Animal-Genome cDNA 20110601C-001761

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001761
         (1163 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001193236.1| polyubiquitin-C [Bos taurus].                     666   0.0  
Alignment   gi|NP_776558.1| polyubiquitin-B [Bos taurus].                        586   e-167
Alignment   gi|XP_002701748.1| PREDICTED: Os05g0242100-like [Bos taurus].        345   4e-95
Alignment   gi|XP_002694610.1| PREDICTED: Os05g0242100-like [Bos taurus].        304   1e-82
Alignment   gi|XP_002695905.1| PREDICTED: Os05g0242100-like [Bos taurus].        232   5e-61
Alignment   gi|XP_002702199.1| PREDICTED: Os05g0242100-like [Bos taurus].        232   5e-61
Alignment   gi|NP_001069831.1| ubiquitin-60S ribosomal protein L40 [Bos tau...   151   9e-37
Alignment   gi|NP_777203.1| ubiquitin-40S ribosomal protein S27a [Bos tauru...   151   1e-36
Alignment   gi|XP_001251963.2| PREDICTED: ubiquitin B-like, partial [Bos ta...   150   2e-36
Alignment   gi|XP_002694527.1| PREDICTED: ubiquitin B-like [Bos taurus].         149   6e-36

>ref|NP_001193236.1| polyubiquitin-C [Bos taurus].
          Length = 690

 Score =  666 bits (1719), Expect = 0.0
 Identities = 343/346 (99%), Positives = 343/346 (99%)
 Frame = +2

Query: 110  MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
            MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 290  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 469
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61   IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 470  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 649
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 650  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 829
            KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 830  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 1009
            ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
Sbjct: 241  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 300

Query: 1010 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG PP  QR
Sbjct: 301  LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 346



 Score =  663 bits (1710), Expect = 0.0
 Identities = 341/346 (98%), Positives = 342/346 (98%)
 Frame = +2

Query: 110  MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
            MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 77   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136

Query: 290  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 469
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 137  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 196

Query: 470  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 649
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 197  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 256

Query: 650  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 829
            KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 257  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 316

Query: 830  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 1009
            ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
Sbjct: 317  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 376

Query: 1010 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG PP  QR
Sbjct: 377  LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 422



 Score =  663 bits (1710), Expect = 0.0
 Identities = 341/346 (98%), Positives = 342/346 (98%)
 Frame = +2

Query: 110  MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
            MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 153  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212

Query: 290  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 469
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 213  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 272

Query: 470  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 649
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 273  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 332

Query: 650  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 829
            KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 333  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 392

Query: 830  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 1009
            ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
Sbjct: 393  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 452

Query: 1010 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG PP  QR
Sbjct: 453  LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 498



 Score =  663 bits (1710), Expect = 0.0
 Identities = 341/346 (98%), Positives = 342/346 (98%)
 Frame = +2

Query: 110  MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
            MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 229  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288

Query: 290  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 469
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 289  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 348

Query: 470  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 649
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 349  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 408

Query: 650  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 829
            KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 409  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 468

Query: 830  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 1009
            ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
Sbjct: 469  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 528

Query: 1010 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG PP  QR
Sbjct: 529  LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 574



 Score =  663 bits (1710), Expect = 0.0
 Identities = 341/346 (98%), Positives = 342/346 (98%)
 Frame = +2

Query: 110  MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
            MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 305  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364

Query: 290  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 469
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 365  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 424

Query: 470  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 649
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 425  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 484

Query: 650  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 829
            KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 485  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 544

Query: 830  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 1009
            ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
Sbjct: 545  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 604

Query: 1010 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG PP  QR
Sbjct: 605  LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 650



 Score =  588 bits (1517), Expect = e-168
 Identities = 302/305 (99%), Positives = 304/305 (99%)
 Frame = +2

Query: 110  MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
            MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 381  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440

Query: 290  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 469
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 441  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 500

Query: 470  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 649
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 501  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 560

Query: 650  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 829
            KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 561  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 620

Query: 830  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 1009
            ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
Sbjct: 621  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 680

Query: 1010 LRGGM 1024
            LRGG+
Sbjct: 681  LRGGV 685


>ref|NP_776558.1| polyubiquitin-B [Bos taurus].
          Length = 305

 Score =  586 bits (1510), Expect = e-167
 Identities = 301/304 (99%), Positives = 302/304 (99%)
 Frame = +2

Query: 110  MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
            MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 290  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 469
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61   IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 470  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 649
            FAGKQLEDGRTL DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121  FAGKQLEDGRTLFDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 650  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 829
            KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 830  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 1009
            ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
Sbjct: 241  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 300

Query: 1010 LRGG 1021
            LRGG
Sbjct: 301  LRGG 304



 Score =  517 bits (1331), Expect = e-147
 Identities = 266/270 (98%), Positives = 266/270 (98%)
 Frame = +2

Query: 338  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 517
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 518  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 697
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61   IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 698  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 877
            FAGKQLEDGRTL DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121  FAGKQLEDGRTLFDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 878  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 1057
            KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 1058 ITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            ITLEVEPSDTIENVKAKIQDKEG PP  QR
Sbjct: 241  ITLEVEPSDTIENVKAKIQDKEGIPPDQQR 270


>ref|XP_002701748.1| PREDICTED: Os05g0242100-like [Bos taurus].
          Length = 752

 Score =  345 bits (885), Expect = 4e-95
 Identities = 193/346 (55%), Positives = 198/346 (57%)
 Frame = -2

Query: 1147 PLCGRGEAXXXXXXXXXXXDGVAGLHFQGDGLTSQGLHEDLHPTSEAEXXXXXXXXXXXX 968
            PL   G+A           DGV GLH Q DGL  QGLHEDLHPTSEAE            
Sbjct: 348  PLLVWGDALFVLDLGLDVLDGVTGLHLQSDGLAGQGLHEDLHPTSEAEDQVQSGLFLDVV 407

Query: 967  XXXGAPIFQLLPGKDQPLLVWGDAFXXXXXXXXXXXXXXXLHFQGDGLTSQGLHEDLHPT 788
               GA IFQL PGKDQPLLVWGDA                LH QGDGL  QGLHEDLHPT
Sbjct: 408  VRQGAAIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDLHPT 467

Query: 787  SEAEXXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWGDAFXXXXXXXXXXXXXXXLHFQ 608
            SEAE               GA IFQL PGKDQPLLVWGDA                LH Q
Sbjct: 468  SEAEDQVQSGLFLDVVVRQGAAIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQ 527

Query: 607  GDGLTSQGLHEDLHPTSEAEXXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWGDAFXXX 428
            GDGL  QGLHEDLHPTSEAE               GAPIFQL PGKDQPLLVWGDA    
Sbjct: 528  GDGLAGQGLHEDLHPTSEAEDQVQSGLFLDVVVRQGAPIFQLFPGKDQPLLVWGDALFVL 587

Query: 427  XXXXXXXXXXXXLHFQGDGLTSQGLHEDLHPTSEAEXXXXXXXXXXXXXXXGAPIFQLLP 248
                        LH QGDGL  QGLHEDLHPTSEAE               GA IFQL P
Sbjct: 588  DLGLDVLDGVTGLHLQGDGLAGQGLHEDLHPTSEAEDQVQSGLLLDVVVRQGAAIFQLFP 647

Query: 247  GKDQPLLVWGDALFFLNLPLDILNGVTGLHFQGDGLTSQGLYKDLH 110
            GKDQPLLVWGDA FFL LPLD+L+GVTGLH Q DG TS+GL+KDLH
Sbjct: 648  GKDQPLLVWGDAFFFLYLPLDVLDGVTGLHLQSDGFTSEGLHKDLH 693



 Score =  342 bits (878), Expect = 3e-94
 Identities = 192/346 (55%), Positives = 198/346 (57%)
 Frame = -2

Query: 1147 PLCGRGEAXXXXXXXXXXXDGVAGLHFQGDGLTSQGLHEDLHPTSEAEXXXXXXXXXXXX 968
            PL   G+A           DGV GLH QGDGL  QGLHEDLHPTSEAE            
Sbjct: 44   PLLVWGDALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDLHPTSEAEDQVQSGLFLDVV 103

Query: 967  XXXGAPIFQLLPGKDQPLLVWGDAFXXXXXXXXXXXXXXXLHFQGDGLTSQGLHEDLHPT 788
               GA IFQL PGKDQPLLVWGDA                LH Q DGL  QGLHEDLHPT
Sbjct: 104  VRQGAAIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQSDGLAGQGLHEDLHPT 163

Query: 787  SEAEXXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWGDAFXXXXXXXXXXXXXXXLHFQ 608
            SEAE               GA IFQL PGKDQPLLVWGDA                LH Q
Sbjct: 164  SEAEDQVQSGLFLDVVVRQGAAIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQ 223

Query: 607  GDGLTSQGLHEDLHPTSEAEXXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWGDAFXXX 428
            GDGL  QGLHEDLHPTSEAE               GAPIFQL PGKDQPLLVWGDA    
Sbjct: 224  GDGLAGQGLHEDLHPTSEAEDQVQSGLLLDVVVRQGAPIFQLFPGKDQPLLVWGDALFVL 283

Query: 427  XXXXXXXXXXXXLHFQGDGLTSQGLHEDLHPTSEAEXXXXXXXXXXXXXXXGAPIFQLLP 248
                        LH QGDGL  QGLHEDLHPTSEAE               GAPIFQL P
Sbjct: 284  DLGLDVLDGVTGLHLQGDGLAGQGLHEDLHPTSEAEDQVQSGLFLDVVVRQGAPIFQLFP 343

Query: 247  GKDQPLLVWGDALFFLNLPLDILNGVTGLHFQGDGLTSQGLYKDLH 110
            GKDQPLLVWGDALF L+L LD+L+GVTGLH Q DGL  QGL++DLH
Sbjct: 344  GKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQSDGLAGQGLHEDLH 389



 Score =  296 bits (757), Expect = 3e-80
 Identities = 162/282 (57%), Positives = 167/282 (59%)
 Frame = -2

Query: 955 APIFQLLPGKDQPLLVWGDAFXXXXXXXXXXXXXXXLHFQGDGLTSQGLHEDLHPTSEAE 776
           A IFQL PGKDQPLLVWGDA                LH QGDGL  QGLHEDLHPTSEAE
Sbjct: 32  AAIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDLHPTSEAE 91

Query: 775 XXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWGDAFXXXXXXXXXXXXXXXLHFQGDGL 596
                          GA IFQL PGKDQPLLVWGDA                LH Q DGL
Sbjct: 92  DQVQSGLFLDVVVRQGAAIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQSDGL 151

Query: 595 TSQGLHEDLHPTSEAEXXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWGDAFXXXXXXX 416
             QGLHEDLHPTSEAE               GA IFQL PGKDQPLLVWGDA        
Sbjct: 152 AGQGLHEDLHPTSEAEDQVQSGLFLDVVVRQGAAIFQLFPGKDQPLLVWGDALFVLDLGL 211

Query: 415 XXXXXXXXLHFQGDGLTSQGLHEDLHPTSEAEXXXXXXXXXXXXXXXGAPIFQLLPGKDQ 236
                   LH QGDGL  QGLHEDLHPTSEAE               GAPIFQL PGKDQ
Sbjct: 212 DVLDGVTGLHLQGDGLAGQGLHEDLHPTSEAEDQVQSGLLLDVVVRQGAPIFQLFPGKDQ 271

Query: 235 PLLVWGDALFFLNLPLDILNGVTGLHFQGDGLTSQGLYKDLH 110
           PLLVWGDALF L+L LD+L+GVTGLH QGDGL  QGL++DLH
Sbjct: 272 PLLVWGDALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDLH 313



 Score =  255 bits (652), Expect = 5e-68
 Identities = 146/275 (53%), Positives = 150/275 (54%)
 Frame = -2

Query: 1147 PLCGRGEAXXXXXXXXXXXDGVAGLHFQGDGLTSQGLHEDLHPTSEAEXXXXXXXXXXXX 968
            PL   G+A           DGV GLH QGDGL  QGLHEDLHPTSEAE            
Sbjct: 424  PLLVWGDALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDLHPTSEAEDQVQSGLFLDVV 483

Query: 967  XXXGAPIFQLLPGKDQPLLVWGDAFXXXXXXXXXXXXXXXLHFQGDGLTSQGLHEDLHPT 788
               GA IFQL PGKDQPLLVWGDA                LH QGDGL  QGLHEDLHPT
Sbjct: 484  VRQGAAIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDLHPT 543

Query: 787  SEAEXXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWGDAFXXXXXXXXXXXXXXXLHFQ 608
            SEAE               GAPIFQL PGKDQPLLVWGDA                LH Q
Sbjct: 544  SEAEDQVQSGLFLDVVVRQGAPIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQ 603

Query: 607  GDGLTSQGLHEDLHPTSEAEXXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWGDAFXXX 428
            GDGL  QGLHEDLHPTSEAE               GA IFQL PGKDQPLLVWGDAF   
Sbjct: 604  GDGLAGQGLHEDLHPTSEAEDQVQSGLLLDVVVRQGAAIFQLFPGKDQPLLVWGDAFFFL 663

Query: 427  XXXXXXXXXXXXLHFQGDGLTSQGLHEDLHPTSEA 323
                        LH Q DG TS+GLH+DLH +SEA
Sbjct: 664  YLPLDVLDGVTGLHLQSDGFTSEGLHKDLHSSSEA 698


>ref|XP_002694610.1| PREDICTED: Os05g0242100-like [Bos taurus].
          Length = 481

 Score =  304 bits (778), Expect = 1e-82
 Identities = 164/282 (58%), Positives = 169/282 (59%)
 Frame = -2

Query: 955  APIFQLLPGKDQPLLVWGDAFXXXXXXXXXXXXXXXLHFQGDGLTSQGLHEDLHPTSEAE 776
            APIFQL PGKDQPLLVWGDA                LH Q DGL  QGLHEDLHPTSEAE
Sbjct: 181  APIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQSDGLAGQGLHEDLHPTSEAE 240

Query: 775  XXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWGDAFXXXXXXXXXXXXXXXLHFQGDGL 596
                           GAPIFQL PGKDQPLLVWGDA                LH QGDGL
Sbjct: 241  DQVQSGLFLDVVVRQGAPIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGDGL 300

Query: 595  TSQGLHEDLHPTSEAEXXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWGDAFXXXXXXX 416
              QGLHEDLHPTSEAE               GAPIFQL PGKDQPLLVWGDA        
Sbjct: 301  AGQGLHEDLHPTSEAEDQVQSGLLLDVVVRQGAPIFQLFPGKDQPLLVWGDALFVLDLGL 360

Query: 415  XXXXXXXXLHFQGDGLTSQGLHEDLHPTSEAEXXXXXXXXXXXXXXXGAPIFQLLPGKDQ 236
                    LH QGDGL  QGLHEDLHPTSEAE               GAPIFQL PGKDQ
Sbjct: 361  DVLDGVTGLHLQGDGLAGQGLHEDLHPTSEAEDQVQSGLFLDVVVRQGAPIFQLFPGKDQ 420

Query: 235  PLLVWGDALFFLNLPLDILNGVTGLHFQGDGLTSQGLYKDLH 110
            PLLVWGDALF L+L LD+L+GVTGLH QGDG   QGL++DLH
Sbjct: 421  PLLVWGDALFVLDLALDVLDGVTGLHLQGDGFAGQGLHEDLH 462



 Score =  263 bits (672), Expect = 2e-70
 Identities = 149/275 (54%), Positives = 150/275 (54%)
 Frame = -2

Query: 1147 PLCGRGEAXXXXXXXXXXXDGVAGLHFQGDGLTSQGLHEDLHPTSEAEXXXXXXXXXXXX 968
            PL   G+A           DGV GLH Q DGL  QGLHEDLHPTSEAE            
Sbjct: 193  PLLVWGDALFVLDLGLDVLDGVTGLHLQSDGLAGQGLHEDLHPTSEAEDQVQSGLFLDVV 252

Query: 967  XXXGAPIFQLLPGKDQPLLVWGDAFXXXXXXXXXXXXXXXLHFQGDGLTSQGLHEDLHPT 788
               GAPIFQL PGKDQPLLVWGDA                LH QGDGL  QGLHEDLHPT
Sbjct: 253  VRQGAPIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDLHPT 312

Query: 787  SEAEXXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWGDAFXXXXXXXXXXXXXXXLHFQ 608
            SEAE               GAPIFQL PGKDQPLLVWGDA                LH Q
Sbjct: 313  SEAEDQVQSGLLLDVVVRQGAPIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQ 372

Query: 607  GDGLTSQGLHEDLHPTSEAEXXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWGDAFXXX 428
            GDGL  QGLHEDLHPTSEAE               GAPIFQL PGKDQPLLVWGDA    
Sbjct: 373  GDGLAGQGLHEDLHPTSEAEDQVQSGLFLDVVVRQGAPIFQLFPGKDQPLLVWGDALFVL 432

Query: 427  XXXXXXXXXXXXLHFQGDGLTSQGLHEDLHPTSEA 323
                        LH QGDG   QGLHEDLHPTSEA
Sbjct: 433  DLALDVLDGVTGLHLQGDGFAGQGLHEDLHPTSEA 467


>ref|XP_002695905.1| PREDICTED: Os05g0242100-like [Bos taurus].
          Length = 460

 Score =  232 bits (591), Expect = 5e-61
 Identities = 134/282 (47%), Positives = 151/282 (53%)
 Frame = -2

Query: 955  APIFQLLPGKDQPLLVWGDAFXXXXXXXXXXXXXXXLHFQGDGLTSQGLHEDLHPTSEAE 776
            A IFQLL GKD+PLLV G+AF               LHFQGDGL  QGLHEDLH T + E
Sbjct: 176  AAIFQLLAGKDEPLLVRGNAFLILDLGLHVLDGVTGLHFQGDGLAGQGLHEDLHTTPQTE 235

Query: 775  XXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWGDAFXXXXXXXXXXXXXXXLHFQGDGL 596
                            A IFQLL GKD+PLLV G+AF               LH QGDGL
Sbjct: 236  DQVQGRLFLDVVIRKSAAIFQLLAGKDEPLLVRGNAFLILDLGLHVLDGVTGLHLQGDGL 295

Query: 595  TSQGLHEDLHPTSEAEXXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWGDAFXXXXXXX 416
              QGLHEDLH T + E                A IFQLL GKD+PLLV G+A        
Sbjct: 296  AGQGLHEDLHTTPQTEDQVQGRLFLDVVIRKSAAIFQLLAGKDEPLLVGGNALLILDLGL 355

Query: 415  XXXXXXXXLHFQGDGLTSQGLHEDLHPTSEAEXXXXXXXXXXXXXXXGAPIFQLLPGKDQ 236
                    LHFQGDGL  QGLHE+LH T + E                A IFQLL GKD+
Sbjct: 356  HVLDGVTGLHFQGDGLAGQGLHENLHTTPQTEDQVQGRLFLDVVIRKSAAIFQLLAGKDE 415

Query: 235  PLLVWGDALFFLNLPLDILNGVTGLHFQGDGLTSQGLYKDLH 110
            PLLV G+A   L+L L +L+GVTGLH QGDGL  QG ++DLH
Sbjct: 416  PLLVRGNAFLILDLGLHVLDGVTGLHLQGDGLAGQGFHEDLH 457



 Score =  203 bits (517), Expect = 2e-52
 Identities = 122/270 (45%), Positives = 132/270 (48%)
 Frame = -2

Query: 1147 PLCGRGEAXXXXXXXXXXXDGVAGLHFQGDGLTSQGLHEDLHPTSEAEXXXXXXXXXXXX 968
            PL  RG A           DGV GLHFQGDGL  QGLHEDLH T + E            
Sbjct: 188  PLLVRGNAFLILDLGLHVLDGVTGLHFQGDGLAGQGLHEDLHTTPQTEDQVQGRLFLDVV 247

Query: 967  XXXGAPIFQLLPGKDQPLLVWGDAFXXXXXXXXXXXXXXXLHFQGDGLTSQGLHEDLHPT 788
                A IFQLL GKD+PLLV G+AF               LH QGDGL  QGLHEDLH T
Sbjct: 248  IRKSAAIFQLLAGKDEPLLVRGNAFLILDLGLHVLDGVTGLHLQGDGLAGQGLHEDLHTT 307

Query: 787  SEAEXXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWGDAFXXXXXXXXXXXXXXXLHFQ 608
             + E                A IFQLL GKD+PLLV G+A                LHFQ
Sbjct: 308  PQTEDQVQGRLFLDVVIRKSAAIFQLLAGKDEPLLVGGNALLILDLGLHVLDGVTGLHFQ 367

Query: 607  GDGLTSQGLHEDLHPTSEAEXXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWGDAFXXX 428
            GDGL  QGLHE+LH T + E                A IFQLL GKD+PLLV G+AF   
Sbjct: 368  GDGLAGQGLHENLHTTPQTEDQVQGRLFLDVVIRKSAAIFQLLAGKDEPLLVRGNAFLIL 427

Query: 427  XXXXXXXXXXXXLHFQGDGLTSQGLHEDLH 338
                        LH QGDGL  QG HEDLH
Sbjct: 428  DLGLHVLDGVTGLHLQGDGLAGQGFHEDLH 457


>ref|XP_002702199.1| PREDICTED: Os05g0242100-like [Bos taurus].
          Length = 460

 Score =  232 bits (591), Expect = 5e-61
 Identities = 134/282 (47%), Positives = 151/282 (53%)
 Frame = -2

Query: 955  APIFQLLPGKDQPLLVWGDAFXXXXXXXXXXXXXXXLHFQGDGLTSQGLHEDLHPTSEAE 776
            A IFQLL GKD+PLLV G+AF               LHFQGDGL  QGLHEDLH T + E
Sbjct: 176  AAIFQLLAGKDEPLLVRGNAFLILDLGLHVLDGVTGLHFQGDGLAGQGLHEDLHTTPQTE 235

Query: 775  XXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWGDAFXXXXXXXXXXXXXXXLHFQGDGL 596
                            A IFQLL GKD+PLLV G+AF               LH QGDGL
Sbjct: 236  DQVQGRLFLDVVIRKSAAIFQLLAGKDEPLLVRGNAFLILDLGLHVLDGVTGLHLQGDGL 295

Query: 595  TSQGLHEDLHPTSEAEXXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWGDAFXXXXXXX 416
              QGLHEDLH T + E                A IFQLL GKD+PLLV G+A        
Sbjct: 296  AGQGLHEDLHTTPQTEDQVQGRLFLDVVIRKSAAIFQLLAGKDEPLLVGGNALLILDLGL 355

Query: 415  XXXXXXXXLHFQGDGLTSQGLHEDLHPTSEAEXXXXXXXXXXXXXXXGAPIFQLLPGKDQ 236
                    LHFQGDGL  QGLHE+LH T + E                A IFQLL GKD+
Sbjct: 356  HVLDGVTGLHFQGDGLAGQGLHENLHTTPQTEDQVQGRLFLDVVIRKSAAIFQLLAGKDE 415

Query: 235  PLLVWGDALFFLNLPLDILNGVTGLHFQGDGLTSQGLYKDLH 110
            PLLV G+A   L+L L +L+GVTGLH QGDGL  QG ++DLH
Sbjct: 416  PLLVRGNAFLILDLGLHVLDGVTGLHLQGDGLAGQGFHEDLH 457



 Score =  203 bits (517), Expect = 2e-52
 Identities = 122/270 (45%), Positives = 132/270 (48%)
 Frame = -2

Query: 1147 PLCGRGEAXXXXXXXXXXXDGVAGLHFQGDGLTSQGLHEDLHPTSEAEXXXXXXXXXXXX 968
            PL  RG A           DGV GLHFQGDGL  QGLHEDLH T + E            
Sbjct: 188  PLLVRGNAFLILDLGLHVLDGVTGLHFQGDGLAGQGLHEDLHTTPQTEDQVQGRLFLDVV 247

Query: 967  XXXGAPIFQLLPGKDQPLLVWGDAFXXXXXXXXXXXXXXXLHFQGDGLTSQGLHEDLHPT 788
                A IFQLL GKD+PLLV G+AF               LH QGDGL  QGLHEDLH T
Sbjct: 248  IRKSAAIFQLLAGKDEPLLVRGNAFLILDLGLHVLDGVTGLHLQGDGLAGQGLHEDLHTT 307

Query: 787  SEAEXXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWGDAFXXXXXXXXXXXXXXXLHFQ 608
             + E                A IFQLL GKD+PLLV G+A                LHFQ
Sbjct: 308  PQTEDQVQGRLFLDVVIRKSAAIFQLLAGKDEPLLVGGNALLILDLGLHVLDGVTGLHFQ 367

Query: 607  GDGLTSQGLHEDLHPTSEAEXXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWGDAFXXX 428
            GDGL  QGLHE+LH T + E                A IFQLL GKD+PLLV G+AF   
Sbjct: 368  GDGLAGQGLHENLHTTPQTEDQVQGRLFLDVVIRKSAAIFQLLAGKDEPLLVRGNAFLIL 427

Query: 427  XXXXXXXXXXXXLHFQGDGLTSQGLHEDLH 338
                        LH QGDGL  QG HEDLH
Sbjct: 428  DLGLHVLDGVTGLHLQGDGLAGQGFHEDLH 457


>ref|NP_001069831.1| ubiquitin-60S ribosomal protein L40 [Bos taurus].
          Length = 128

 Score =  151 bits (382), Expect = 9e-37
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +2

Query: 338 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 517
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 518 IQKESTLHLVLRLRGGM 568
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (382), Expect = 9e-37
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +2

Query: 566 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 745
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 746 IQKESTLHLVLRLRGGM 796
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (382), Expect = 9e-37
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +2

Query: 794  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 973
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 974  IQKESTLHLVLRLRGGM 1024
            IQKESTLHLVLRLRGG+
Sbjct: 61   IQKESTLHLVLRLRGGI 77



 Score =  148 bits (374), Expect = 8e-36
 Identities = 74/77 (96%), Positives = 76/77 (98%)
 Frame = +2

Query: 110 MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
           MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 290 IQKESTLHLVLRLRGGM 340
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score = 79.3 bits (194), Expect(2) = 2e-15
 Identities = 39/42 (92%), Positives = 39/42 (92%)
 Frame = +2

Query: 1022 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG PP  QR
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 42



 Score = 21.6 bits (44), Expect(2) = 2e-15
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 1126 LPPDHTKVIFAG 1161
            +PPD  ++IFAG
Sbjct: 36   IPPDQQRLIFAG 47


>ref|NP_777203.1| ubiquitin-40S ribosomal protein S27a [Bos taurus].
          Length = 156

 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +2

Query: 338 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 517
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 518 IQKESTLHLVLRLRGG 565
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +2

Query: 566 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 745
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 746 IQKESTLHLVLRLRGG 793
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +2

Query: 794  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 973
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 974  IQKESTLHLVLRLRGG 1021
            IQKESTLHLVLRLRGG
Sbjct: 61   IQKESTLHLVLRLRGG 76



 Score =  148 bits (373), Expect = 1e-35
 Identities = 74/76 (97%), Positives = 75/76 (98%)
 Frame = +2

Query: 110 MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
           MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 290 IQKESTLHLVLRLRGG 337
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score = 79.3 bits (194), Expect(2) = 2e-15
 Identities = 39/42 (92%), Positives = 39/42 (92%)
 Frame = +2

Query: 1022 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG PP  QR
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 42



 Score = 21.6 bits (44), Expect(2) = 2e-15
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 1126 LPPDHTKVIFAG 1161
            +PPD  ++IFAG
Sbjct: 36   IPPDQQRLIFAG 47


>ref|XP_001251963.2| PREDICTED: ubiquitin B-like, partial [Bos taurus].
          Length = 88

 Score =  150 bits (380), Expect = 2e-36
 Identities = 77/85 (90%), Positives = 79/85 (92%)
 Frame = +2

Query: 311 HLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 490
           HL +  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI AGKQLE
Sbjct: 3   HLRIHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLILAGKQLE 62

Query: 491 DGRTLSDYNIQKESTLHLVLRLRGG 565
           DGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 63  DGRTLSDYNIQKESTLHLVLRLRGG 87



 Score =  150 bits (380), Expect = 2e-36
 Identities = 77/85 (90%), Positives = 79/85 (92%)
 Frame = +2

Query: 539 HLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 718
           HL +  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI AGKQLE
Sbjct: 3   HLRIHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLILAGKQLE 62

Query: 719 DGRTLSDYNIQKESTLHLVLRLRGG 793
           DGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 63  DGRTLSDYNIQKESTLHLVLRLRGG 87



 Score =  150 bits (380), Expect = 2e-36
 Identities = 77/85 (90%), Positives = 79/85 (92%)
 Frame = +2

Query: 767  HLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 946
            HL +  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI AGKQLE
Sbjct: 3    HLRIHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLILAGKQLE 62

Query: 947  DGRTLSDYNIQKESTLHLVLRLRGG 1021
            DGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 63   DGRTLSDYNIQKESTLHLVLRLRGG 87



 Score =  148 bits (374), Expect = 8e-36
 Identities = 74/81 (91%), Positives = 76/81 (93%)
 Frame = +2

Query: 95  HCHLTMQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRT 274
           H  + MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLI AGKQLEDGRT
Sbjct: 7   HSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLILAGKQLEDGRT 66

Query: 275 LSDYNIQKESTLHLVLRLRGG 337
           LSDYNIQKESTLHLVLRLRGG
Sbjct: 67  LSDYNIQKESTLHLVLRLRGG 87



 Score = 82.4 bits (202), Expect = 7e-16
 Identities = 43/56 (76%), Positives = 45/56 (80%)
 Frame = +2

Query: 995  HLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGFPPTTQR*SLPG 1162
            HL +  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG PP  QR  L G
Sbjct: 3    HLRIHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLILAG 58


>ref|XP_002694527.1| PREDICTED: ubiquitin B-like [Bos taurus].
          Length = 77

 Score =  149 bits (375), Expect = 6e-36
 Identities = 75/76 (98%), Positives = 75/76 (98%)
 Frame = +2

Query: 338 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 517
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI AGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLILAGKQLEDGRTLSDYN 60

Query: 518 IQKESTLHLVLRLRGG 565
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  149 bits (375), Expect = 6e-36
 Identities = 75/76 (98%), Positives = 75/76 (98%)
 Frame = +2

Query: 566 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 745
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI AGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLILAGKQLEDGRTLSDYN 60

Query: 746 IQKESTLHLVLRLRGG 793
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  149 bits (375), Expect = 6e-36
 Identities = 75/76 (98%), Positives = 75/76 (98%)
 Frame = +2

Query: 794  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 973
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI AGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLILAGKQLEDGRTLSDYN 60

Query: 974  IQKESTLHLVLRLRGG 1021
            IQKESTLHLVLRLRGG
Sbjct: 61   IQKESTLHLVLRLRGG 76



 Score =  145 bits (367), Expect = 5e-35
 Identities = 73/76 (96%), Positives = 74/76 (97%)
 Frame = +2

Query: 110 MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
           MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLI AGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLILAGKQLEDGRTLSDYN 60

Query: 290 IQKESTLHLVLRLRGG 337
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score = 80.5 bits (197), Expect = 3e-15
 Identities = 41/47 (87%), Positives = 41/47 (87%)
 Frame = +2

Query: 1022 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGFPPTTQR*SLPG 1162
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG PP  QR  L G
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLILAG 47


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,800,315
Number of extensions: 1264861
Number of successful extensions: 5716
Number of sequences better than 1.0e-05: 34
Number of HSP's gapped: 5501
Number of HSP's successfully gapped: 150
Length of query: 387
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 283
Effective length of database: 14,240,222
Effective search space: 4029982826
Effective search space used: 4029982826
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001761
         (1163 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_853060.1| PREDICTED: similar to CG11624-PA, isoform A [Ca...   663   0.0  
Alignment   gi|XP_536651.2| PREDICTED: similar to ubiquitin B precursor iso...   442   e-124
Alignment   gi|XP_863683.1| PREDICTED: similar to ubiquitin B precursor iso...   298   9e-81
Alignment   gi|XP_863640.1| PREDICTED: similar to ubiquitin B precursor iso...   280   1e-75
Alignment   gi|XP_851119.1| PREDICTED: similar to polyubiquitin [Canis fami...   164   2e-40
Alignment   gi|NP_001121567.1| ubiquitin-60S ribosomal protein L40 precurso...   151   1e-36
Alignment   gi|NP_001030325.1| hypothetical protein LOC612529 [Canis lupus ...   151   1e-36
Alignment   gi|XP_531829.2| PREDICTED: similar to ubiquitin and ribosomal p...   151   1e-36
Alignment   gi|XP_852564.1| PREDICTED: similar to ubiquitin B precursor [Ca...   147   2e-35
Alignment   gi|XP_538142.1| PREDICTED: similar to ubiquitin and ribosomal p...   143   3e-34

>ref|XP_853060.1| PREDICTED: similar to CG11624-PA, isoform A [Canis familiaris].
          Length = 381

 Score =  663 bits (1710), Expect = 0.0
 Identities = 341/346 (98%), Positives = 342/346 (98%)
 Frame = +2

Query: 110  MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
            MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 290  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 469
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61   IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 470  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 649
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 650  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 829
            KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 830  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 1009
            ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
Sbjct: 241  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 300

Query: 1010 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG PP  QR
Sbjct: 301  LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 346



 Score =  588 bits (1517), Expect = e-168
 Identities = 302/305 (99%), Positives = 304/305 (99%)
 Frame = +2

Query: 110  MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
            MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 77   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136

Query: 290  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 469
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 137  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 196

Query: 470  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 649
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 197  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 256

Query: 650  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 829
            KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 257  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 316

Query: 830  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 1009
            ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
Sbjct: 317  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 376

Query: 1010 LRGGM 1024
            LRGG+
Sbjct: 377  LRGGV 381


>ref|XP_536651.2| PREDICTED: similar to ubiquitin B precursor isoform 1 [Canis
            familiaris].
          Length = 229

 Score =  442 bits (1137), Expect = e-124
 Identities = 227/228 (99%), Positives = 227/228 (99%)
 Frame = +2

Query: 338  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 517
            M IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MPIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 518  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 697
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61   IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 698  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 877
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 878  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 1021
            KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 181  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228



 Score =  439 bits (1129), Expect = e-123
 Identities = 225/228 (98%), Positives = 226/228 (99%)
 Frame = +2

Query: 110 MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
           M IFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MPIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 290 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 469
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 470 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 649
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 650 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 793
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228



 Score =  370 bits (950), Expect = e-102
 Identities = 190/194 (97%), Positives = 190/194 (97%)
 Frame = +2

Query: 566  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 745
            M IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MPIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 746  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 925
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61   IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 926  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 1105
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 1106 KIQDKEGFPPTTQR 1147
            KIQDKEG PP  QR
Sbjct: 181  KIQDKEGIPPDQQR 194


>ref|XP_863683.1| PREDICTED: similar to ubiquitin B precursor isoform 3 [Canis
           familiaris].
          Length = 153

 Score =  298 bits (762), Expect = 9e-81
 Identities = 152/152 (100%), Positives = 152/152 (100%)
 Frame = +2

Query: 338 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 517
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 518 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 697
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 698 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 793
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152



 Score =  298 bits (762), Expect = 9e-81
 Identities = 152/152 (100%), Positives = 152/152 (100%)
 Frame = +2

Query: 566  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 745
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 746  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 925
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61   IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 926  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 1021
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 121  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152



 Score =  295 bits (754), Expect = 7e-80
 Identities = 150/152 (98%), Positives = 151/152 (99%)
 Frame = +2

Query: 110 MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
           MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 290 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 469
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 470 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 565
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152



 Score =  226 bits (575), Expect = 4e-59
 Identities = 115/118 (97%), Positives = 115/118 (97%)
 Frame = +2

Query: 794  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 973
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 974  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG PP  QR
Sbjct: 61   IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 118


>ref|XP_863640.1| PREDICTED: similar to ubiquitin B precursor isoform 2 [Canis
           familiaris].
          Length = 181

 Score =  280 bits (717), Expect = 1e-75
 Identities = 151/180 (83%), Positives = 151/180 (83%), Gaps = 28/180 (15%)
 Frame = +2

Query: 338 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 517
           M IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MPIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 518 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLE---------------------------- 613
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLE                            
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLESTLHLVLRLRGGMQIFVKTLTGKTITLE 120

Query: 614 VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 793
           VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 121 VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 180



 Score =  280 bits (717), Expect = 1e-75
 Identities = 151/180 (83%), Positives = 151/180 (83%), Gaps = 28/180 (15%)
 Frame = +2

Query: 566  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 745
            M IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MPIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 746  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLE---------------------------- 841
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLE                            
Sbjct: 61   IQKESTLHLVLRLRGGMQIFVKTLTGKTITLESTLHLVLRLRGGMQIFVKTLTGKTITLE 120

Query: 842  VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 1021
            VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 121  VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 180



 Score =  277 bits (709), Expect = 1e-74
 Identities = 149/180 (82%), Positives = 150/180 (83%), Gaps = 28/180 (15%)
 Frame = +2

Query: 110 MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
           M IFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MPIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 290 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLE---------------------------- 385
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLE                            
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLESTLHLVLRLRGGMQIFVKTLTGKTITLE 120

Query: 386 VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 565
           VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 121 VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 180



 Score =  208 bits (530), Expect = 7e-54
 Identities = 114/146 (78%), Positives = 114/146 (78%), Gaps = 28/146 (19%)
 Frame = +2

Query: 794  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 973
            M IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MPIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 974  IQKESTLHLVLRL----------------------------RGGMQIFVKTLTGKTITLE 1069
            IQKESTLHLVLRL                            RGGMQIFVKTLTGKTITLE
Sbjct: 61   IQKESTLHLVLRLRGGMQIFVKTLTGKTITLESTLHLVLRLRGGMQIFVKTLTGKTITLE 120

Query: 1070 VEPSDTIENVKAKIQDKEGFPPTTQR 1147
            VEPSDTIENVKAKIQDKEG PP  QR
Sbjct: 121  VEPSDTIENVKAKIQDKEGIPPDQQR 146


>ref|XP_851119.1| PREDICTED: similar to polyubiquitin [Canis familiaris].
          Length = 111

 Score =  164 bits (414), Expect(2) = 2e-40
 Identities = 84/91 (92%), Positives = 87/91 (95%)
 Frame = +2

Query: 293 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 472
           +K +TLHLVL LRGGMQIFVKTLTGKTITLEVEP+DTIENVKAKIQDKEGIPPDQQRLIF
Sbjct: 11  KKCTTLHLVLCLRGGMQIFVKTLTGKTITLEVEPNDTIENVKAKIQDKEGIPPDQQRLIF 70

Query: 473 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 565
           A KQLEDG TLSDYNIQKESTLHLVLRLRGG
Sbjct: 71  ASKQLEDGCTLSDYNIQKESTLHLVLRLRGG 101



 Score =  164 bits (414), Expect(2) = 2e-40
 Identities = 84/91 (92%), Positives = 87/91 (95%)
 Frame = +2

Query: 521 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 700
           +K +TLHLVL LRGGMQIFVKTLTGKTITLEVEP+DTIENVKAKIQDKEGIPPDQQRLIF
Sbjct: 11  KKCTTLHLVLCLRGGMQIFVKTLTGKTITLEVEPNDTIENVKAKIQDKEGIPPDQQRLIF 70

Query: 701 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 793
           A KQLEDG TLSDYNIQKESTLHLVLRLRGG
Sbjct: 71  ASKQLEDGCTLSDYNIQKESTLHLVLRLRGG 101



 Score =  164 bits (414), Expect(2) = 2e-40
 Identities = 84/91 (92%), Positives = 87/91 (95%)
 Frame = +2

Query: 749  QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 928
            +K +TLHLVL LRGGMQIFVKTLTGKTITLEVEP+DTIENVKAKIQDKEGIPPDQQRLIF
Sbjct: 11   KKCTTLHLVLCLRGGMQIFVKTLTGKTITLEVEPNDTIENVKAKIQDKEGIPPDQQRLIF 70

Query: 929  AGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 1021
            A KQLEDG TLSDYNIQKESTLHLVLRLRGG
Sbjct: 71   ASKQLEDGCTLSDYNIQKESTLHLVLRLRGG 101



 Score = 21.6 bits (44), Expect(2) = 2e-40
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +1

Query: 565 DADLREDLDW 594
           +ADL EDLDW
Sbjct: 102 NADLCEDLDW 111



 Score = 21.6 bits (44), Expect(2) = 2e-40
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +1

Query: 793 DADLREDLDW 822
           +ADL EDLDW
Sbjct: 102 NADLCEDLDW 111



 Score = 21.6 bits (44), Expect(2) = 2e-40
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +1

Query: 1021 DADLREDLDW 1050
            +ADL EDLDW
Sbjct: 102  NADLCEDLDW 111



 Score =  142 bits (358), Expect(2) = 5e-34
 Identities = 74/90 (82%), Positives = 77/90 (85%), Gaps = 6/90 (6%)
 Frame = +2

Query: 86  RCCHCHLT------MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFA 247
           +C   HL       MQIFVKTLTGKTITLEVEP+DTIENVK KIQ+KEGIPPDQQRLIFA
Sbjct: 12  KCTTLHLVLCLRGGMQIFVKTLTGKTITLEVEPNDTIENVKAKIQDKEGIPPDQQRLIFA 71

Query: 248 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 337
            KQLEDG TLSDYNIQKESTLHLVLRLRGG
Sbjct: 72  SKQLEDGCTLSDYNIQKESTLHLVLRLRGG 101



 Score = 21.6 bits (44), Expect(2) = 5e-34
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +1

Query: 337 DADLREDLDW 366
           +ADL EDLDW
Sbjct: 102 NADLCEDLDW 111



 Score = 97.4 bits (241), Expect = 2e-20
 Identities = 49/57 (85%), Positives = 52/57 (91%)
 Frame = +2

Query: 977  QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            +K +TLHLVL LRGGMQIFVKTLTGKTITLEVEP+DTIENVKAKIQDKEG PP  QR
Sbjct: 11   KKCTTLHLVLCLRGGMQIFVKTLTGKTITLEVEPNDTIENVKAKIQDKEGIPPDQQR 67


>ref|NP_001121567.1| ubiquitin-60S ribosomal protein L40 precursor [Canis lupus
           familiaris].
          Length = 128

 Score =  151 bits (382), Expect = 1e-36
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +2

Query: 338 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 517
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 518 IQKESTLHLVLRLRGGM 568
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (382), Expect = 1e-36
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +2

Query: 566 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 745
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 746 IQKESTLHLVLRLRGGM 796
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (382), Expect = 1e-36
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +2

Query: 794  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 973
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 974  IQKESTLHLVLRLRGGM 1024
            IQKESTLHLVLRLRGG+
Sbjct: 61   IQKESTLHLVLRLRGGI 77



 Score =  148 bits (374), Expect = 8e-36
 Identities = 74/77 (96%), Positives = 76/77 (98%)
 Frame = +2

Query: 110 MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
           MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 290 IQKESTLHLVLRLRGGM 340
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score = 79.3 bits (194), Expect(2) = 3e-15
 Identities = 39/42 (92%), Positives = 39/42 (92%)
 Frame = +2

Query: 1022 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG PP  QR
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 42



 Score = 21.6 bits (44), Expect(2) = 3e-15
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 1126 LPPDHTKVIFAG 1161
            +PPD  ++IFAG
Sbjct: 36   IPPDQQRLIFAG 47


>ref|NP_001030325.1| hypothetical protein LOC612529 [Canis lupus familiaris].
          Length = 128

 Score =  151 bits (382), Expect = 1e-36
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +2

Query: 338 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 517
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 518 IQKESTLHLVLRLRGGM 568
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (382), Expect = 1e-36
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +2

Query: 566 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 745
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 746 IQKESTLHLVLRLRGGM 796
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (382), Expect = 1e-36
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +2

Query: 794  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 973
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 974  IQKESTLHLVLRLRGGM 1024
            IQKESTLHLVLRLRGG+
Sbjct: 61   IQKESTLHLVLRLRGGI 77



 Score =  148 bits (374), Expect = 8e-36
 Identities = 74/77 (96%), Positives = 76/77 (98%)
 Frame = +2

Query: 110 MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
           MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 290 IQKESTLHLVLRLRGGM 340
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score = 79.3 bits (194), Expect(2) = 3e-15
 Identities = 39/42 (92%), Positives = 39/42 (92%)
 Frame = +2

Query: 1022 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG PP  QR
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 42



 Score = 21.6 bits (44), Expect(2) = 3e-15
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 1126 LPPDHTKVIFAG 1161
            +PPD  ++IFAG
Sbjct: 36   IPPDQQRLIFAG 47


>ref|XP_531829.2| PREDICTED: similar to ubiquitin and ribosomal protein S27a
           precursor [Canis familiaris].
          Length = 228

 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +2

Query: 338 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 517
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 73  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 132

Query: 518 IQKESTLHLVLRLRGG 565
           IQKESTLHLVLRLRGG
Sbjct: 133 IQKESTLHLVLRLRGG 148



 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +2

Query: 566 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 745
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 73  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 132

Query: 746 IQKESTLHLVLRLRGG 793
           IQKESTLHLVLRLRGG
Sbjct: 133 IQKESTLHLVLRLRGG 148



 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +2

Query: 794  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 973
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 73   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 132

Query: 974  IQKESTLHLVLRLRGG 1021
            IQKESTLHLVLRLRGG
Sbjct: 133  IQKESTLHLVLRLRGG 148



 Score =  148 bits (373), Expect = 1e-35
 Identities = 74/76 (97%), Positives = 75/76 (98%)
 Frame = +2

Query: 110 MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
           MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 73  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 132

Query: 290 IQKESTLHLVLRLRGG 337
           IQKESTLHLVLRLRGG
Sbjct: 133 IQKESTLHLVLRLRGG 148



 Score = 79.3 bits (194), Expect(2) = 3e-15
 Identities = 39/42 (92%), Positives = 39/42 (92%)
 Frame = +2

Query: 1022 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG PP  QR
Sbjct: 73   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 114



 Score = 21.6 bits (44), Expect(2) = 3e-15
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 1126 LPPDHTKVIFAG 1161
            +PPD  ++IFAG
Sbjct: 108  IPPDQQRLIFAG 119


>ref|XP_852564.1| PREDICTED: similar to ubiquitin B precursor [Canis familiaris].
          Length = 87

 Score =  147 bits (371), Expect = 2e-35
 Identities = 73/76 (96%), Positives = 75/76 (98%)
 Frame = +2

Query: 338 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 517
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 11  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 70

Query: 518 IQKESTLHLVLRLRGG 565
           IQK+STLHL+L LRGG
Sbjct: 71  IQKKSTLHLILHLRGG 86



 Score =  147 bits (371), Expect = 2e-35
 Identities = 73/76 (96%), Positives = 75/76 (98%)
 Frame = +2

Query: 566 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 745
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 11  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 70

Query: 746 IQKESTLHLVLRLRGG 793
           IQK+STLHL+L LRGG
Sbjct: 71  IQKKSTLHLILHLRGG 86



 Score =  147 bits (371), Expect = 2e-35
 Identities = 73/76 (96%), Positives = 75/76 (98%)
 Frame = +2

Query: 794  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 973
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 11   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 70

Query: 974  IQKESTLHLVLRLRGG 1021
            IQK+STLHL+L LRGG
Sbjct: 71   IQKKSTLHLILHLRGG 86



 Score =  144 bits (363), Expect = 2e-34
 Identities = 71/76 (93%), Positives = 74/76 (97%)
 Frame = +2

Query: 110 MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
           MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 11  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 70

Query: 290 IQKESTLHLVLRLRGG 337
           IQK+STLHL+L LRGG
Sbjct: 71  IQKKSTLHLILHLRGG 86



 Score = 79.3 bits (194), Expect(2) = 3e-15
 Identities = 39/42 (92%), Positives = 39/42 (92%)
 Frame = +2

Query: 1022 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG PP  QR
Sbjct: 11   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 52



 Score = 21.6 bits (44), Expect(2) = 3e-15
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 1126 LPPDHTKVIFAG 1161
            +PPD  ++IFAG
Sbjct: 46   IPPDQQRLIFAG 57


>ref|XP_538142.1| PREDICTED: similar to ubiquitin and ribosomal protein S27a
           precursor [Canis familiaris].
          Length = 161

 Score =  143 bits (361), Expect = 3e-34
 Identities = 73/76 (96%), Positives = 73/76 (96%)
 Frame = +2

Query: 338 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 517
           MQIFVKTLTGKTITLEVEPSDTIEN KAKI DKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 6   MQIFVKTLTGKTITLEVEPSDTIENEKAKILDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 65

Query: 518 IQKESTLHLVLRLRGG 565
           IQKEST HLVLRLRGG
Sbjct: 66  IQKESTPHLVLRLRGG 81



 Score =  143 bits (361), Expect = 3e-34
 Identities = 73/76 (96%), Positives = 73/76 (96%)
 Frame = +2

Query: 566 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 745
           MQIFVKTLTGKTITLEVEPSDTIEN KAKI DKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 6   MQIFVKTLTGKTITLEVEPSDTIENEKAKILDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 65

Query: 746 IQKESTLHLVLRLRGG 793
           IQKEST HLVLRLRGG
Sbjct: 66  IQKESTPHLVLRLRGG 81



 Score =  143 bits (361), Expect = 3e-34
 Identities = 73/76 (96%), Positives = 73/76 (96%)
 Frame = +2

Query: 794  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 973
            MQIFVKTLTGKTITLEVEPSDTIEN KAKI DKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 6    MQIFVKTLTGKTITLEVEPSDTIENEKAKILDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 65

Query: 974  IQKESTLHLVLRLRGG 1021
            IQKEST HLVLRLRGG
Sbjct: 66   IQKESTPHLVLRLRGG 81



 Score =  140 bits (353), Expect = 2e-33
 Identities = 71/76 (93%), Positives = 72/76 (94%)
 Frame = +2

Query: 110 MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
           MQIFVKTLTGKTITLEVEPSDTIEN K KI +KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 6   MQIFVKTLTGKTITLEVEPSDTIENEKAKILDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 65

Query: 290 IQKESTLHLVLRLRGG 337
           IQKEST HLVLRLRGG
Sbjct: 66  IQKESTPHLVLRLRGG 81



 Score = 74.3 bits (181), Expect(2) = 8e-14
 Identities = 37/42 (88%), Positives = 37/42 (88%)
 Frame = +2

Query: 1022 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            MQIFVKTLTGKTITLEVEPSDTIEN KAKI DKEG PP  QR
Sbjct: 6    MQIFVKTLTGKTITLEVEPSDTIENEKAKILDKEGIPPDQQR 47



 Score = 21.6 bits (44), Expect(2) = 8e-14
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 1126 LPPDHTKVIFAG 1161
            +PPD  ++IFAG
Sbjct: 41   IPPDQQRLIFAG 52


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,922,859
Number of extensions: 1300858
Number of successful extensions: 5745
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 5674
Number of HSP's successfully gapped: 128
Length of query: 387
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 282
Effective length of database: 15,374,224
Effective search space: 4335531168
Effective search space used: 4335531168
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001761
         (1163 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_066289.2| polyubiquitin-C [Homo sapiens].                      663   0.0  
Alignment   gi|NP_061828.1| polyubiquitin-B precursor [Homo sapiens].            444   e-125
Alignment   gi|NP_003324.1| ubiquitin-60S ribosomal protein L40 precursor [...   151   1e-36
Alignment   gi|NP_001029102.1| ubiquitin-60S ribosomal protein L40 precurso...   151   1e-36
Alignment   gi|NP_001170884.1| ubiquitin-40S ribosomal protein S27a precurs...   151   1e-36
Alignment   gi|NP_002945.1| ubiquitin-40S ribosomal protein S27a precursor ...   151   1e-36
Alignment   gi|NP_001129064.1| ubiquitin-40S ribosomal protein S27a precurs...   151   1e-36
Alignment   gi|NP_006147.1| NEDD8 precursor [Homo sapiens].                       97   3e-20
Alignment   gi|NP_006389.2| ubiquitin D [Homo sapiens].                           84   2e-16
Alignment   gi|NP_005092.1| ubiquitin-like protein ISG15 precursor [Homo sa...    77   3e-14

>ref|NP_066289.2| polyubiquitin-C [Homo sapiens].
          Length = 685

 Score =  663 bits (1710), Expect = 0.0
 Identities = 341/346 (98%), Positives = 342/346 (98%)
 Frame = +2

Query: 110  MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
            MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 229  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288

Query: 290  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 469
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 289  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 348

Query: 470  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 649
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 349  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 408

Query: 650  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 829
            KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 409  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 468

Query: 830  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 1009
            ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
Sbjct: 469  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 528

Query: 1010 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG PP  QR
Sbjct: 529  LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 574



 Score =  663 bits (1710), Expect = 0.0
 Identities = 341/346 (98%), Positives = 342/346 (98%)
 Frame = +2

Query: 110  MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
            MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 305  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364

Query: 290  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 469
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 365  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 424

Query: 470  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 649
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 425  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 484

Query: 650  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 829
            KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 485  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 544

Query: 830  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 1009
            ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
Sbjct: 545  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 604

Query: 1010 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG PP  QR
Sbjct: 605  LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 650



 Score =  660 bits (1702), Expect = 0.0
 Identities = 340/346 (98%), Positives = 341/346 (98%)
 Frame = +2

Query: 110  MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
            MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 290  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 469
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61   IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 470  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 649
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 650  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 829
            KIQDKEGIP DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181  KIQDKEGIPSDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 830  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 1009
            ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
Sbjct: 241  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 300

Query: 1010 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG PP  QR
Sbjct: 301  LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 346



 Score =  660 bits (1702), Expect = 0.0
 Identities = 340/346 (98%), Positives = 341/346 (98%)
 Frame = +2

Query: 110  MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
            MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 77   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136

Query: 290  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 469
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP DQQRLI
Sbjct: 137  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPSDQQRLI 196

Query: 470  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 649
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 197  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 256

Query: 650  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 829
            KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 257  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 316

Query: 830  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 1009
            ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
Sbjct: 317  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 376

Query: 1010 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG PP  QR
Sbjct: 377  LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 422



 Score =  660 bits (1702), Expect = 0.0
 Identities = 340/346 (98%), Positives = 341/346 (98%)
 Frame = +2

Query: 110  MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
            MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIP DQQRLIFAGKQLEDGRTLSDYN
Sbjct: 153  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPSDQQRLIFAGKQLEDGRTLSDYN 212

Query: 290  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 469
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 213  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 272

Query: 470  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 649
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 273  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 332

Query: 650  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 829
            KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 333  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 392

Query: 830  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 1009
            ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
Sbjct: 393  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 452

Query: 1010 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG PP  QR
Sbjct: 453  LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 498



 Score =  588 bits (1517), Expect = e-168
 Identities = 302/305 (99%), Positives = 304/305 (99%)
 Frame = +2

Query: 110  MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
            MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 381  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440

Query: 290  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 469
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 441  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 500

Query: 470  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 649
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 501  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 560

Query: 650  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 829
            KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 561  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 620

Query: 830  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 1009
            ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
Sbjct: 621  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 680

Query: 1010 LRGGM 1024
            LRGG+
Sbjct: 681  LRGGV 685


>ref|NP_061828.1| polyubiquitin-B precursor [Homo sapiens].
          Length = 229

 Score =  444 bits (1143), Expect = e-125
 Identities = 228/228 (100%), Positives = 228/228 (100%)
 Frame = +2

Query: 338  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 517
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 518  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 697
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61   IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 698  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 877
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 878  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 1021
            KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 181  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228



 Score =  441 bits (1135), Expect = e-124
 Identities = 226/228 (99%), Positives = 227/228 (99%)
 Frame = +2

Query: 110 MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
           MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 290 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 469
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 470 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 649
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 650 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 793
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228



 Score =  372 bits (956), Expect = e-103
 Identities = 191/194 (98%), Positives = 191/194 (98%)
 Frame = +2

Query: 566  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 745
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 746  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 925
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61   IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 926  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 1105
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 1106 KIQDKEGFPPTTQR 1147
            KIQDKEG PP  QR
Sbjct: 181  KIQDKEGIPPDQQR 194


>ref|NP_003324.1| ubiquitin-60S ribosomal protein L40 precursor [Homo sapiens].
          Length = 128

 Score =  151 bits (382), Expect = 1e-36
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +2

Query: 338 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 517
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 518 IQKESTLHLVLRLRGGM 568
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (382), Expect = 1e-36
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +2

Query: 566 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 745
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 746 IQKESTLHLVLRLRGGM 796
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (382), Expect = 1e-36
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +2

Query: 794  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 973
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 974  IQKESTLHLVLRLRGGM 1024
            IQKESTLHLVLRLRGG+
Sbjct: 61   IQKESTLHLVLRLRGGI 77



 Score =  148 bits (374), Expect = 8e-36
 Identities = 74/77 (96%), Positives = 76/77 (98%)
 Frame = +2

Query: 110 MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
           MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 290 IQKESTLHLVLRLRGGM 340
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score = 79.3 bits (194), Expect(2) = 3e-15
 Identities = 39/42 (92%), Positives = 39/42 (92%)
 Frame = +2

Query: 1022 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG PP  QR
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 42



 Score = 21.6 bits (44), Expect(2) = 3e-15
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 1126 LPPDHTKVIFAG 1161
            +PPD  ++IFAG
Sbjct: 36   IPPDQQRLIFAG 47


>ref|NP_001029102.1| ubiquitin-60S ribosomal protein L40 precursor [Homo sapiens].
          Length = 128

 Score =  151 bits (382), Expect = 1e-36
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +2

Query: 338 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 517
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 518 IQKESTLHLVLRLRGGM 568
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (382), Expect = 1e-36
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +2

Query: 566 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 745
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 746 IQKESTLHLVLRLRGGM 796
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (382), Expect = 1e-36
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +2

Query: 794  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 973
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 974  IQKESTLHLVLRLRGGM 1024
            IQKESTLHLVLRLRGG+
Sbjct: 61   IQKESTLHLVLRLRGGI 77



 Score =  148 bits (374), Expect = 8e-36
 Identities = 74/77 (96%), Positives = 76/77 (98%)
 Frame = +2

Query: 110 MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
           MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 290 IQKESTLHLVLRLRGGM 340
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score = 79.3 bits (194), Expect(2) = 3e-15
 Identities = 39/42 (92%), Positives = 39/42 (92%)
 Frame = +2

Query: 1022 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG PP  QR
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 42



 Score = 21.6 bits (44), Expect(2) = 3e-15
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 1126 LPPDHTKVIFAG 1161
            +PPD  ++IFAG
Sbjct: 36   IPPDQQRLIFAG 47


>ref|NP_001170884.1| ubiquitin-40S ribosomal protein S27a precursor [Homo sapiens].
          Length = 156

 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +2

Query: 338 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 517
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 518 IQKESTLHLVLRLRGG 565
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +2

Query: 566 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 745
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 746 IQKESTLHLVLRLRGG 793
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +2

Query: 794  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 973
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 974  IQKESTLHLVLRLRGG 1021
            IQKESTLHLVLRLRGG
Sbjct: 61   IQKESTLHLVLRLRGG 76



 Score =  148 bits (373), Expect = 1e-35
 Identities = 74/76 (97%), Positives = 75/76 (98%)
 Frame = +2

Query: 110 MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
           MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 290 IQKESTLHLVLRLRGG 337
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score = 79.3 bits (194), Expect(2) = 3e-15
 Identities = 39/42 (92%), Positives = 39/42 (92%)
 Frame = +2

Query: 1022 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG PP  QR
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 42



 Score = 21.6 bits (44), Expect(2) = 3e-15
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 1126 LPPDHTKVIFAG 1161
            +PPD  ++IFAG
Sbjct: 36   IPPDQQRLIFAG 47


>ref|NP_002945.1| ubiquitin-40S ribosomal protein S27a precursor [Homo sapiens].
          Length = 156

 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +2

Query: 338 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 517
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 518 IQKESTLHLVLRLRGG 565
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +2

Query: 566 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 745
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 746 IQKESTLHLVLRLRGG 793
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +2

Query: 794  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 973
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 974  IQKESTLHLVLRLRGG 1021
            IQKESTLHLVLRLRGG
Sbjct: 61   IQKESTLHLVLRLRGG 76



 Score =  148 bits (373), Expect = 1e-35
 Identities = 74/76 (97%), Positives = 75/76 (98%)
 Frame = +2

Query: 110 MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
           MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 290 IQKESTLHLVLRLRGG 337
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score = 79.3 bits (194), Expect(2) = 3e-15
 Identities = 39/42 (92%), Positives = 39/42 (92%)
 Frame = +2

Query: 1022 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG PP  QR
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 42



 Score = 21.6 bits (44), Expect(2) = 3e-15
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 1126 LPPDHTKVIFAG 1161
            +PPD  ++IFAG
Sbjct: 36   IPPDQQRLIFAG 47


>ref|NP_001129064.1| ubiquitin-40S ribosomal protein S27a precursor [Homo sapiens].
          Length = 156

 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +2

Query: 338 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 517
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 518 IQKESTLHLVLRLRGG 565
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +2

Query: 566 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 745
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 746 IQKESTLHLVLRLRGG 793
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +2

Query: 794  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 973
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 974  IQKESTLHLVLRLRGG 1021
            IQKESTLHLVLRLRGG
Sbjct: 61   IQKESTLHLVLRLRGG 76



 Score =  148 bits (373), Expect = 1e-35
 Identities = 74/76 (97%), Positives = 75/76 (98%)
 Frame = +2

Query: 110 MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
           MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 290 IQKESTLHLVLRLRGG 337
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score = 79.3 bits (194), Expect(2) = 3e-15
 Identities = 39/42 (92%), Positives = 39/42 (92%)
 Frame = +2

Query: 1022 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG PP  QR
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 42



 Score = 21.6 bits (44), Expect(2) = 3e-15
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 1126 LPPDHTKVIFAG 1161
            +PPD  ++IFAG
Sbjct: 36   IPPDQQRLIFAG 47


>ref|NP_006147.1| NEDD8 precursor [Homo sapiens].
          Length = 81

 Score = 97.1 bits (240), Expect = 3e-20
 Identities = 45/76 (59%), Positives = 59/76 (77%)
 Frame = +2

Query: 110 MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
           M I VKTLTGK I +++EP+D +E +K +++EKEGIPP QQRLI++GKQ+ D +T +DY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 290 IQKESTLHLVLRLRGG 337
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76



 Score = 96.3 bits (238), Expect = 5e-20
 Identities = 44/76 (57%), Positives = 59/76 (77%)
 Frame = +2

Query: 338 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 517
           M I VKTLTGK I +++EP+D +E +K ++++KEGIPP QQRLI++GKQ+ D +T +DY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 518 IQKESTLHLVLRLRGG 565
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76



 Score = 96.3 bits (238), Expect = 5e-20
 Identities = 44/76 (57%), Positives = 59/76 (77%)
 Frame = +2

Query: 566 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 745
           M I VKTLTGK I +++EP+D +E +K ++++KEGIPP QQRLI++GKQ+ D +T +DY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 746 IQKESTLHLVLRLRGG 793
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76



 Score = 96.3 bits (238), Expect = 5e-20
 Identities = 44/76 (57%), Positives = 59/76 (77%)
 Frame = +2

Query: 794  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 973
            M I VKTLTGK I +++EP+D +E +K ++++KEGIPP QQRLI++GKQ+ D +T +DY 
Sbjct: 1    MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 974  IQKESTLHLVLRLRGG 1021
            I   S LHLVL LRGG
Sbjct: 61   ILGGSVLHLVLALRGG 76



 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 22/42 (52%), Positives = 32/42 (76%)
 Frame = +2

Query: 1022 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            M I VKTLTGK I +++EP+D +E +K ++++KEG PP  QR
Sbjct: 1    MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQR 42


>ref|NP_006389.2| ubiquitin D [Homo sapiens].
          Length = 165

 Score = 84.3 bits (207), Expect = 2e-16
 Identities = 50/156 (32%), Positives = 83/156 (53%), Gaps = 6/156 (3%)
 Frame = +2

Query: 344 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 523
           + V++     +T +  P D+++ +K  ++ K  +P   Q L+   K L+  R+LS Y I 
Sbjct: 10  VHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGID 69

Query: 524 KESTLHLVLRL----RGGMQIFVKTL--TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 685
           KE T+HL L++       + +F+       K   L+V  S ++  VKA I+ K GI P+ 
Sbjct: 70  KEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIETKTGIIPET 129

Query: 686 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 793
           Q +   GK+LEDG+ ++DY I+K + L L     GG
Sbjct: 130 QIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG 165



 Score = 84.3 bits (207), Expect = 2e-16
 Identities = 50/156 (32%), Positives = 83/156 (53%), Gaps = 6/156 (3%)
 Frame = +2

Query: 572  IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 751
            + V++     +T +  P D+++ +K  ++ K  +P   Q L+   K L+  R+LS Y I 
Sbjct: 10   VHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGID 69

Query: 752  KESTLHLVLRL----RGGMQIFVKTL--TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 913
            KE T+HL L++       + +F+       K   L+V  S ++  VKA I+ K GI P+ 
Sbjct: 70   KEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIETKTGIIPET 129

Query: 914  QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 1021
            Q +   GK+LEDG+ ++DY I+K + L L     GG
Sbjct: 130  QIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG 165



 Score = 84.0 bits (206), Expect = 2e-16
 Identities = 50/156 (32%), Positives = 83/156 (53%), Gaps = 6/156 (3%)
 Frame = +2

Query: 116 IFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 295
           + V++     +T +  P D+++ +K  ++ K  +P   Q L+   K L+  R+LS Y I 
Sbjct: 10  VHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGID 69

Query: 296 KESTLHLVLRL----RGGMQIFVKTL--TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 457
           KE T+HL L++       + +F+       K   L+V  S ++  VKA I+ K GI P+ 
Sbjct: 70  KEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIETKTGIIPET 129

Query: 458 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 565
           Q +   GK+LEDG+ ++DY I+K + L L     GG
Sbjct: 130 QIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG 165


>ref|NP_005092.1| ubiquitin-like protein ISG15 precursor [Homo sapiens].
          Length = 165

 Score = 77.0 bits (188), Expect = 3e-14
 Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 3/156 (1%)
 Frame = +2

Query: 335 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLS 508
           G  + VK L G    + +  S ++  +KA+I  K G+   QQRL    +G  L+D   L+
Sbjct: 2   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61

Query: 509 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 685
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 62  SQGLGPGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121

Query: 686 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 793
             L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157



 Score = 77.0 bits (188), Expect = 3e-14
 Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 3/156 (1%)
 Frame = +2

Query: 563  GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLS 736
            G  + VK L G    + +  S ++  +KA+I  K G+   QQRL    +G  L+D   L+
Sbjct: 2    GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61

Query: 737  DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 913
               +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 62   SQGLGPGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121

Query: 914  QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 1021
              L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct: 122  FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157



 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 49/151 (32%), Positives = 80/151 (52%), Gaps = 3/151 (1%)
 Frame = +2

Query: 122 VKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIF--AGKQLEDGRTLSDYNIQ 295
           VK L G    + +  S ++  +K +I +K G+   QQRL    +G  L+D   L+   + 
Sbjct: 7   VKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLG 66

Query: 296 KESTLHLVL-RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 472
             ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F
Sbjct: 67  PGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF 126

Query: 473 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 565
            GK LED   L +Y ++  ST+ + LRLRGG
Sbjct: 127 EGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157



 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 32/94 (34%), Positives = 50/94 (53%)
 Frame = +2

Query: 56  PGVCLRFFCDRCCHCHLTMQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQR 235
           PG  +    D+C      + I V+   G++ T EV  + T+ ++K ++   EG+  D   
Sbjct: 67  PGSTVLLVVDKCDE---PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFW 123

Query: 236 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 337
           L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct: 124 LTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,886,909
Number of extensions: 1271850
Number of successful extensions: 5508
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 5467
Number of HSP's successfully gapped: 101
Length of query: 387
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 283
Effective length of database: 14,868,908
Effective search space: 4207900964
Effective search space used: 4207900964
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001761
         (1163 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_062613.3| polyubiquitin-C [Mus musculus].                      663   0.0  
Alignment   gi|NP_035794.1| polyubiquitin-B [Mus musculus].                      588   e-168
Alignment   gi|NP_063936.1| ubiquitin-60S ribosomal protein L40 [Mus muscul...   151   8e-37
Alignment   gi|NP_001029037.1| ubiquitin-40S ribosomal protein S27a precurs...   151   1e-36
Alignment   gi|NP_077239.1| ubiquitin-40S ribosomal protein S27a precursor ...   151   1e-36
Alignment   gi|XP_985698.2| PREDICTED: ubiquitin-like protein ISG15-like [M...   150   1e-36
Alignment   gi|XP_003086791.1| PREDICTED: ubiquitin-like protein ISG15-like...   150   1e-36
Alignment   gi|XP_003086579.1| PREDICTED: hypothetical protein LOC667035 [M...   149   4e-36
Alignment   gi|XP_001002242.1| PREDICTED: hypothetical protein LOC667035 [M...   148   7e-36
Alignment   gi|XP_126432.6| PREDICTED: hypothetical protein LOC216818 [Mus ...   108   1e-23

>ref|NP_062613.3| polyubiquitin-C [Mus musculus].
          Length = 734

 Score =  663 bits (1710), Expect = 0.0
 Identities = 341/346 (98%), Positives = 342/346 (98%)
 Frame = +2

Query: 110  MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
            MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 290  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 469
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61   IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 470  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 649
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 650  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 829
            KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 830  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 1009
            ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
Sbjct: 241  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 300

Query: 1010 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG PP  QR
Sbjct: 301  LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 346



 Score =  663 bits (1710), Expect = 0.0
 Identities = 341/346 (98%), Positives = 342/346 (98%)
 Frame = +2

Query: 110  MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
            MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 77   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136

Query: 290  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 469
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 137  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 196

Query: 470  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 649
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 197  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 256

Query: 650  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 829
            KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 257  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 316

Query: 830  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 1009
            ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
Sbjct: 317  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 376

Query: 1010 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG PP  QR
Sbjct: 377  LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 422



 Score =  663 bits (1710), Expect = 0.0
 Identities = 341/346 (98%), Positives = 342/346 (98%)
 Frame = +2

Query: 110  MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
            MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 153  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212

Query: 290  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 469
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 213  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 272

Query: 470  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 649
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 273  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 332

Query: 650  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 829
            KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 333  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 392

Query: 830  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 1009
            ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
Sbjct: 393  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 452

Query: 1010 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG PP  QR
Sbjct: 453  LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 498



 Score =  663 bits (1710), Expect = 0.0
 Identities = 341/346 (98%), Positives = 342/346 (98%)
 Frame = +2

Query: 110  MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
            MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 229  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288

Query: 290  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 469
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 289  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 348

Query: 470  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 649
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 349  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 408

Query: 650  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 829
            KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 409  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 468

Query: 830  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 1009
            ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
Sbjct: 469  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 528

Query: 1010 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG PP  QR
Sbjct: 529  LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 574



 Score =  663 bits (1710), Expect = 0.0
 Identities = 341/346 (98%), Positives = 342/346 (98%)
 Frame = +2

Query: 110  MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
            MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 305  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364

Query: 290  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 469
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 365  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 424

Query: 470  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 649
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 425  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 484

Query: 650  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 829
            KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 485  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 544

Query: 830  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 1009
            ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
Sbjct: 545  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 604

Query: 1010 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG PP  QR
Sbjct: 605  LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 650



 Score =  631 bits (1628), Expect = 0.0
 Identities = 329/350 (94%), Positives = 335/350 (95%)
 Frame = +2

Query: 110  MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
            MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 381  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440

Query: 290  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 469
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 441  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 500

Query: 470  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 649
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 501  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 560

Query: 650  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 829
            KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 561  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 620

Query: 830  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 1009
            ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
Sbjct: 621  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 680

Query: 1010 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGFPPTTQR*SLP 1159
            LRGGMQIFVKTLTGKTITL+VEPS T + VK   +D+  F  T  + S P
Sbjct: 681  LRGGMQIFVKTLTGKTITLDVEPSVTTKKVKQ--EDRRTFLTTVSKKSPP 728


>ref|NP_035794.1| polyubiquitin-B [Mus musculus].
          Length = 305

 Score =  588 bits (1516), Expect = e-168
 Identities = 302/304 (99%), Positives = 303/304 (99%)
 Frame = +2

Query: 110  MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
            MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 290  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 469
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61   IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 470  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 649
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 650  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 829
            KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 830  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 1009
            ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
Sbjct: 241  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 300

Query: 1010 LRGG 1021
            LRGG
Sbjct: 301  LRGG 304



 Score =  519 bits (1337), Expect = e-147
 Identities = 267/270 (98%), Positives = 267/270 (98%)
 Frame = +2

Query: 338  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 517
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 518  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 697
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61   IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 698  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 877
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 878  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 1057
            KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 1058 ITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            ITLEVEPSDTIENVKAKIQDKEG PP  QR
Sbjct: 241  ITLEVEPSDTIENVKAKIQDKEGIPPDQQR 270


>ref|NP_063936.1| ubiquitin-60S ribosomal protein L40 [Mus musculus].
          Length = 128

 Score =  151 bits (382), Expect = 8e-37
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +2

Query: 338 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 517
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 518 IQKESTLHLVLRLRGGM 568
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (382), Expect = 8e-37
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +2

Query: 566 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 745
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 746 IQKESTLHLVLRLRGGM 796
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (382), Expect = 8e-37
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +2

Query: 794  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 973
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 974  IQKESTLHLVLRLRGGM 1024
            IQKESTLHLVLRLRGG+
Sbjct: 61   IQKESTLHLVLRLRGGI 77



 Score =  148 bits (374), Expect = 7e-36
 Identities = 74/77 (96%), Positives = 76/77 (98%)
 Frame = +2

Query: 110 MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
           MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 290 IQKESTLHLVLRLRGGM 340
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score = 79.3 bits (194), Expect(2) = 2e-15
 Identities = 39/42 (92%), Positives = 39/42 (92%)
 Frame = +2

Query: 1022 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG PP  QR
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 42



 Score = 21.6 bits (44), Expect(2) = 2e-15
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 1126 LPPDHTKVIFAG 1161
            +PPD  ++IFAG
Sbjct: 36   IPPDQQRLIFAG 47


>ref|NP_001029037.1| ubiquitin-40S ribosomal protein S27a precursor [Mus musculus].
          Length = 156

 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +2

Query: 338 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 517
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 518 IQKESTLHLVLRLRGG 565
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +2

Query: 566 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 745
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 746 IQKESTLHLVLRLRGG 793
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +2

Query: 794  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 973
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 974  IQKESTLHLVLRLRGG 1021
            IQKESTLHLVLRLRGG
Sbjct: 61   IQKESTLHLVLRLRGG 76



 Score =  148 bits (373), Expect = 9e-36
 Identities = 74/76 (97%), Positives = 75/76 (98%)
 Frame = +2

Query: 110 MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
           MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 290 IQKESTLHLVLRLRGG 337
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score = 79.3 bits (194), Expect(2) = 2e-15
 Identities = 39/42 (92%), Positives = 39/42 (92%)
 Frame = +2

Query: 1022 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG PP  QR
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 42



 Score = 21.6 bits (44), Expect(2) = 2e-15
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 1126 LPPDHTKVIFAG 1161
            +PPD  ++IFAG
Sbjct: 36   IPPDQQRLIFAG 47


>ref|NP_077239.1| ubiquitin-40S ribosomal protein S27a precursor [Mus musculus].
          Length = 156

 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +2

Query: 338 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 517
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 518 IQKESTLHLVLRLRGG 565
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +2

Query: 566 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 745
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 746 IQKESTLHLVLRLRGG 793
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +2

Query: 794  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 973
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 974  IQKESTLHLVLRLRGG 1021
            IQKESTLHLVLRLRGG
Sbjct: 61   IQKESTLHLVLRLRGG 76



 Score =  148 bits (373), Expect = 9e-36
 Identities = 74/76 (97%), Positives = 75/76 (98%)
 Frame = +2

Query: 110 MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
           MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 290 IQKESTLHLVLRLRGG 337
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score = 79.3 bits (194), Expect(2) = 2e-15
 Identities = 39/42 (92%), Positives = 39/42 (92%)
 Frame = +2

Query: 1022 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG PP  QR
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 42



 Score = 21.6 bits (44), Expect(2) = 2e-15
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 1126 LPPDHTKVIFAG 1161
            +PPD  ++IFAG
Sbjct: 36   IPPDQQRLIFAG 47


>ref|XP_985698.2| PREDICTED: ubiquitin-like protein ISG15-like [Mus musculus].
          Length = 203

 Score =  150 bits (380), Expect = 1e-36
 Identities = 81/106 (76%), Positives = 90/106 (84%), Gaps = 6/106 (5%)
 Frame = +2

Query: 269 RTLSDYNIQKESTLHLVLRLRGG------MQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 430
           R +    ++++  L L L+ RGG      +QIFVKTLTGKTITLEVEPSDTI+NVKAKIQ
Sbjct: 50  RCVQQPKVKRKDRLSLSLQ-RGGRAADANVQIFVKTLTGKTITLEVEPSDTIKNVKAKIQ 108

Query: 431 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 568
           DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+
Sbjct: 109 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 154



 Score =  150 bits (380), Expect = 1e-36
 Identities = 81/106 (76%), Positives = 90/106 (84%), Gaps = 6/106 (5%)
 Frame = +2

Query: 497 RTLSDYNIQKESTLHLVLRLRGG------MQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 658
           R +    ++++  L L L+ RGG      +QIFVKTLTGKTITLEVEPSDTI+NVKAKIQ
Sbjct: 50  RCVQQPKVKRKDRLSLSLQ-RGGRAADANVQIFVKTLTGKTITLEVEPSDTIKNVKAKIQ 108

Query: 659 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 796
           DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+
Sbjct: 109 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 154



 Score =  150 bits (380), Expect = 1e-36
 Identities = 81/106 (76%), Positives = 90/106 (84%), Gaps = 6/106 (5%)
 Frame = +2

Query: 725  RTLSDYNIQKESTLHLVLRLRGG------MQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 886
            R +    ++++  L L L+ RGG      +QIFVKTLTGKTITLEVEPSDTI+NVKAKIQ
Sbjct: 50   RCVQQPKVKRKDRLSLSLQ-RGGRAADANVQIFVKTLTGKTITLEVEPSDTIKNVKAKIQ 108

Query: 887  DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 1024
            DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+
Sbjct: 109  DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 154



 Score =  145 bits (366), Expect = 6e-35
 Identities = 72/77 (93%), Positives = 76/77 (98%)
 Frame = +2

Query: 110 MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
           +QIFVKTLTGKTITLEVEPSDTI+NVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 78  VQIFVKTLTGKTITLEVEPSDTIKNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 137

Query: 290 IQKESTLHLVLRLRGGM 340
           IQKESTLHLVLRLRGG+
Sbjct: 138 IQKESTLHLVLRLRGGI 154



 Score = 78.6 bits (192), Expect(2) = 4e-15
 Identities = 44/71 (61%), Positives = 52/71 (73%), Gaps = 6/71 (8%)
 Frame = +2

Query: 953  RTLSDYNIQKESTLHLVLRLRGG------MQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 1114
            R +    ++++  L L L+ RGG      +QIFVKTLTGKTITLEVEPSDTI+NVKAKIQ
Sbjct: 50   RCVQQPKVKRKDRLSLSLQ-RGGRAADANVQIFVKTLTGKTITLEVEPSDTIKNVKAKIQ 108

Query: 1115 DKEGFPPTTQR 1147
            DKEG PP  QR
Sbjct: 109  DKEGIPPDQQR 119



 Score = 21.6 bits (44), Expect(2) = 4e-15
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 1126 LPPDHTKVIFAG 1161
            +PPD  ++IFAG
Sbjct: 113  IPPDQQRLIFAG 124


>ref|XP_003086791.1| PREDICTED: ubiquitin-like protein ISG15-like [Mus musculus].
          Length = 203

 Score =  150 bits (380), Expect = 1e-36
 Identities = 81/106 (76%), Positives = 90/106 (84%), Gaps = 6/106 (5%)
 Frame = +2

Query: 269 RTLSDYNIQKESTLHLVLRLRGG------MQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 430
           R +    ++++  L L L+ RGG      +QIFVKTLTGKTITLEVEPSDTI+NVKAKIQ
Sbjct: 50  RCVQQPKVKRKDRLSLSLQ-RGGRAADANVQIFVKTLTGKTITLEVEPSDTIKNVKAKIQ 108

Query: 431 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 568
           DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+
Sbjct: 109 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 154



 Score =  150 bits (380), Expect = 1e-36
 Identities = 81/106 (76%), Positives = 90/106 (84%), Gaps = 6/106 (5%)
 Frame = +2

Query: 497 RTLSDYNIQKESTLHLVLRLRGG------MQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 658
           R +    ++++  L L L+ RGG      +QIFVKTLTGKTITLEVEPSDTI+NVKAKIQ
Sbjct: 50  RCVQQPKVKRKDRLSLSLQ-RGGRAADANVQIFVKTLTGKTITLEVEPSDTIKNVKAKIQ 108

Query: 659 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 796
           DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+
Sbjct: 109 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 154



 Score =  150 bits (380), Expect = 1e-36
 Identities = 81/106 (76%), Positives = 90/106 (84%), Gaps = 6/106 (5%)
 Frame = +2

Query: 725  RTLSDYNIQKESTLHLVLRLRGG------MQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 886
            R +    ++++  L L L+ RGG      +QIFVKTLTGKTITLEVEPSDTI+NVKAKIQ
Sbjct: 50   RCVQQPKVKRKDRLSLSLQ-RGGRAADANVQIFVKTLTGKTITLEVEPSDTIKNVKAKIQ 108

Query: 887  DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 1024
            DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+
Sbjct: 109  DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 154



 Score =  145 bits (366), Expect = 6e-35
 Identities = 72/77 (93%), Positives = 76/77 (98%)
 Frame = +2

Query: 110 MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
           +QIFVKTLTGKTITLEVEPSDTI+NVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 78  VQIFVKTLTGKTITLEVEPSDTIKNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 137

Query: 290 IQKESTLHLVLRLRGGM 340
           IQKESTLHLVLRLRGG+
Sbjct: 138 IQKESTLHLVLRLRGGI 154



 Score = 78.6 bits (192), Expect(2) = 4e-15
 Identities = 44/71 (61%), Positives = 52/71 (73%), Gaps = 6/71 (8%)
 Frame = +2

Query: 953  RTLSDYNIQKESTLHLVLRLRGG------MQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 1114
            R +    ++++  L L L+ RGG      +QIFVKTLTGKTITLEVEPSDTI+NVKAKIQ
Sbjct: 50   RCVQQPKVKRKDRLSLSLQ-RGGRAADANVQIFVKTLTGKTITLEVEPSDTIKNVKAKIQ 108

Query: 1115 DKEGFPPTTQR 1147
            DKEG PP  QR
Sbjct: 109  DKEGIPPDQQR 119



 Score = 21.6 bits (44), Expect(2) = 4e-15
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 1126 LPPDHTKVIFAG 1161
            +PPD  ++IFAG
Sbjct: 113  IPPDQQRLIFAG 124


>ref|XP_003086579.1| PREDICTED: hypothetical protein LOC667035 [Mus musculus].
          Length = 155

 Score =  149 bits (376), Expect = 4e-36
 Identities = 77/85 (90%), Positives = 79/85 (92%)
 Frame = +2

Query: 338 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 517
           MQIFVKTLTGKTITLEVEPSDTI NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIGNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 518 IQKESTLHLVLRLRGGMQIFVKTLT 592
           IQKESTLHLVLRLRGG +   K+ T
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKSYT 85



 Score =  149 bits (376), Expect = 4e-36
 Identities = 77/85 (90%), Positives = 79/85 (92%)
 Frame = +2

Query: 566 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 745
           MQIFVKTLTGKTITLEVEPSDTI NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIGNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 746 IQKESTLHLVLRLRGGMQIFVKTLT 820
           IQKESTLHLVLRLRGG +   K+ T
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKSYT 85



 Score =  149 bits (376), Expect = 4e-36
 Identities = 77/85 (90%), Positives = 79/85 (92%)
 Frame = +2

Query: 794  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 973
            MQIFVKTLTGKTITLEVEPSDTI NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIGNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 974  IQKESTLHLVLRLRGGMQIFVKTLT 1048
            IQKESTLHLVLRLRGG +   K+ T
Sbjct: 61   IQKESTLHLVLRLRGGAKKRKKSYT 85



 Score =  146 bits (368), Expect = 3e-35
 Identities = 75/85 (88%), Positives = 78/85 (91%)
 Frame = +2

Query: 110 MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
           MQIFVKTLTGKTITLEVEPSDTI NVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIGNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 290 IQKESTLHLVLRLRGGMQIFVKTLT 364
           IQKESTLHLVLRLRGG +   K+ T
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKSYT 85



 Score = 76.6 bits (187), Expect(2) = 1e-14
 Identities = 38/42 (90%), Positives = 38/42 (90%)
 Frame = +2

Query: 1022 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            MQIFVKTLTGKTITLEVEPSDTI NVKAKIQDKEG PP  QR
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIGNVKAKIQDKEGIPPDQQR 42



 Score = 21.6 bits (44), Expect(2) = 1e-14
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 1126 LPPDHTKVIFAG 1161
            +PPD  ++IFAG
Sbjct: 36   IPPDQQRLIFAG 47


>ref|XP_001002242.1| PREDICTED: hypothetical protein LOC667035 [Mus musculus].
          Length = 156

 Score =  148 bits (374), Expect = 7e-36
 Identities = 75/76 (98%), Positives = 75/76 (98%)
 Frame = +2

Query: 338 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 517
           MQIFVKTLTGKTITLEVEPSDTI NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIGNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 518 IQKESTLHLVLRLRGG 565
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  148 bits (374), Expect = 7e-36
 Identities = 75/76 (98%), Positives = 75/76 (98%)
 Frame = +2

Query: 566 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 745
           MQIFVKTLTGKTITLEVEPSDTI NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIGNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 746 IQKESTLHLVLRLRGG 793
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  148 bits (374), Expect = 7e-36
 Identities = 75/76 (98%), Positives = 75/76 (98%)
 Frame = +2

Query: 794  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 973
            MQIFVKTLTGKTITLEVEPSDTI NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIGNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 974  IQKESTLHLVLRLRGG 1021
            IQKESTLHLVLRLRGG
Sbjct: 61   IQKESTLHLVLRLRGG 76



 Score =  145 bits (366), Expect = 6e-35
 Identities = 73/76 (96%), Positives = 74/76 (97%)
 Frame = +2

Query: 110 MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
           MQIFVKTLTGKTITLEVEPSDTI NVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIGNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 290 IQKESTLHLVLRLRGG 337
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score = 76.6 bits (187), Expect(2) = 1e-14
 Identities = 38/42 (90%), Positives = 38/42 (90%)
 Frame = +2

Query: 1022 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            MQIFVKTLTGKTITLEVEPSDTI NVKAKIQDKEG PP  QR
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIGNVKAKIQDKEGIPPDQQR 42



 Score = 21.6 bits (44), Expect(2) = 1e-14
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 1126 LPPDHTKVIFAG 1161
            +PPD  ++IFAG
Sbjct: 36   IPPDQQRLIFAG 47


>ref|XP_126432.6| PREDICTED: hypothetical protein LOC216818 [Mus musculus].
          Length = 239

 Score =  108 bits (269), Expect = 1e-23
 Identities = 56/77 (72%), Positives = 64/77 (83%)
 Frame = +2

Query: 338 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 517
           +QIF+KTLT  TITLEV+PSDTIENVK KIQD EGIPPDQQRL+F GKQLEDG TLS+  
Sbjct: 114 VQIFLKTLTDNTITLEVKPSDTIENVKDKIQDSEGIPPDQQRLVFNGKQLEDGCTLSNCY 173

Query: 518 IQKESTLHLVLRLRGGM 568
           IQ +STL+L L L  G+
Sbjct: 174 IQNQSTLYLELPLCDGI 190



 Score =  108 bits (269), Expect = 1e-23
 Identities = 56/77 (72%), Positives = 64/77 (83%)
 Frame = +2

Query: 566 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 745
           +QIF+KTLT  TITLEV+PSDTIENVK KIQD EGIPPDQQRL+F GKQLEDG TLS+  
Sbjct: 114 VQIFLKTLTDNTITLEVKPSDTIENVKDKIQDSEGIPPDQQRLVFNGKQLEDGCTLSNCY 173

Query: 746 IQKESTLHLVLRLRGGM 796
           IQ +STL+L L L  G+
Sbjct: 174 IQNQSTLYLELPLCDGI 190



 Score =  108 bits (269), Expect = 1e-23
 Identities = 56/77 (72%), Positives = 64/77 (83%)
 Frame = +2

Query: 794  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 973
            +QIF+KTLT  TITLEV+PSDTIENVK KIQD EGIPPDQQRL+F GKQLEDG TLS+  
Sbjct: 114  VQIFLKTLTDNTITLEVKPSDTIENVKDKIQDSEGIPPDQQRLVFNGKQLEDGCTLSNCY 173

Query: 974  IQKESTLHLVLRLRGGM 1024
            IQ +STL+L L L  G+
Sbjct: 174  IQNQSTLYLELPLCDGI 190



 Score =  107 bits (266), Expect = 2e-23
 Identities = 55/77 (71%), Positives = 64/77 (83%)
 Frame = +2

Query: 110 MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
           +QIF+KTLT  TITLEV+PSDTIENVK KIQ+ EGIPPDQQRL+F GKQLEDG TLS+  
Sbjct: 114 VQIFLKTLTDNTITLEVKPSDTIENVKDKIQDSEGIPPDQQRLVFNGKQLEDGCTLSNCY 173

Query: 290 IQKESTLHLVLRLRGGM 340
           IQ +STL+L L L  G+
Sbjct: 174 IQNQSTLYLELPLCDGI 190



 Score = 66.2 bits (160), Expect = 5e-11
 Identities = 32/42 (76%), Positives = 35/42 (83%)
 Frame = +2

Query: 1022 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            +QIF+KTLT  TITLEV+PSDTIENVK KIQD EG PP  QR
Sbjct: 114  VQIFLKTLTDNTITLEVKPSDTIENVKDKIQDSEGIPPDQQR 155


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,489,863
Number of extensions: 1063304
Number of successful extensions: 4488
Number of sequences better than 1.0e-05: 33
Number of HSP's gapped: 4416
Number of HSP's successfully gapped: 148
Length of query: 387
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 284
Effective length of database: 12,523,851
Effective search space: 3556773684
Effective search space used: 3556773684
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001761
         (1163 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003359130.1| PREDICTED: polyubiquitin-B-like isoform 5 [S...   592   e-169
Alignment   gi|XP_003359129.1| PREDICTED: polyubiquitin-B-like isoform 4 [S...   592   e-169
Alignment   gi|XP_003359128.1| PREDICTED: polyubiquitin-B-like isoform 3 [S...   592   e-169
Alignment   gi|XP_003359127.1| PREDICTED: polyubiquitin-B-like isoform 2 [S...   592   e-169
Alignment   gi|XP_003132918.2| PREDICTED: polyubiquitin-B-like isoform 1 [S...   592   e-169
Alignment   gi|NP_001098779.1| ubiquitin [Sus scrofa].                           444   e-125
Alignment   gi|XP_003358349.1| PREDICTED: hypothetical protein LOC100627098...   168   6e-42
Alignment   gi|NP_999376.1| ubiquitin-60S ribosomal protein L40 [Sus scrofa].    151   6e-37
Alignment   gi|XP_003125185.1| PREDICTED: ubiquitin-40S ribosomal protein S...   151   8e-37
Alignment   gi|XP_003125184.1| PREDICTED: ubiquitin-40S ribosomal protein S...   151   8e-37

>ref|XP_003359130.1| PREDICTED: polyubiquitin-B-like isoform 5 [Sus scrofa].
          Length = 305

 Score =  592 bits (1525), Expect = e-169
 Identities = 304/304 (100%), Positives = 304/304 (100%)
 Frame = +2

Query: 110  MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
            MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 290  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 469
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61   IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 470  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 649
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 650  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 829
            KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 830  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 1009
            ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
Sbjct: 241  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 300

Query: 1010 LRGG 1021
            LRGG
Sbjct: 301  LRGG 304



 Score =  516 bits (1329), Expect = e-147
 Identities = 265/270 (98%), Positives = 266/270 (98%)
 Frame = +2

Query: 338  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 517
            MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 518  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 697
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61   IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 698  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 877
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 878  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 1057
            KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 1058 ITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            ITLEVEPSDTIENVKAKIQDKEG PP  QR
Sbjct: 241  ITLEVEPSDTIENVKAKIQDKEGIPPDQQR 270


>ref|XP_003359129.1| PREDICTED: polyubiquitin-B-like isoform 4 [Sus scrofa].
          Length = 305

 Score =  592 bits (1525), Expect = e-169
 Identities = 304/304 (100%), Positives = 304/304 (100%)
 Frame = +2

Query: 110  MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
            MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 290  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 469
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61   IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 470  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 649
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 650  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 829
            KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 830  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 1009
            ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
Sbjct: 241  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 300

Query: 1010 LRGG 1021
            LRGG
Sbjct: 301  LRGG 304



 Score =  516 bits (1329), Expect = e-147
 Identities = 265/270 (98%), Positives = 266/270 (98%)
 Frame = +2

Query: 338  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 517
            MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 518  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 697
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61   IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 698  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 877
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 878  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 1057
            KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 1058 ITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            ITLEVEPSDTIENVKAKIQDKEG PP  QR
Sbjct: 241  ITLEVEPSDTIENVKAKIQDKEGIPPDQQR 270


>ref|XP_003359128.1| PREDICTED: polyubiquitin-B-like isoform 3 [Sus scrofa].
          Length = 305

 Score =  592 bits (1525), Expect = e-169
 Identities = 304/304 (100%), Positives = 304/304 (100%)
 Frame = +2

Query: 110  MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
            MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 290  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 469
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61   IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 470  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 649
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 650  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 829
            KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 830  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 1009
            ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
Sbjct: 241  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 300

Query: 1010 LRGG 1021
            LRGG
Sbjct: 301  LRGG 304



 Score =  516 bits (1329), Expect = e-147
 Identities = 265/270 (98%), Positives = 266/270 (98%)
 Frame = +2

Query: 338  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 517
            MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 518  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 697
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61   IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 698  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 877
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 878  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 1057
            KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 1058 ITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            ITLEVEPSDTIENVKAKIQDKEG PP  QR
Sbjct: 241  ITLEVEPSDTIENVKAKIQDKEGIPPDQQR 270


>ref|XP_003359127.1| PREDICTED: polyubiquitin-B-like isoform 2 [Sus scrofa].
          Length = 305

 Score =  592 bits (1525), Expect = e-169
 Identities = 304/304 (100%), Positives = 304/304 (100%)
 Frame = +2

Query: 110  MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
            MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 290  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 469
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61   IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 470  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 649
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 650  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 829
            KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 830  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 1009
            ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
Sbjct: 241  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 300

Query: 1010 LRGG 1021
            LRGG
Sbjct: 301  LRGG 304



 Score =  516 bits (1329), Expect = e-147
 Identities = 265/270 (98%), Positives = 266/270 (98%)
 Frame = +2

Query: 338  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 517
            MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 518  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 697
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61   IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 698  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 877
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 878  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 1057
            KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 1058 ITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            ITLEVEPSDTIENVKAKIQDKEG PP  QR
Sbjct: 241  ITLEVEPSDTIENVKAKIQDKEGIPPDQQR 270


>ref|XP_003132918.2| PREDICTED: polyubiquitin-B-like isoform 1 [Sus scrofa].
          Length = 305

 Score =  592 bits (1525), Expect = e-169
 Identities = 304/304 (100%), Positives = 304/304 (100%)
 Frame = +2

Query: 110  MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
            MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 290  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 469
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61   IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 470  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 649
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 650  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 829
            KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 830  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 1009
            ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
Sbjct: 241  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 300

Query: 1010 LRGG 1021
            LRGG
Sbjct: 301  LRGG 304



 Score =  516 bits (1329), Expect = e-147
 Identities = 265/270 (98%), Positives = 266/270 (98%)
 Frame = +2

Query: 338  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 517
            MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 518  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 697
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61   IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 698  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 877
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 878  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 1057
            KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 1058 ITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            ITLEVEPSDTIENVKAKIQDKEG PP  QR
Sbjct: 241  ITLEVEPSDTIENVKAKIQDKEGIPPDQQR 270


>ref|NP_001098779.1| ubiquitin [Sus scrofa].
          Length = 229

 Score =  444 bits (1143), Expect = e-125
 Identities = 228/228 (100%), Positives = 228/228 (100%)
 Frame = +2

Query: 338  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 517
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 518  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 697
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61   IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 698  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 877
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 878  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 1021
            KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 181  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228



 Score =  441 bits (1135), Expect = e-124
 Identities = 226/228 (99%), Positives = 227/228 (99%)
 Frame = +2

Query: 110 MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
           MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 290 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 469
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 470 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 649
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 650 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 793
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228



 Score =  372 bits (956), Expect = e-103
 Identities = 191/194 (98%), Positives = 191/194 (98%)
 Frame = +2

Query: 566  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 745
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 746  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 925
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61   IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 926  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 1105
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 1106 KIQDKEGFPPTTQR 1147
            KIQDKEG PP  QR
Sbjct: 181  KIQDKEGIPPDQQR 194


>ref|XP_003358349.1| PREDICTED: hypothetical protein LOC100627098 [Sus scrofa].
          Length = 252

 Score =  168 bits (425), Expect = 6e-42
 Identities = 98/206 (47%), Positives = 112/206 (54%)
 Frame = -2

Query: 727 APIFQLLPGKDQPLLVWGDAFXXXXXXXXXXXXXXXLHFQGDGLTSQGLHEDLHPTSEAE 548
           A IFQLL  KD+PLLV G+AF               LH QGDGL  QGLHEDLH T + +
Sbjct: 44  AAIFQLLACKDEPLLVRGNAFLILDLGLHILDGVTGLHLQGDGLAGQGLHEDLHTTPQTQ 103

Query: 547 XXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWGDAFXXXXXXXXXXXXXXXLHFQGDGL 368
                           A IFQLL  KD+PLLV G+AF               LH QGDGL
Sbjct: 104 NQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGNAFLILDLGLHILDGVTGLHLQGDGL 163

Query: 367 TSQGLHEDLHPTSEAEXXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWGDALFFLNLPL 188
             QGLHEDLH T + +                A I QLL  KD+PLLV G+AL  L+L L
Sbjct: 164 AGQGLHEDLHTTPQTQNQMEGGLFLDVVIRKSAAILQLLACKDEPLLVGGNALLILDLGL 223

Query: 187 DILNGVTGLHFQGDGLTSQGLYKDLH 110
            IL+GVTGLH QGDGL  QGL++DLH
Sbjct: 224 HILDGVTGLHLQGDGLAGQGLHEDLH 249



 Score =  147 bits (371), Expect = 1e-35
 Identities = 90/206 (43%), Positives = 100/206 (48%)
 Frame = -2

Query: 955 APIFQLLPGKDQPLLVWGDAFXXXXXXXXXXXXXXXLHFQGDGLTSQGLHEDLHPTSEAE 776
           A IFQLL  KD+PLLV G+AF               LH QGDGL  QGLHEDLH T + +
Sbjct: 44  AAIFQLLACKDEPLLVRGNAFLILDLGLHILDGVTGLHLQGDGLAGQGLHEDLHTTPQTQ 103

Query: 775 XXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWGDAFXXXXXXXXXXXXXXXLHFQGDGL 596
                           A IFQLL  KD+PLLV G+AF               LH QGDGL
Sbjct: 104 NQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGNAFLILDLGLHILDGVTGLHLQGDGL 163

Query: 595 TSQGLHEDLHPTSEAEXXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWGDAFXXXXXXX 416
             QGLHEDLH T + +                A I QLL  KD+PLLV G+A        
Sbjct: 164 AGQGLHEDLHTTPQTQNQMEGGLFLDVVIRKSAAILQLLACKDEPLLVGGNALLILDLGL 223

Query: 415 XXXXXXXXLHFQGDGLTSQGLHEDLH 338
                   LH QGDGL  QGLHEDLH
Sbjct: 224 HILDGVTGLHLQGDGLAGQGLHEDLH 249



 Score =  139 bits (349), Expect = 4e-33
 Identities = 84/194 (43%), Positives = 92/194 (47%)
 Frame = -2

Query: 1147 PLCGRGEAXXXXXXXXXXXDGVAGLHFQGDGLTSQGLHEDLHPTSEAEXXXXXXXXXXXX 968
            PL  RG A           DGV GLH QGDGL  QGLHEDLH T + +            
Sbjct: 56   PLLVRGNAFLILDLGLHILDGVTGLHLQGDGLAGQGLHEDLHTTPQTQNQMESGLFLDVV 115

Query: 967  XXXGAPIFQLLPGKDQPLLVWGDAFXXXXXXXXXXXXXXXLHFQGDGLTSQGLHEDLHPT 788
                A IFQLL  KD+PLLV G+AF               LH QGDGL  QGLHEDLH T
Sbjct: 116  IRKSAAIFQLLACKDEPLLVGGNAFLILDLGLHILDGVTGLHLQGDGLAGQGLHEDLHTT 175

Query: 787  SEAEXXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWGDAFXXXXXXXXXXXXXXXLHFQ 608
             + +                A I QLL  KD+PLLV G+A                LH Q
Sbjct: 176  PQTQNQMEGGLFLDVVIRKSAAILQLLACKDEPLLVGGNALLILDLGLHILDGVTGLHLQ 235

Query: 607  GDGLTSQGLHEDLH 566
            GDGL  QGLHEDLH
Sbjct: 236  GDGLAGQGLHEDLH 249


>ref|NP_999376.1| ubiquitin-60S ribosomal protein L40 [Sus scrofa].
          Length = 128

 Score =  151 bits (382), Expect = 6e-37
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +2

Query: 338 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 517
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 518 IQKESTLHLVLRLRGGM 568
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (382), Expect = 6e-37
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +2

Query: 566 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 745
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 746 IQKESTLHLVLRLRGGM 796
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (382), Expect = 6e-37
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +2

Query: 794  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 973
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 974  IQKESTLHLVLRLRGGM 1024
            IQKESTLHLVLRLRGG+
Sbjct: 61   IQKESTLHLVLRLRGGI 77



 Score =  148 bits (374), Expect = 5e-36
 Identities = 74/77 (96%), Positives = 76/77 (98%)
 Frame = +2

Query: 110 MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
           MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 290 IQKESTLHLVLRLRGGM 340
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score = 79.3 bits (194), Expect(2) = 2e-15
 Identities = 39/42 (92%), Positives = 39/42 (92%)
 Frame = +2

Query: 1022 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG PP  QR
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 42



 Score = 21.6 bits (44), Expect(2) = 2e-15
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 1126 LPPDHTKVIFAG 1161
            +PPD  ++IFAG
Sbjct: 36   IPPDQQRLIFAG 47


>ref|XP_003125185.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Sus scrofa].
          Length = 156

 Score =  151 bits (381), Expect = 8e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +2

Query: 338 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 517
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 518 IQKESTLHLVLRLRGG 565
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 8e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +2

Query: 566 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 745
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 746 IQKESTLHLVLRLRGG 793
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 8e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +2

Query: 794  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 973
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 974  IQKESTLHLVLRLRGG 1021
            IQKESTLHLVLRLRGG
Sbjct: 61   IQKESTLHLVLRLRGG 76



 Score =  148 bits (373), Expect = 6e-36
 Identities = 74/76 (97%), Positives = 75/76 (98%)
 Frame = +2

Query: 110 MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
           MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 290 IQKESTLHLVLRLRGG 337
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score = 79.3 bits (194), Expect(2) = 2e-15
 Identities = 39/42 (92%), Positives = 39/42 (92%)
 Frame = +2

Query: 1022 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG PP  QR
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 42



 Score = 21.6 bits (44), Expect(2) = 2e-15
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 1126 LPPDHTKVIFAG 1161
            +PPD  ++IFAG
Sbjct: 36   IPPDQQRLIFAG 47


>ref|XP_003125184.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Sus scrofa].
          Length = 156

 Score =  151 bits (381), Expect = 8e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +2

Query: 338 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 517
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 518 IQKESTLHLVLRLRGG 565
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 8e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +2

Query: 566 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 745
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 746 IQKESTLHLVLRLRGG 793
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 8e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +2

Query: 794  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 973
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 974  IQKESTLHLVLRLRGG 1021
            IQKESTLHLVLRLRGG
Sbjct: 61   IQKESTLHLVLRLRGG 76



 Score =  148 bits (373), Expect = 6e-36
 Identities = 74/76 (97%), Positives = 75/76 (98%)
 Frame = +2

Query: 110 MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 289
           MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 290 IQKESTLHLVLRLRGG 337
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score = 79.3 bits (194), Expect(2) = 2e-15
 Identities = 39/42 (92%), Positives = 39/42 (92%)
 Frame = +2

Query: 1022 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGFPPTTQR 1147
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG PP  QR
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 42



 Score = 21.6 bits (44), Expect(2) = 2e-15
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 1126 LPPDHTKVIFAG 1161
            +PPD  ++IFAG
Sbjct: 36   IPPDQQRLIFAG 47


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,627,892
Number of extensions: 814194
Number of successful extensions: 3808
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 3730
Number of HSP's successfully gapped: 106
Length of query: 387
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 286
Effective length of database: 8,829,335
Effective search space: 2525189810
Effective search space used: 2525189810
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001761
         (1163 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr14                                                        2016   0.0  
Sscrofa_Chr12                                                         720   0.0  
Sscrofa_Chr10                                                         139   4e-30
Sscrofa_Chr15                                                         105   5e-20
Sscrofa_Chr02                                                          96   5e-17
Sscrofa_Chr01                                                          90   3e-15
Sscrofa_Chr03                                                          64   2e-07

>Sscrofa_Chr14 
||          Length = 153851969

 Score = 2016 bits (1017), Expect = 0.0
 Identities = 1026/1029 (99%)
 Strand = Plus / Plus

                                                                            
Query: 106      gacaatgcagatctttgtaaagaccttgactggtaagaccatcaccctggaagtggagcc 165
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29959859 gacaatgcagatctttgtaaagaccttgactggtaagaccatcaccctggaagtggagcc 29959918

                                                                            
Query: 166      cagtgacaccattgagaatgtcaaggggaagattcaagaaaaagagggcatccccccaga 225
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29959919 cagtgacaccattgagaatgtcaaggggaagattcaagaaaaagagggcatccccccaga 29959978

                                                                            
Query: 226      ccagcagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgacta 285
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29959979 ccagcagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgacta 29960038

                                                                            
Query: 286      caacatccagaaggagtccaccctgcacctggtcctccgcctcagaggtgggatgcagat 345
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960039 caacatccagaaggagtccaccctgcacctggtcctccgcctcagaggtgggatgcagat 29960098

                                                                            
Query: 346      cttcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccagcgacaccat 405
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960099 cttcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccagcgacaccat 29960158

                                                                            
Query: 406      cgagaacgtcaaggcgaagatccaggacaaggaaggcatccccccagaccagcagaggct 465
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960159 cgagaacgtcaaggcgaagatccaggacaaggaaggcatccccccagaccagcagaggct 29960218

                                                                            
Query: 466      gatctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaacatccagaa 525
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960219 gatctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaacatccagaa 29960278

                                                                            
Query: 526      ggagtccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttcgtgaagac 585
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960279 ggagtccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttcgtgaagac 29960338

                                                                            
Query: 586      cttgactggtaagaccatcaccctggaagtggagcccagcgacaccatcgagaacgtcaa 645
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960339 cttgactggtaagaccatcaccctggaagtggagcccagcgacaccatcgagaacgtcaa 29960398

                                                                            
Query: 646      ggcgaagatccaggacaaggaaggcatccccccagaccagcagaggctgatctttgccgg 705
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960399 ggcgaagatccaggacaaggaaggcatccccccagaccagcagaggctgatctttgccgg 29960458

                                                                            
Query: 706      gaagcagctggaagatgggcgcaccctgtctgactacaacatccagaaggagtccaccct 765
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960459 gaagcagctggaagatgggcgcaccctgtctgactacaacatccagaaggagtccaccct 29960518

                                                                            
Query: 766      gcacctggtcctccgcctcagaggtgggatgcagatcttcgtgaagaccttgactggtaa 825
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960519 gcacctggtcctccgcctcagaggtgggatgcagatcttcgtgaagaccttgactggtaa 29960578

                                                                            
Query: 826      gaccatcaccctggaagtggagcccagcgacaccatcgagaacgtcaaggcgaagatcca 885
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960579 gaccatcaccctggaagtggagcccagcgacaccatcgagaacgtcaaggcgaagatcca 29960638

                                                                            
Query: 886      ggacaaggaaggcatccccccagaccagcagaggctgatctttgccgggaagcagctgga 945
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960639 ggacaaggaaggcatccccccagaccagcagaggctgatctttgccgggaagcagctgga 29960698

                                                                            
Query: 946      agatgggcgcaccctgtctgactacaacatccagaaggagtccaccctgcacctggtcct 1005
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960699 agatgggcgcaccctgtctgactacaacatccagaaggagtccaccctgcacctggtcct 29960758

                                                                            
Query: 1006     ccgcctcagaggtgggatgcagatcttcgtgaagaccttgactggtaagaccatcaccct 1065
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960759 ccgcctcagaggtgggatgcagatcttcgtgaagaccttgactggtaagaccatcaccct 29960818

                                                                            
Query: 1066     ggaagtggagcccagcgacaccatcgagaacgtcaaggcgaaaatccaggacaaggaagg 1125
                |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 29960819 ggaagtggagcccagcgacaccatcgagaacgtcaaggcgaagatccaagacaaggaagg 29960878

                         
Query: 1126     cttcccccc 1134
                | |||||||
Sbjct: 29960879 catcccccc 29960887



 Score = 1905 bits (961), Expect = 0.0
 Identities = 1009/1025 (98%)
 Strand = Plus / Plus

                                                                            
Query: 110      atgcagatctttgtaaagaccttgactggtaagaccatcaccctggaagtggagcccagt 169
                ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 29960091 atgcagatcttcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccagc 29960150

                                                                            
Query: 170      gacaccattgagaatgtcaaggggaagattcaagaaaaagagggcatccccccagaccag 229
                |||||||| ||||| ||||||| |||||| || || || || ||||||||||||||||||
Sbjct: 29960151 gacaccatcgagaacgtcaaggcgaagatccaggacaaggaaggcatccccccagaccag 29960210

                                                                            
Query: 230      cagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaac 289
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960211 cagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaac 29960270

                                                                            
Query: 290      atccagaaggagtccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttc 349
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960271 atccagaaggagtccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttc 29960330

                                                                            
Query: 350      gtgaagaccttgactggtaagaccatcaccctggaagtggagcccagcgacaccatcgag 409
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960331 gtgaagaccttgactggtaagaccatcaccctggaagtggagcccagcgacaccatcgag 29960390

                                                                            
Query: 410      aacgtcaaggcgaagatccaggacaaggaaggcatccccccagaccagcagaggctgatc 469
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960391 aacgtcaaggcgaagatccaggacaaggaaggcatccccccagaccagcagaggctgatc 29960450

                                                                            
Query: 470      tttgccgggaagcagctggaagatgggcgcaccctgtctgactacaacatccagaaggag 529
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960451 tttgccgggaagcagctggaagatgggcgcaccctgtctgactacaacatccagaaggag 29960510

                                                                            
Query: 530      tccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttcgtgaagaccttg 589
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960511 tccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttcgtgaagaccttg 29960570

                                                                            
Query: 590      actggtaagaccatcaccctggaagtggagcccagcgacaccatcgagaacgtcaaggcg 649
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960571 actggtaagaccatcaccctggaagtggagcccagcgacaccatcgagaacgtcaaggcg 29960630

                                                                            
Query: 650      aagatccaggacaaggaaggcatccccccagaccagcagaggctgatctttgccgggaag 709
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960631 aagatccaggacaaggaaggcatccccccagaccagcagaggctgatctttgccgggaag 29960690

                                                                            
Query: 710      cagctggaagatgggcgcaccctgtctgactacaacatccagaaggagtccaccctgcac 769
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960691 cagctggaagatgggcgcaccctgtctgactacaacatccagaaggagtccaccctgcac 29960750

                                                                            
Query: 770      ctggtcctccgcctcagaggtgggatgcagatcttcgtgaagaccttgactggtaagacc 829
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960751 ctggtcctccgcctcagaggtgggatgcagatcttcgtgaagaccttgactggtaagacc 29960810

                                                                            
Query: 830      atcaccctggaagtggagcccagcgacaccatcgagaacgtcaaggcgaagatccaggac 889
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 29960811 atcaccctggaagtggagcccagcgacaccatcgagaacgtcaaggcgaagatccaagac 29960870

                                                                            
Query: 890      aaggaaggcatccccccagaccagcagaggctgatctttgccgggaagcagctggaagat 949
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960871 aaggaaggcatccccccagaccagcagaggctgatctttgccgggaagcagctggaagat 29960930

                                                                            
Query: 950      gggcgcaccctgtctgactacaacatccagaaggagtccaccctgcacctggtcctccgc 1009
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960931 gggcgcaccctgtctgactacaacatccagaaggagtccaccctgcacctggtcctccgc 29960990

                                                                            
Query: 1010     ctcagaggtgggatgcagatcttcgtgaagaccttgactggtaagaccatcaccctggaa 1069
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960991 ctcagaggtgggatgcagatcttcgtgaagaccttgactggtaagaccatcaccctggaa 29961050

                                                                            
Query: 1070     gtggagcccagcgacaccatcgagaacgtcaaggcgaaaatccaggacaaggaaggcttc 1129
                |||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||| ||
Sbjct: 29961051 gtggagcccagcgacaccatcgagaatgtcaaggcgaagatccaagacaaggaaggcatc 29961110

                     
Query: 1130     ccccc 1134
                |||||
Sbjct: 29961111 ccccc 29961115



 Score = 1889 bits (953), Expect = 0.0
 Identities = 1007/1025 (98%)
 Strand = Plus / Plus

                                                                            
Query: 110      atgcagatctttgtaaagaccttgactggtaagaccatcaccctggaagtggagcccagt 169
                ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 29960319 atgcagatcttcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccagc 29960378

                                                                            
Query: 170      gacaccattgagaatgtcaaggggaagattcaagaaaaagagggcatccccccagaccag 229
                |||||||| ||||| ||||||| |||||| || || || || ||||||||||||||||||
Sbjct: 29960379 gacaccatcgagaacgtcaaggcgaagatccaggacaaggaaggcatccccccagaccag 29960438

                                                                            
Query: 230      cagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaac 289
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960439 cagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaac 29960498

                                                                            
Query: 290      atccagaaggagtccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttc 349
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960499 atccagaaggagtccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttc 29960558

                                                                            
Query: 350      gtgaagaccttgactggtaagaccatcaccctggaagtggagcccagcgacaccatcgag 409
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960559 gtgaagaccttgactggtaagaccatcaccctggaagtggagcccagcgacaccatcgag 29960618

                                                                            
Query: 410      aacgtcaaggcgaagatccaggacaaggaaggcatccccccagaccagcagaggctgatc 469
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960619 aacgtcaaggcgaagatccaggacaaggaaggcatccccccagaccagcagaggctgatc 29960678

                                                                            
Query: 470      tttgccgggaagcagctggaagatgggcgcaccctgtctgactacaacatccagaaggag 529
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960679 tttgccgggaagcagctggaagatgggcgcaccctgtctgactacaacatccagaaggag 29960738

                                                                            
Query: 530      tccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttcgtgaagaccttg 589
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960739 tccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttcgtgaagaccttg 29960798

                                                                            
Query: 590      actggtaagaccatcaccctggaagtggagcccagcgacaccatcgagaacgtcaaggcg 649
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960799 actggtaagaccatcaccctggaagtggagcccagcgacaccatcgagaacgtcaaggcg 29960858

                                                                            
Query: 650      aagatccaggacaaggaaggcatccccccagaccagcagaggctgatctttgccgggaag 709
                |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960859 aagatccaagacaaggaaggcatccccccagaccagcagaggctgatctttgccgggaag 29960918

                                                                            
Query: 710      cagctggaagatgggcgcaccctgtctgactacaacatccagaaggagtccaccctgcac 769
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960919 cagctggaagatgggcgcaccctgtctgactacaacatccagaaggagtccaccctgcac 29960978

                                                                            
Query: 770      ctggtcctccgcctcagaggtgggatgcagatcttcgtgaagaccttgactggtaagacc 829
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960979 ctggtcctccgcctcagaggtgggatgcagatcttcgtgaagaccttgactggtaagacc 29961038

                                                                            
Query: 830      atcaccctggaagtggagcccagcgacaccatcgagaacgtcaaggcgaagatccaggac 889
                |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 29961039 atcaccctggaagtggagcccagcgacaccatcgagaatgtcaaggcgaagatccaagac 29961098

                                                                            
Query: 890      aaggaaggcatccccccagaccagcagaggctgatctttgccgggaagcagctggaagat 949
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29961099 aaggaaggcatccccccagaccagcagaggctgatctttgccgggaagcagctggaagat 29961158

                                                                            
Query: 950      gggcgcaccctgtctgactacaacatccagaaggagtccaccctgcacctggtcctccgc 1009
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29961159 gggcgcaccctgtctgactacaacatccagaaggagtccaccctgcacctggtcctccgc 29961218

                                                                            
Query: 1010     ctcagaggtgggatgcagatcttcgtgaagaccttgactggtaagaccatcaccctggaa 1069
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29961219 ctcagaggtgggatgcagatcttcgtgaagaccttgactggtaagaccatcaccctggaa 29961278

                                                                            
Query: 1070     gtggagcccagcgacaccatcgagaacgtcaaggcgaaaatccaggacaaggaaggcttc 1129
                |||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||| ||
Sbjct: 29961279 gtggagcccagcgacaccatcgagaatgtcaaggcgaagatccaagacaaggaaggcatc 29961338

                     
Query: 1130     ccccc 1134
                |||||
Sbjct: 29961339 ccccc 29961343



 Score = 1641 bits (828), Expect = 0.0
 Identities = 879/896 (98%)
 Strand = Plus / Plus

                                                                            
Query: 110      atgcagatctttgtaaagaccttgactggtaagaccatcaccctggaagtggagcccagt 169
                ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 29960547 atgcagatcttcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccagc 29960606

                                                                            
Query: 170      gacaccattgagaatgtcaaggggaagattcaagaaaaagagggcatccccccagaccag 229
                |||||||| ||||| ||||||| |||||| || || || || ||||||||||||||||||
Sbjct: 29960607 gacaccatcgagaacgtcaaggcgaagatccaggacaaggaaggcatccccccagaccag 29960666

                                                                            
Query: 230      cagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaac 289
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960667 cagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaac 29960726

                                                                            
Query: 290      atccagaaggagtccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttc 349
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960727 atccagaaggagtccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttc 29960786

                                                                            
Query: 350      gtgaagaccttgactggtaagaccatcaccctggaagtggagcccagcgacaccatcgag 409
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960787 gtgaagaccttgactggtaagaccatcaccctggaagtggagcccagcgacaccatcgag 29960846

                                                                            
Query: 410      aacgtcaaggcgaagatccaggacaaggaaggcatccccccagaccagcagaggctgatc 469
                |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 29960847 aacgtcaaggcgaagatccaagacaaggaaggcatccccccagaccagcagaggctgatc 29960906

                                                                            
Query: 470      tttgccgggaagcagctggaagatgggcgcaccctgtctgactacaacatccagaaggag 529
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960907 tttgccgggaagcagctggaagatgggcgcaccctgtctgactacaacatccagaaggag 29960966

                                                                            
Query: 530      tccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttcgtgaagaccttg 589
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960967 tccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttcgtgaagaccttg 29961026

                                                                            
Query: 590      actggtaagaccatcaccctggaagtggagcccagcgacaccatcgagaacgtcaaggcg 649
                |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 29961027 actggtaagaccatcaccctggaagtggagcccagcgacaccatcgagaatgtcaaggcg 29961086

                                                                            
Query: 650      aagatccaggacaaggaaggcatccccccagaccagcagaggctgatctttgccgggaag 709
                |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29961087 aagatccaagacaaggaaggcatccccccagaccagcagaggctgatctttgccgggaag 29961146

                                                                            
Query: 710      cagctggaagatgggcgcaccctgtctgactacaacatccagaaggagtccaccctgcac 769
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29961147 cagctggaagatgggcgcaccctgtctgactacaacatccagaaggagtccaccctgcac 29961206

                                                                            
Query: 770      ctggtcctccgcctcagaggtgggatgcagatcttcgtgaagaccttgactggtaagacc 829
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29961207 ctggtcctccgcctcagaggtgggatgcagatcttcgtgaagaccttgactggtaagacc 29961266

                                                                            
Query: 830      atcaccctggaagtggagcccagcgacaccatcgagaacgtcaaggcgaagatccaggac 889
                |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 29961267 atcaccctggaagtggagcccagcgacaccatcgagaatgtcaaggcgaagatccaagac 29961326

                                                                            
Query: 890      aaggaaggcatccccccagaccagcagaggctgatctttgccgggaagcagctggaagat 949
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29961327 aaggaaggcatccccccagaccagcagaggctgatctttgccgggaagcagctggaagat 29961386

                                                                        
Query: 950      gggcgcaccctgtctgactacaacatccagaaggagtccaccctgcacctggtcct 1005
                |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 29961387 gggcgcaccctgtctgactacaacatccagaaggagtccaccctgcacttggtcct 29961442



 Score =  127 bits (64), Expect = 1e-26
 Identities = 64/64 (100%)
 Strand = Plus / Plus

                                                                            
Query: 43       agtttcgtggaggccgggagtttgcctgcgtttcttctgtgaccgctgttgccactgcca 102
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29958927 agtttcgtggaggccgggagtttgcctgcgtttcttctgtgaccgctgttgccactgcca 29958986

                    
Query: 103      cctg 106
                ||||
Sbjct: 29958987 cctg 29958990



 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 169/210 (80%), Gaps = 1/210 (0%)
 Strand = Plus / Minus

                                                                            
Query: 793      gatgcagatcttcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccag 852
                |||||||||||| ||||||||| | || || |||||||||||| | || ||  |||||||
Sbjct: 42239732 gatgcagatctttgtgaagaccctaacaggcaagaccatcacctttgaggtcaagcccag 42239673

                                                                            
Query: 853      cgacaccatcgagaacgtcaaggcgaagatccaggacaaggaaggcatccccccagacca 912
                | | ||||  ||||| ||||| || || |||||||||||||| |||||||  || |||||
Sbjct: 42239672 caataccaa-gagaatgtcaaagctaaaatccaggacaaggagggcatcctgcctgacca 42239614

                                                                            
Query: 913      gcagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaa 972
                |||| | ||||| |||| | | || |||||||| ||||| |  || || || |||||| |
Sbjct: 42239613 gcagtgtctgatttttgtcagcaaacagctggaggatggccatacactctcagactacga 42239554

                                              
Query: 973      catccagaaggagtccaccctgcacctggt 1002
                 |||||||| ||||||||||| ||| ||||
Sbjct: 42239553 tatccagaaagagtccacccttcacttggt 42239524



 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 169/210 (80%), Gaps = 1/210 (0%)
 Strand = Plus / Minus

                                                                            
Query: 565      gatgcagatcttcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccag 624
                |||||||||||| ||||||||| | || || |||||||||||| | || ||  |||||||
Sbjct: 42239732 gatgcagatctttgtgaagaccctaacaggcaagaccatcacctttgaggtcaagcccag 42239673

                                                                            
Query: 625      cgacaccatcgagaacgtcaaggcgaagatccaggacaaggaaggcatccccccagacca 684
                | | ||||  ||||| ||||| || || |||||||||||||| |||||||  || |||||
Sbjct: 42239672 caataccaa-gagaatgtcaaagctaaaatccaggacaaggagggcatcctgcctgacca 42239614

                                                                            
Query: 685      gcagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaa 744
                |||| | ||||| |||| | | || |||||||| ||||| |  || || || |||||| |
Sbjct: 42239613 gcagtgtctgatttttgtcagcaaacagctggaggatggccatacactctcagactacga 42239554

                                              
Query: 745      catccagaaggagtccaccctgcacctggt 774
                 |||||||| ||||||||||| ||| ||||
Sbjct: 42239553 tatccagaaagagtccacccttcacttggt 42239524



 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 169/210 (80%), Gaps = 1/210 (0%)
 Strand = Plus / Minus

                                                                            
Query: 337      gatgcagatcttcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccag 396
                |||||||||||| ||||||||| | || || |||||||||||| | || ||  |||||||
Sbjct: 42239732 gatgcagatctttgtgaagaccctaacaggcaagaccatcacctttgaggtcaagcccag 42239673

                                                                            
Query: 397      cgacaccatcgagaacgtcaaggcgaagatccaggacaaggaaggcatccccccagacca 456
                | | ||||  ||||| ||||| || || |||||||||||||| |||||||  || |||||
Sbjct: 42239672 caataccaa-gagaatgtcaaagctaaaatccaggacaaggagggcatcctgcctgacca 42239614

                                                                            
Query: 457      gcagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaa 516
                |||| | ||||| |||| | | || |||||||| ||||| |  || || || |||||| |
Sbjct: 42239613 gcagtgtctgatttttgtcagcaaacagctggaggatggccatacactctcagactacga 42239554

                                              
Query: 517      catccagaaggagtccaccctgcacctggt 546
                 |||||||| ||||||||||| ||| ||||
Sbjct: 42239553 tatccagaaagagtccacccttcacttggt 42239524



 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 85/102 (83%), Gaps = 1/102 (0%)
 Strand = Plus / Minus

                                                                            
Query: 1021     gatgcagatcttcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccag 1080
                |||||||||||| ||||||||| | || || |||||||||||| | || ||  |||||||
Sbjct: 42239732 gatgcagatctttgtgaagaccctaacaggcaagaccatcacctttgaggtcaagcccag 42239673

                                                          
Query: 1081     cgacaccatcgagaacgtcaaggcgaaaatccaggacaagga 1122
                | | ||||  ||||| ||||| || |||||||||||||||||
Sbjct: 42239672 caatacca-agagaatgtcaaagctaaaatccaggacaagga 42239632


>Sscrofa_Chr12 
||          Length = 63588571

 Score =  720 bits (363), Expect = 0.0
 Identities = 594/671 (88%)
 Strand = Plus / Minus

                                                                            
Query: 338      atgcagatcttcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccagc 397
                ||||||||||||||||||||| |||| || ||||||||||||||||| ||||||||||| 
Sbjct: 62298814 atgcagatcttcgtgaagaccctgaccggcaagaccatcaccctggaggtggagcccagt 62298755

                                                                            
Query: 398      gacaccatcgagaacgtcaaggcgaagatccaggacaaggaaggcatccccccagaccag 457
                |||||||||||||| || ||||| ||||||||||| ||||| ||||| ||||| ||||||
Sbjct: 62298754 gacaccatcgagaatgtgaaggccaagatccaggataaggagggcattccccccgaccag 62298695

                                                                            
Query: 458      cagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaac 517
                |||||||| |||||||| || ||||||||||| ||||| ||||| || ||||| ||||||
Sbjct: 62298694 cagaggctcatctttgcaggcaagcagctggaggatggccgcactctttctgattacaac 62298635

                                                                            
Query: 518      atccagaaggagtccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttc 577
                |||||||| ||||||||||| || ||||| || || || || ||||| ||||||||||||
Sbjct: 62298634 atccagaaagagtccaccctccatctggttctgcgtctgaggggtggtatgcagatcttc 62298575

                                                                            
Query: 578      gtgaagaccttgactggtaagaccatcaccctggaagtggagcccagcgacaccatcgag 637
                |||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 62298574 gtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagtgacaccatcgag 62298515

                                                                            
Query: 638      aacgtcaaggcgaagatccaggacaaggaaggcatccccccagaccagcagaggctgatc 697
                || || ||||| ||||||||||| ||||||||||| ||||| |||||||||||||| |||
Sbjct: 62298514 aatgtgaaggccaagatccaggataaggaaggcattccccccgaccagcagaggctcatc 62298455

                                                                            
Query: 698      tttgccgggaagcagctggaagatgggcgcaccctgtctgactacaacatccagaaggag 757
                ||||| || ||||||||||||||||| ||||| || ||||| |||||||||||||| |||
Sbjct: 62298454 tttgcaggcaagcagctggaagatggccgcactctttctgattacaacatccagaaagag 62298395

                                                                            
Query: 758      tccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttcgtgaagaccttg 817
                ||||| || || ||||| || || || || ||||| ||||||||||||||||||||||||
Sbjct: 62298394 tccactctccatctggttctgcgtctgaggggtggtatgcagatcttcgtgaagaccttg 62298335

                                                                            
Query: 818      actggtaagaccatcaccctggaagtggagcccagcgacaccatcgagaacgtcaaggcg 877
                || || ||||||||||||||||| ||||||||||| |||||||||||||| || ||||| 
Sbjct: 62298334 accggcaagaccatcaccctggaggtggagcccagtgacaccatcgagaatgtgaaggcc 62298275

                                                                            
Query: 878      aagatccaggacaaggaaggcatccccccagaccagcagaggctgatctttgccgggaag 937
                ||||||||||| ||||||||||| ||||| |||||||||||||| |||||||| || |||
Sbjct: 62298274 aagatccaggataaggaaggcattccccctgaccagcagaggctcatctttgcaggcaag 62298215

                                                                            
Query: 938      cagctggaagatgggcgcaccctgtctgactacaacatccagaaggagtccaccctgcac 997
                |||||||||||||| ||||| || ||||| |||||||||||||| |||||||| || || 
Sbjct: 62298214 cagctggaagatggccgcactctttctgattacaacatccagaaagagtccactctccat 62298155

                           
Query: 998      ctggtcctccg 1008
                |||||||||||
Sbjct: 62298154 ctggtcctccg 62298144



 Score =  690 bits (348), Expect = 0.0
 Identities = 591/672 (87%)
 Strand = Plus / Minus

                                                                            
Query: 109      aatgcagatctttgtaaagaccttgactggtaagaccatcaccctggaagtggagcccag 168
                |||||||||||| || |||||| |||| || ||||||||||||||||| |||||||||||
Sbjct: 62298815 aatgcagatcttcgtgaagaccctgaccggcaagaccatcaccctggaggtggagcccag 62298756

                                                                            
Query: 169      tgacaccattgagaatgtcaaggggaagattcaagaaaaagagggcatccccccagacca 228
                ||||||||| |||||||| ||||  ||||| || || || |||||||| ||||| |||||
Sbjct: 62298755 tgacaccatcgagaatgtgaaggccaagatccaggataaggagggcattccccccgacca 62298696

                                                                            
Query: 229      gcagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaa 288
                ||||||||| |||||||| || ||||||||||| ||||| ||||| || ||||| |||||
Sbjct: 62298695 gcagaggctcatctttgcaggcaagcagctggaggatggccgcactctttctgattacaa 62298636

                                                                            
Query: 289      catccagaaggagtccaccctgcacctggtcctccgcctcagaggtgggatgcagatctt 348
                ||||||||| ||||||||||| || ||||| || || || || ||||| |||||||||||
Sbjct: 62298635 catccagaaagagtccaccctccatctggttctgcgtctgaggggtggtatgcagatctt 62298576

                                                                            
Query: 349      cgtgaagaccttgactggtaagaccatcaccctggaagtggagcccagcgacaccatcga 408
                ||||||||||||||| || ||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 62298575 cgtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagtgacaccatcga 62298516

                                                                            
Query: 409      gaacgtcaaggcgaagatccaggacaaggaaggcatccccccagaccagcagaggctgat 468
                ||| || ||||| ||||||||||| ||||||||||| ||||| |||||||||||||| ||
Sbjct: 62298515 gaatgtgaaggccaagatccaggataaggaaggcattccccccgaccagcagaggctcat 62298456

                                                                            
Query: 469      ctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaacatccagaagga 528
                |||||| || ||||||||||||||||| ||||| || ||||| |||||||||||||| ||
Sbjct: 62298455 ctttgcaggcaagcagctggaagatggccgcactctttctgattacaacatccagaaaga 62298396

                                                                            
Query: 529      gtccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttcgtgaagacctt 588
                |||||| || || ||||| || || || || ||||| |||||||||||||||||||||||
Sbjct: 62298395 gtccactctccatctggttctgcgtctgaggggtggtatgcagatcttcgtgaagacctt 62298336

                                                                            
Query: 589      gactggtaagaccatcaccctggaagtggagcccagcgacaccatcgagaacgtcaaggc 648
                ||| || ||||||||||||||||| ||||||||||| |||||||||||||| || |||||
Sbjct: 62298335 gaccggcaagaccatcaccctggaggtggagcccagtgacaccatcgagaatgtgaaggc 62298276

                                                                            
Query: 649      gaagatccaggacaaggaaggcatccccccagaccagcagaggctgatctttgccgggaa 708
                 ||||||||||| ||||||||||| ||||| |||||||||||||| |||||||| || ||
Sbjct: 62298275 caagatccaggataaggaaggcattccccctgaccagcagaggctcatctttgcaggcaa 62298216

                                                                            
Query: 709      gcagctggaagatgggcgcaccctgtctgactacaacatccagaaggagtccaccctgca 768
                ||||||||||||||| ||||| || ||||| |||||||||||||| |||||||| || ||
Sbjct: 62298215 gcagctggaagatggccgcactctttctgattacaacatccagaaagagtccactctcca 62298156

                            
Query: 769      cctggtcctccg 780
                 |||||||||||
Sbjct: 62298155 tctggtcctccg 62298144



 Score =  601 bits (303), Expect = e-169
 Identities = 508/575 (88%), Gaps = 1/575 (0%)
 Strand = Plus / Minus

                                                                            
Query: 566      atgcagatcttcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccagc 625
                ||||||||||||||||||||| |||| || ||||||||||||||||| ||||||||||| 
Sbjct: 62298814 atgcagatcttcgtgaagaccctgaccggcaagaccatcaccctggaggtggagcccagt 62298755

                                                                            
Query: 626      gacaccatcgagaacgtcaaggcgaagatccaggacaaggaaggcatccccccagaccag 685
                |||||||||||||| || ||||| ||||||||||| ||||| ||||| ||||| ||||||
Sbjct: 62298754 gacaccatcgagaatgtgaaggccaagatccaggataaggagggcattccccccgaccag 62298695

                                                                            
Query: 686      cagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaac 745
                |||||||| |||||||| || ||||||||||| ||||| ||||| || ||||| ||||||
Sbjct: 62298694 cagaggctcatctttgcaggcaagcagctggaggatggccgcactctttctgattacaac 62298635

                                                                            
Query: 746      atccagaaggagtccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttc 805
                |||||||| ||||||||||| || ||||| || || || || ||||| ||||||||||||
Sbjct: 62298634 atccagaaagagtccaccctccatctggttctgcgtctgaggggtggtatgcagatcttc 62298575

                                                                            
Query: 806      gtgaagaccttgactggtaagaccatcaccctggaagtggagcccagcgacaccatcgag 865
                |||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 62298574 gtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagtgacaccatcgag 62298515

                                                                            
Query: 866      aacgtcaaggcgaagatccaggacaaggaaggcatccccccagaccagcagaggctgatc 925
                || || ||||| ||||||||||| ||||||||||| ||||| |||||||||||||| |||
Sbjct: 62298514 aatgtgaaggccaagatccaggataaggaaggcattccccccgaccagcagaggctcatc 62298455

                                                                            
Query: 926      tttgccgggaagcagctggaagatgggcgcaccctgtctgactacaacatccagaaggag 985
                ||||| || ||||||||||||||||| ||||| || ||||| |||||||||||||| |||
Sbjct: 62298454 tttgcaggcaagcagctggaagatggccgcactctttctgattacaacatccagaaagag 62298395

                                                                            
Query: 986      tccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttcgtgaagaccttg 1045
                ||||| || || ||||| || || || || ||||| ||||||||||||||||||||||||
Sbjct: 62298394 tccactctccatctggttctgcgtctgaggggtggtatgcagatcttcgtgaagaccttg 62298335

                                                                            
Query: 1046     actggtaagaccatcaccctggaagtggagcccagcgacaccatcgagaacgtcaaggcg 1105
                || || ||||||||||||||||| ||||||||||| |||||||||||||| || ||||| 
Sbjct: 62298334 accggcaagaccatcaccctggaggtggagcccagtgacaccatcgagaatgtgaaggcc 62298275

                                                   
Query: 1106     aaaatccaggacaaggaaggc-ttccccccgacca 1139
                || |||||||| ||||||||| ||||||| |||||
Sbjct: 62298274 aagatccaggataaggaaggcattccccctgacca 62298240


>Sscrofa_Chr10 
||          Length = 79102373

 Score =  139 bits (70), Expect = 4e-30
 Identities = 178/216 (82%), Gaps = 16/216 (7%)
 Strand = Plus / Minus

                                                                            
Query: 794      atgcagatcttcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccagc 853
                ||||||||||| |||||||||||||| || ||||||||||||||||| ||||||||||| 
Sbjct: 29934422 atgcagatctttgtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagt 29934363

                                                                            
Query: 854      gacaccatcgagaacgtcaaggcgaagatccaggacaaggaaggcatc-cccccagacca 912
                ||||||| |||||               ||||||| |||||||||||  ||||| |||| 
Sbjct: 29934362 gacaccaccgaga---------------tccaggataaggaaggcattgccccccgaccg 29934318

                                                                            
Query: 913      gcagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaa 972
                ||||||||| |||||||| || |||| |||||| ||||| ||||| || ||||| |||||
Sbjct: 29934317 gcagaggctcatctttgcaggcaagccgctggaggatggccgcactctttctgattacaa 29934258

                                                    
Query: 973      catccagaaggagtccaccctgcacctggtcctccg 1008
                ||||||||| ||||||||||| || |||||||||||
Sbjct: 29934257 catccagaaagagtccaccctccatctggtcctccg 29934222



 Score =  139 bits (70), Expect = 4e-30
 Identities = 178/216 (82%), Gaps = 16/216 (7%)
 Strand = Plus / Minus

                                                                            
Query: 566      atgcagatcttcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccagc 625
                ||||||||||| |||||||||||||| || ||||||||||||||||| ||||||||||| 
Sbjct: 29934422 atgcagatctttgtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagt 29934363

                                                                            
Query: 626      gacaccatcgagaacgtcaaggcgaagatccaggacaaggaaggcatc-cccccagacca 684
                ||||||| |||||               ||||||| |||||||||||  ||||| |||| 
Sbjct: 29934362 gacaccaccgaga---------------tccaggataaggaaggcattgccccccgaccg 29934318

                                                                            
Query: 685      gcagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaa 744
                ||||||||| |||||||| || |||| |||||| ||||| ||||| || ||||| |||||
Sbjct: 29934317 gcagaggctcatctttgcaggcaagccgctggaggatggccgcactctttctgattacaa 29934258

                                                    
Query: 745      catccagaaggagtccaccctgcacctggtcctccg 780
                ||||||||| ||||||||||| || |||||||||||
Sbjct: 29934257 catccagaaagagtccaccctccatctggtcctccg 29934222



 Score =  139 bits (70), Expect = 4e-30
 Identities = 178/216 (82%), Gaps = 16/216 (7%)
 Strand = Plus / Minus

                                                                            
Query: 338      atgcagatcttcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccagc 397
                ||||||||||| |||||||||||||| || ||||||||||||||||| ||||||||||| 
Sbjct: 29934422 atgcagatctttgtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagt 29934363

                                                                            
Query: 398      gacaccatcgagaacgtcaaggcgaagatccaggacaaggaaggcatc-cccccagacca 456
                ||||||| |||||               ||||||| |||||||||||  ||||| |||| 
Sbjct: 29934362 gacaccaccgaga---------------tccaggataaggaaggcattgccccccgaccg 29934318

                                                                            
Query: 457      gcagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaa 516
                ||||||||| |||||||| || |||| |||||| ||||| ||||| || ||||| |||||
Sbjct: 29934317 gcagaggctcatctttgcaggcaagccgctggaggatggccgcactctttctgattacaa 29934258

                                                    
Query: 517      catccagaaggagtccaccctgcacctggtcctccg 552
                ||||||||| ||||||||||| || |||||||||||
Sbjct: 29934257 catccagaaagagtccaccctccatctggtcctccg 29934222



 Score =  109 bits (55), Expect = 3e-21
 Identities = 175/217 (80%), Gaps = 16/217 (7%)
 Strand = Plus / Minus

                                                                            
Query: 109      aatgcagatctttgtaaagaccttgactggtaagaccatcaccctggaagtggagcccag 168
                ||||||||||||||| ||||||||||| || ||||||||||||||||| |||||||||||
Sbjct: 29934423 aatgcagatctttgtgaagaccttgaccggcaagaccatcaccctggaggtggagcccag 29934364

                                                                            
Query: 169      tgacaccattgagaatgtcaaggggaagattcaagaaaaagagggca-tccccccagacc 227
                ||||||||  |               |||| || || || || |||| | ||||| ||||
Sbjct: 29934363 tgacaccaccg---------------agatccaggataaggaaggcattgccccccgacc 29934319

                                                                            
Query: 228      agcagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgactaca 287
                 ||||||||| |||||||| || |||| |||||| ||||| ||||| || ||||| ||||
Sbjct: 29934318 ggcagaggctcatctttgcaggcaagccgctggaggatggccgcactctttctgattaca 29934259

                                                     
Query: 288      acatccagaaggagtccaccctgcacctggtcctccg 324
                |||||||||| ||||||||||| || |||||||||||
Sbjct: 29934258 acatccagaaagagtccaccctccatctggtcctccg 29934222



 Score = 97.6 bits (49), Expect = 1e-17
 Identities = 67/73 (91%)
 Strand = Plus / Minus

                                                                            
Query: 1022     atgcagatcttcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccagc 1081
                ||||||||||| |||||||||||||| || ||||||||||||||||| ||||||||||| 
Sbjct: 29934422 atgcagatctttgtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagt 29934363

                             
Query: 1082     gacaccatcgaga 1094
                ||||||| |||||
Sbjct: 29934362 gacaccaccgaga 29934350


>Sscrofa_Chr15 
||          Length = 157681621

 Score =  105 bits (53), Expect = 5e-20
 Identities = 109/125 (87%), Gaps = 2/125 (1%)
 Strand = Plus / Plus

                                                                            
Query: 368      aagaccatcaccctggaagtggagcccagcgacaccatcgagaacgtcaaggcgaagatc 427
                ||||||||||||||||| ||||||||||| |||||||| ||||| || ||||| ||||||
Sbjct: 70557876 aagaccatcaccctggaggtggagcccagtgacaccat-gagaatgtgaaggccaagatc 70557934

                                                                            
Query: 428      caggacaaggaaggcatccccccagaccagcagaggctgatctttgccgggaagcagctg 487
                ||||| ||||||||||| ||  | ||||||||| |||| |||||||| || || ||||||
Sbjct: 70557935 caggataaggaaggcat-ccagctgaccagcagcggctcatctttgcaggcaaacagctg 70557993

                     
Query: 488      gaaga 492
                |||||
Sbjct: 70557994 gaaga 70557998



 Score =  105 bits (53), Expect = 5e-20
 Identities = 109/125 (87%), Gaps = 2/125 (1%)
 Strand = Plus / Plus

                                                                            
Query: 596      aagaccatcaccctggaagtggagcccagcgacaccatcgagaacgtcaaggcgaagatc 655
                ||||||||||||||||| ||||||||||| |||||||| ||||| || ||||| ||||||
Sbjct: 70557876 aagaccatcaccctggaggtggagcccagtgacaccat-gagaatgtgaaggccaagatc 70557934

                                                                            
Query: 656      caggacaaggaaggcatccccccagaccagcagaggctgatctttgccgggaagcagctg 715
                ||||| ||||||||||| ||  | ||||||||| |||| |||||||| || || ||||||
Sbjct: 70557935 caggataaggaaggcat-ccagctgaccagcagcggctcatctttgcaggcaaacagctg 70557993

                     
Query: 716      gaaga 720
                |||||
Sbjct: 70557994 gaaga 70557998



 Score =  105 bits (53), Expect = 5e-20
 Identities = 109/125 (87%), Gaps = 2/125 (1%)
 Strand = Plus / Plus

                                                                            
Query: 824      aagaccatcaccctggaagtggagcccagcgacaccatcgagaacgtcaaggcgaagatc 883
                ||||||||||||||||| ||||||||||| |||||||| ||||| || ||||| ||||||
Sbjct: 70557876 aagaccatcaccctggaggtggagcccagtgacaccat-gagaatgtgaaggccaagatc 70557934

                                                                            
Query: 884      caggacaaggaaggcatccccccagaccagcagaggctgatctttgccgggaagcagctg 943
                ||||| ||||||||||| ||  | ||||||||| |||| |||||||| || || ||||||
Sbjct: 70557935 caggataaggaaggcat-ccagctgaccagcagcggctcatctttgcaggcaaacagctg 70557993

                     
Query: 944      gaaga 948
                |||||
Sbjct: 70557994 gaaga 70557998



 Score = 81.8 bits (41), Expect = 8e-13
 Identities = 106/125 (84%), Gaps = 2/125 (1%)
 Strand = Plus / Plus

                                                                            
Query: 140      aagaccatcaccctggaagtggagcccagtgacaccattgagaatgtcaaggggaagatt 199
                ||||||||||||||||| ||||||||||||||||||| ||||||||| ||||  ||||| 
Sbjct: 70557876 aagaccatcaccctggaggtggagcccagtgacacca-tgagaatgtgaaggccaagatc 70557934

                                                                            
Query: 200      caagaaaaagagggcatccccccagaccagcagaggctgatctttgccgggaagcagctg 259
                || || || || ||||| ||  | ||||||||| |||| |||||||| || || ||||||
Sbjct: 70557935 caggataaggaaggcat-ccagctgaccagcagcggctcatctttgcaggcaaacagctg 70557993

                     
Query: 260      gaaga 264
                |||||
Sbjct: 70557994 gaaga 70557998



 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 67/75 (89%), Gaps = 1/75 (1%)
 Strand = Plus / Plus

                                                                            
Query: 1052     aagaccatcaccctggaagtggagcccagcgacaccatcgagaacgtcaaggcgaaaatc 1111
                ||||||||||||||||| ||||||||||| |||||||| ||||| || ||||| || |||
Sbjct: 70557876 aagaccatcaccctggaggtggagcccagtgacaccat-gagaatgtgaaggccaagatc 70557934

                               
Query: 1112     caggacaaggaaggc 1126
                ||||| |||||||||
Sbjct: 70557935 caggataaggaaggc 70557949


>Sscrofa_Chr02 
||          Length = 162569375

 Score = 95.6 bits (48), Expect = 5e-17
 Identities = 72/80 (90%)
 Strand = Plus / Plus

                                                                            
Query: 110      atgcagatctttgtaaagaccttgactggtaagaccatcaccctggaagtggagcccagt 169
                |||||||||||||| |||||| |||| || |||||||||||||| || || |||||||||
Sbjct: 59062540 atgcagatctttgtgaagaccctgacgggcaagaccatcacccttgaggtcgagcccagt 59062599

                                    
Query: 170      gacaccattgagaatgtcaa 189
                || |||||||||||||||||
Sbjct: 59062600 gataccattgagaatgtcaa 59062619



 Score = 91.7 bits (46), Expect = 8e-16
 Identities = 88/102 (86%)
 Strand = Plus / Plus

                                                                            
Query: 1021     gatgcagatcttcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccag 1080
                |||||||||||| ||||||||| |||| || |||||||||||||| || || ||||||||
Sbjct: 59062539 gatgcagatctttgtgaagaccctgacgggcaagaccatcacccttgaggtcgagcccag 59062598

                                                          
Query: 1081     cgacaccatcgagaacgtcaaggcgaaaatccaggacaagga 1122
                 || ||||| ||||| ||||| || ||||||||||| |||||
Sbjct: 59062599 tgataccattgagaatgtcaaagctaaaatccaggataagga 59062640



 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 87/102 (85%)
 Strand = Plus / Plus

                                                                            
Query: 337      gatgcagatcttcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccag 396
                |||||||||||| ||||||||| |||| || |||||||||||||| || || ||||||||
Sbjct: 59062539 gatgcagatctttgtgaagaccctgacgggcaagaccatcacccttgaggtcgagcccag 59062598

                                                          
Query: 397      cgacaccatcgagaacgtcaaggcgaagatccaggacaagga 438
                 || ||||| ||||| ||||| || || |||||||| |||||
Sbjct: 59062599 tgataccattgagaatgtcaaagctaaaatccaggataagga 59062640



 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 87/102 (85%)
 Strand = Plus / Plus

                                                                            
Query: 565      gatgcagatcttcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccag 624
                |||||||||||| ||||||||| |||| || |||||||||||||| || || ||||||||
Sbjct: 59062539 gatgcagatctttgtgaagaccctgacgggcaagaccatcacccttgaggtcgagcccag 59062598

                                                          
Query: 625      cgacaccatcgagaacgtcaaggcgaagatccaggacaagga 666
                 || ||||| ||||| ||||| || || |||||||| |||||
Sbjct: 59062599 tgataccattgagaatgtcaaagctaaaatccaggataagga 59062640



 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 87/102 (85%)
 Strand = Plus / Plus

                                                                            
Query: 793      gatgcagatcttcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccag 852
                |||||||||||| ||||||||| |||| || |||||||||||||| || || ||||||||
Sbjct: 59062539 gatgcagatctttgtgaagaccctgacgggcaagaccatcacccttgaggtcgagcccag 59062598

                                                          
Query: 853      cgacaccatcgagaacgtcaaggcgaagatccaggacaagga 894
                 || ||||| ||||| ||||| || || |||||||| |||||
Sbjct: 59062599 tgataccattgagaatgtcaaagctaaaatccaggataagga 59062640


>Sscrofa_Chr01 
||          Length = 315321322

 Score = 89.7 bits (45), Expect = 3e-15
 Identities = 96/113 (84%)
 Strand = Plus / Plus

                                                                             
Query: 422       aagatccaggacaaggaaggcatccccccagaccagcagaggctgatctttgccgggaag 481
                 ||||||||||| |||||||| || || || |||||||| || ||||||| ||| || |||
Sbjct: 286957927 aagatccaggataaggaaggaattcctcctgaccagcaaagactgatctctgctggcaag 286957986

                                                                      
Query: 482       cagctggaagatgggcgcaccctgtctgactacaacatccagaaggagtccac 534
                 || ||||||||||| || ||  |||||||||||||||| || |||||||||||
Sbjct: 286957987 caactggaagatggacgtactttgtctgactacaacattcaaaaggagtccac 286958039



 Score = 89.7 bits (45), Expect = 3e-15
 Identities = 96/113 (84%)
 Strand = Plus / Plus

                                                                             
Query: 650       aagatccaggacaaggaaggcatccccccagaccagcagaggctgatctttgccgggaag 709
                 ||||||||||| |||||||| || || || |||||||| || ||||||| ||| || |||
Sbjct: 286957927 aagatccaggataaggaaggaattcctcctgaccagcaaagactgatctctgctggcaag 286957986

                                                                      
Query: 710       cagctggaagatgggcgcaccctgtctgactacaacatccagaaggagtccac 762
                 || ||||||||||| || ||  |||||||||||||||| || |||||||||||
Sbjct: 286957987 caactggaagatggacgtactttgtctgactacaacattcaaaaggagtccac 286958039



 Score = 89.7 bits (45), Expect = 3e-15
 Identities = 96/113 (84%)
 Strand = Plus / Plus

                                                                             
Query: 878       aagatccaggacaaggaaggcatccccccagaccagcagaggctgatctttgccgggaag 937
                 ||||||||||| |||||||| || || || |||||||| || ||||||| ||| || |||
Sbjct: 286957927 aagatccaggataaggaaggaattcctcctgaccagcaaagactgatctctgctggcaag 286957986

                                                                      
Query: 938       cagctggaagatgggcgcaccctgtctgactacaacatccagaaggagtccac 990
                 || ||||||||||| || ||  |||||||||||||||| || |||||||||||
Sbjct: 286957987 caactggaagatggacgtactttgtctgactacaacattcaaaaggagtccac 286958039



 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 71/83 (85%)
 Strand = Plus / Plus

                                                                             
Query: 224       gaccagcagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgac 283
                 |||||||| || ||||||| ||| || ||||| ||||||||||| || ||  ||||||||
Sbjct: 286957957 gaccagcaaagactgatctctgctggcaagcaactggaagatggacgtactttgtctgac 286958016

                                        
Query: 284       tacaacatccagaaggagtccac 306
                 |||||||| || |||||||||||
Sbjct: 286958017 tacaacattcaaaaggagtccac 286958039


>Sscrofa_Chr03 
||          Length = 144787322

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                            
Query: 908      gaccagcagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgac 967
                |||||||| || ||||||||||| || ||||| ||||||||||| || ||  ||||||||
Sbjct: 90775262 gaccagcaaagactgatctttgctggcaagcaactggaagatggacgtactttgtctgac 90775203

                        
Query: 968      tacaacat 975
                ||||||||
Sbjct: 90775202 tacaacat 90775195



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                            
Query: 680      gaccagcagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgac 739
                |||||||| || ||||||||||| || ||||| ||||||||||| || ||  ||||||||
Sbjct: 90775262 gaccagcaaagactgatctttgctggcaagcaactggaagatggacgtactttgtctgac 90775203

                        
Query: 740      tacaacat 747
                ||||||||
Sbjct: 90775202 tacaacat 90775195



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                            
Query: 452      gaccagcagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgac 511
                |||||||| || ||||||||||| || ||||| ||||||||||| || ||  ||||||||
Sbjct: 90775262 gaccagcaaagactgatctttgctggcaagcaactggaagatggacgtactttgtctgac 90775203

                        
Query: 512      tacaacat 519
                ||||||||
Sbjct: 90775202 tacaacat 90775195



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                            
Query: 224      gaccagcagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgac 283
                |||||||| || ||||||||||| || ||||| ||||||||||| || ||  ||||||||
Sbjct: 90775262 gaccagcaaagactgatctttgctggcaagcaactggaagatggacgtactttgtctgac 90775203

                        
Query: 284      tacaacat 291
                ||||||||
Sbjct: 90775202 tacaacat 90775195


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,559,933
Number of extensions: 258
Number of successful extensions: 258
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 234
Number of HSP's successfully gapped: 39
Length of query: 1163
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1142
Effective length of database: 2,808,413,156
Effective search space: 3207207824152
Effective search space used: 3207207824152
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)