagcagagat 105966016
Query: 1001 cactaatgcttgctttgagccagccaaccagatggtgaaatgtgaccctcgccatggtaa 1060
| | |||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 105966015 ccccaatgcttgctttaggccagccaaccagatggtgaaatttgatcctcgccatggtaa 105965956
Query: 1061 atacatggcctgctgcctgttgtaccgtggtgacttggttcccaaagacgtcaatgccgc 1120
|||||||||||||||||||||||||||||| | | ||||||| |||| ||||||||| |
Sbjct: 105965955 atacatggcctgctgcctgttgtaccgtggcgtcacggttcccgaagaagtcaatgccac 105965896
Query: 1121 cattgcccccctccaaaccaagcgcaacatccagtttgtggactggtgccccactggctt 1180
||||||| || | | ||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 105965895 cattgccaccataaagaccaagcacagcattcagtttgtggactggtgccccaatggctt 105965836
Query: 1181 -caaggtggcatttatta-cagacccccactgtggtccctggtgaagaccctggcaaa-- 1236
||| ||||||| || | ||| | ||||||||||||||| ||| ||| ||||||||
Sbjct: 105965835 aaaagctggcattgataaccagccacccactgtggtcccttgtggaga-tctggcaaaag 105965777
Query: 1237 tacagcgggcagtgtgcatgctgagca 1263
||||| |||| |||||| |||||||||
Sbjct: 105965776 tacagagggctgtgtgcgtgctgagca 105965750
>Sscrofa_Chr03
|| Length = 144787322
Score = 835 bits (421), Expect = 0.0
Identities = 800/922 (86%), Gaps = 17/922 (1%)
Strand = Plus / Plus
Query: 128 catgcgtgagtgcatctccatccacgttggccaagctggtgtccagatcggcaatgcctg 187
||||| |||||||||| |||||||||||||||| ||| ||||||||||| ||| ||||||
Sbjct: 49835567 catgcttgagtgcatccccatccacgttggccaggctagtgtccagatcagcagtgcctg 49835626
Query: 188 ctgggagctctactgcctggaacacggcatccagcccgatggccagatgccgagtgacaa 247
|||||| ||| ||||||||||||| ||||||||| ||| |||||||||| ||||||||
Sbjct: 49835627 ttgggagttctcctgcctggaacacagcatccagcgtgatagccagatgccaagtgacaa 49835686
Query: 248 gaccattgggggaggagatgactccttcaacaccttcttcagtgagacaggcgctggcaa 307
| ||||||| ||||||||||||||||| ||||||||| |||| |||||||
Sbjct: 49835687 gtccattgg---aggagatgactccttcagcaccttcttgagtg---------ctggcaa 49835734
Query: 308 gcatgtgcccagggcagtgtttgtagacctggaacccacagtcattgatgaagttcgcac 367
| ||||||||||||||||| || ||||||||||| || |||||||||| ||| ||||
Sbjct: 49835735 ac--gtgcccagggcagtgttagtcaacctggaaccctcaatcattgatgacgtttgcac 49835792
Query: 368 tggcacctaccgccagctcttccaccctgagcagctcatcacaggcaaggaagatgctgc 427
|||||||||| |||||||| |||||| |||||| |||||||||||||||||||||| | |
Sbjct: 49835793 tggcacctac-gccagctcctccaccgtgagcatctcatcacaggcaaggaagatggtac 49835851
Query: 428 caataactatgcccgaggtcactacaccattggcaaggagatcattgacctcgtcttgga 487
| ||||| | |||| |||||| |||||||||| | ||||||||||||| ||||||||
Sbjct: 49835852 cgataaccacgccccgggtcaccacaccattggtactgagatcattgaccgtgtcttgga 49835911
Query: 488 ccgaattcggaaactggctgaccagtgcacaggtcttcagggcttcttggttttccacag 547
|| | | ||| ||||||||| ||||||| | || |||||||||||||||||||||||
Sbjct: 49835912 cccagtgtagaagctggctgactggtgcacatgcctccagggcttcttggttttccacag 49835971
Query: 548 ctttggcgggggaacgggttctgggttcacctccctgctgatggaacgtctctctgtcga 607
|| ||| |||||||| | |||||||||||||| |||||| |||| |||||||||||||||
Sbjct: 49835972 ctctggtgggggaactgattctgggttcaccttcctgcttatgggacgtctctctgtcga 49836031
Query: 608 ttatggcaagaagtccaagctggagttctccatttacccagccccccaggtttccacagc 667
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||
Sbjct: 49836032 ttatggcaagaagtccaagctggaggtctccatttacccagccccccaggtttgcactgc 49836091
Query: 668 tgtagttgagccctacaactccatcctcaccacccacaccaccctggagcactctgattg 727
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 49836092 tgtagttgagccctacaactccatcctctccacccacaccacccaggagcactctgattg 49836151
Query: 728 tgccttcatggtagacaatgaggccatctatgacatctgtcgtagaaaccttgatattga 787
|||||||||||||| | | || ||||||||||||||||| ||||||| | ||||||||
Sbjct: 49836152 tgccttcatggtaggccacaagtccatctatgacatctgtggtagaaaacacgatattga 49836211
Query: 788 acgcccaacctacactaatctgaaccgccttattagccaaattgtgtcctccatcactgc 847
||||||||||||||| |||||||| | | ||||| | ||||||||||||||||||||
Sbjct: 49836212 gcgcccaacctacactcctctgaacctcgtcattag-ctgattgtgtcctccatcactgc 49836270
Query: 848 ttccctgaggtttgatggggccctgaatgttgatctgacagaattccagaccaacctggt 907
||||||| |||| | ||| |||||||| |||||||||||||||| |||||||| | || |
Sbjct: 49836271 ttccctggggttgggtggagccctgaacgttgatctgacagaatgccagaccaccttgat 49836330
Query: 908 gccctacccccgcatccatttccctctggccacatacgcccccgtcatctctgctgaaaa 967
||||| | | |||||||||||||||| |||| || | ||| |||||||||||||| ||
Sbjct: 49836331 gccctgtcgctgcatccatttccctctttccactta-ggccctgtcatctctgctgagaa 49836389
Query: 968 agcctaccatgaacagcttactgtagcagagatcactaatgcttgctttgagccagccaa 1027
||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||
Sbjct: 49836390 agcctaccatgaacagctttctgtagcagagatcactaatgcttggttagagccagccaa 49836449
Query: 1028 ccagatggtgaaatgtgaccct 1049
|||||||||||| | |||||||
Sbjct: 49836450 ccagatggtgaagtatgaccct 49836471
Score = 769 bits (388), Expect = 0.0
Identities = 589/648 (90%), Gaps = 6/648 (0%)
Strand = Plus / Plus
Query: 621 tccaagctggagttctccatttacccagcccc-ccaggtttccacagctgtagttgagcc 679
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 132554009 tccaagctggagctctccatttacccagcccctccaggtttccacagctgtagttgagcc 132554068
Query: 680 ctacaactccatcctcaccacccacaccaccctggagcactctgattgtgccttcatggt 739
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 132554069 ctacaactccatcctcaccacccacaccaccctggagcactcaggttgtgccttcatggt 132554128
Query: 740 agacaatgaggccatctatgacatctgtcgtagaaaccttgatattgaacgcccaaccta 799
|| ||| |||||| ||| ||||| ||||||||||||||| |||||||| ||||||||||
Sbjct: 132554129 aggcaacgaggccgtctctgacacctgtcgtagaaacctcgatattgagcgcccaacctg 132554188
Query: 800 cactaatctgaaccgccttattagccaaattgtgtcctccatcactgcttccctgaggtt 859
|||||||| |||||| ||||| ||||| ||||||||||||||| ||||||||||||||||
Sbjct: 132554189 cactaatccgaaccgtcttatcagccagattgtgtcctccatcgctgcttccctgaggtt 132554248
Query: 860 tgatggggccctgaatgttgatctgacagaattccagaccaacctggtgccctacccccg 919
||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 132554249 tgatggggctttgaatgtggatctcacagaattccagaccaacctggtgccctacccccg 132554308
Query: 920 catccatttccctctggccacatacgcccccgtcatctctgctgaaaaagcctaccatga 979
|||||| ||||||||||||||| | ||||| ||||||||||||| | |||||||||| ||
Sbjct: 132554309 catccacttccctctggccacacatgcccctgtcatctctgctg-agaagcctaccagga 132554367
Query: 980 acagcttactgtagcagagatcactaatgcttgctttgagccagccaaccagatggtgaa 1039
||||||| ||||||||||| || |||||||| |||| | ||||||||||||||||||||
Sbjct: 132554368 acagctttctgtagcagaggtcgctaatgctggcttcaaaccagccaaccagatggtgaa 132554427
Query: 1040 atgtgaccctcgccatggtaaatacatggcctgctgcctgttgtaccgtggtgacttggt 1099
||| |||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||
Sbjct: 132554428 atgcaaccctcgccatggtaaatccatggcctgctgcctgttgtaccatggtgacgtggt 132554487
Query: 1100 tcccaaagacgtcaatgccgccattgcccccctccaaaccaagcgcaacatccagtttgt 1159
|||||||||||||||||||||||| ||| || || | |||||||||| ||||||||||||
Sbjct: 132554488 tcccaaagacgtcaatgccgccatcgccaccatcaagaccaagcgcagcatccagtttgt 132554547
Query: 1160 ggactggtgccccactggcttcaagg-tggcatttatta-cag-acccccactgtggtcc 1216
|||||||||||||||||||||||||| ||||||| |||| ||| ||||||||||||||
Sbjct: 132554548 ggactggtgccccactggcttcaaggttggcattaattaccagcccccccactgtggtct 132554607
Query: 1217 ctggtgaagaccctggcaaa-tacagcgggcagtgtgcatgctgagca 1263
|||| | ||||| | |||| |||||||||| ||||||||||||||||
Sbjct: 132554608 ctggcggagacctggccaaagtacagcgggctgtgtgcatgctgagca 132554655
Score = 67.9 bits (34), Expect = 1e-08
Identities = 71/82 (86%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 1148 catccagtttgtggactggtgccccactggcttcaaggtggcatttatta-cagaccccc 1206
|||||||||||||||||||| ||| ||||||||||| |||||| |||| ||| |||
Sbjct: 49836878 catccagtttgtggactggtaccctgctggcttcaagtcggcattaattaccagcttccc 49836937
Query: 1207 actgtggtccctggtgaagacc 1228
|||||||||||||||| |||||
Sbjct: 49836938 actgtggtccctggtggagacc 49836959
>Sscrofa_Chr11
|| Length = 87690581
Score = 739 bits (373), Expect = 0.0
Identities = 1007/1195 (84%), Gaps = 45/1195 (3%)
Strand = Plus / Plus
Query: 33 gagtgcgttactcacctcgactcttagcttgtcggggacggtaaccaggactcggtgtct 92
|||||| ||||||||||| |||||||||||||| | || | ||||||||||| ||| |||
Sbjct: 32577490 gagtgccttactcacctcaactcttagcttgtcagcgatgataaccaggacttggtatct 32577549
Query: 93 actcctgttgcctgcgcttgctgaccggtaaccaccatgcgtgagtgcatctccatccac 152
|||||| |||| |||||||||| | ||| |||||||| ||| |||||||||||||||
Sbjct: 32577550 gctcctgctgccctcgcttgctgatcagtagccaccatgtgtg--tgcatctccatccac 32577607
Query: 153 gttggccaagctggtgtcca-gatcggcaatgcctgctgggagctctactgcctggaaca 211
||||||| ||||| ||| || | |||||| | |||||| |||||| |||| ||
Sbjct: 32577608 attggccacattggtgcccacgactgacaatgcatcctgggaactctaccgccttcaat- 32577666
Query: 212 cggcatccagcccgatggccagatgccgagtgacaagaccattgggggaggagatgactc 271
||| |||||||||||| |||||||||||||||| |||| ||||||||||
Sbjct: 32577667 -ggc-----------tggccagatgccaagtgacaagaccattgagggaagagatgactc 32577714
Query: 272 cttcaacaccttcttcagtgaga-caggcg-ctggcaagcatgtgcccagggcagtgttt 329
|||||| ||||| |||||||||| ||||| ||| | ||||||| |||||||||||||||
Sbjct: 32577715 cttcaatacctttttcagtgagaacaggcaactgaccagcatgtacccagggcagtgttt 32577774
Query: 330 gtagacctggaacccacagtcattgatgaagttcgcact--ggcacctaccgccagctct 387
||||| ||| |||||| | ||||||||||||||| |||| ||||||||| ||||||||
Sbjct: 32577775 gtagatctgaaacccagaatcattgatgaagttcacactttggcacctactcccagctct 32577834
Query: 388 tccaccctgagcagctcatcacaggcaaggaagatgctgccaataactatgcccgaggtc 447
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 32577835 tccaccctgagcagctcatcacaggcaaggaagatgctgtcaataactatgcctgaggtc 32577894
Query: 448 actacaccattggcaaggagatcattgacctcgtcttggaccgaattcggaaactggctg 507
||| |||||||||||||||||||||||| || || |||||| ||||| ||||||||||||
Sbjct: 32577895 acttcaccattggcaaggagatcattgatcttgtgttggactgaattgggaaactggctg 32577954
Query: 508 accagtgcacaggtcttcagggcttcttggttttccacagctttggcgggggaacgggtt 567
|| |||||| |||||||||| | ||||||| |||| ||||||| | |||| ||| |||
Sbjct: 32577955 acaagtgcataggtcttcagtgtttcttggctttc-acagctt--gtggggaaactggt- 32578010
Query: 568 ctgggttcacctccctgctgatggaacgtctctctgtcgattatggcaagaagtccaagc 627
||||||| |||||||||| |||| ||| ||||| |||| |||| ||||| || |||| ||
Sbjct: 32578011 ctgggtttacctccctgcagatg-aacatctct-tgtcaatta-ggcaaaaa-tcca-gc 32578065
Query: 628 tggagttctccatttacccagccccccaggtttccacagctgtagttgagccctacaact 687
|||| ||||| || ||||||||||| ||||||||||||||||| || ||||||| ||||
Sbjct: 32578066 tggaattctctgtt-acccagccccc-aggtttccacagctgtaattaagccctataact 32578123
Query: 688 ccatcctcaccacccacaccaccctggagcactctgattgtgccttcatggtagacaatg 747
||||||||||| |||||||||||||||||||||| ||||| ||||||||||
Sbjct: 32578124 ccatcctcacc---------accctggagcactctgattgtgtgttcattgtagacaatg 32578174
Query: 748 aggccatctatgacatctgtcgtagaaaccttgatattgaacgcccaacctacactaatc 807
||||||||| ||||||||||| ||||||||| || |||| | |||| |||||||||||
Sbjct: 32578175 aggccatctgtgacatctgtcatagaaacctcaattttgagcacccagtctacactaatc 32578234
Query: 808 tgaaccgccttattagccaaattgtgtcctccatcactgcttccctgaggtttgatgggg 867
| |||| |||||||||||| | ||||||||||||||||||||| ||||| |||| | | |
Sbjct: 32578235 ttaaccaccttattagccagactgtgtcctccatcactgcttctctgagctttggt-gag 32578293
Query: 868 ccctgaatgttgatctgacagaattccagaccaacctggtgccctacccccgcatccatt 927
|||||||||||| |||||||||||| ||||| | || ||||||| |||| ||||||||
Sbjct: 32578294 acctgaatgttgacgtgacagaattccggaccagcttgttgccctatccccacatccatt 32578353
Query: 928 tccctctggccacatacgcccccgtcatctctgctgaaaaagcctaccatgaacagctta 987
||||| ||| |||||| ||||| |||||||||||||||||| ||||||||| |||||||
Sbjct: 32578354 tccctgtggtcacatatgcccctgtcatctctgctgaaaaa-cctaccatggacagcttg 32578412
Query: 988 ctgtagcagagatcactaatgcttgctttgagccagccaaccagatggtgaaatgtgacc 1047
|| ||||||| |||||||||||||| |||||||||||||||||||| |||||||||| ||
Sbjct: 32578413 ctatagcagaaatcactaatgcttgttttgagccagccaaccagatagtgaaatgtggcc 32578472
Query: 1048 ctcgccatggtaaatacatggcctgctgcctgttgtaccgtggtgacttggttcccaaag 1107
||| ||| || |||||||||| |||| |||| |||| |||| | | |||| |||||
Sbjct: 32578473 ctcacca-agtgaatacatggcttgctacctgctgtatagtggcaatgttgttctcaaag 32578531
Query: 1108 acgtcaatgccgccattgcccccctccaaaccaagcgcaacatccagtttgtggactggt 1167
|| ||||||| ||||||||| || || | ||||| |||| ||||||||||||||| ||||
Sbjct: 32578532 acatcaatgctgccattgccaccatcaagaccaatcgcagcatccagtttgtggaatggt 32578591
Query: 1168 gccccactggcttc-aaggtggcatttatta-cagacccccactgtggtccctgg 1220
| |||||||||||| ||| ||||||| |||| ||| | ||| |||||||||||||
Sbjct: 32578592 gacccactggcttcaaagttggcattaattaccagcctccccctgtggtccctgg 32578646
>Sscrofa_Chr15
|| Length = 157681621
Score = 511 bits (258), Expect = e-142
Identities = 576/682 (84%)
Strand = Plus / Minus
Query: 505 ctgaccagtgcacaggtcttcagggcttcttggttttccacagctttggcgggggaacgg 564
|||| ||||||||||| |||||||||||| |||| |||||||||||||| || || || |
Sbjct: 134326171 ctgatcagtgcacaggacttcagggcttcctggtgttccacagctttggaggcggcaccg 134326112
Query: 565 gttctgggttcacctccctgctgatggaacgtctctctgtcgattatggcaagaagtcca 624
| ||||| |||||||| || |||||||| | |||||||| || || |||||||| ||||
Sbjct: 134326111 gctctggcttcacctcgctcctgatggagaggctctctgttgactacggcaagaaatcca 134326052
Query: 625 agctggagttctccatttacccagccccccaggtttccacagctgtagttgagccctaca 684
|||| ||||||||||| ||||| ||||| ||||| |||||||| || || ||||||||||
Sbjct: 134326051 agctcgagttctccatctaccccgccccgcaggtgtccacagccgtggtcgagccctaca 134325992
Query: 685 actccatcctcaccacccacaccaccctggagcactctgattgtgccttcatggtagaca 744
|||||||||| |||||||||||||||||||||||||| || |||||||||||||| ||||
Sbjct: 134325991 actccatcctgaccacccacaccaccctggagcactcagactgtgccttcatggtggaca 134325932
Query: 745 atgaggccatctatgacatctgtcgtagaaaccttgatattgaacgcccaacctacacta 804
| || ||||| || |||||||| || | ||||| || || || || || |||||||| |
Sbjct: 134325931 acgaagccatttacgacatctgccgccgcaacctggacatcgagcgtcccacctacacca 134325872
Query: 805 atctgaaccgccttattagccaaattgtgtcctccatcactgcttccctgaggtttgatg 864
| || |||||||| || |||||||| || ||||||||||| || |||||| | ||||| |
Sbjct: 134325871 acctcaaccgcctcatcagccaaatcgtctcctccatcacagcgtccctgcgctttgacg 134325812
Query: 865 gggccctgaatgttgatctgacagaattccagaccaacctggtgccctacccccgcatcc 924
||||||| || || || ||||| || |||||||||||||||||||||||||| |||||||
Sbjct: 134325811 gggccctcaacgtggacctgacggagttccagaccaacctggtgccctaccctcgcatcc 134325752
Query: 925 atttccctctggccacatacgcccccgtcatctctgctgaaaaagcctaccatgaacagc 984
| ||||| |||||||| || || || ||||||||||| || || |||||||| || ||||
Sbjct: 134325751 acttcccgctggccacctatgcaccagtcatctctgcagagaaggcctaccacgagcagc 134325692
Query: 985 ttactgtagcagagatcactaatgcttgctttgagccagccaaccagatggtgaaatgtg 1044
| | || ||||||||||| || || ||||| ||||| ||||||||||||||||| ||||
Sbjct: 134325691 tgtcggtggcagagatcaccaacgcctgcttcgagcctgccaaccagatggtgaagtgtg 134325632
Query: 1045 accctcgccatggtaaatacatggcctgctgcctgttgtaccgtggtgacttggttccca 1104
| || || ||||| || |||||||||||||||||| ||||||| || ||| |||| ||||
Sbjct: 134325631 atccccgtcatggcaagtacatggcctgctgcctgctgtaccgaggagacgtggtgccca 134325572
Query: 1105 aagacgtcaatgccgccattgcccccctccaaaccaagcgcaacatccagtttgtggact 1164
| || |||||||||||||| || || || | |||||||||| ||||||||||||||||
Sbjct: 134325571 aggatgtcaatgccgccatcgctgccatcaagaccaagcgcagtatccagtttgtggact 134325512
Query: 1165 ggtgccccactggcttcaaggt 1186
|||||||||| |||||||||||
Sbjct: 134325511 ggtgccccacgggcttcaaggt 134325490
Score = 500 bits (252), Expect = e-138
Identities = 576/684 (84%)
Strand = Plus / Plus
Query: 503 ggctgaccagtgcacaggtcttcagggcttcttggttttccacagctttggcgggggaac 562
|||||||||||||||||| || || || ||| | | |||||||||||||| || || ||
Sbjct: 134346378 ggctgaccagtgcacaggactccaaggattcctcatcttccacagctttggaggcggcac 134346437
Query: 563 gggttctgggttcacctccctgctgatggaacgtctctctgtcgattatggcaagaagtc 622
|| ||||| |||||||| || |||||||| || |||||||| || || |||||||| ||
Sbjct: 134346438 cggctctggcttcacctcgctcctgatggagcggctctctgttgactacggcaagaaatc 134346497
Query: 623 caagctggagttctccatttacccagccccccaggtttccacagctgtagttgagcccta 682
|||||| ||||||||||| ||||| ||||| ||||| |||||||| || || ||||||||
Sbjct: 134346498 caagctcgagttctccatctaccctgccccgcaggtgtccacagccgtggtcgagcccta 134346557
Query: 683 caactccatcctcaccacccacaccaccctggagcactctgattgtgccttcatggtaga 742
|||||||||||| |||||||||||||||||||||||||| || |||||||||||||| ||
Sbjct: 134346558 caactccatcctgaccacccacaccaccctggagcactcagactgtgccttcatggtgga 134346617
Query: 743 caatgaggccatctatgacatctgtcgtagaaaccttgatattgaacgcccaacctacac 802
||| || |||||||| |||||||| || | ||||| || || || || || ||||||||
Sbjct: 134346618 caacgaagccatctacgacatctgccgccgcaacctggacatcgagcgtcccacctacac 134346677
Query: 803 taatctgaaccgccttattagccaaattgtgtcctccatcactgcttccctgaggtttga 862
|| || |||||||| || ||||||| || ||||||||||| || |||||| | |||||
Sbjct: 134346678 caacctcaaccgcctcatcggccaaatcgtctcctccatcacagcgtccctgcgctttga 134346737
Query: 863 tggggccctgaatgttgatctgacagaattccagaccaacctggtgccctacccccgcat 922
||||||||| || || || ||||| || |||||||||||||||||||||||||| |||||
Sbjct: 134346738 tggggccctcaacgtggacctgacggagttccagaccaacctggtgccctaccctcgcat 134346797
Query: 923 ccatttccctctggccacatacgcccccgtcatctctgctgaaaaagcctaccatgaaca 982
||| ||||| |||||||| || || || ||||||||||| || || |||||||| || ||
Sbjct: 134346798 ccacttccccctggccacctatgcaccagtcatctctgcagagaaggcctaccacgagca 134346857
Query: 983 gcttactgtagcagagatcactaatgcttgctttgagccagccaaccagatggtgaaatg 1042
||| | || ||||||||||| || || ||||| ||||| ||||||||||||||||| ||
Sbjct: 134346858 gctgtcggtggcagagatcaccaacgcctgcttcgagcctgccaaccagatggtgaagtg 134346917
Query: 1043 tgaccctcgccatggtaaatacatggcctgctgcctgttgtaccgtggtgacttggttcc 1102
||| || || ||||| || |||||||||||||||||| ||||||| || ||| |||| ||
Sbjct: 134346918 tgatccccgtcatggcaagtacatggcctgctgcctgctgtaccgaggagacgtggtgcc 134346977
Query: 1103 caaagacgtcaatgccgccattgcccccctccaaaccaagcgcaacatccagtttgtgga 1162
||| || |||||||||||||| || || || | |||||||||| ||||||||||||||
Sbjct: 134346978 caaggatgtcaatgccgccatcgctgccatcaagaccaagcgcagtatccagtttgtgga 134347037
Query: 1163 ctggtgccccactggcttcaaggt 1186
|||||||||||| |||||||||||
Sbjct: 134347038 ctggtgccccacgggcttcaaggt 134347061
Score = 208 bits (105), Expect = 5e-51
Identities = 177/201 (88%)
Strand = Plus / Minus
Query: 131 gcgtgagtgcatctccatccacgttggccaagctggtgtccagatcggcaatgcctgctg 190
|||||| |||||||| |||| ||||| || || ||||||||||| ||||||||||||||
Sbjct: 134327107 gcgtgaatgcatctcagtccatgttgggcaggcaggtgtccagatgggcaatgcctgctg 134327048
Query: 191 ggagctctactgcctggaacacggcatccagcccgatggccagatgccgagtgacaagac 250
|||||||||||| |||||||| || |||||||| ||||| |||||||| |||||||||||
Sbjct: 134327047 ggagctctactgtctggaacatgggatccagccggatgggcagatgcccagtgacaagac 134326988
Query: 251 cattgggggaggagatgactccttcaacaccttcttcagtgagacaggcgctggcaagca 310
|||||| |||||||| |||||||||| |||||||||| |||| || || ||||| |||||
Sbjct: 134326987 cattggtggaggagacgactccttcaccaccttcttctgtgaaactggtgctggaaagca 134326928
Query: 311 tgtgcccagggcagtgtttgt 331
||||||| ||||||| |||||
Sbjct: 134326927 tgtgccccgggcagtttttgt 134326907
Score = 184 bits (93), Expect = 8e-44
Identities = 174/201 (86%)
Strand = Plus / Plus
Query: 131 gcgtgagtgcatctccatccacgttggccaagctggtgtccagatcggcaatgcctgctg 190
||||||||||||||| ||||||| ||||| || ||||| ||||| ||||||||||||||
Sbjct: 134344993 gcgtgagtgcatctcagtccacgtgggccaggccggtgtgcagattggcaatgcctgctg 134345052
Query: 191 ggagctctactgcctggaacacggcatccagcccgatggccagatgccgagtgacaagac 250
||||||||||||| ||||||| || |||||||| ||||| |||||||| || ||||||||
Sbjct: 134345053 ggagctctactgcttggaacatgggatccagccagatgggcagatgcccagcgacaagac 134345112
Query: 251 cattgggggaggagatgactccttcaacaccttcttcagtgagacaggcgctggcaagca 310
||| || ||||| || ||||||||||| || ||||| || || || ||||| || |||||
Sbjct: 134345113 catcggaggaggggacgactccttcaatacgttctttagcgaaactggcgccggaaagca 134345172
Query: 311 tgtgcccagggcagtgtttgt 331
||||||| |||||||||||||
Sbjct: 134345173 tgtgccccgggcagtgtttgt 134345193
Score = 172 bits (87), Expect = 3e-40
Identities = 135/151 (89%)
Strand = Plus / Plus
Query: 354 gatgaagttcgcactggcacctaccgccagctcttccaccctgagcagctcatcacaggc 413
||||| ||||| || ||||| ||||||||||||||||| || |||||||||||||| ||
Sbjct: 134345531 gatgaggttcggacgggcacgtaccgccagctcttccatccggagcagctcatcactggg 134345590
Query: 414 aaggaagatgctgccaataactatgcccgaggtcactacaccattggcaaggagatcatt 473
||||||||||| |||||||||||||||||||| |||||||||||||| |||||| |||||
Sbjct: 134345591 aaggaagatgcggccaataactatgcccgaggccactacaccattggaaaggagctcatt 134345650
Query: 474 gacctcgtcttggaccgaattcggaaactgg 504
||||| || |||||||||||||||| ||||
Sbjct: 134345651 gacctggtgctggaccgaattcggaagctgg 134345681
Score = 107 bits (54), Expect = 1e-20
Identities = 96/110 (87%)
Strand = Plus / Minus
Query: 368 tggcacctaccgccagctcttccaccctgagcagctcatcacaggcaaggaagatgctgc 427
|||| ||||||| |||||||||||||| |||||||||||||| || || || ||||| ||
Sbjct: 134326557 tggcccctaccggcagctcttccacccagagcagctcatcactgggaaagaggatgcggc 134326498
Query: 428 caataactatgcccgaggtcactacaccattggcaaggagatcattgacc 477
|| ||||||||||| |||||||||||||| |||||||| || |||||||
Sbjct: 134326497 taacaactatgcccgtggtcactacaccatcggcaaggaaattattgacc 134326448
>Sscrofa_Chr14
|| Length = 153851969
Score = 436 bits (220), Expect = e-119
Identities = 565/680 (83%)
Strand = Plus / Minus
Query: 507 gaccagtgcacaggtcttcagggcttcttggttttccacagctttggcgggggaacgggt 566
|||| |||||| || || ||||||||| | | |||||||||||||| || || || ||
Sbjct: 54046279 gacctgtgcacggggctgcagggcttcctcatcttccacagctttgggggcggcaccggc 54046220
Query: 567 tctgggttcacctccctgctgatggaacgtctctctgtcgattatggcaagaagtccaag 626
|| || ||| | || ||||| ||||| || ||||| || || || |||||||||||||||
Sbjct: 54046219 tcgggcttcgcatctctgctcatggagcggctctcggtggactacggcaagaagtccaag 54046160
Query: 627 ctggagttctccatttacccagccccccaggtttccacagctgtagttgagccctacaac 686
||||||||| |||||||||| ||||||||||| ||||| || || || ||||||||||||
Sbjct: 54046159 ctggagttcgccatttacccggccccccaggtctccacggccgtggtggagccctacaac 54046100
Query: 687 tccatcctcaccacccacaccaccctggagcactctgattgtgccttcatggtagacaat 746
|||||||| ||||| ||||| |||||||||||||| || || ||||||||||| |||||
Sbjct: 54046099 tccatcctgaccacgcacacgaccctggagcactcggactgcgccttcatggtggacaac 54046040
Query: 747 gaggccatctatgacatctgtcgtagaaaccttgatattgaacgcccaacctacactaat 806
||||||||||| ||||||||||| | ||||| || || || || || |||||||| ||
Sbjct: 54046039 gaggccatctacgacatctgtcggcgcaacctggacatcgagcggcccacctacaccaac 54045980
Query: 807 ctgaaccgccttattagccaaattgtgtcctccatcactgcttccctgaggtttgatggg 866
|| || || || || | || || |||||||||||||| || |||||| | || || |||
Sbjct: 54045979 ctcaatcgtctgatcgggcagatcgtgtcctccatcacagcctccctgcgcttcgacggg 54045920
Query: 867 gccctgaatgttgatctgacagaattccagaccaacctggtgccctacccccgcatccat 926
||||| || || || ||||| || ||||||||||||||||| |||||||||||||||||
Sbjct: 54045919 gccctcaacgtggacctgacggagttccagaccaacctggtcccctacccccgcatccac 54045860
Query: 927 ttccctctggccacatacgcccccgtcatctctgctgaaaaagcctaccatgaacagctt 986
||||| |||||||| |||||||| |||||||| || || || |||||||| || |||||
Sbjct: 54045859 ttccccctggccacctacgccccggtcatctcggccgagaaggcctaccacgagcagctg 54045800
Query: 987 actgtagcagagatcactaatgcttgctttgagccagccaaccagatggtgaaatgtgac 1046
|||| || |||||||| || || ||||| ||||| |||||||||||||| || ||||||
Sbjct: 54045799 tctgtggccgagatcaccaacgcctgcttcgagccggccaaccagatggtcaagtgtgac 54045740
Query: 1047 cctcgccatggtaaatacatggcctgctgcctgttgtaccgtggtgacttggttcccaaa 1106
|||||||| || || ||||||||||||||| || ||||| | || ||| |||| ||||||
Sbjct: 54045739 cctcgccacggcaagtacatggcctgctgcatgctgtacaggggagacgtggtccccaaa 54045680
Query: 1107 gacgtcaatgccgccattgcccccctccaaaccaagcgcaacatccagtttgtggactgg 1166
|||||||| || ||||| ||| || || | |||||||||| |||||||||||||||||||
Sbjct: 54045679 gacgtcaacgcggccatcgccaccatcaagaccaagcgcaccatccagtttgtggactgg 54045620
Query: 1167 tgccccactggcttcaaggt 1186
||||| ||||| ||||||||
Sbjct: 54045619 tgcccgactgggttcaaggt 54045600
Score = 436 bits (220), Expect = e-119
Identities = 565/680 (83%)
Strand = Plus / Plus
Query: 507 gaccagtgcacaggtcttcagggcttcttggttttccacagctttggcgggggaacgggt 566
|||| |||||| || || ||||||||| | | |||||||||||||| || || || ||
Sbjct: 54217763 gacctgtgcacggggctgcagggcttcctcatcttccacagctttgggggcggcaccggc 54217822
Query: 567 tctgggttcacctccctgctgatggaacgtctctctgtcgattatggcaagaagtccaag 626
|| || ||| | || ||||| ||||| || ||||| || || || |||||||||||||||
Sbjct: 54217823 tcgggcttcgcatctctgctcatggagcggctctcggtggactacggcaagaagtccaag 54217882
Query: 627 ctggagttctccatttacccagccccccaggtttccacagctgtagttgagccctacaac 686
||||||||| |||||||||| ||||||||||| ||||| || || || ||||||||||||
Sbjct: 54217883 ctggagttcgccatttacccggccccccaggtctccacggccgtggtggagccctacaac 54217942
Query: 687 tccatcctcaccacccacaccaccctggagcactctgattgtgccttcatggtagacaat 746
|||||||| ||||| ||||| |||||||||||||| || || ||||||||||| |||||
Sbjct: 54217943 tccatcctgaccacgcacacgaccctggagcactcggactgcgccttcatggtggacaac 54218002
Query: 747 gaggccatctatgacatctgtcgtagaaaccttgatattgaacgcccaacctacactaat 806
||||||||||| ||||||||||| | ||||| || || || || || |||||||| ||
Sbjct: 54218003 gaggccatctacgacatctgtcggcgcaacctggacatcgagcggcccacctacaccaac 54218062
Query: 807 ctgaaccgccttattagccaaattgtgtcctccatcactgcttccctgaggtttgatggg 866
|| || || || || | || || |||||||||||||| || |||||| | || || |||
Sbjct: 54218063 ctcaatcgtctgatcgggcagatcgtgtcctccatcacagcctccctgcgcttcgacggg 54218122
Query: 867 gccctgaatgttgatctgacagaattccagaccaacctggtgccctacccccgcatccat 926
||||| || || || ||||| || ||||||||||||||||| |||||||||||||||||
Sbjct: 54218123 gccctcaacgtggacctgacggagttccagaccaacctggtcccctacccccgcatccac 54218182
Query: 927 ttccctctggccacatacgcccccgtcatctctgctgaaaaagcctaccatgaacagctt 986
||||| |||||||| |||||||| |||||||| || || || |||||||| || |||||
Sbjct: 54218183 ttccccctggccacctacgccccggtcatctcggccgagaaggcctaccacgagcagctg 54218242
Query: 987 actgtagcagagatcactaatgcttgctttgagccagccaaccagatggtgaaatgtgac 1046
|||| || |||||||| || || ||||| ||||| |||||||||||||| || ||||||
Sbjct: 54218243 tctgtggccgagatcaccaacgcctgcttcgagccggccaaccagatggtcaagtgtgac 54218302
Query: 1047 cctcgccatggtaaatacatggcctgctgcctgttgtaccgtggtgacttggttcccaaa 1106
|||||||| || || ||||||||||||||| || ||||| | || ||| |||| ||||||
Sbjct: 54218303 cctcgccacggcaagtacatggcctgctgcatgctgtacaggggagacgtggtccccaaa 54218362
Query: 1107 gacgtcaatgccgccattgcccccctccaaaccaagcgcaacatccagtttgtggactgg 1166
|||||||| || ||||| ||| || || | |||||||||| |||||||||||||||||||
Sbjct: 54218363 gacgtcaacgcggccatcgccaccatcaagaccaagcgcaccatccagtttgtggactgg 54218422
Query: 1167 tgccccactggcttcaaggt 1186
||||| ||||| ||||||||
Sbjct: 54218423 tgcccgactgggttcaaggt 54218442
Score = 182 bits (92), Expect = 3e-43
Identities = 182/212 (85%)
Strand = Plus / Minus
Query: 135 gagtgcatctccatccacgttggccaagctggtgtccagatcggcaatgcctgctgggag 194
||||||||||| |||||||| || || || || || ||||||||||||||||||||||||
Sbjct: 54047701 gagtgcatctctatccacgtggggcaggcaggggttcagatcggcaatgcctgctgggag 54047642
Query: 195 ctctactgcctggaacacggcatccagcccgatggccagatgccgagtgacaagaccatt 254
|| |||||||| ||||| || || ||||||||||| |||||||| |||||||| |||||
Sbjct: 54047641 ctgtactgccttgaacatggaattcagcccgatggtcagatgcccagtgacaaaaccatc 54047582
Query: 255 gggggaggagatgactccttcaacaccttcttcagtgagacaggcgctggcaagcatgtg 314
|| || || || ||||| |||||||| |||||||||||||| || || |||||||| |||
Sbjct: 54047581 ggcggtggggacgactcgttcaacacgttcttcagtgagactggggccggcaagcacgtg 54047522
Query: 315 cccagggcagtgtttgtagacctggaacccac 346
||||| || |||||||| |||||||| |||||
Sbjct: 54047521 cccagagccgtgtttgtggacctggagcccac 54047490
Score = 182 bits (92), Expect = 3e-43
Identities = 182/212 (85%)
Strand = Plus / Plus
Query: 135 gagtgcatctccatccacgttggccaagctggtgtccagatcggcaatgcctgctgggag 194
||||||||||| |||||||| || || || || || ||||||||||||||||||||||||
Sbjct: 54216341 gagtgcatctctatccacgtggggcaggcaggggttcagatcggcaatgcctgctgggag 54216400
Query: 195 ctctactgcctggaacacggcatccagcccgatggccagatgccgagtgacaagaccatt 254
|| |||||||| ||||| || || ||||||||||| |||||||| |||||||| |||||
Sbjct: 54216401 ctgtactgccttgaacatggaattcagcccgatggtcagatgcccagtgacaaaaccatc 54216460
Query: 255 gggggaggagatgactccttcaacaccttcttcagtgagacaggcgctggcaagcatgtg 314
|| || || || ||||| |||||||| |||||||||||||| || || |||||||| |||
Sbjct: 54216461 ggcggtggggacgactcgttcaacacgttcttcagtgagactggggccggcaagcacgtg 54216520
Query: 315 cccagggcagtgtttgtagacctggaacccac 346
||||| || |||||||| |||||||| |||||
Sbjct: 54216521 cccagagctgtgtttgtggacctggagcccac 54216552
Score = 95.6 bits (48), Expect = 6e-17
Identities = 99/116 (85%)
Strand = Plus / Minus
Query: 354 gatgaagttcgcactggcacctaccgccagctcttccaccctgagcagctcatcacaggc 413
|||||||| ||||| || |||||| | |||||||||||||| |||||||| ||||| ||
Sbjct: 54046693 gatgaagtgcgcacggggacctacaggcagctcttccacccggagcagctgatcaccggg 54046634
Query: 414 aaggaagatgctgccaataactatgcccgaggtcactacaccattggcaaggagat 469
|||||||| || ||||| || || ||| |||| ||||||||||| |||||||||||
Sbjct: 54046633 aaggaagacgcagccaacaattacgccagaggccactacaccatcggcaaggagat 54046578
Score = 95.6 bits (48), Expect = 6e-17
Identities = 99/116 (85%)
Strand = Plus / Plus
Query: 354 gatgaagttcgcactggcacctaccgccagctcttccaccctgagcagctcatcacaggc 413
|||||||| ||||| || |||||| | |||||||||||||| |||||||| ||||| ||
Sbjct: 54217349 gatgaagtgcgcacggggacctacaggcagctcttccacccggagcagctgatcaccggg 54217408
Query: 414 aaggaagatgctgccaataactatgcccgaggtcactacaccattggcaaggagat 469
|||||||| || ||||| || || ||| |||| ||||||||||| |||||||||||
Sbjct: 54217409 aaggaagacgcagccaacaattacgccagaggccactacaccatcggcaaggagat 54217464
>gb|GL895007.2| Sus scrofa unplaced genomic scaffold ChrUScaf2891
Length = 58772
Score = 424 bits (214), Expect = e-116
Identities = 550/662 (83%)
Strand = Plus / Minus
Query: 525 cagggcttcttggttttccacagctttggcgggggaacgggttctgggttcacctccctg 584
||||||||| || | |||||||| ||||| ||||| || || ||||| ||||| || |||
Sbjct: 17341 cagggcttcctgatcttccacagttttggggggggcaccggctctggcttcacttctctg 17282
Query: 585 ctgatggaacgtctctctgtcgattatggcaagaagtccaagctggagttctccatttac 644
||||||||||| ||||| | ||||| ||||||||||||||||| ||||| |||| |||
Sbjct: 17281 ctgatggaacgcctctccctggattacggcaagaagtccaagctagagtttgccatctac 17222
Query: 645 ccagccccccaggtttccacagctgtagttgagccctacaactccatcctcaccacccac 704
|| || |||||||| ||||| || || || || ||||||||||||||||| |||||||||
Sbjct: 17221 ccggcaccccaggtctccacggccgtggtggaaccctacaactccatcctgaccacccac 17162
Query: 705 accaccctggagcactctgattgtgccttcatggtagacaatgaggccatctatgacatc 764
||||||||||| || || || ||||||||||||| ||||| ||||||||||| ||||||
Sbjct: 17161 accaccctggaacattcagaaagtgccttcatggtggacaacgaggccatctacgacatc 17102
Query: 765 tgtcgtagaaaccttgatattgaacgcccaacctacactaatctgaaccgccttattagc 824
|| || || ||||| || || || ||||| |||||||| || || |||||||| || |||
Sbjct: 17101 tgccgcaggaacctggacatcgagcgccccacctacaccaacctcaaccgcctcatcagc 17042
Query: 825 caaattgtgtcctccatcactgcttccctgaggtttgatggggccctgaatgttgatctg 884
|| || |||||||||||||| || |||||| | |||||||||||||| || || || |||
Sbjct: 17041 cagatcgtgtcctccatcaccgcctccctgcgctttgatggggccctcaacgtggacctg 16982
Query: 885 acagaattccagaccaacctggtgccctacccccgcatccatttccctctggccacatac 944
|| || ||||||||||||||||||||||||||||||||||| ||||| |||| ||| |||
Sbjct: 16981 accgagttccagaccaacctggtgccctacccccgcatccacttccccctggtcacctac 16922
Query: 945 gcccccgtcatctctgctgaaaaagcctaccatgaacagcttactgtagcagagatcact 1004
|| ||| ||||||||||||| || |||||||| || ||||| |||| || ||||||||
Sbjct: 16921 gcacccatcatctctgctgagaaggcctaccacgagcagctctctgtggctgagatcacc 16862
Query: 1005 aatgcttgctttgagccagccaaccagatggtgaaatgtgaccctcgccatggtaaatac 1064
| | ||||||||||| || |||||||||||| ||||| || || ||||| || |||
Sbjct: 16861 agctcctgctttgagcccaacagccagatggtgaagtgtgatccccgtcatggcaagtac 16802
Query: 1065 atggcctgctgcctgttgtaccgtggtgacttggttcccaaagacgtcaatgccgccatt 1124
|||||||||||| || | ||||| || ||| |||| ||||| |||||||| | |||||||
Sbjct: 16801 atggcctgctgcatgctctaccggggggacgtggtgcccaaggacgtcaacgtcgccatt 16742
Query: 1125 gcccccctccaaaccaagcgcaacatccagtttgtggactggtgccccactggcttcaag 1184
|| || || | |||||| | | |||||||||||| |||||||| ||||| |||||||||
Sbjct: 16741 gctgccatcaagaccaagaggaccatccagtttgtagactggtgtcccacaggcttcaag 16682
Query: 1185 gt 1186
||
Sbjct: 16681 gt 16680
Score = 89.7 bits (45), Expect = 3e-15
Identities = 84/97 (86%)
Strand = Plus / Minus
Query: 372 acctaccgccagctcttccaccctgagcagctcatcacaggcaaggaagatgctgccaat 431
|||||||||||||||||||| || |||||||| |||||||| || || ||||| |||||
Sbjct: 19380 acctaccgccagctcttccatccagagcagctgatcacaggaaaagaggatgcagccaac 19321
Query: 432 aactatgcccgaggtcactacaccattggcaaggaga 468
||||||||||| || |||||||| | ||||||||||
Sbjct: 19320 aactatgcccggggccactacacagtgggcaaggaga 19284
>gb|GL895352.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3926
Length = 32274
Score = 278 bits (140), Expect = 7e-72
Identities = 212/232 (91%), Gaps = 3/232 (1%)
Strand = Plus / Plus
Query: 39 gttactcacctcgactcttagcttgtcggggacggtaaccaggactcggtgtctactcct 98
|||||||||||| ||||||||||||||||| |||| |||||| |||||| |||||||||
Sbjct: 7245 gttactcacctcaactcttagcttgtcggg-acggcaaccagaactcggcttctactcct 7303
Query: 99 gttgcctgcgcttgctgaccggtaaccaccatgcgtgagtgcatctccatccacgttggc 158
| ||||||||||||||||||| | ||||||||| |||||||||||||||||||| ||||
Sbjct: 7304 gctgcctgcgcttgctgaccgc-agccaccatgcatgagtgcatctccatccacgctggc 7362
Query: 159 caagctggtgtccagatcggcaatgcctgctgggagctctactgcctggaacacggcatc 218
||||| |||||||| | |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 7363 caagcctgtgtccaggttggcagtgcctgctgggagctctactgcctggaacacggcatc 7422
Query: 219 cagcccgatggccagatgccgagtgacaagaccattgggggaggagatgact 270
||||| |||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 7423 cagcctgatggccagatgcc-agtgacaagactattgggggaggagatgact 7473
>Sscrofa_Chr10
|| Length = 79102373
Score = 65.9 bits (33), Expect = 5e-08
Identities = 111/137 (81%)
Strand = Plus / Minus
Query: 627 ctggagttctccatttacccagccccccaggtttccacagctgtagttgagccctacaac 686
|||||||||||| | |||||||||||| | | ||||| || || || ||||| || |||
Sbjct: 71596981 ctggagttctccgtctacccagcccccaggatctccactgccgtggtggagccttataac 71596922
Query: 687 tccatcctcaccacccacaccaccctggagcactctgattgtgccttcatggtagacaat 746
||| |||| ||||| ||| ||||| | |||||||| || || ||||| || | ||||||
Sbjct: 71596921 tccgtccttaccacacaccccaccatagagcactcagactgcaccttcctgctggacaat 71596862
Query: 747 gaggccatctatgacat 763
|||||| ||||||||||
Sbjct: 71596861 gaggccgtctatgacat 71596845
Score = 65.9 bits (33), Expect = 5e-08
Identities = 111/137 (81%)
Strand = Plus / Plus
Query: 627 ctggagttctccatttacccagccccccaggtttccacagctgtagttgagccctacaac 686
|||||||||||| | |||||||||||| | | ||||| || || || ||||| || |||
Sbjct: 71671920 ctggagttctccgtctacccagcccccaggatctccactgccgtggtggagccttataac 71671979
Query: 687 tccatcctcaccacccacaccaccctggagcactctgattgtgccttcatggtagacaat 746
||| |||| ||||| ||| ||||| | |||||||| || || ||||| || | ||||||
Sbjct: 71671980 tccgtccttaccacacaccccaccatagagcactcagactgcaccttcctgctggacaat 71672039
Query: 747 gaggccatctatgacat 763
|||||| ||||||||||
Sbjct: 71672040 gaggccgtctatgacat 71672056
Score = 63.9 bits (32), Expect = 2e-07
Identities = 65/76 (85%)
Strand = Plus / Minus
Query: 148 tccacgttggccaagctggtgtccagatcggcaatgcctgctgggagctctactgcctgg 207
||||| ||||||||||||| |||||||| || |||| || ||||| ||||| |||||||
Sbjct: 71599685 tccacattggccaagctggcgtccagattggggatgcttgttgggaactctattgcctgg 71599626
Query: 208 aacacggcatccagcc 223
|||| || ||||||||
Sbjct: 71599625 aacatgggatccagcc 71599610
Score = 63.9 bits (32), Expect = 2e-07
Identities = 65/76 (85%)
Strand = Plus / Plus
Query: 148 tccacgttggccaagctggtgtccagatcggcaatgcctgctgggagctctactgcctgg 207
||||| ||||||||||||| |||||||| || |||| || ||||| ||||| |||||||
Sbjct: 71669216 tccacattggccaagctggcgtccagattggggatgcttgttgggaactctattgcctgg 71669275
Query: 208 aacacggcatccagcc 223
|||| || ||||||||
Sbjct: 71669276 aacatgggatccagcc 71669291
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,161,782
Number of extensions: 239
Number of successful extensions: 239
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 53
Length of query: 1263
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1242
Effective length of database: 2,808,413,156
Effective search space: 3488049139752
Effective search space used: 3488049139752
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)