Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001767
(1436 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070309.1| major histocompatibility complex, class I [B... 533 e-151
Alignment gi|NP_001035588.1| MHC Class I JSP.1 [Bos taurus]. 332 2e-97
Alignment gi|NP_001033607.1| MHC class I heavy chain isoform 1 [Bos tauru... 333 3e-97
Alignment gi|NP_001108327.1| major histocompatibility complex, class I, A... 325 1e-93
Alignment gi|NP_001035622.1| MHC class I heavy chain isoform 2 [Bos tauru... 318 1e-93
Alignment gi|NP_001137215.1| hypothetical protein LOC790811 [Bos taurus]. 320 3e-93
Alignment gi|NP_001035644.1| major histocompatibility complex, class I, A... 321 1e-92
Alignment gi|NP_001098957.1| hypothetical protein LOC100125916 [Bos tauru... 321 3e-92
Alignment gi|NP_001099121.1| BOLA class I histocompatibility antigen, alp... 323 1e-91
Alignment gi|XP_002697395.1| PREDICTED: MHC class I heavy chain [Bos taur... 315 7e-91
>ref|NP_001070309.1| major histocompatibility complex, class I [Bos taurus].
Length = 353
Score = 533 bits (1374), Expect = e-151
Identities = 248/311 (79%), Positives = 272/311 (87%)
Frame = +2
Query: 113 MWWAPVLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEE 292
M W PVLL+ FL+ L ET+ R+HSLQYFY +SE PGVP+F AFG +D+QPFIRYD+EE
Sbjct: 1 MLWGPVLLYFFLAYLPETQTRSHSLQYFYSVVSEPGPGVPSFMAFGFVDNQPFIRYDSEE 60
Query: 293 MKAKSCVQWLREEPSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTG 472
MKAKSCV WLREEPSYF+DETKIFTSRMKIF LNLRNVQ+YYNQT E+GLN+AL KQT
Sbjct: 61 MKAKSCVHWLREEPSYFDDETKIFTSRMKIFHLNLRNVQQYYNQTKEDGLNRALAQKQTS 120
Query: 473 PHTLQFNYGCELQQDGRTSGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRN 652
PHTLQF YGCEL +DGRT+ HWQYGYDG DYLSLH+DPLQYTAATF+AQYTKQKWEA N
Sbjct: 121 PHTLQFTYGCELLEDGRTTWHWQYGYDGEDYLSLHMDPLQYTAATFVAQYTKQKWEAGGN 180
Query: 653 FIERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPK 832
FIERDKNYLEKECI+WL RYL F GESLNRT+PPKTH+T H SD VTLRCWALGFYP
Sbjct: 181 FIERDKNYLEKECILWLWRYLTFGGESLNRTEPPKTHMTHHRISDREVTLRCWALGFYPA 240
Query: 833 EISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLT 1012
+ISLTWQREG+DQ+QDMELVETRPSGDGTFQKWAALVVP GEEQ YTC VQHEGLQEPLT
Sbjct: 241 KISLTWQREGEDQTQDMELVETRPSGDGTFQKWAALVVPSGEEQKYTCRVQHEGLQEPLT 300
Query: 1013 LRWEPPQPPVP 1045
LRWEP + VP
Sbjct: 301 LRWEPLKTSVP 311
>ref|NP_001035588.1| MHC Class I JSP.1 [Bos taurus].
Length = 359
Score = 332 bits (852), Expect(2) = 2e-97
Identities = 167/306 (54%), Positives = 210/306 (68%), Gaps = 4/306 (1%)
Frame = +2
Query: 128 VLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNE--EMKA 301
+LL S + L ETRA +HSL+YFY A+S G P F G +DD F+R+D++ + +
Sbjct: 7 LLLLSGVLVLTETRAGSHSLRYFYTAVSRPGLGEPRFIIVGYVDDTQFVRFDSDAGDPRV 66
Query: 302 KSCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPH 478
+ +W+ +E P Y++ ET+ + FRL L ++ YYNQ+ + G H
Sbjct: 67 EPRARWVEQEGPEYWDQETRKAKDHAQFFRLGLNTLRGYYNQS------------EAGSH 114
Query: 479 TLQFNYGCELQQDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNF 655
TLQ+ YGC++ DGR G WQ+GY+G DY++L+ D +TAA AQ +K+KWEA +
Sbjct: 115 TLQWMYGCDVGPDGRLLRGFWQFGYEGRDYIALNEDLRSWTAADTAAQISKRKWEA-ADV 173
Query: 656 IERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKE 835
ER +NYLE C+ WL RYLE ++L R DPPK HVT HP S VTLRCWALGFYP+E
Sbjct: 174 AERQRNYLEGTCVEWLPRYLENGKDTLLRADPPKAHVTHHPISGREVTLRCWALGFYPEE 233
Query: 836 ISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTL 1015
ISLTWQR G+DQ+QDMELVETRPSGDGTFQKW ALVVP GEEQ YTC VQHEGLQEPLTL
Sbjct: 234 ISLTWQRNGEDQTQDMELVETRPSGDGTFQKWVALVVPSGEEQRYTCSVQHEGLQEPLTL 293
Query: 1016 RWEPPQ 1033
RWEPPQ
Sbjct: 294 RWEPPQ 299
Score = 43.1 bits (100), Expect(2) = 2e-97
Identities = 20/29 (68%), Positives = 22/29 (75%)
Frame = +1
Query: 1114 WEKKRSGEKGGSYTQAAGRDSTQSSGVSL 1200
W KKRSGEKGG+Y QA+ DS Q S VSL
Sbjct: 326 WMKKRSGEKGGNYIQASRSDSAQGSDVSL 354
>ref|NP_001033607.1| MHC class I heavy chain isoform 1 [Bos taurus].
Length = 361
Score = 333 bits (854), Expect(2) = 3e-97
Identities = 170/306 (55%), Positives = 211/306 (68%), Gaps = 4/306 (1%)
Frame = +2
Query: 128 VLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNE--EMKA 301
+LL S + L ET A +HSL+YFY +S G P F A G +DD F+R+D++ + +
Sbjct: 10 LLLLSGVLVLTETLAGSHSLRYFYTGVSRPGLGEPRFIAVGYVDDTQFVRFDSDAADPRT 69
Query: 302 KSCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPH 478
+ V W+ +E P Y++ ET+ + FR+NL + YYNQ+ + G H
Sbjct: 70 EPRVPWMEQEGPEYWDRETRNLKDAAQTFRVNLNTLLGYYNQS------------EAGSH 117
Query: 479 TLQFNYGCELQQDGR-TSGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNF 655
TLQ+ YGC+++ DGR G+ Q YDG DY++L+ D +TAA AQ TK+KWEA
Sbjct: 118 TLQWMYGCDVEPDGRFLRGYRQDAYDGRDYIALNQDLRSWTAADTAAQITKRKWEAAGE- 176
Query: 656 IERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKE 835
ER +NYLE C+ WLRRYLE ++L R DPPK HVTRHPSSD VTLRCWALGFYP+E
Sbjct: 177 AERRRNYLEGRCVEWLRRYLENGKDTLLRADPPKAHVTRHPSSDREVTLRCWALGFYPEE 236
Query: 836 ISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTL 1015
ISLTWQ G+DQ+QDMELVETRPSGDGTFQKWAALVVP GEEQ YTC VQHEGL+EPLTL
Sbjct: 237 ISLTWQHNGEDQTQDMELVETRPSGDGTFQKWAALVVPSGEEQRYTCRVQHEGLREPLTL 296
Query: 1016 RWEPPQ 1033
RWEPPQ
Sbjct: 297 RWEPPQ 302
Score = 42.0 bits (97), Expect(2) = 3e-97
Identities = 20/29 (68%), Positives = 20/29 (68%)
Frame = +1
Query: 1114 WEKKRSGEKGGSYTQAAGRDSTQSSGVSL 1200
W KK SGEKG YTQAA DS Q S VSL
Sbjct: 328 WRKKHSGEKGRIYTQAASSDSAQGSDVSL 356
>ref|NP_001108327.1| major histocompatibility complex, class I, A [Bos taurus].
Length = 363
Score = 325 bits (833), Expect(2) = 1e-93
Identities = 162/300 (54%), Positives = 206/300 (68%), Gaps = 3/300 (1%)
Frame = +2
Query: 155 LQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNE--EMKAKSCVQWLRE 328
L ETRA +HSL+YFY A+S G P F + G +DD F+R+D++ + + + +W+ +
Sbjct: 20 LTETRAGSHSLRYFYTAVSRPGLGEPRFISVGYVDDTQFVRFDSDAPDPRIEPTARWVEQ 79
Query: 329 E-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPHTLQFNYGCE 505
E P Y++ ET+ + FR+ L ++ YYNQ+ + G HT+Q YGC+
Sbjct: 80 EGPEYWHQETQRTKDTAQFFRVYLNTLRGYYNQS------------EAGSHTVQEMYGCD 127
Query: 506 LQQDGRTSGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNFIERDKNYLEK 685
+ DG G+ Q+ YDG DY++L+ D +TAA AQ TK EA + R + YLE
Sbjct: 128 VGPDGLLRGYDQFAYDGRDYIALNEDLRSWTAADTAAQVTKHNAEAAGD-AARVRIYLEG 186
Query: 686 ECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQ 865
+C+ WLRRYL ++L R DPPKTHV HP SD VTLRCWALGFYP+EISLTWQR+G+
Sbjct: 187 KCVEWLRRYLVTGKDTLLRADPPKTHVAHHPISDREVTLRCWALGFYPEEISLTWQRDGE 246
Query: 866 DQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWEPPQPPVP 1045
DQ+QDMELVETRPSGDGTFQKWAALVVP GEEQ YTCHVQHEGLQEPLTLRWEPPQP +P
Sbjct: 247 DQTQDMELVETRPSGDGTFQKWAALVVPSGEEQRYTCHVQHEGLQEPLTLRWEPPQPSIP 306
Score = 38.1 bits (87), Expect(2) = 1e-93
Identities = 21/53 (39%), Positives = 24/53 (45%)
Frame = +1
Query: 1042 PIVGIFXXXXXXXXXXXXXXXXXSWEKKRSGEKGGSYTQAAGRDSTQSSGVSL 1200
PI+GI W KK SGEKG Y+QA+ DS Q S V L
Sbjct: 306 PIMGIIVGLVHLMVTGAMVTGAVIWRKKHSGEKGRIYSQASSSDSDQGSDVPL 358
>ref|NP_001035622.1| MHC class I heavy chain isoform 2 [Bos taurus].
Length = 358
Score = 318 bits (816), Expect(2) = 1e-93
Identities = 165/306 (53%), Positives = 208/306 (67%), Gaps = 4/306 (1%)
Frame = +2
Query: 128 VLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNE--EMKA 301
+LL S + L ET A +HSL+YF A+S G P F A G +DD F R+D++ +
Sbjct: 7 LLLLSGVLVLTETLAGSHSLRYFSTAVSRPGLGEPRFIAVGYVDDTQFTRFDSDAPNPRE 66
Query: 302 KSCVQWLREEP-SYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPH 478
+ V W+ +E Y++ T+I+ + FR+ L ++ YYNQ+ + G H
Sbjct: 67 EPRVPWMEQEGLEYWDRNTRIYKDTAQTFRVYLNALRGYYNQS------------EAGSH 114
Query: 479 TLQFNYGCELQQDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNF 655
TLQ+ GC++ DGR G WQ+GYDG +Y++L+ D +TAA AQ TK+KWEA
Sbjct: 115 TLQWMSGCDVGPDGRLLRGFWQFGYDGRNYIALNEDLRSWTAADTAAQITKRKWEA-AGA 173
Query: 656 IERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKE 835
E ++NY+E C+ LRRYLE ++L R DPPK HVT HP S+ VTLRCWALGFYP+E
Sbjct: 174 AEGERNYVEGRCVEGLRRYLENGKDALLRADPPKAHVTHHPISEREVTLRCWALGFYPEE 233
Query: 836 ISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTL 1015
ISLTWQREG+DQ+QDMELVETRPSGDGTFQKWAALVVP GEEQ YTC VQHEGLQEPLTL
Sbjct: 234 ISLTWQREGEDQTQDMELVETRPSGDGTFQKWAALVVPSGEEQRYTCRVQHEGLQEPLTL 293
Query: 1016 RWEPPQ 1033
RWEPPQ
Sbjct: 294 RWEPPQ 299
Score = 44.7 bits (104), Expect(2) = 1e-93
Identities = 21/29 (72%), Positives = 22/29 (75%)
Frame = +1
Query: 1114 WEKKRSGEKGGSYTQAAGRDSTQSSGVSL 1200
W KKRSGEKG YTQAA DSTQ S +SL
Sbjct: 325 WRKKRSGEKGRIYTQAASSDSTQGSDMSL 353
>ref|NP_001137215.1| hypothetical protein LOC790811 [Bos taurus].
Length = 361
Score = 320 bits (821), Expect(2) = 3e-93
Identities = 164/308 (53%), Positives = 209/308 (67%), Gaps = 4/308 (1%)
Frame = +2
Query: 128 VLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNE--EMKA 301
+LL S + L TRA +HS++YF A+S G P + G +DD F+R+D++ +
Sbjct: 10 LLLLSGVLVLTGTRAGSHSMRYFSTAVSRPGLGEPQYLEVGYVDDTQFVRFDSDAPNPRM 69
Query: 302 KSCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPH 478
+ +W+++E P Y+++ET+ ++FR+NL ++ YYNQ+ + G H
Sbjct: 70 EPRARWVKQEGPEYWDEETQRAKGITQVFRVNLNTLRGYYNQS------------EAGSH 117
Query: 479 TLQFNYGCELQQDGRTS-GHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNF 655
TLQ+ GC++ DGR G WQ+GYDG DYL+L+ D +TAA AQ +K+K EA
Sbjct: 118 TLQWMCGCDVGPDGRLRRGFWQFGYDGRDYLALNEDLRSWTAADTGAQISKRKMEA-AGA 176
Query: 656 IERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKE 835
E + Y+E C+ WLRRYLE ++L R DPPK HVT HP SD VTLRCWALGFYPKE
Sbjct: 177 AESGRKYVEGTCVEWLRRYLENGKDTLLRADPPKAHVTHHPISDHEVTLRCWALGFYPKE 236
Query: 836 ISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTL 1015
ISLTWQR G+DQ+QDMELVETRPSGDG FQKWAALVVP GEEQ YTC VQHEGLQEPLTL
Sbjct: 237 ISLTWQRNGEDQTQDMELVETRPSGDGNFQKWAALVVPSGEEQRYTCRVQHEGLQEPLTL 296
Query: 1016 RWEPPQPP 1039
RWEPPQ P
Sbjct: 297 RWEPPQTP 304
Score = 41.2 bits (95), Expect(2) = 3e-93
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = +1
Query: 1114 WEKKRSGEKGGSYTQAAGRDSTQSSGVSL 1200
W KK SGEKG +YTQA+ DS Q S VSL
Sbjct: 328 WRKKCSGEKGRTYTQASSNDSAQGSDVSL 356
>ref|NP_001035644.1| major histocompatibility complex, class I, A [Bos taurus].
Length = 362
Score = 321 bits (822), Expect(2) = 1e-92
Identities = 161/300 (53%), Positives = 204/300 (68%), Gaps = 3/300 (1%)
Frame = +2
Query: 155 LQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNE--EMKAKSCVQWLRE 328
L ET A +HSL+YFY A+S G P F + G +DD F+R+D++ + + + +W+ +
Sbjct: 19 LTETWAGSHSLRYFYTAVSRPGLGEPRFISVGYVDDTQFVRFDSDAPDPRIEPTARWVEQ 78
Query: 329 E-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPHTLQFNYGCE 505
E P Y++ ET+ + FR+ L ++ YYNQ+ + G HT+Q YGC+
Sbjct: 79 EGPEYWHQETQRTKDTAQFFRVYLNTLRGYYNQS------------EAGSHTVQEMYGCD 126
Query: 506 LQQDGRTSGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNFIERDKNYLEK 685
+ DG G+ Q+ YDG DY++L+ D +TAA AQ TK EA + R + YLE
Sbjct: 127 VGPDGLLRGYDQFAYDGRDYIALNEDLRSWTAADTAAQVTKHNAEAAGD-AARVRIYLEG 185
Query: 686 ECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQ 865
+C+ WLRRYL ++L R DPPKTHV HP SD VTLRCWALGFYP EISLTWQR+G+
Sbjct: 186 KCVEWLRRYLVTGKDTLLRADPPKTHVAHHPISDHEVTLRCWALGFYPDEISLTWQRDGE 245
Query: 866 DQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWEPPQPPVP 1045
DQ+QDMELVETRPSGDGTFQKWAALVVP GEEQ YTCHVQHEGLQEPLTLRWEPPQP +P
Sbjct: 246 DQTQDMELVETRPSGDGTFQKWAALVVPSGEEQRYTCHVQHEGLQEPLTLRWEPPQPSIP 305
Score = 38.9 bits (89), Expect(2) = 1e-92
Identities = 22/54 (40%), Positives = 24/54 (44%)
Frame = +1
Query: 1042 PIVGIFXXXXXXXXXXXXXXXXXSWEKKRSGEKGGSYTQAAGRDSTQSSGVSLI 1203
PI+GI W KK SGEKG YTQ A S Q S VSL+
Sbjct: 305 PIMGIIVGLVLLMVTGAVVTGAMIWRKKHSGEKGRGYTQTASSYSDQGSDVSLM 358
>ref|NP_001098957.1| hypothetical protein LOC100125916 [Bos taurus].
Length = 363
Score = 321 bits (823), Expect(2) = 3e-92
Identities = 165/307 (53%), Positives = 208/307 (67%), Gaps = 4/307 (1%)
Frame = +2
Query: 128 VLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNE--EMKA 301
+LL S + L ETRA +HSL+YFY A+S G P F + G +DD F+R+D++ +
Sbjct: 10 LLLLSGVLVLTETRAGSHSLRYFYTAVSRPGLGEPRFISVGYVDDTQFVRFDSDAPNPRM 69
Query: 302 KSCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPH 478
+ +W+ +E P Y++ ET+ + FR++L ++ YYNQ+ + G H
Sbjct: 70 EPRARWVEQEGPEYWDRETRNSKDTAQGFRVDLNTLRGYYNQS------------EAGSH 117
Query: 479 TLQFNYGCELQQDGRTS-GHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNF 655
TLQ YGC + DG G QYGYDG DYL+L+ D +TA +AQ +K+K EA
Sbjct: 118 TLQLMYGCYVGPDGSLRRGFTQYGYDGRDYLALNEDLRSWTAVETMAQISKRKVEA-AGV 176
Query: 656 IERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKE 835
E+ +NYLE C+ WLRRYLE ++L R DPPK HVTRHP S VTLRCWALGFYP+E
Sbjct: 177 AEKQRNYLEGRCVEWLRRYLENGKDTLLRADPPKAHVTRHPISGREVTLRCWALGFYPEE 236
Query: 836 ISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTL 1015
ISLTWQR G+DQ+QDMELVETRPSGDG FQKWAAL+VP GEEQ YTC VQHEGLQEPLTL
Sbjct: 237 ISLTWQRNGEDQTQDMELVETRPSGDGNFQKWAALLVPSGEEQKYTCQVQHEGLQEPLTL 296
Query: 1016 RWEPPQP 1036
+WEPPQP
Sbjct: 297 KWEPPQP 303
Score = 37.4 bits (85), Expect(2) = 3e-92
Identities = 18/27 (66%), Positives = 20/27 (74%)
Frame = +1
Query: 1120 KKRSGEKGGSYTQAAGRDSTQSSGVSL 1200
KKRSGEK G+Y QA+ DS Q S VSL
Sbjct: 332 KKRSGEKRGTYIQASSSDSAQGSDVSL 358
>ref|NP_001099121.1| BOLA class I histocompatibility antigen, alpha chain BL3-6 precursor
[Bos taurus].
Length = 360
Score = 323 bits (827), Expect(2) = 1e-91
Identities = 164/307 (53%), Positives = 209/307 (68%), Gaps = 4/307 (1%)
Frame = +2
Query: 128 VLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEEM--KA 301
+LL S + L ETRA +HS++YF A+S G P + G +DD F+R+D++ +
Sbjct: 7 LLLLSGVLVLTETRAGSHSMRYFSTAVSRPGFGEPRYLEVGYVDDTQFVRFDSDARNPRM 66
Query: 302 KSCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPH 478
+ +W+++E P Y++ T+ + FR+ L ++ YYNQ+ + G H
Sbjct: 67 EPRTRWVKQEGPEYWDRNTRNAKGNAQSFRVGLNTLRGYYNQS------------EAGSH 114
Query: 479 TLQFNYGCELQQDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNF 655
TLQ+ GC + DGR G QYGYDG DYL+L+ D +TAA AQ TK+KWEA+ +
Sbjct: 115 TLQWMSGCYVGPDGRLLRGFMQYGYDGRDYLALNEDLRSWTAADTEAQITKRKWEAE-GY 173
Query: 656 IERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKE 835
E +NYLE EC+ WLRR++E ++L R DPPK HVT HP SD VTLRCWALGFYP+E
Sbjct: 174 AEVQRNYLEGECVEWLRRHMENGKDTLLRADPPKAHVTHHPISDREVTLRCWALGFYPEE 233
Query: 836 ISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTL 1015
ISLTWQ G+DQ+QDMELVETRPSGDGTFQKWAALVVP GEEQ YTC VQHEGLQEPLTL
Sbjct: 234 ISLTWQHNGEDQTQDMELVETRPSGDGTFQKWAALVVPSGEEQKYTCRVQHEGLQEPLTL 293
Query: 1016 RWEPPQP 1036
+WEPPQP
Sbjct: 294 KWEPPQP 300
Score = 33.9 bits (76), Expect(2) = 1e-91
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = +1
Query: 1120 KKRSGEKGGSYTQAAGRDSTQSSGVSL 1200
KK SGEK G+Y QA DS Q S VSL
Sbjct: 329 KKPSGEKRGTYIQALSSDSAQGSDVSL 355
>ref|XP_002697395.1| PREDICTED: MHC class I heavy chain [Bos taurus].
Length = 437
Score = 315 bits (807), Expect(2) = 7e-91
Identities = 161/310 (51%), Positives = 205/310 (66%), Gaps = 4/310 (1%)
Frame = +2
Query: 128 VLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNE--EMKA 301
+LL S + L ET A +HSL YF +S G P F A G +DD F R+D++ +
Sbjct: 84 LLLLSEVLVLTETWAGSHSLSYFCTCVSRPGLGEPRFFAVGYVDDTQFARFDSDAPNPRM 143
Query: 302 KSCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPH 478
+ W+ +E P Y+ T+ + R L ++ +YNQ+ + G H
Sbjct: 144 EPRAPWMEQEGPEYWEAMTRDAKKAQQRLRTGLNTLRGFYNQS------------EAGSH 191
Query: 479 TLQFNYGCELQQDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNF 655
TLQ+ +GC++ +GR G WQ YDGADYL+L+ D +TAA +AQ TK+KWE
Sbjct: 192 TLQWVFGCDVGPEGRLLRGIWQNAYDGADYLALNEDLRSWTAANTVAQITKRKWETSGE- 250
Query: 656 IERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKE 835
E +NYLE +C+ WL R+LE ++L R DPPKTHV HP SD VTLRCWALGFYP+E
Sbjct: 251 AEFQRNYLEVKCVQWLLRHLETGKDTLLRADPPKTHVAHHPISDREVTLRCWALGFYPEE 310
Query: 836 ISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTL 1015
ISLTWQ++G+DQ+QDMELVETRPSGDGTFQKWAALVVP GEEQ YTCHVQHEGLQEPL+L
Sbjct: 311 ISLTWQQDGEDQTQDMELVETRPSGDGTFQKWAALVVPSGEEQRYTCHVQHEGLQEPLSL 370
Query: 1016 RWEPPQPPVP 1045
RW+PPQP +P
Sbjct: 371 RWKPPQPSIP 380
Score = 38.9 bits (89), Expect(2) = 7e-91
Identities = 21/54 (38%), Positives = 24/54 (44%)
Frame = +1
Query: 1042 PIVGIFXXXXXXXXXXXXXXXXXSWEKKRSGEKGGSYTQAAGRDSTQSSGVSLI 1203
PI+GI W K SG+ G YTQAA DS Q S VSL+
Sbjct: 380 PIMGIIVGLVLLMVTGAVVTGAVIWRNKHSGQTGRGYTQAASSDSAQGSDVSLM 433
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 59,062,228
Number of extensions: 1733936
Number of successful extensions: 8348
Number of sequences better than 1.0e-05: 99
Number of HSP's gapped: 8181
Number of HSP's successfully gapped: 121
Length of query: 478
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 372
Effective length of database: 14,174,046
Effective search space: 5272745112
Effective search space used: 5272745112
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001767
(1436 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014767.1| MHC class I DLA-88 [Canis lupus familiaris]. 303 1e-86
Alignment gi|NP_001014401.1| MHC class I DLA-12 [Canis lupus familiaris]. 293 1e-83
Alignment gi|NP_001014400.1| MHC class I DLA-64 [Canis lupus familiaris]. 283 1e-80
Alignment gi|XP_855624.1| PREDICTED: MHC class Ib [Canis familiaris]. 271 1e-77
Alignment gi|NP_001018646.1| MHC class Ib [Canis lupus familiaris]. 271 1e-77
Alignment gi|XP_536867.2| PREDICTED: similar to Zinc-alpha-2-glycoprotein... 191 1e-48
Alignment gi|XP_533618.2| PREDICTED: similar to IgG receptor FcRn large s... 115 1e-25
Alignment gi|XP_849737.1| PREDICTED: similar to HLA class II histocompati... 75 2e-13
Alignment gi|NP_001014403.1| major histocompatibility complex, class II, ... 70 7e-12
Alignment gi|XP_850803.1| PREDICTED: similar to HLA class II histocompati... 68 2e-11
>ref|NP_001014767.1| MHC class I DLA-88 [Canis lupus familiaris].
Length = 361
Score = 303 bits (777), Expect(2) = 1e-86
Identities = 154/306 (50%), Positives = 204/306 (66%), Gaps = 4/306 (1%)
Frame = +2
Query: 122 APVLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEEM-- 295
A ++L S ++ TRA +HSL+YFY ++S G P F A G +DD F+R+D++
Sbjct: 8 ALLVLLSAALAVTLTRAGSHSLRYFYTSVSRPGRGDPRFIAVGYVDDTQFVRFDSDAATG 67
Query: 296 KAKSCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTG 472
+ + W+ +E P Y++ ET+ + +R++L ++ YYNQ+ + G
Sbjct: 68 RMEPRAPWMEQEGPEYWDRETRTVKETAQRYRVDLDTLRGYYNQS------------EAG 115
Query: 473 PHTLQFNYGCELQQDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADR 649
HT Q YGC+L GR G+ Q YDGADY++L+ D +TAA AQ T++KWEA
Sbjct: 116 SHTRQTMYGCDLGPGGRLLRGYSQDAYDGADYIALNEDLRSWTAADTAAQITRRKWEA-A 174
Query: 650 NFIERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYP 829
E D+NYLE C+ WLRRYLE E+L R +PP T VTRHP SD VTLRCWALGFYP
Sbjct: 175 GTAEHDRNYLETTCVEWLRRYLEMGKETLLRAEPPSTRVTRHPISDHEVTLRCWALGFYP 234
Query: 830 KEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPL 1009
EI+LTWQR+G+DQ+QD E+V+TRP+GDGTFQKWAA+VVP G+EQ YTCHVQHEGL EP+
Sbjct: 235 AEITLTWQRDGEDQTQDTEVVDTRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLAEPV 294
Query: 1010 TLRWEP 1027
T RWEP
Sbjct: 295 TRRWEP 300
Score = 36.6 bits (83), Expect(2) = 1e-86
Identities = 20/35 (57%), Positives = 22/35 (62%)
Frame = +1
Query: 1114 WEKKRSGEKGGSYTQAAGRDSTQSSGVSLIKDPRV 1218
W K+RSG KG Y+ AA DS Q S VSL PRV
Sbjct: 328 WRKQRSGGKGPGYSHAARDDSAQGSDVSLTA-PRV 361
>ref|NP_001014401.1| MHC class I DLA-12 [Canis lupus familiaris].
Length = 358
Score = 293 bits (751), Expect(2) = 1e-83
Identities = 151/305 (49%), Positives = 202/305 (66%), Gaps = 6/305 (1%)
Frame = +2
Query: 131 LLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEEM--KAK 304
LL S ++ TRA +HSL+YFY ++S G P F A G +DD F+R+D++ + +
Sbjct: 8 LLLSGALAVTLTRAGSHSLRYFYTSVSRPGRGDPRFIAVGYVDDTQFVRFDSDAATGRME 67
Query: 305 SCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPHT 481
W+ +E P Y++ +T+ + FR++L ++ YYNQ+ + G HT
Sbjct: 68 PRAPWVEQEGPEYWDPQTRTIKETARTFRVDLDTLRGYYNQS------------EAGSHT 115
Query: 482 LQFNYGCELQQDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEA--DRN 652
Q+ +GC+L GR G+ Q YDGADY++L+ D +TAA AQ T++K EA D
Sbjct: 116 FQWMFGCDLGPGGRLLRGYSQDAYDGADYIALNEDLRSWTAADAAAQITRRKREAAGDAG 175
Query: 653 FIERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPK 832
+ +NYLE C+ WLRRYLE E+L R +PP T VTRHP SD VTLRCWALGFYP
Sbjct: 176 HL---RNYLETTCVEWLRRYLEMGKETLLRAEPPSTRVTRHPVSDHEVTLRCWALGFYPA 232
Query: 833 EISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLT 1012
EI+LTWQR+G+DQ+QD E+V+TRP+GDGTFQKWAA+VVP G+EQ YTCHVQHEGL EP+T
Sbjct: 233 EITLTWQRDGEDQTQDTEVVDTRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLVEPVT 292
Query: 1013 LRWEP 1027
RWEP
Sbjct: 293 RRWEP 297
Score = 36.6 bits (83), Expect(2) = 1e-83
Identities = 20/35 (57%), Positives = 22/35 (62%)
Frame = +1
Query: 1114 WEKKRSGEKGGSYTQAAGRDSTQSSGVSLIKDPRV 1218
W K+RSG KG Y+ AA DS Q S VSL PRV
Sbjct: 325 WRKQRSGGKGPGYSHAARDDSAQGSDVSLTA-PRV 358
>ref|NP_001014400.1| MHC class I DLA-64 [Canis lupus familiaris].
Length = 361
Score = 283 bits (724), Expect(2) = 1e-80
Identities = 145/306 (47%), Positives = 202/306 (66%), Gaps = 4/306 (1%)
Frame = +2
Query: 122 APVLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEEM-- 295
A ++L S ++ TRA +HSL++F+ A+S G P + + G +DD F+R++++
Sbjct: 8 ALLVLLSAALAVTLTRAGSHSLRFFHTAVSRPGRGDPLYISVGYVDDTQFLRFNSDAASP 67
Query: 296 KAKSCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTG 472
K + +W+ +E P ++ ++T+I + R NL+ YYNQ+ + G
Sbjct: 68 KVEPRARWMEQEGPEFWEEQTEIAKVHAQTSRSNLQTALGYYNQS------------EAG 115
Query: 473 PHTLQFNYGCELQQDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADR 649
HT Q+ GC++ DGR G+ Q+ YDGADYL+L D +TAA AQ T++KWEA
Sbjct: 116 SHTFQWTSGCDVGPDGRLLRGYEQFAYDGADYLALDEDLRSWTAADAAAQITRRKWEA-A 174
Query: 650 NFIERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYP 829
+ + YL+ EC+ L +YLE E+L TDPPK ++TRHP SD VTLRCWALGFYP
Sbjct: 175 GAAQYYRVYLQGECVQSLLKYLERGKETLQLTDPPKIYLTRHPISDHEVTLRCWALGFYP 234
Query: 830 KEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPL 1009
EI+LTWQR+G+DQ+QD E+V+TRP+GDGTFQKWAA+VVP G+EQ YTCHVQHEGL EP+
Sbjct: 235 AEITLTWQRDGEDQTQDTEVVDTRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLAEPV 294
Query: 1010 TLRWEP 1027
T RWEP
Sbjct: 295 TRRWEP 300
Score = 36.6 bits (83), Expect(2) = 1e-80
Identities = 20/35 (57%), Positives = 22/35 (62%)
Frame = +1
Query: 1114 WEKKRSGEKGGSYTQAAGRDSTQSSGVSLIKDPRV 1218
W K+RSG KG Y+ AA DS Q S VSL PRV
Sbjct: 328 WRKQRSGGKGPGYSHAARDDSAQGSDVSLTA-PRV 361
>ref|XP_855624.1| PREDICTED: MHC class Ib [Canis familiaris].
Length = 381
Score = 271 bits (693), Expect(2) = 1e-77
Identities = 145/312 (46%), Positives = 194/312 (62%), Gaps = 6/312 (1%)
Frame = +2
Query: 128 VLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEE--MKA 301
+LL S L +T A +HSL++ +S G P A +DD PF R+++E +
Sbjct: 15 LLLLSGTLGLAQTSAGSHSLRFLNTVVSRPGHGEPRHWAVAYVDDTPFERFNSEREGRRP 74
Query: 302 KSCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNV-QRYYNQTMENGLNKALEHKQTGP 475
+ V+WL +E P Y+ + T + ++ R L V Q Y NQ+ +TG
Sbjct: 75 EPLVRWLEQEGPEYWEERTLNSRTCTQVLRRTLNEVSQDYSNQS------------RTGS 122
Query: 476 HTLQFNYGCELQQDGR-TSGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRN 652
HT Q GC++ DGR G+ ++ YDG DY++L D + +AQ T++KW+A
Sbjct: 123 HTFQTITGCDVGPDGRFLRGYQRHAYDGLDYITLSEDLRSWIVEDPVAQITRRKWDA-AT 181
Query: 653 FIERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPK 832
E KN+LE C+ WLRR+LE E+L R DPPKT VTR P S+ VTL+CWALGFYP
Sbjct: 182 VAENRKNFLEGRCLEWLRRHLENGRETLQRADPPKTSVTRRPISEHEVTLKCWALGFYPA 241
Query: 833 EISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLT 1012
EI+LTWQR+G+DQ+QD ELVETRP GDGTFQKWAA+VVP GEEQ YTCH+ H+ L +P+T
Sbjct: 242 EITLTWQRDGEDQTQDTELVETRPGGDGTFQKWAAVVVPSGEEQRYTCHILHKSLPKPIT 301
Query: 1013 LRWE-PPQPPVP 1045
LRWE PPQ +P
Sbjct: 302 LRWEPPPQSTIP 313
Score = 38.9 bits (89), Expect(2) = 1e-77
Identities = 23/45 (51%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Frame = +1
Query: 1114 WEKKRSGEKGGSYTQAA---GRDSTQSSGVSLIKDPRV*DSCLVG 1239
W KK SG KGGSY+QA G S Q S +S++ P SCLVG
Sbjct: 337 WRKKHSGRKGGSYSQAENKYGGSSAQDSQMSVMA-PNEQASCLVG 380
>ref|NP_001018646.1| MHC class Ib [Canis lupus familiaris].
Length = 381
Score = 271 bits (693), Expect(2) = 1e-77
Identities = 145/312 (46%), Positives = 194/312 (62%), Gaps = 6/312 (1%)
Frame = +2
Query: 128 VLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEE--MKA 301
+LL S L +T A +HSL++ +S G P A +DD PF R+++E +
Sbjct: 15 LLLLSGTLGLAQTSAGSHSLRFLNTVVSRPGHGEPRHWAVAYVDDTPFERFNSEREGRRP 74
Query: 302 KSCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNV-QRYYNQTMENGLNKALEHKQTGP 475
+ V+WL +E P Y+ + T + ++ R L V Q Y NQ+ +TG
Sbjct: 75 EPLVRWLEQEGPEYWEERTLNSRTCTQVLRRTLNEVSQDYSNQS------------RTGS 122
Query: 476 HTLQFNYGCELQQDGR-TSGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRN 652
HT Q GC++ DGR G+ ++ YDG DY++L D + +AQ T++KW+A
Sbjct: 123 HTFQTITGCDVGPDGRFLRGYQRHAYDGLDYITLSEDLRSWIVEDPVAQITRRKWDA-AT 181
Query: 653 FIERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPK 832
E KN+LE C+ WLRR+LE E+L R DPPKT VTR P S+ VTL+CWALGFYP
Sbjct: 182 VAENRKNFLEGRCLEWLRRHLENGRETLQRADPPKTSVTRRPISEHEVTLKCWALGFYPA 241
Query: 833 EISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLT 1012
EI+LTWQR+G+DQ+QD ELVETRP GDGTFQKWAA+VVP GEEQ YTCH+ H+ L +P+T
Sbjct: 242 EITLTWQRDGEDQTQDTELVETRPGGDGTFQKWAAVVVPSGEEQRYTCHILHKSLTKPIT 301
Query: 1013 LRWE-PPQPPVP 1045
LRWE PPQ +P
Sbjct: 302 LRWEPPPQSTIP 313
Score = 38.9 bits (89), Expect(2) = 1e-77
Identities = 23/45 (51%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Frame = +1
Query: 1114 WEKKRSGEKGGSYTQAA---GRDSTQSSGVSLIKDPRV*DSCLVG 1239
W KK SG KGGSY+QA G S Q S +S++ P SCLVG
Sbjct: 337 WRKKHSGRKGGSYSQAENKYGGSSAQDSQMSVMA-PNEQASCLVG 380
>ref|XP_536867.2| PREDICTED: similar to Zinc-alpha-2-glycoprotein precursor
(Zn-alpha-2-glycoprotein) (Zn-alpha-2-GP) [Canis
familiaris].
Length = 315
Score = 191 bits (485), Expect = 1e-48
Identities = 102/298 (34%), Positives = 157/298 (52%), Gaps = 3/298 (1%)
Frame = +2
Query: 158 QETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEEMKAKSCVQWLREEP- 334
QET+ +SL +FY +S + G P+F A ++DQ F YD+E KA W + E
Sbjct: 21 QETQGGPYSLSFFYTGLSRPSDGFPSFQATAYLNDQDFFHYDSETGKAIPRYPWSQMEGI 80
Query: 335 SYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPHTLQFNYGCELQQ 514
+ E+K+ +R IF + L+++ YY + G HT Q +GCELQ
Sbjct: 81 EDWEKESKLQKAREDIFMVTLKDIMEYYKD-------------KEGSHTFQGMFGCELQN 127
Query: 515 DGRTSGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNFIERDKNYLEKECI 694
+ + W+Y YDG +++ + + + A TK+KWEA+ +++R K YLE+EC
Sbjct: 128 NKNSGAFWRYAYDGRNFIEFNKEIPAWVPQDPAALNTKKKWEAEEVYVQRAKAYLEEECP 187
Query: 695 VWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQS 874
V L+RYLE+ L+R +PP +T H + + TL+CW GFYP+EI L W + D
Sbjct: 188 VMLQRYLEYGKTYLDRQEPPSVSITSHGTPEGIQTLKCWVSGFYPQEIDLHW-IQADDTQ 246
Query: 875 QDMELVETRPSGDGTFQKWAALVVPPGE--EQSYTCHVQHEGLQEPLTLRWEPPQPPV 1042
+ PSG+ T+Q W + P + SY+C V+H L +PLT+ W+ Q V
Sbjct: 247 ETKSGGALLPSGNNTYQAWVVMSASPQDLASFSYSCLVKHSSLSQPLTVLWDKRQGAV 304
>ref|XP_533618.2| PREDICTED: similar to IgG receptor FcRn large subunit p51 precursor
(FcRn) (Neonatal Fc receptor) (IgG Fc fragment receptor
transporter, alpha chain) [Canis familiaris].
Length = 354
Score = 115 bits (287), Expect = 1e-25
Identities = 83/295 (28%), Positives = 130/295 (44%), Gaps = 3/295 (1%)
Frame = +2
Query: 155 LQETRARTH-SLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEEMKAKSCVQWLREE 331
L RA +H SL Y A+S PG PAF A G + Q ++ Y+N +A+ W+ E
Sbjct: 18 LPTLRADSHLSLLYHLTAVSAPPPGTPAFWASGWLGPQQYLSYNNLRAQAEPYGAWVWEN 77
Query: 332 PS--YFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPHTLQFNYGCE 505
Y+ ET ++ +F L+ + +G GP+TLQ GCE
Sbjct: 78 QVSWYWEKETTDLRTKEGLFLEALK--------ALGDG----------GPYTLQGLLGCE 119
Query: 506 LQQDGRTSGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNFIERDKNYLEK 685
L D + ++ +G D+++ + + ++W + +++ +L
Sbjct: 120 LGPDNTSVPVAKFALNGEDFMTFDPKLGTWNGDWPETETVSKRWMQQAGAVSKERTFLLY 179
Query: 686 ECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQ 865
C L +LE +L +PP + P S L C A FYP E+ L + R G
Sbjct: 180 SCPQRLLGHLERGRGNLEWKEPPSMRLKARPGSPGFSVLTCSAFSFYPPELQLRFLRNGL 239
Query: 866 DQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWEPP 1030
+ P+GDG+F W++L V G+E Y C VQH GL +PLT+ E P
Sbjct: 240 AAGSGEG--DFGPNGDGSFHAWSSLTVKSGDEHHYRCLVQHAGLPQPLTVELESP 292
>ref|XP_849737.1| PREDICTED: similar to HLA class II histocompatibility antigen, DM
beta chain precursor (MHC class II antigen DMB) [Canis
familiaris].
Length = 263
Score = 74.7 bits (182), Expect = 2e-13
Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 3/156 (1%)
Frame = +2
Query: 584 PLQYTAATFIAQYTKQKWEADRNFIERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTH 763
P ++ +A Y +R N L+ +C + F G +RT PP
Sbjct: 63 PYEFGTLNVLANYLSDYLNQQEYLHQRLSNGLQ-DCATHTQ---SFWGSLTHRTRPPTVQ 118
Query: 764 VTRHP--SSDLGVTLRCWALGFYPKEISLTWQREGQD-QSQDMELVETRPSGDGTFQKWA 934
V + ++ V L C+ GFYP +++++W++ GQ S L +P+GD T+Q +
Sbjct: 119 VAKSTPFNTKESVMLACYVWGFYPADVTISWRKNGQPVPSHSSALNMAQPNGDWTYQTVS 178
Query: 935 ALVVPPGEEQSYTCHVQHEGLQEPLTLRWEPPQPPV 1042
L P E +YTC V+H G EP+ W P P+
Sbjct: 179 HLATTPSYEDTYTCVVEHIGAPEPVCEDWTPGLSPM 214
>ref|NP_001014403.1| major histocompatibility complex, class II, DQ beta 1 [Canis lupus
familiaris].
Length = 269
Score = 69.7 bits (169), Expect = 7e-12
Identities = 51/170 (30%), Positives = 75/170 (44%), Gaps = 9/170 (5%)
Frame = +2
Query: 539 QYGYDGADYLSLHLDPLQYTAATFIAQ-----YTKQKWEADRNFIERDK----NYLEKEC 691
+Y Y+ +++ D ++ A T + + + +QK E DR E D NY +E
Sbjct: 61 KYIYNREEFVRFDSDVGEFRAVTELGRPDAEYWNRQKDEMDRVRAELDTVCRHNYGREEL 120
Query: 692 IVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQ 871
RR E P KT V H + L C FYP +I + W R Q+Q
Sbjct: 121 TTLQRRV-----EPTVTIFPSKTEVLNHHN-----LLVCSVTDFYPGQIKVRWFRNDQEQ 170
Query: 872 SQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRW 1021
+ + +GD TFQ L + P YTCHV+H LQ P+T++W
Sbjct: 171 TAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHASLQSPITVQW 220
>ref|XP_850803.1| PREDICTED: similar to HLA class II histocompatibility antigen, DO
alpha chain precursor (MHC class II antigen DOA) (MHC DZ
alpha) (MHC DN-alpha) isoform 11 [Canis familiaris].
Length = 227
Score = 67.8 bits (164), Expect = 2e-11
Identities = 56/192 (29%), Positives = 80/192 (41%), Gaps = 7/192 (3%)
Frame = +2
Query: 491 NYGCELQQDGRTSGHWQYGYDGADYLSLHLDPLQ--YTAATF--IAQYTKQKWEADRNFI 658
+YG Q +SG + + +DG S+ L Q + F +A + Q A I
Sbjct: 3 SYGPAFYQSYGSSGQFAHEFDGEQLFSVELKKRQAVWRLPEFGNLAHFDPQNGLASIAVI 62
Query: 659 ERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGV--TLRCWALGFYPK 832
+ + L + R G L+ PP+ V +LG L C +P
Sbjct: 63 KAHLDVLVERS----NRTRAINGTHLSSPLPPRVAVLPKFRVELGQPNVLICIVDNIFPP 118
Query: 833 EISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLT 1012
I++TW R GQ S+ + D F+K+ L P E Y C V+H GL+EPL
Sbjct: 119 VINITWLRNGQIISEGVAQTSFYSQPDHLFRKFCYLTFVPSAEDMYDCKVEHWGLEEPLL 178
Query: 1013 LRWEPPQP-PVP 1045
WEP P PVP
Sbjct: 179 RHWEPQVPIPVP 190
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 61,571,131
Number of extensions: 1783383
Number of successful extensions: 8333
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 8258
Number of HSP's successfully gapped: 29
Length of query: 478
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 371
Effective length of database: 15,307,552
Effective search space: 5679101792
Effective search space used: 5679101792
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001767
(1436 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005505.2| major histocompatibility complex, class I, B pr... 318 6e-91
Alignment gi|NP_002107.3| HLA class I histocompatibility antigen, A-1 alp... 308 2e-89
Alignment gi|NP_001229687.1| HLA class I histocompatibility antigen, A-1 ... 305 1e-88
Alignment gi|NP_001229971.1| HLA class I histocompatibility antigen, Cw-1... 305 4e-85
Alignment gi|NP_005507.3| HLA class I histocompatibility antigen, alpha c... 298 2e-84
Alignment gi|NP_002108.4| HLA class I histocompatibility antigen, Cw-1 al... 301 5e-84
Alignment gi|NP_002118.1| HLA class I histocompatibility antigen, alpha c... 300 3e-81
Alignment gi|NP_001091949.1| HLA class I histocompatibility antigen, alph... 290 6e-79
Alignment gi|NP_061823.2| HLA class I histocompatibility antigen, alpha c... 290 6e-79
Alignment gi|NP_001522.1| major histocompatibility complex class I-relate... 214 1e-55
>ref|NP_005505.2| major histocompatibility complex, class I, B precursor [Homo
sapiens].
Length = 362
Score = 318 bits (815), Expect(2) = 6e-91
Identities = 163/311 (52%), Positives = 210/311 (67%), Gaps = 5/311 (1%)
Frame = +2
Query: 128 VLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEEMKAKS 307
+LL S +L ET A +HS++YFY ++S G P F + G +DD F+R+D++ +
Sbjct: 10 LLLLSAALALTETWAGSHSMRYFYTSVSRPGRGEPRFISVGYVDDTQFVRFDSDAASPRE 69
Query: 308 --CVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPH 478
W+ +E P Y++ T+I+ ++ + R +LRN++ YYNQ+ + G H
Sbjct: 70 EPRAPWIEQEGPEYWDRNTQIYKAQAQTDRESLRNLRGYYNQS------------EAGSH 117
Query: 479 TLQFNYGCELQQDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNF 655
TLQ YGC++ DGR GH QY YDG DY++L+ D +TAA AQ T++KWEA R
Sbjct: 118 TLQSMYGCDVGPDGRLLRGHDQYAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAARE- 176
Query: 656 IERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKE 835
E+ + YLE EC+ WLRRYLE + L R DPPKTHVT HP SD TLRCWALGFYP E
Sbjct: 177 AEQRRAYLEGECVEWLRRYLENGKDKLERADPPKTHVTHHPISDHEATLRCWALGFYPAE 236
Query: 836 ISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTL 1015
I+LTWQR+G+DQ+QD ELVETRP+GD TFQKWAA+VVP GEEQ YTCHVQHEGL +PLTL
Sbjct: 237 ITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTL 296
Query: 1016 RWEP-PQPPVP 1045
RWEP Q VP
Sbjct: 297 RWEPSSQSTVP 307
Score = 36.2 bits (82), Expect(2) = 6e-91
Identities = 18/27 (66%), Positives = 20/27 (74%)
Frame = +1
Query: 1120 KKRSGEKGGSYTQAAGRDSTQSSGVSL 1200
+K SG KGGSY+QAA DS Q S VSL
Sbjct: 334 RKSSGGKGGSYSQAACSDSAQGSDVSL 360
>ref|NP_002107.3| HLA class I histocompatibility antigen, A-1 alpha chain precursor
[Homo sapiens].
Length = 365
Score = 308 bits (789), Expect(2) = 2e-89
Identities = 156/311 (50%), Positives = 209/311 (67%), Gaps = 5/311 (1%)
Frame = +2
Query: 128 VLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNE--EMKA 301
+LL S +L +T A +HS++YF+ ++S G P F A G +DD F+R+D++ +
Sbjct: 10 LLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRM 69
Query: 302 KSCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPH 478
+ W+ +E P Y++ ET+ ++ + R++L ++ YYNQ+ + G H
Sbjct: 70 EPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQS------------EAGSH 117
Query: 479 TLQFNYGCELQQDGR-TSGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNF 655
T+Q YGC++ DGR G+ Q YDG DY++L+ D +TAA AQ TK+KWEA
Sbjct: 118 TIQIMYGCDVGSDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHE- 176
Query: 656 IERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKE 835
E+ + YL+ C+ WLRRYLE E+L RTDPPKTH+T HP SD TLRCWALGFYP E
Sbjct: 177 AEQLRAYLDGTCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAE 236
Query: 836 ISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTL 1015
I+LTWQR+G+DQ+QD ELVETRP+GDGTFQKWAA+VVP GEEQ YTCHVQHEGL +PLTL
Sbjct: 237 ITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTL 296
Query: 1016 RWE-PPQPPVP 1045
RWE QP +P
Sbjct: 297 RWELSSQPTIP 307
Score = 41.2 bits (95), Expect(2) = 2e-89
Identities = 19/29 (65%), Positives = 20/29 (68%)
Frame = +1
Query: 1114 WEKKRSGEKGGSYTQAAGRDSTQSSGVSL 1200
W +K S KGGSYTQAA DS Q S VSL
Sbjct: 332 WRRKSSDRKGGSYTQAASSDSAQGSDVSL 360
>ref|NP_001229687.1| HLA class I histocompatibility antigen, A-1 alpha chain precursor
[Homo sapiens].
Length = 365
Score = 305 bits (782), Expect(2) = 1e-88
Identities = 158/311 (50%), Positives = 207/311 (66%), Gaps = 5/311 (1%)
Frame = +2
Query: 128 VLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNE--EMKA 301
+LL S +L +T A +HS++YF+ ++S G P F A G +DD F+R+D++ K
Sbjct: 10 LLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQKM 69
Query: 302 KSCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPH 478
+ W+ +E P Y++ ET+ + + R NL ++ YYNQ+ + G H
Sbjct: 70 EPRAPWIEQEGPEYWDQETRNMKAHSQTDRANLGTLRGYYNQS------------EDGSH 117
Query: 479 TLQFNYGCELQQDGR-TSGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNF 655
T+Q YGC++ DGR G+ Q YDG DY++L+ D +TAA AQ TK+KWEA +
Sbjct: 118 TIQIMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAV-HA 176
Query: 656 IERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKE 835
E+ + YLE C+ LRRYLE E+L RTDPPKTH+T HP SD TLRCWALGFYP E
Sbjct: 177 AEQRRVYLEGRCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAE 236
Query: 836 ISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTL 1015
I+LTWQR+G+DQ+QD ELVETRP+GDGTFQKWAA+VVP GEEQ YTCHVQHEGL +PLTL
Sbjct: 237 ITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTL 296
Query: 1016 RWE-PPQPPVP 1045
RWE QP +P
Sbjct: 297 RWELSSQPTIP 307
Score = 41.2 bits (95), Expect(2) = 1e-88
Identities = 19/29 (65%), Positives = 20/29 (68%)
Frame = +1
Query: 1114 WEKKRSGEKGGSYTQAAGRDSTQSSGVSL 1200
W +K S KGGSYTQAA DS Q S VSL
Sbjct: 332 WRRKSSDRKGGSYTQAASSDSAQGSDVSL 360
>ref|NP_001229971.1| HLA class I histocompatibility antigen, Cw-1 alpha chain precursor
[Homo sapiens].
Length = 366
Score = 305 bits (780), Expect(2) = 4e-85
Identities = 161/313 (51%), Positives = 211/313 (67%), Gaps = 5/313 (1%)
Frame = +2
Query: 122 APVLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEEM-- 295
A +LL S +L ET A +HS++YF A+S G P F + G +DD F+R+D++
Sbjct: 8 ALLLLLSGGLALTETWACSHSMRYFDTAVSRPGRGEPRFISVGYVDDTQFVRFDSDAASP 67
Query: 296 KAKSCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTG 472
+ + W+ +E P Y++ ET+ + + + R++LRN++ YYNQ+ + G
Sbjct: 68 RGEPRAPWVEQEGPEYWDRETQNYKRQAQADRVSLRNLRGYYNQS------------EDG 115
Query: 473 PHTLQFNYGCELQQDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADR 649
HTLQ YGC+L DGR G+ Q YDG DY++L+ D +TAA AQ T++K EA R
Sbjct: 116 SHTLQRMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKLEAAR 175
Query: 650 NFIERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYP 829
E+ + YLE C+ WLRRYLE E+L R +PPKTHVT HP SD TLRCWALGFYP
Sbjct: 176 A-AEQLRAYLEGTCVEWLRRYLENGKETLQRAEPPKTHVTHHPLSDHEATLRCWALGFYP 234
Query: 830 KEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPL 1009
EI+LTWQR+G+DQ+QD ELVETRP+GDGTFQKWAA+VVP G+EQ YTCH+QHEGLQEPL
Sbjct: 235 AEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHMQHEGLQEPL 294
Query: 1010 TLRWEP-PQPPVP 1045
TL WEP QP +P
Sbjct: 295 TLSWEPSSQPTIP 307
Score = 30.0 bits (66), Expect(2) = 4e-85
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = +1
Query: 1120 KKRSGEKGGSYTQAAGRDSTQSSGVSLI 1203
+K SG KGGS +QAA +S Q S SLI
Sbjct: 335 RKSSGGKGGSCSQAACSNSAQGSDESLI 362
>ref|NP_005507.3| HLA class I histocompatibility antigen, alpha chain E precursor [Homo
sapiens].
Length = 358
Score = 298 bits (764), Expect(2) = 2e-84
Identities = 154/311 (49%), Positives = 205/311 (65%), Gaps = 5/311 (1%)
Frame = +2
Query: 128 VLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEEMKAKS 307
+LL S +L +T A +HSL+YF+ ++S G P F + G +DD F+R+DN+ +
Sbjct: 7 LLLLSEALALTQTWAGSHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDNDAASPRM 66
Query: 308 CVQ--WLREEPS-YFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPH 478
+ W+ +E S Y++ ET+ +IFR+NLR ++ YYNQ+ + G H
Sbjct: 67 VPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTLRGYYNQS------------EAGSH 114
Query: 479 TLQFNYGCELQQDGR-TSGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNF 655
TLQ+ +GCEL DGR G+ Q+ YDG DYL+L+ D +TA AQ ++QK D +
Sbjct: 115 TLQWMHGCELGPDGRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQK-SNDASE 173
Query: 656 IERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKE 835
E + YLE C+ WL +YLE E+L +PPKTHVT HP SD TLRCWALGFYP E
Sbjct: 174 AEHQRAYLEDTCVEWLHKYLEKGKETLLHLEPPKTHVTHHPISDHEATLRCWALGFYPAE 233
Query: 836 ISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTL 1015
I+LTWQ++G+ +QD ELVETRP+GDGTFQKWAA+VVP GEEQ YTCHVQHEGL EP+TL
Sbjct: 234 ITLTWQQDGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPVTL 293
Query: 1016 RWEP-PQPPVP 1045
RW+P QP +P
Sbjct: 294 RWKPASQPTIP 304
Score = 34.3 bits (77), Expect(2) = 2e-84
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +1
Query: 1114 WEKKRSGEKGGSYTQAAGRDSTQSS 1188
W KK SG KGGSY++A DS Q S
Sbjct: 329 WRKKSSGGKGGSYSKAEWSDSAQGS 353
>ref|NP_002108.4| HLA class I histocompatibility antigen, Cw-1 alpha chain precursor
[Homo sapiens].
Length = 366
Score = 301 bits (771), Expect(2) = 5e-84
Identities = 160/313 (51%), Positives = 210/313 (67%), Gaps = 5/313 (1%)
Frame = +2
Query: 122 APVLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEEM-- 295
A +LL S +L ET A +HS++YF A+S G P F + G +DD F+R+D++
Sbjct: 8 ALLLLLSGGLALTETWACSHSMRYFDTAVSRPGRGEPRFISVGYVDDTQFVRFDSDAASP 67
Query: 296 KAKSCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTG 472
+ + W+ +E P Y++ ET+ + + + R++LRN++ YYNQ+ + G
Sbjct: 68 RGEPRAPWVEQEGPEYWDRETQKYKRQAQADRVSLRNLRGYYNQS------------EDG 115
Query: 473 PHTLQFNYGCELQQDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADR 649
HTLQ GC+L DGR G+ Q YDG DY++L+ D +TAA AQ T++K EA R
Sbjct: 116 SHTLQRMSGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKLEAAR 175
Query: 650 NFIERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYP 829
E+ + YLE C+ WLRRYLE E+L R +PPKTHVT HP SD TLRCWALGFYP
Sbjct: 176 A-AEQLRAYLEGTCVEWLRRYLENGKETLQRAEPPKTHVTHHPLSDHEATLRCWALGFYP 234
Query: 830 KEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPL 1009
EI+LTWQR+G+DQ+QD ELVETRP+GDGTFQKWAA+VVP G+EQ YTCH+QHEGLQEPL
Sbjct: 235 AEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHMQHEGLQEPL 294
Query: 1010 TLRWEP-PQPPVP 1045
TL WEP QP +P
Sbjct: 295 TLSWEPSSQPTIP 307
Score = 30.0 bits (66), Expect(2) = 5e-84
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = +1
Query: 1120 KKRSGEKGGSYTQAAGRDSTQSSGVSLI 1203
+K SG KGGS +QAA +S Q S SLI
Sbjct: 335 RKSSGGKGGSCSQAACSNSAQGSDESLI 362
>ref|NP_002118.1| HLA class I histocompatibility antigen, alpha chain G precursor [Homo
sapiens].
Length = 338
Score = 300 bits (767), Expect = 3e-81
Identities = 156/307 (50%), Positives = 199/307 (64%), Gaps = 4/307 (1%)
Frame = +2
Query: 131 LLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEEM--KAK 304
LL S +L ET A +HS++YF A+S G P F A G +DD F+R+D++ + +
Sbjct: 11 LLLSGALTLTETWAGSHSMRYFSAAVSRPGRGEPRFIAMGYVDDTQFVRFDSDSACPRME 70
Query: 305 SCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPHT 481
W+ +E P Y+ +ET+ + + R+NL+ ++ YYNQ+ + HT
Sbjct: 71 PRAPWVEQEGPEYWEEETRNTKAHAQTDRMNLQTLRGYYNQS------------EASSHT 118
Query: 482 LQFNYGCELQQDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNFI 658
LQ+ GC+L DGR G+ QY YDG DYL+L+ D +TAA AQ +K+K EA N
Sbjct: 119 LQWMIGCDLGSDGRLLRGYEQYAYDGKDYLALNEDLRSWTAADTAAQISKRKCEA-ANVA 177
Query: 659 ERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKEI 838
E+ + YLE C+ WL RYLE E L R DPPKTHVT HP D TLRCWALGFYP EI
Sbjct: 178 EQRRAYLEGTCVEWLHRYLENGKEMLQRADPPKTHVTHHPVFDYEATLRCWALGFYPAEI 237
Query: 839 SLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLR 1018
LTWQR+G+DQ+QD+ELVETRP+GDGTFQKWAA+VVP GEEQ YTCHVQHEGL EPL LR
Sbjct: 238 ILTWQRDGEDQTQDVELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLMLR 297
Query: 1019 WEPPQPP 1039
W+ P
Sbjct: 298 WKQSSLP 304
>ref|NP_001091949.1| HLA class I histocompatibility antigen, alpha chain F isoform 1
precursor [Homo sapiens].
Length = 442
Score = 290 bits (741), Expect(2) = 6e-79
Identities = 154/311 (49%), Positives = 202/311 (64%), Gaps = 5/311 (1%)
Frame = +2
Query: 128 VLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEEM--KA 301
+LL S +L +T A +HSL+YF A+S G P + A +DD F+R+D++ +
Sbjct: 7 LLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIPRM 66
Query: 302 KSCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPH 478
+ W+ +E P Y+ T + + R+ LRN+ R YNQ+ + G H
Sbjct: 67 EPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQS------------EAGSH 114
Query: 479 TLQFNYGCELQQDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNF 655
TLQ GC++ DGR G+ Q+ YDG DY+SL+ D +TAA +AQ T++ +EA+ +
Sbjct: 115 TLQGMNGCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEE-Y 173
Query: 656 IERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKE 835
E + YLE EC+ LRRYLE E+L R DPPK HV HP SD TLRCWALGFYP E
Sbjct: 174 AEEFRTYLEGECLELLRRYLENGKETLQRADPPKAHVAHHPISDHEATLRCWALGFYPAE 233
Query: 836 ISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTL 1015
I+LTWQR+G++Q+QD ELVETRP+GDGTFQKWAA+VVPPGEEQ YTCHVQHEGL +PL L
Sbjct: 234 ITLTWQRDGEEQTQDTELVETRPAGDGTFQKWAAVVVPPGEEQRYTCHVQHEGLPQPLIL 293
Query: 1016 RWE-PPQPPVP 1045
RWE PQP +P
Sbjct: 294 RWEQSPQPTIP 304
Score = 24.6 bits (52), Expect(2) = 6e-79
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 1114 WEKKRSGEKGGSYTQAA 1164
W KK S GSY+QAA
Sbjct: 329 WRKKSSDRNRGSYSQAA 345
>ref|NP_061823.2| HLA class I histocompatibility antigen, alpha chain F isoform 2
precursor [Homo sapiens].
Length = 346
Score = 290 bits (741), Expect(2) = 6e-79
Identities = 154/311 (49%), Positives = 202/311 (64%), Gaps = 5/311 (1%)
Frame = +2
Query: 128 VLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEEM--KA 301
+LL S +L +T A +HSL+YF A+S G P + A +DD F+R+D++ +
Sbjct: 7 LLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIPRM 66
Query: 302 KSCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPH 478
+ W+ +E P Y+ T + + R+ LRN+ R YNQ+ + G H
Sbjct: 67 EPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQS------------EAGSH 114
Query: 479 TLQFNYGCELQQDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNF 655
TLQ GC++ DGR G+ Q+ YDG DY+SL+ D +TAA +AQ T++ +EA+ +
Sbjct: 115 TLQGMNGCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEE-Y 173
Query: 656 IERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKE 835
E + YLE EC+ LRRYLE E+L R DPPK HV HP SD TLRCWALGFYP E
Sbjct: 174 AEEFRTYLEGECLELLRRYLENGKETLQRADPPKAHVAHHPISDHEATLRCWALGFYPAE 233
Query: 836 ISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTL 1015
I+LTWQR+G++Q+QD ELVETRP+GDGTFQKWAA+VVPPGEEQ YTCHVQHEGL +PL L
Sbjct: 234 ITLTWQRDGEEQTQDTELVETRPAGDGTFQKWAAVVVPPGEEQRYTCHVQHEGLPQPLIL 293
Query: 1016 RWE-PPQPPVP 1045
RWE PQP +P
Sbjct: 294 RWEQSPQPTIP 304
Score = 24.6 bits (52), Expect(2) = 6e-79
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 1114 WEKKRSGEKGGSYTQAA 1164
W KK S GSY+QAA
Sbjct: 329 WRKKSSDRNRGSYSQAA 345
>ref|NP_001522.1| major histocompatibility complex class I-related gene protein isoform
1 precursor [Homo sapiens].
Length = 341
Score = 214 bits (546), Expect = 1e-55
Identities = 107/298 (35%), Positives = 168/298 (56%), Gaps = 2/298 (0%)
Frame = +2
Query: 155 LQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEEMKAKSCVQWLREE- 331
++ + +RTHSL+YF L +S+ GVP F + G +D P YD+ + + W+ E
Sbjct: 17 VKHSDSRTHSLRYFRLGVSDPIHGVPEFISVGYVDSHPITTYDSVTRQKEPRAPWMAENL 76
Query: 332 -PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPHTLQFNYGCEL 508
P ++ T++ ++F++ L+ +QR+YN + G HT Q GCEL
Sbjct: 77 APDHWERYTQLLRGWQQMFKVELKRLQRHYNHS--------------GSHTYQRMIGCEL 122
Query: 509 QQDGRTSGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNFIERDKNYLEKE 688
+DG T+G QY YDG D+L + D L + A +A KQ WEA+++ + KN+LE+E
Sbjct: 123 LEDGSTTGFLQYAYDGQDFLIFNKDTLSWLAVDNVAHTIKQAWEANQHELLYQKNWLEEE 182
Query: 689 CIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQD 868
CI WL+R+LE+ ++L RT+PP V R + L C A GFYP EI +TW + G++
Sbjct: 183 CIAWLKRFLEYGKDTLQRTEPPLVRVNRKETFPGVTALFCKAHGFYPPEIYMTWMKNGEE 242
Query: 869 QSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWEPPQPPV 1042
Q+++ + PSGDGT+Q WA++ + P Y+CHV+H G+ L + E P+
Sbjct: 243 IVQEIDYGDILPSGDGTYQAWASIELDPQSSNLYSCHVEHCGVHMVLQVPQESETIPL 300
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 60,351,131
Number of extensions: 1747893
Number of successful extensions: 8095
Number of sequences better than 1.0e-05: 79
Number of HSP's gapped: 7955
Number of HSP's successfully gapped: 88
Length of query: 478
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 372
Effective length of database: 14,802,980
Effective search space: 5506708560
Effective search space used: 5506708560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001767
(1436 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032233.2| histocompatibility 2, T region locus 24 [Mus mu... 390 e-108
Alignment gi|XP_001474348.1| PREDICTED: HLA class I histocompatibility an... 388 e-108
Alignment gi|XP_003086969.1| PREDICTED: h-2 class I histocompatibility an... 300 1e-81
Alignment gi|NP_001188389.1| H-2 class I histocompatibility antigen, Q9 a... 300 2e-81
Alignment gi|NP_034524.3| H-2 class I histocompatibility antigen, Q7 alph... 299 4e-81
Alignment gi|XP_003085233.1| PREDICTED: h-2 class I histocompatibility an... 299 4e-81
Alignment gi|XP_003085228.1| PREDICTED: h-2 class I histocompatibility an... 299 4e-81
Alignment gi|XP_003086971.1| PREDICTED: h-2 class I histocompatibility an... 298 9e-81
Alignment gi|XP_003086970.1| PREDICTED: h-2 class I histocompatibility an... 298 9e-81
Alignment gi|NP_034522.2| histocompatibility 2, Q region locus 2 [Mus mus... 290 2e-80
>ref|NP_032233.2| histocompatibility 2, T region locus 24 [Mus musculus].
Length = 363
Score = 390 bits (1002), Expect = e-108
Identities = 183/309 (59%), Positives = 228/309 (73%)
Frame = +2
Query: 119 WAPVLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEEMK 298
WA L+ LS Q+ AR+HSL Y Y A++E PGVP+F A G +D+QPFI YD+ MK
Sbjct: 2 WA--LIFWLLSHPQDGGARSHSLHYCYSAVTEPGPGVPSFFASGFLDNQPFIHYDSRSMK 59
Query: 299 AKSCVQWLREEPSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPH 478
A+ C WLRE YF ET++FT+RMKIF+L+LRN+++YYN + +Q GPH
Sbjct: 60 AEPCADWLRENAQYFTHETEVFTNRMKIFQLSLRNIRQYYNSSGTQSQRADGFRQQAGPH 119
Query: 479 TLQFNYGCELQQDGRTSGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNFI 658
TLQF YGCE++ + RT+GHWQYGYDG+DYL+L L +QY AATFIA YTK+KWE + ++
Sbjct: 120 TLQFTYGCEMRYN-RTTGHWQYGYDGSDYLTLDLGSMQYIAATFIAGYTKRKWENNEYWL 178
Query: 659 ERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKEI 838
E++K YLEKECI+WL+RYL G++ RTDPPKT VT VTLRCWALGFYP +I
Sbjct: 179 EKEKTYLEKECILWLQRYLTMGGKNFTRTDPPKTTVTHQFKPKENVTLRCWALGFYPADI 238
Query: 839 SLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLR 1018
+LTWQ G++ +QD ELVETRPSGDGTFQKWAA+VVP GEEQ YTCHVQHE L +PL L+
Sbjct: 239 TLTWQLNGEELTQDTELVETRPSGDGTFQKWAAVVVPSGEEQRYTCHVQHEALTQPLVLK 298
Query: 1019 WEPPQPPVP 1045
WEP Q P
Sbjct: 299 WEPLQLTTP 307
>ref|XP_001474348.1| PREDICTED: HLA class I histocompatibility antigen, B-7 alpha
chain-like [Mus musculus].
Length = 486
Score = 388 bits (997), Expect = e-108
Identities = 182/309 (58%), Positives = 227/309 (73%)
Frame = +2
Query: 119 WAPVLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEEMK 298
WA L+ LS + AR+HSL Y Y A++E PGVP+F A G +D+QPFI YD+ MK
Sbjct: 2 WA--LIFWLLSHPHDGGARSHSLHYCYSAVTEPGPGVPSFFASGFLDNQPFIHYDSRSMK 59
Query: 299 AKSCVQWLREEPSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPH 478
A+ C WLRE YF ET++FT+RMKIF+L+LRN+++YYN + +Q GPH
Sbjct: 60 AEPCADWLRENAQYFTHETEVFTNRMKIFQLSLRNIRQYYNSSGTQSQRADGFRQQAGPH 119
Query: 479 TLQFNYGCELQQDGRTSGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNFI 658
TLQF YGCE++ + RT+GHWQYGYDG+DYL+L L +QY AATFIA YTK+KWE + ++
Sbjct: 120 TLQFTYGCEMRYN-RTTGHWQYGYDGSDYLTLDLGSMQYIAATFIAGYTKRKWENNEYWL 178
Query: 659 ERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKEI 838
E++K YLEKECI+WL+RYL G++ RTDPPKT VT VTLRCWALGFYP +I
Sbjct: 179 EKEKTYLEKECILWLQRYLTMGGKNFTRTDPPKTTVTHQFKPKENVTLRCWALGFYPADI 238
Query: 839 SLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLR 1018
+LTWQ G++ +QD ELVETRPSGDGTFQKWAA+VVP GEEQ YTCHVQHE L +PL L+
Sbjct: 239 TLTWQLNGEELTQDTELVETRPSGDGTFQKWAAVVVPSGEEQRYTCHVQHEALTQPLVLK 298
Query: 1019 WEPPQPPVP 1045
WEP Q P
Sbjct: 299 WEPLQLTTP 307
>ref|XP_003086969.1| PREDICTED: h-2 class I histocompatibility antigen, D-P alpha
chain-like isoform 1 [Mus musculus].
Length = 362
Score = 300 bits (769), Expect = 1e-81
Identities = 148/294 (50%), Positives = 197/294 (67%), Gaps = 4/294 (1%)
Frame = +2
Query: 161 ETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDN--EEMKAKSCVQWLREE- 331
+TRA +HSL+YF A+S G P + G +D+ F+R+D+ E + + +W+ +E
Sbjct: 21 QTRAGSHSLRYFVTAVSRPGFGEPRYMEVGYVDNTEFVRFDSDAENPRYEPRARWIEQEG 80
Query: 332 PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPHTLQFNYGCELQ 511
P Y+ ET+ + FR++LR RYYNQ+ G HTLQ+ GC+++
Sbjct: 81 PEYWERETRRAKGNEQSFRVDLRTALRYYNQSAG------------GSHTLQWMAGCDVE 128
Query: 512 QDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNFIERDKNYLEKE 688
DGR G+WQ+ YDG DY++L+ D +TAA AQ T++KWE ERD+ YLE E
Sbjct: 129 SDGRLLRGYWQFAYDGCDYIALNEDLKTWTAADMAAQITRRKWE-QAGAAERDRAYLEGE 187
Query: 689 CIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQD 868
C+ WLRRYL+ +L RTDPPK HVT H + VTLRCWALGFYP +I+LTWQ G++
Sbjct: 188 CVEWLRRYLKNGNATLLRTDPPKAHVTHHRRPEGDVTLRCWALGFYPADITLTWQLNGEE 247
Query: 869 QSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWEPP 1030
+Q+MELVETRP+GDGTFQKWA++VVP G+EQ YTCHV+HEGL EPLTLRWEPP
Sbjct: 248 LTQEMELVETRPAGDGTFQKWASVVVPLGKEQKYTCHVEHEGLPEPLTLRWEPP 301
>ref|NP_001188389.1| H-2 class I histocompatibility antigen, Q9 alpha chain [Mus
musculus].
Length = 334
Score = 300 bits (768), Expect = 2e-81
Identities = 155/308 (50%), Positives = 203/308 (65%), Gaps = 4/308 (1%)
Frame = +2
Query: 128 VLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDN--EEMKA 301
+LL + +L ETRA HSLQYF+ A+S G P F + G +DD F+R+D+ E +
Sbjct: 7 LLLVAAALTLIETRAGQHSLQYFHTAVSRPGLGEPWFISVGYVDDTQFVRFDSDAENPRM 66
Query: 302 KSCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPH 478
+ +W+ +E P Y+ ET+I + FR +LR Q YYNQ+ + G H
Sbjct: 67 EPRARWMEQEGPEYWERETQIAKGHEQSFRGSLRTAQSYYNQS------------KGGSH 114
Query: 479 TLQFNYGCELQQDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNF 655
TLQ+ YGC++ DGR G+ Q+ Y+G DY++L+ D +TA AQ T++KWE
Sbjct: 115 TLQWMYGCDMGSDGRLLRGYLQFAYEGRDYIALNEDLKTWTAVDMAAQITRRKWE-QAGI 173
Query: 656 IERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKE 835
E+D+ YLE C+ LRRYLE E+L RTDPPK HVT HP S VTLRCWALGFYP +
Sbjct: 174 AEKDQAYLEGTCMQSLRRYLELGKETLLRTDPPKAHVTHHPRSYGAVTLRCWALGFYPAD 233
Query: 836 ISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTL 1015
I+LTWQ G++ +QDMELVETRP+GDGTFQKWA++VVP G+EQ+YTCHV HEGL EPLTL
Sbjct: 234 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCHVNHEGLPEPLTL 293
Query: 1016 RWEPPQPP 1039
RW +PP
Sbjct: 294 RWGRWEPP 301
>ref|NP_034524.3| H-2 class I histocompatibility antigen, Q7 alpha chain isoform 1
precursor [Mus musculus].
Length = 334
Score = 299 bits (765), Expect = 4e-81
Identities = 154/308 (50%), Positives = 203/308 (65%), Gaps = 4/308 (1%)
Frame = +2
Query: 128 VLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDN--EEMKA 301
+LL + +L ETRA HSLQYF+ A+S G P F + G +DD F+R+D+ E +
Sbjct: 7 LLLVAAALTLIETRAGQHSLQYFHTAVSRPGLGEPWFISVGYVDDTQFVRFDSDAENPRM 66
Query: 302 KSCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPH 478
+ +W+ +E P Y+ ET+I + FR +LR Q YYNQ+ + G H
Sbjct: 67 EPRARWMEQEGPEYWERETQIAKGHEQSFRGSLRTAQSYYNQS------------KGGSH 114
Query: 479 TLQFNYGCELQQDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNF 655
TLQ+ YGC++ DGR G+ Q+ Y+G DY++L+ D +TA AQ T++KWE
Sbjct: 115 TLQWMYGCDMGSDGRLLRGYLQFAYEGRDYIALNEDLKTWTAVDMAAQITRRKWE-QAGI 173
Query: 656 IERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKE 835
E+D+ YLE C+ LRRYL+ E+L RTDPPK HVT HP S VTLRCWALGFYP +
Sbjct: 174 AEKDQAYLEGTCMQSLRRYLQLGKETLLRTDPPKAHVTHHPRSYGAVTLRCWALGFYPAD 233
Query: 836 ISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTL 1015
I+LTWQ G++ +QDMELVETRP+GDGTFQKWA++VVP G+EQ+YTCHV HEGL EPLTL
Sbjct: 234 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCHVNHEGLPEPLTL 293
Query: 1016 RWEPPQPP 1039
RW +PP
Sbjct: 294 RWGRWEPP 301
>ref|XP_003085233.1| PREDICTED: h-2 class I histocompatibility antigen, Q7 alpha
chain-like isoform 1 [Mus musculus].
Length = 334
Score = 299 bits (765), Expect = 4e-81
Identities = 154/308 (50%), Positives = 203/308 (65%), Gaps = 4/308 (1%)
Frame = +2
Query: 128 VLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDN--EEMKA 301
+LL + +L ETRA HSLQYF+ A+S G P F + G +DD F+R+D+ E +
Sbjct: 7 LLLVAAALTLIETRAGQHSLQYFHTAVSRPGLGEPWFISVGYVDDTQFVRFDSDAENPRM 66
Query: 302 KSCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPH 478
+ +W+ +E P Y+ ET+I + FR +LR Q YYNQ+ + G H
Sbjct: 67 EPRARWMEQEGPEYWERETQIAKGHEQSFRGSLRTAQSYYNQS------------KGGSH 114
Query: 479 TLQFNYGCELQQDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNF 655
TLQ+ YGC++ DGR G+ Q+ Y+G DY++L+ D +TA AQ T++KWE
Sbjct: 115 TLQWMYGCDMGSDGRLLRGYLQFAYEGRDYIALNEDLKTWTAVDMAAQITRRKWE-QAGI 173
Query: 656 IERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKE 835
E+D+ YLE C+ LRRYL+ E+L RTDPPK HVT HP S VTLRCWALGFYP +
Sbjct: 174 AEKDQAYLEGTCMQSLRRYLQLGKETLLRTDPPKAHVTHHPRSYGAVTLRCWALGFYPAD 233
Query: 836 ISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTL 1015
I+LTWQ G++ +QDMELVETRP+GDGTFQKWA++VVP G+EQ+YTCHV HEGL EPLTL
Sbjct: 234 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCHVNHEGLPEPLTL 293
Query: 1016 RWEPPQPP 1039
RW +PP
Sbjct: 294 RWGRWEPP 301
>ref|XP_003085228.1| PREDICTED: h-2 class I histocompatibility antigen, Q7 alpha
chain-like isoform 1 [Mus musculus].
Length = 330
Score = 299 bits (765), Expect = 4e-81
Identities = 154/308 (50%), Positives = 203/308 (65%), Gaps = 4/308 (1%)
Frame = +2
Query: 128 VLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDN--EEMKA 301
+LL + +L ETRA HSLQYF+ A+S G P F + G +DD F+R+D+ E +
Sbjct: 3 LLLVAAALTLIETRAGQHSLQYFHTAVSRPGLGEPWFISVGYVDDTQFVRFDSDAENPRM 62
Query: 302 KSCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPH 478
+ +W+ +E P Y+ ET+I + FR +LR Q YYNQ+ + G H
Sbjct: 63 EPRARWMEQEGPEYWERETQIAKGHEQSFRGSLRTAQSYYNQS------------KGGSH 110
Query: 479 TLQFNYGCELQQDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNF 655
TLQ+ YGC++ DGR G+ Q+ Y+G DY++L+ D +TA AQ T++KWE
Sbjct: 111 TLQWMYGCDMGSDGRLLRGYLQFAYEGRDYIALNEDLKTWTAVDMAAQITRRKWE-QAGI 169
Query: 656 IERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKE 835
E+D+ YLE C+ LRRYL+ E+L RTDPPK HVT HP S VTLRCWALGFYP +
Sbjct: 170 AEKDQAYLEGTCMQSLRRYLQLGKETLLRTDPPKAHVTHHPRSYGAVTLRCWALGFYPAD 229
Query: 836 ISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTL 1015
I+LTWQ G++ +QDMELVETRP+GDGTFQKWA++VVP G+EQ+YTCHV HEGL EPLTL
Sbjct: 230 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCHVNHEGLPEPLTL 289
Query: 1016 RWEPPQPP 1039
RW +PP
Sbjct: 290 RWGRWEPP 297
>ref|XP_003086971.1| PREDICTED: h-2 class I histocompatibility antigen, D-P alpha
chain-like isoform 3 [Mus musculus].
Length = 352
Score = 298 bits (762), Expect = 9e-81
Identities = 147/297 (49%), Positives = 197/297 (66%), Gaps = 4/297 (1%)
Frame = +2
Query: 161 ETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDN--EEMKAKSCVQWLREE- 331
+TRA +HSL+YF A+S G P + G +D+ F+R+D+ E + + +W+ +E
Sbjct: 21 QTRAGSHSLRYFVTAVSRPGFGEPRYMEVGYVDNTEFVRFDSDAENPRYEPRARWIEQEG 80
Query: 332 PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPHTLQFNYGCELQ 511
P Y+ ET+ + FR++LR RYYNQ+ G HTLQ+ GC+++
Sbjct: 81 PEYWERETRRAKGNEQSFRVDLRTALRYYNQSAG------------GSHTLQWMAGCDVE 128
Query: 512 QDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNFIERDKNYLEKE 688
DGR G+WQ+ YDG DY++L+ D +TAA AQ T++KWE ERD+ YLE E
Sbjct: 129 SDGRLLRGYWQFAYDGCDYIALNEDLKTWTAADMAAQITRRKWE-QAGAAERDRAYLEGE 187
Query: 689 CIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQD 868
C+ WLRRYL+ +L RTDPPK HVT H + VTLRCWALGFYP +I+LTWQ G++
Sbjct: 188 CVEWLRRYLKNGNATLLRTDPPKAHVTHHRRPEGDVTLRCWALGFYPADITLTWQLNGEE 247
Query: 869 QSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWEPPQPP 1039
+Q+MELVETRP+GDGTFQKWA++VVP G+EQ YTCHV+HEGL EPLTLRW +PP
Sbjct: 248 LTQEMELVETRPAGDGTFQKWASVVVPLGKEQKYTCHVEHEGLPEPLTLRWGKEEPP 304
>ref|XP_003086970.1| PREDICTED: h-2 class I histocompatibility antigen, D-P alpha
chain-like isoform 2 [Mus musculus].
Length = 365
Score = 298 bits (762), Expect = 9e-81
Identities = 147/297 (49%), Positives = 197/297 (66%), Gaps = 4/297 (1%)
Frame = +2
Query: 161 ETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDN--EEMKAKSCVQWLREE- 331
+TRA +HSL+YF A+S G P + G +D+ F+R+D+ E + + +W+ +E
Sbjct: 21 QTRAGSHSLRYFVTAVSRPGFGEPRYMEVGYVDNTEFVRFDSDAENPRYEPRARWIEQEG 80
Query: 332 PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPHTLQFNYGCELQ 511
P Y+ ET+ + FR++LR RYYNQ+ G HTLQ+ GC+++
Sbjct: 81 PEYWERETRRAKGNEQSFRVDLRTALRYYNQSAG------------GSHTLQWMAGCDVE 128
Query: 512 QDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNFIERDKNYLEKE 688
DGR G+WQ+ YDG DY++L+ D +TAA AQ T++KWE ERD+ YLE E
Sbjct: 129 SDGRLLRGYWQFAYDGCDYIALNEDLKTWTAADMAAQITRRKWE-QAGAAERDRAYLEGE 187
Query: 689 CIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQD 868
C+ WLRRYL+ +L RTDPPK HVT H + VTLRCWALGFYP +I+LTWQ G++
Sbjct: 188 CVEWLRRYLKNGNATLLRTDPPKAHVTHHRRPEGDVTLRCWALGFYPADITLTWQLNGEE 247
Query: 869 QSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWEPPQPP 1039
+Q+MELVETRP+GDGTFQKWA++VVP G+EQ YTCHV+HEGL EPLTLRW +PP
Sbjct: 248 LTQEMELVETRPAGDGTFQKWASVVVPLGKEQKYTCHVEHEGLPEPLTLRWGKEEPP 304
>ref|NP_034522.2| histocompatibility 2, Q region locus 2 [Mus musculus].
Length = 360
Score = 290 bits (743), Expect(2) = 2e-80
Identities = 150/296 (50%), Positives = 190/296 (64%), Gaps = 4/296 (1%)
Frame = +2
Query: 155 LQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDN--EEMKAKSCVQWLRE 328
L ETRA +HSL+YF A+S G P F G +DD F+R+D+ E + + W+ +
Sbjct: 16 LTETRAGSHSLRYFTTAVSRPGLGEPRFIIVGYVDDTQFVRFDSDAENPRMEPRAPWMEQ 75
Query: 329 E-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPHTLQFNYGCE 505
E P Y+ T++ + FR++L YYNQ+ + G HTLQ+ GC+
Sbjct: 76 EGPEYWERNTQVSKENEQSFRVSLGTALSYYNQS------------KGGSHTLQWLVGCD 123
Query: 506 LQQDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNFIERDKNYLE 682
L DG G+ Q YDG DYL+L+ D + +TAA A T+ K E E+ + YLE
Sbjct: 124 LGPDGSLLRGYEQSAYDGRDYLALNEDLITWTAADLAALKTRSKLE-QAGLAEKRRAYLE 182
Query: 683 KECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREG 862
+C+ WLRRYLE E+L TDPPK HVT HPSS VTLRCWALGFYP +I+LTWQ G
Sbjct: 183 VDCLTWLRRYLELGKETLLHTDPPKAHVTHHPSSQGDVTLRCWALGFYPADITLTWQLNG 242
Query: 863 QDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWEPP 1030
+D +QDMELVETRPSGDGTFQKWA+++VP GEE YTCHV+HEGL EPLTLRWEPP
Sbjct: 243 EDLTQDMELVETRPSGDGTFQKWASVMVPFGEEPRYTCHVEHEGLPEPLTLRWEPP 298
Score = 28.5 bits (62), Expect(2) = 2e-80
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 1123 KRSGEKGGSYTQAAGRDSTQSSGVSLIK 1206
+ +G K Y Q GRDS QSS +SL++
Sbjct: 332 RNTGGKVRDYAQDPGRDSPQSSDISLLE 359
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 50,864,913
Number of extensions: 1452496
Number of successful extensions: 6799
Number of sequences better than 1.0e-05: 130
Number of HSP's gapped: 6389
Number of HSP's successfully gapped: 141
Length of query: 478
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 373
Effective length of database: 12,463,779
Effective search space: 4648989567
Effective search space used: 4648989567
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001767
(1436 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001090896.1| MHC class I antigen 3 [Sus scrofa]. 344 e-107
Alignment gi|XP_003356639.1| PREDICTED: patr class I histocompatibility a... 344 e-107
Alignment gi|XP_003128290.1| PREDICTED: patr class I histocompatibility a... 334 e-104
Alignment gi|NP_001107174.1| MHC class I antigen 2 [Sus scrofa]. 331 e-104
Alignment gi|NP_001090900.1| MHC class I antigen 1 [Sus scrofa]. 333 e-103
Alignment gi|NP_001107528.1| MHC class I antigen 5 [Sus scrofa]. 332 e-101
Alignment gi|NP_001107175.1| MHC class I antigen 8 [Sus scrofa]. 326 1e-92
Alignment gi|NP_998933.1| MHC class I antigen 7 [Sus scrofa]. 320 1e-89
Alignment gi|NP_001107176.1| MHC class I antigen 6 [Sus scrofa]. 284 2e-77
Alignment gi|XP_003361021.1| PREDICTED: class I histocompatibility antige... 272 3e-73
>ref|NP_001090896.1| MHC class I antigen 3 [Sus scrofa].
Length = 361
Score = 344 bits (883), Expect(2) = e-107
Identities = 175/309 (56%), Positives = 217/309 (70%), Gaps = 4/309 (1%)
Frame = +2
Query: 131 LLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNE--EMKAK 304
LL S +L TR HSL+YF A+S G P F + G +DD F+R+D++ + +
Sbjct: 8 LLLSGTLALTGTREGPHSLRYFDTAVSRPDRGKPRFISVGYVDDTQFVRFDSDAPNPRME 67
Query: 305 SCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPHT 481
W+ +E Y+++ET+ + FR+NL N++ YYNQ+ + G HT
Sbjct: 68 PRAPWIEQEGQEYWDEETRNAMGSAQTFRVNLNNLRGYYNQS------------EAGSHT 115
Query: 482 LQFNYGCELQQDGR-TSGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNFI 658
LQ YGC++ D G+ Q YDGADY++L+ D +TAA AQ TK+KWEA +
Sbjct: 116 LQSMYGCDVGPDWLFLRGYSQDAYDGADYIALNEDLRSWTAADTAAQITKRKWEA-ADEA 174
Query: 659 ERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKEI 838
E+ ++YLE C+ WL++YL+ +L R +PPKTHVTRHPSSDLGVTLRCWALGFYPKEI
Sbjct: 175 EQMRSYLEGACVEWLQKYLQMGNNTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEI 234
Query: 839 SLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLR 1018
SLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLR
Sbjct: 235 SLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLR 294
Query: 1019 WEPPQPPVP 1045
W+PPQPPVP
Sbjct: 295 WDPPQPPVP 303
Score = 63.5 bits (153), Expect(2) = e-107
Identities = 34/61 (55%), Positives = 34/61 (55%)
Frame = +1
Query: 1036 PRPIVGIFXXXXXXXXXXXXXXXXXSWEKKRSGEKGGSYTQAAGRDSTQSSGVSLIKDPR 1215
P PIVGI W KKR GEKGGSYTQAAG DS Q S VSL KDPR
Sbjct: 301 PVPIVGIIVGLVLVLVAGAVVAGVVIWRKKRPGEKGGSYTQAAGSDSAQGSDVSLTKDPR 360
Query: 1216 V 1218
V
Sbjct: 361 V 361
>ref|XP_003356639.1| PREDICTED: patr class I histocompatibility antigen, A-126 alpha
chain-like [Sus scrofa].
Length = 361
Score = 344 bits (882), Expect(2) = e-107
Identities = 179/309 (57%), Positives = 217/309 (70%), Gaps = 4/309 (1%)
Frame = +2
Query: 131 LLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEEMKAKS- 307
LL S +L T+A HSL YFY A+S G F G +DD F+R+D++ AK
Sbjct: 8 LLLSGALALTGTQAGPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKME 67
Query: 308 -CVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPHT 481
QW+++E P Y++ ET+I + +R+ L+ ++ YYNQ+ + G HT
Sbjct: 68 PRAQWIKQEGPEYWDRETQISKETAQTYRVGLKTLRGYYNQS------------EAGSHT 115
Query: 482 LQFNYGCELQQDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNFI 658
LQ YGC L DG G+ Q YDGADYL+L+ D +TAA AQ TK+KWEA +
Sbjct: 116 LQRMYGCYLGPDGLLLRGYRQDAYDGADYLALNEDLRSWTAADTAAQITKRKWEA-ADEA 174
Query: 659 ERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKEI 838
E +++YL+ C+ LR+YLE ++L R +PPKTHVTRHPSSDLGVTLRCWALGFYPKEI
Sbjct: 175 EGERSYLQGLCVESLRKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEI 234
Query: 839 SLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLR 1018
SLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLR
Sbjct: 235 SLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLR 294
Query: 1019 WEPPQPPVP 1045
W+PPQ PVP
Sbjct: 295 WDPPQTPVP 303
Score = 62.4 bits (150), Expect(2) = e-107
Identities = 34/61 (55%), Positives = 34/61 (55%)
Frame = +1
Query: 1036 PRPIVGIFXXXXXXXXXXXXXXXXXSWEKKRSGEKGGSYTQAAGRDSTQSSGVSLIKDPR 1215
P PIVGI W KKRSGEKGGSYTQAAG DS Q S VSL K PR
Sbjct: 301 PVPIVGIIVGLVLVLVAGAVVAGVVIWRKKRSGEKGGSYTQAAGSDSDQGSDVSLTKGPR 360
Query: 1216 V 1218
V
Sbjct: 361 V 361
>ref|XP_003128290.1| PREDICTED: patr class I histocompatibility antigen, A-126 alpha
chain-like [Sus scrofa].
Length = 361
Score = 334 bits (857), Expect(2) = e-104
Identities = 174/309 (56%), Positives = 213/309 (68%), Gaps = 4/309 (1%)
Frame = +2
Query: 131 LLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDN--EEMKAK 304
LL S +L T+A HSL YFY A+S G F A G +DD F+R+DN + +
Sbjct: 8 LLLSGTLALTGTQAGPHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRME 67
Query: 305 SCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPHT 481
V W+++E Y+++ET+ + + + L ++ YYNQ+ + G HT
Sbjct: 68 PRVPWIQQEGQDYWDEETRKVKDNAQTYGVGLNTLRGYYNQS------------EAGSHT 115
Query: 482 LQFNYGCELQQDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNFI 658
LQ +GC L DG G+ Q YDGADY++L+ D +TAA AQ +K+KWEA +
Sbjct: 116 LQSMFGCYLGPDGLLLHGYRQDAYDGADYIALNEDLRSWTAADMAAQISKRKWEA-ADAA 174
Query: 659 ERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKEI 838
E ++YL+ C+ LRRYLE ++L R +PPKTHVTRHPSSDLGVTLRCWALGFYPKEI
Sbjct: 175 EHWRSYLQGLCVESLRRYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEI 234
Query: 839 SLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLR 1018
SLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLR
Sbjct: 235 SLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLR 294
Query: 1019 WEPPQPPVP 1045
W+P QPPVP
Sbjct: 295 WDPAQPPVP 303
Score = 62.8 bits (151), Expect(2) = e-104
Identities = 34/61 (55%), Positives = 34/61 (55%)
Frame = +1
Query: 1036 PRPIVGIFXXXXXXXXXXXXXXXXXSWEKKRSGEKGGSYTQAAGRDSTQSSGVSLIKDPR 1215
P PIVGI W K RSGEKGGSYTQAAG DS Q S VSL KDPR
Sbjct: 301 PVPIVGIIVGLVLVLVAGAVVAGVVIWRKTRSGEKGGSYTQAAGSDSDQGSDVSLTKDPR 360
Query: 1216 V 1218
V
Sbjct: 361 V 361
>ref|NP_001107174.1| MHC class I antigen 2 [Sus scrofa].
Length = 364
Score = 331 bits (849), Expect(2) = e-104
Identities = 170/312 (54%), Positives = 216/312 (69%), Gaps = 4/312 (1%)
Frame = +2
Query: 122 APVLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNE--EM 295
A ++L S +L T A HSL YFY A+S G F A G +DD F+R+D++
Sbjct: 8 AILILLSGALALTGTWAGPHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDSDAPNP 67
Query: 296 KAKSCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTG 472
+ + W+++E Y++ ET+ + R+NL+ ++ YYNQ+ + G
Sbjct: 68 RMEPRAPWIQQEGQDYWDRETRNVMGSAQTDRVNLKTLRGYYNQS------------EAG 115
Query: 473 PHTLQFNYGCELQQDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADR 649
HT+Q YGC++ DG G+ Q YDGADY++L+ D +TAA AQ TK+KWEA
Sbjct: 116 SHTIQVMYGCDVGPDGLLLRGYRQDAYDGADYIALNEDLRSWTAADTAAQITKRKWEA-A 174
Query: 650 NFIERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYP 829
+ E +++YL+ C+ L++YLE ++L R +PPKTHVTRHPSSDLGVTLRCWALGFYP
Sbjct: 175 DAAEGERSYLQGLCVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYP 234
Query: 830 KEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPL 1009
KEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEG QEP
Sbjct: 235 KEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGPQEPR 294
Query: 1010 TLRWEPPQPPVP 1045
TLRW+PPQPP+P
Sbjct: 295 TLRWDPPQPPIP 306
Score = 65.5 bits (158), Expect(2) = e-104
Identities = 35/61 (57%), Positives = 35/61 (57%)
Frame = +1
Query: 1036 PRPIVGIFXXXXXXXXXXXXXXXXXSWEKKRSGEKGGSYTQAAGRDSTQSSGVSLIKDPR 1215
P PIVGI W KKRSGEKGGSYTQAAG DS Q S VSL KDPR
Sbjct: 304 PIPIVGIIVGLVLVLVAGAMVTGVVIWRKKRSGEKGGSYTQAAGSDSAQGSDVSLTKDPR 363
Query: 1216 V 1218
V
Sbjct: 364 V 364
>ref|NP_001090900.1| MHC class I antigen 1 [Sus scrofa].
Length = 361
Score = 333 bits (855), Expect(2) = e-103
Identities = 174/309 (56%), Positives = 215/309 (69%), Gaps = 4/309 (1%)
Frame = +2
Query: 131 LLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEEM--KAK 304
LL S +L T+A HSL YFY A+S G F G +DD F+R+D++ + + +
Sbjct: 8 LLLSGTLALTGTQAGPHSLSYFYTAVSRPDLGDSRFIEVGYVDDTQFVRFDSDALNPRME 67
Query: 305 SCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPHT 481
W+ +E Y+++ET+ +I R++L+ ++ YYNQ+ + G HT
Sbjct: 68 PRAPWIEKEGQDYWDEETRKVKETAQINRVDLKTLRGYYNQS------------EAGSHT 115
Query: 482 LQFNYGCELQQDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNFI 658
LQ +GC L DG G+ Q YDGADY++L+ D +TAA AQ TK+KWEA +
Sbjct: 116 LQSMFGCYLGPDGLLLRGYRQDAYDGADYIALNEDLRSWTAADTAAQITKRKWEA-ADEA 174
Query: 659 ERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKEI 838
E+ ++YL+ C+ LR YLE ++L R DPPKTHVTRHPSSDLGVTLRCWALGFYPKEI
Sbjct: 175 EQWRSYLQGLCVESLREYLEMGKDTLQRADPPKTHVTRHPSSDLGVTLRCWALGFYPKEI 234
Query: 839 SLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLR 1018
SLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLR
Sbjct: 235 SLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLR 294
Query: 1019 WEPPQPPVP 1045
W+P QPPVP
Sbjct: 295 WDPAQPPVP 303
Score = 62.4 bits (150), Expect(2) = e-103
Identities = 34/61 (55%), Positives = 34/61 (55%)
Frame = +1
Query: 1036 PRPIVGIFXXXXXXXXXXXXXXXXXSWEKKRSGEKGGSYTQAAGRDSTQSSGVSLIKDPR 1215
P PIVGI W KKRSGEKGGSYTQAAG DS Q S VSL K PR
Sbjct: 301 PVPIVGIIVGLVLVLVAGAVVAGVVIWRKKRSGEKGGSYTQAAGSDSDQGSDVSLTKGPR 360
Query: 1216 V 1218
V
Sbjct: 361 V 361
>ref|NP_001107528.1| MHC class I antigen 5 [Sus scrofa].
Length = 361
Score = 332 bits (852), Expect(2) = e-101
Identities = 170/309 (55%), Positives = 213/309 (68%), Gaps = 4/309 (1%)
Frame = +2
Query: 131 LLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEEMKAKSC 310
LL S +L TRA HSL Y + ++S G P F A G +DD P +R+D++ K +
Sbjct: 8 LLLSGALALTGTRAGPHSLSYLFTSVSRPGRGEPRFIAVGCVDDTPLVRFDSDARKPRKE 67
Query: 311 VQ--WLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPHT 481
+ W+ +E P Y+++ET+I + R NL ++ YYNQ+ + HT
Sbjct: 68 PRAWWIEQEGPEYWDEETRISKDNAQTLRGNLNTLRGYYNQS------------EARSHT 115
Query: 482 LQFNYGCELQQDGRTSGHW-QYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNFI 658
+Q +GC++ D + Q YDGADYL+L+ D +TAA AQ TK+KWE N
Sbjct: 116 IQSLFGCDVGPDRLLLRRYRQDAYDGADYLALNEDLRSWTAADTAAQITKRKWET-ANVA 174
Query: 659 ERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKEI 838
E++++YL+ C+ L++YLE ++L R +PPKTHVTRHPSSDLGVTLRCWALGFYPKEI
Sbjct: 175 EQERSYLQGLCVEGLQKYLEMGEDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEI 234
Query: 839 SLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLR 1018
SLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLR
Sbjct: 235 SLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLR 294
Query: 1019 WEPPQPPVP 1045
W+P Q PVP
Sbjct: 295 WDPAQTPVP 303
Score = 56.6 bits (135), Expect(2) = e-101
Identities = 31/64 (48%), Positives = 33/64 (51%)
Frame = +1
Query: 1027 SSAPRPIVGIFXXXXXXXXXXXXXXXXXSWEKKRSGEKGGSYTQAAGRDSTQSSGVSLIK 1206
+ P P+VGI W KRSGEKGGSYTQAAG DS Q S V L
Sbjct: 298 AQTPVPMVGIIVGLVLVLVAGAMVAGVVIWRLKRSGEKGGSYTQAAGSDSAQGSDVFLPM 357
Query: 1207 DPRV 1218
DPRV
Sbjct: 358 DPRV 361
>ref|NP_001107175.1| MHC class I antigen 8 [Sus scrofa].
Length = 355
Score = 326 bits (835), Expect(2) = 1e-92
Identities = 166/304 (54%), Positives = 207/304 (68%), Gaps = 4/304 (1%)
Frame = +2
Query: 128 VLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEEM--KA 301
+LL L +L ET A +HS++YF+ +S G P + G +DD F+R+D+E +
Sbjct: 5 MLLLVLLGALTETWAGSHSMRYFHTVVSRPGYGEPRYLEVGYVDDTQFVRFDSEAQNPRM 64
Query: 302 KSCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPH 478
+ W+ +E Y+++ET+ ++ FR NL ++ YYNQ+ +TG H
Sbjct: 65 EPRAPWVEQEGQEYWDEETQRVKDLVQNFRRNLMILRGYYNQS------------ETGSH 112
Query: 479 TLQFNYGCELQQDGRTSG-HWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNF 655
T Q YGCE GR HWQY YDG DY++L+ D +TAA A+ T++KW+ R
Sbjct: 113 TFQLTYGCEEGSHGRPLHVHWQYAYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAH 172
Query: 656 IERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKE 835
ER K+YLE C+ WLRRYLE E L R DPPK +VT HPSSD VTLRCWALGFYPKE
Sbjct: 173 -ERFKSYLEGTCVEWLRRYLENGREMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKE 231
Query: 836 ISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTL 1015
ISLTW+REGQDQSQD+E+VETRPSGDGTFQKWAALVVPPGEEQSYTCHV+HEGLQEPLTL
Sbjct: 232 ISLTWRREGQDQSQDVEVVETRPSGDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTL 291
Query: 1016 RWEP 1027
RWEP
Sbjct: 292 RWEP 295
Score = 33.1 bits (74), Expect(2) = 1e-92
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +1
Query: 1114 WEKKRSGEKGGSYTQAAGRDSTQSSGVS 1197
W+K+ SG K GSY+QA +S ++S VS
Sbjct: 321 WKKRFSGRKRGSYSQAPSNNSVENSDVS 348
>ref|NP_998933.1| MHC class I antigen 7 [Sus scrofa].
Length = 401
Score = 320 bits (820), Expect(2) = 1e-89
Identities = 166/312 (53%), Positives = 211/312 (67%), Gaps = 4/312 (1%)
Frame = +2
Query: 122 APVLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNE--EM 295
A +LL S L + AR HSL+YFY A+S + P F+ G +DD F+R+D+
Sbjct: 5 ALLLLLSGTLVLTQPWARPHSLRYFYTAVSRPSRRDPRFSVVGYVDDTQFVRFDSNAPNP 64
Query: 296 KAKSCVQWLR-EEPSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTG 472
+ + W+ E P + T+I+ + F+++L ++ YYNQ+ + G
Sbjct: 65 REEPRTPWVELEGPECCDRNTRIYKDTSQNFQVSLNVLRGYYNQS------------EAG 112
Query: 473 PHTLQFNYGCELQQDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADR 649
HT Q+ GC + +DGR G+ Q+ YDGADY+ L+ D +TA AQ T++KWE +
Sbjct: 113 SHTYQWLCGCYVARDGRLLRGYSQFAYDGADYIVLNEDLRSWTAVGMAAQITRRKWE-EE 171
Query: 650 NFIERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYP 829
E+ + YLE C+ L RYL E+L R+DPPKTHVTRHPSSD VTLRCWALGFYP
Sbjct: 172 TVAEQSRAYLEVACVQSLHRYLANGKETLQRSDPPKTHVTRHPSSDNKVTLRCWALGFYP 231
Query: 830 KEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPL 1009
KEISLTWQ+EGQDQSQD+E+VETRPSGDGTF+KWAALVVPPGEEQSYTCHVQHEGLQEPL
Sbjct: 232 KEISLTWQQEGQDQSQDVEVVETRPSGDGTFRKWAALVVPPGEEQSYTCHVQHEGLQEPL 291
Query: 1010 TLRWEPPQPPVP 1045
TLRW+PPQPPVP
Sbjct: 292 TLRWDPPQPPVP 303
Score = 29.3 bits (64), Expect(2) = 1e-89
Identities = 18/53 (33%), Positives = 21/53 (39%)
Frame = +1
Query: 1036 PRPIVGIFXXXXXXXXXXXXXXXXXSWEKKRSGEKGGSYTQAAGRDSTQSSGV 1194
P PIVGI W KK SG K Y QA +++SGV
Sbjct: 301 PVPIVGIIVGLVLVLVTGAVVTGVVIWRKKCSGGKVRKYQQAERSSRSENSGV 353
>ref|NP_001107176.1| MHC class I antigen 6 [Sus scrofa].
Length = 369
Score = 284 bits (727), Expect(2) = 2e-77
Identities = 145/289 (50%), Positives = 191/289 (66%), Gaps = 4/289 (1%)
Frame = +2
Query: 176 THSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEEM--KAKSCVQWLREEP-SYFN 346
+HSL+Y ++ +S G +++ G +DD F+R+ ++ + + W+ +E Y++
Sbjct: 51 SHSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYWD 110
Query: 347 DETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPHTLQFNYGCELQQDGRT 526
+T I K R NLR + +N H Q+ H+ + GC++ +GR
Sbjct: 111 RQTDIAKEHSKASRSNLRVIIGNHN------------HSQSESHSFLWVSGCDVGSEGRI 158
Query: 527 -SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNFIERDKNYLEKECIVWL 703
G+ Q+ YDG DY+ L+ D +TA + +AQ ++KWEA+ E+ + YLE EC+ WL
Sbjct: 159 LRGYEQFSYDGDDYIVLNEDLRSWTAISTVAQIIRRKWEAE-GVAEQYRAYLEIECVEWL 217
Query: 704 RRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDM 883
R+YLE + L R PPKTHVTRHP D VTLRCWALGFYPKEISLTWQR+G+DQ+QDM
Sbjct: 218 RKYLEKGKDVLQRAVPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDM 277
Query: 884 ELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWEPP 1030
ELVETRPSGDGTFQKWAALVVP GEEQSYTC VQHEGLQEPLTLRWEPP
Sbjct: 278 ELVETRPSGDGTFQKWAALVVPSGEEQSYTCQVQHEGLQEPLTLRWEPP 326
Score = 24.3 bits (51), Expect(2) = 2e-77
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 1114 WEKKRSGEKGGSYTQAA 1164
W K+ SG G+Y QAA
Sbjct: 352 WRKRNSGGNRGNYVQAA 368
>ref|XP_003361021.1| PREDICTED: class I histocompatibility antigen, Gogo-C*0101/C*0102
alpha chain-like [Sus scrofa].
Length = 374
Score = 272 bits (696), Expect = 3e-73
Identities = 132/286 (46%), Positives = 179/286 (62%), Gaps = 1/286 (0%)
Frame = +2
Query: 176 THSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEEMKAKSCVQWLRE-EPSYFNDE 352
THSL+Y YLA+SE PG+P F A G +DDQ FIRYD+ KA+ W+ + Y+ E
Sbjct: 41 THSLRYHYLALSEPGPGLPQFLAVGYVDDQVFIRYDSRRGKAEPQAPWMAHMDAQYWEKE 100
Query: 353 TKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPHTLQFNYGCELQQDGRTSG 532
TK K+ ++ + V YYNQ+ +G H+ Q +GCE+Q+DG ++G
Sbjct: 101 TKKQRIWAKVQQVEMWTVMGYYNQS-------------SGMHSTQRMFGCEIQEDGHSTG 147
Query: 533 HWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNFIERDKNYLEKECIVWLRRY 712
WQ+G+DG D+LSL L+ L + +A +A TK+ WE +R + E DK Y+E C+ LR+Y
Sbjct: 148 FWQFGFDGQDHLSLDLETLSWVSAEPVAVRTKRWWETERCYAEYDKAYVEGVCLTSLRKY 207
Query: 713 LEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELV 892
LE G+ +R +PP VT+H + D G TLRCWALGFYP++ISL+W ++ + E V
Sbjct: 208 LELGGQRFSRREPPTVRVTKHTAQDGGTTLRCWALGFYPQDISLSWWLGEKELTSKTEYV 267
Query: 893 ETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWEPP 1030
ETRPSGDGT+Q W A VP GEE YTCHVQH L LT+ WE P
Sbjct: 268 ETRPSGDGTYQTWLATQVPAGEEIQYTCHVQHSSLNHTLTVTWESP 313
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 38,145,285
Number of extensions: 1121547
Number of successful extensions: 5348
Number of sequences better than 1.0e-05: 40
Number of HSP's gapped: 5262
Number of HSP's successfully gapped: 51
Length of query: 478
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 375
Effective length of database: 8,779,541
Effective search space: 3292327875
Effective search space used: 3292327875
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001767
(1436 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 593 e-166
>Sscrofa_Chr07
|| Length = 134764511
Score = 593 bits (299), Expect = e-166
Identities = 299/299 (100%)
Strand = Plus / Minus
Query: 174 gaacacattctctgcaatatttctacttggccatgtctgaggctgcaccaggtgtccctg 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26679913 gaacacattctctgcaatatttctacttggccatgtctgaggctgcaccaggtgtccctg 26679854
Query: 234 catttactgctttcggagtcatagacgaccagcccttcattcgctatgacaatgaggaga 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26679853 catttactgctttcggagtcatagacgaccagcccttcattcgctatgacaatgaggaga 26679794
Query: 294 tgaaggcaaaatcttgtgttcagtggttgagggaggagccaagttacttcaatgatgaga 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26679793 tgaaggcaaaatcttgtgttcagtggttgagggaggagccaagttacttcaatgatgaga 26679734
Query: 354 ccaagatcttcaccagtcggatgaagatcttccgcttaaatctgaggaacgtgcagcgat 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26679733 ccaagatcttcaccagtcggatgaagatcttccgcttaaatctgaggaacgtgcagcgat 26679674
Query: 414 attacaaccaaaccatggagaatgggctgaacaaagccctggagcacaagcaaacaggt 472
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26679673 attacaaccaaaccatggagaatgggctgaacaaagccctggagcacaagcaaacaggt 26679615
Score = 553 bits (279), Expect = e-155
Identities = 279/279 (100%)
Strand = Plus / Minus
Query: 468 caggtccccacaccctccagttcaactacggctgtgagctccagcaggatggccggacct 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26677051 caggtccccacaccctccagttcaactacggctgtgagctccagcaggatggccggacct 26676992
Query: 528 cagggcactggcagtatggctatgatggtgccgactacctgagcttgcatctggatcctc 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26676991 cagggcactggcagtatggctatgatggtgccgactacctgagcttgcatctggatcctc 26676932
Query: 588 tgcagtacacagcggccacattcattgctcaatataccaagcaaaaatgggaggccgata 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26676931 tgcagtacacagcggccacattcattgctcaatataccaagcaaaaatgggaggccgata 26676872
Query: 648 ggaacttcatagagagagacaagaactacttggagaaagagtgcattgtctggctgcgga 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26676871 ggaacttcatagagagagacaagaactacttggagaaagagtgcattgtctggctgcgga 26676812
Query: 708 gatacttggagtttgcaggggagagcttgaaccgcactg 746
|||||||||||||||||||||||||||||||||||||||
Sbjct: 26676811 gatacttggagtttgcaggggagagcttgaaccgcactg 26676773
Score = 541 bits (273), Expect = e-151
Identities = 276/277 (99%)
Strand = Plus / Minus
Query: 746 gaccctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttgagg 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26675876 gaccctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttgagg 26675817
Query: 806 tgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggccag 865
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 26675816 tgctgggccctgggcttctaccctaaggagatctccctgaactggcagcgcgagggccag 26675757
Query: 866 gaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttccag 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26675756 gaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttccag 26675697
Query: 926 aagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcag 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26675696 aagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcag 26675637
Query: 986 cacgagggcctgcaggagcccctcaccctgagatggg 1022
|||||||||||||||||||||||||||||||||||||
Sbjct: 26675636 cacgagggcctgcaggagcccctcaccctgagatggg 26675600
Score = 535 bits (270), Expect = e-149
Identities = 273/274 (99%)
Strand = Plus / Minus
Query: 749 cctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttgaggtgc 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24685328 cctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttgaggtgc 24685269
Query: 809 tgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggccaggac 868
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 24685268 tgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggccaggac 24685209
Query: 869 cagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttccagaag 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24685208 cagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttccagaag 24685149
Query: 929 tgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcac 988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24685148 tgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcac 24685089
Query: 989 gagggcctgcaggagcccctcaccctgagatggg 1022
||||||||||||||||||||||||||||||||||
Sbjct: 24685088 gagggcctgcaggagcccctcaccctgagatggg 24685055
Score = 533 bits (269), Expect = e-149
Identities = 275/277 (99%)
Strand = Plus / Minus
Query: 746 gaccctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttgagg 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24706184 gaccctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttgagg 24706125
Query: 806 tgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggccag 865
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 24706124 tgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggccag 24706065
Query: 866 gaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttccag 925
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24706064 gaccagagccaggacttggagctggtggagaccaggccctcaggggatgggaccttccag 24706005
Query: 926 aagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcag 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24706004 aagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcag 24705945
Query: 986 cacgagggcctgcaggagcccctcaccctgagatggg 1022
|||||||||||||||||||||||||||||||||||||
Sbjct: 24705944 cacgagggcctgcaggagcccctcaccctgagatggg 24705908
Score = 519 bits (262), Expect = e-144
Identities = 271/274 (98%)
Strand = Plus / Minus
Query: 749 cctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttgaggtgc 808
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 24643492 cctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccctgaggtgc 24643433
Query: 809 tgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggccaggac 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24643432 tgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggccaggac 24643373
Query: 869 cagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttccagaag 928
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24643372 cagagccaagacatggagctggtggagaccaggccctcaggggatgggaccttccagaag 24643313
Query: 929 tgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcac 988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24643312 tgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcac 24643253
Query: 989 gagggcctgcaggagcccctcaccctgagatggg 1022
||||||||||||||||||||||||||||||||||
Sbjct: 24643252 gagggcctgcaggagcccctcaccctgagatggg 24643219
Score = 511 bits (258), Expect = e-142
Identities = 270/274 (98%)
Strand = Plus / Minus
Query: 749 cctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttgaggtgc 808
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 24749843 cctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccttgaggtgc 24749784
Query: 809 tgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggccaggac 868
||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 24749783 tgggctctgggcttccaccctaaggagatctccctgacctggcagcgggagggccaggac 24749724
Query: 869 cagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttccagaag 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24749723 cagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttccagaag 24749664
Query: 929 tgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcac 988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24749663 tgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcac 24749604
Query: 989 gagggcctgcaggagcccctcaccctgagatggg 1022
||||||||||||||||||||||||||||||||||
Sbjct: 24749603 gagggcctgcaggagcccctcaccctgagatggg 24749570
Score = 496 bits (250), Expect = e-137
Identities = 269/274 (98%), Gaps = 1/274 (0%)
Strand = Plus / Minus
Query: 749 cctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttgaggtgc 808
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 24657268 cctccaaagacacatgtgacccgccaccccagctctgacctgagggtcaccttgaggtgc 24657209
Query: 809 tgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggccaggac 868
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 24657208 tgggccctgggcttctaccctaaggagatctccctgacctggcagcgggaggggcaggac 24657149
Query: 869 cagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttccagaag 928
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 24657148 cagagccaggacatggagctggtggagaccaggccctca-gggatgggaccttccagaag 24657090
Query: 929 tgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcac 988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24657089 tgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcac 24657030
Query: 989 gagggcctgcaggagcccctcaccctgagatggg 1022
||||||||||||||||||||||||||||||||||
Sbjct: 24657029 gagggcctgcaggagcccctcaccctgagatggg 24656996
Score = 496 bits (250), Expect = e-137
Identities = 268/274 (97%)
Strand = Plus / Minus
Query: 749 cctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttgaggtgc 808
|||||||||||||||||||||| | |||||||||||||||| ||||||||| ||||||||
Sbjct: 24722396 cctccaaagacacatgtgacccactaccccagctctgacctgggggtcaccctgaggtgc 24722337
Query: 809 tgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggccaggac 868
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 24722336 tgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggccaagac 24722277
Query: 869 cagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttccagaag 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24722276 cagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttccagaag 24722217
Query: 929 tgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcac 988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24722216 tgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcac 24722157
Query: 989 gagggcctgcaggagcccctcaccctgagatggg 1022
||||||||||||||||||||||||||||||||||
Sbjct: 24722156 gagggcctgcaggagcccctcaccctgagatggg 24722123
Score = 440 bits (222), Expect = e-121
Identities = 261/274 (95%)
Strand = Plus / Plus
Query: 749 cctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttgaggtgc 808
||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 27616067 cctccaaagacacatgtgacccgccaccccagctctgacaataaagtcaccttgaggtgc 27616126
Query: 809 tgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggccaggac 868
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 27616127 tgggccctgggcttctaccctaaggagatctccctgacctggcagcaggaggggcaggac 27616186
Query: 869 cagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttccagaag 928
|||||||||||| ||||| | ||||| |||||||||||||||||||||||||||||||||
Sbjct: 27616187 cagagccaggacgtggaggttgtggaaaccaggccctcaggggatgggaccttccagaag 27616246
Query: 929 tgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcac 988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27616247 tgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcac 27616306
Query: 989 gagggcctgcaggagcccctcaccctgagatggg 1022
||||||||||||||||||||||||||||||||||
Sbjct: 27616307 gagggcctgcaggagcccctcaccctgagatggg 27616340
Score = 391 bits (197), Expect = e-106
Identities = 257/277 (92%)
Strand = Plus / Minus
Query: 746 gaccctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttgagg 805
||||| |||||| || |||||||| ||||||||||||||||| |||||| |||||
Sbjct: 27628606 gaccccccaaaggcatatgtgacctgccaccccagctctgacaataaagtcaccctgagg 27628547
Query: 806 tgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggccag 865
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||
Sbjct: 27628546 tgctgggccctgggcttctaccctaaggagatctccctgacctggcggcgggaggggcag 27628487
Query: 866 gaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttccag 925
||||||||||||||| ||||| | ||||| ||||||||||||||||||||||||||||||
Sbjct: 27628486 gaccagagccaggacgtggaggttgtggaaaccaggccctcaggggatgggaccttccag 27628427
Query: 926 aagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcag 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 27628426 aagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgaag 27628367
Query: 986 cacgagggcctgcaggagcccctcaccctgagatggg 1022
|||||||||||||||||||| ||||||||||||||||
Sbjct: 27628366 cacgagggcctgcaggagccactcaccctgagatggg 27628330
Score = 383 bits (193), Expect = e-103
Identities = 212/217 (97%), Gaps = 1/217 (0%)
Strand = Plus / Minus
Query: 1215 agtgtgagacagctgccttgtggggactaagtgttacgagattcgtttacatcccacttt 1274
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 26674560 agtgtgagacagctgccttgtggggaccaagtgttacgagattcgttcacatcccacttt 26674501
Query: 1275 gtgacttcagatcccctgactcctgtttctgcagcagcatttgagtgtgtctgtgtccct 1334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26674500 gtgacttcagatcccctgactcctgtttctgcagcagcatttgagtgtgtctgtgtccct 26674441
Query: 1335 atgagcatcatgagagggaggtggggaccctggcccagctctgtcccccacgtcccctcc 1394
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 26674440 atgagcatcatgaga-ggaggtggggaccctggcccagccctgtcccccacgtcccctcc 26674382
Query: 1395 tcaccctgacctgtgttctcgtccctgatcctctttc 1431
|||||||||||||||||||| ||||||||||||||||
Sbjct: 26674381 tcaccctgacctgtgttctcttccctgatcctctttc 26674345
Score = 369 bits (186), Expect = 3e-99
Identities = 252/274 (91%)
Strand = Plus / Plus
Query: 749 cctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttgaggtgc 808
||||||||||| |||||||||||||||||| || |||| ||||| | || |||
Sbjct: 27604571 cctccaaagactcatgtgacccgccaccccttctatgacaataaagtcactctaagatgc 27604630
Query: 809 tgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggccaggac 868
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 27604631 tgggccctgggcttctaccctaaggagatctccctgacctggcagcaggaggggcaggac 27604690
Query: 869 cagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttccagaag 928
|||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 27604691 cagacccaggacatggagctcgtggagaccaggccttcaggggatgggaccttccagaag 27604750
Query: 929 tgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcac 988
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 27604751 tgggcggccctggtggtgccttctggagaggagcagagctacacctgccaggtgcagcac 27604810
Query: 989 gagggcctgcaggagcccctcaccctgagatggg 1022
||||||||||||||||||||||||||||||||||
Sbjct: 27604811 gagggcctgcaggagcccctcaccctgagatggg 27604844
Score = 345 bits (174), Expect = 4e-92
Identities = 174/174 (100%)
Strand = Plus / Minus
Query: 1 aaggcaccaccccgctggggagctgcagcagaaccagctctctcctcgctgtgtccctca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26684657 aaggcaccaccccgctggggagctgcagcagaaccagctctctcctcgctgtgtccctca 26684598
Query: 61 gccgcccggttatgcccgggaaggttgggacccagtcacagcagctgaggcgatgtggtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26684597 gccgcccggttatgcccgggaaggttgggacccagtcacagcagctgaggcgatgtggtg 26684538
Query: 121 ggctcccgtcctcttacactccttcctgagctctctgcaggagacccgagcccg 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26684537 ggctcccgtcctcttacactccttcctgagctctctgcaggagacccgagcccg 26684484
Score = 303 bits (153), Expect = 1e-79
Identities = 203/217 (93%), Gaps = 2/217 (0%)
Strand = Plus / Plus
Query: 1215 agtgtgagacagctgccttgtggggactaagtgttacgagattcgtttacatcccacttt 1274
|||||||||||||||||||||||||||| |||| || ||||| ||| || |||||||||
Sbjct: 24604646 agtgtgagacagctgccttgtggggactgagtgacac-agatttgttcacgtcccacttt 24604704
Query: 1275 gtgacttcagatcccctgactcctgtttctgcagcagcatttgagtgtgtctgtgtccct 1334
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 24604705 gtgacttcagatcccctgactcctgtttctgcagcagcatttgaatgtgtctgtgtccct 24604764
Query: 1335 atgagcatcatgagagggaggtggggaccctggcccagctctgtcccccacgtcccctcc 1394
||||||||| ||||| |||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 24604765 atgagcatcctgaga-ggaggtggggaccctggcccagtcctgccccccacgtcccctcc 24604823
Query: 1395 tcaccctgacctgtgttctcgtccctgatcctctttc 1431
|||||||||||||||||||| ||||||||||||||||
Sbjct: 24604824 tcaccctgacctgtgttctcttccctgatcctctttc 24604860
Score = 278 bits (140), Expect = 8e-72
Identities = 198/216 (91%), Gaps = 1/216 (0%)
Strand = Plus / Minus
Query: 1215 agtgtgagacagctgccttgtggggactaagtgttacgagattcgtttacatcccacttt 1274
|||||||||||||||||||||||||||| |||| || ||||| ||| || |||||||||
Sbjct: 24704880 agtgtgagacagctgccttgtggggactgagtgacacaagatttgttcacgtcccacttt 24704821
Query: 1275 gtgacttcagatcccctgactcctgtttctgcagcagcatttgagtgtgtctgtgtccct 1334
|||||||||||||||||||||||| |||||||||| |||| ||| ||||||||||| |||
Sbjct: 24704820 gtgacttcagatcccctgactcctatttctgcagctgcatctgaatgtgtctgtgttcct 24704761
Query: 1335 atgagcatcatgagagggaggtggggaccctggcccagctctgtcccccacgtcccctcc 1394
||| ||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 24704760 atgcgcatcatgaga-ggaggtggggacactggcccagccctgtcccccacgtcccctcc 24704702
Query: 1395 tcaccctgacctgtgttctcgtccctgatcctcttt 1430
|||||||||||||||||||| |||||||||| ||||
Sbjct: 24704701 tcaccctgacctgtgttctcttccctgatccacttt 24704666
Score = 272 bits (137), Expect = 5e-70
Identities = 198/217 (91%), Gaps = 1/217 (0%)
Strand = Plus / Minus
Query: 1215 agtgtgagacagctgccttgtggggactaagtgttacgagattcgtttacatcccacttt 1274
||||||||||| |||||||||||||||| || | || ||||| ||| ||||||||||||
Sbjct: 24748521 agtgtgagacaactgccttgtggggactgagggacacaagatttgttcacatcccacttt 24748462
Query: 1275 gtgacttcagatcccctgactcctgtttctgcagcagcatttgagtgtgtctgtgtccct 1334
||||||||||||||||||||||||||||||||||| |||| ||| | |||||||| |||
Sbjct: 24748461 gtgacttcagatcccctgactcctgtttctgcagctgcatctgaaagggtctgtgttcct 24748402
Query: 1335 atgagcatcatgagagggaggtggggaccctggcccagctctgtcccccacgtcccctcc 1394
||||||||| ||||| ||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 24748401 atgagcatcctgaga-ggaggtggggaccctggcccagccctgccccccacgtcccctcc 24748343
Query: 1395 tcaccctgacctgtgttctcgtccctgatcctctttc 1431
|||||||||||||||||||| ||||||||||||||||
Sbjct: 24748342 tcaccctgacctgtgttctcttccctgatcctctttc 24748306
Score = 232 bits (117), Expect = 4e-58
Identities = 193/217 (88%), Gaps = 1/217 (0%)
Strand = Plus / Minus
Query: 1215 agtgtgagacagctgccttgtggggactaagtgttacgagattcgtttacatcccacttt 1274
||||||||| ||||||||||| |||||| || | || ||||| ||| || |||||||||
Sbjct: 24721089 agtgtgagagagctgccttgtagggactgagggacacaagatttgttcacgtcccacttt 24721030
Query: 1275 gtgacttcagatcccctgactcctgtttctgcagcagcatttgagtgtgtctgtgtccct 1334
|||||| ||||||||||||||| ||||||||||||||||| ||| |||||||||| |||
Sbjct: 24721029 gtgactccagatcccctgactcttgtttctgcagcagcatctgaaagtgtctgtgttcct 24720970
Query: 1335 atgagcatcatgagagggaggtggggaccctggcccagctctgtcccccacgtcccctcc 1394
||||||||||||||| ||||||||||||||||||||| ||| |||||| ||||||| |
Sbjct: 24720969 atgagcatcatgaga-agaggtggggaccctggcccagtcctgccccccatgtccccttc 24720911
Query: 1395 tcaccctgacctgtgttctcgtccctgatcctctttc 1431
|||||||||||||||||||| ||||||||||||||||
Sbjct: 24720910 tcaccctgacctgtgttctcttccctgatcctctttc 24720874
Score = 224 bits (113), Expect = 1e-55
Identities = 192/217 (88%), Gaps = 1/217 (0%)
Strand = Plus / Minus
Query: 1215 agtgtgagacagctgccttgtggggactaagtgttacgagattcgtttacatcccacttt 1274
||||||||||||||||||||||||||||||| | || ||||| ||| || |||||||||
Sbjct: 24642186 agtgtgagacagctgccttgtggggactaagggacacaagatttgttcacgtcccacttt 24642127
Query: 1275 gtgacttcagatcccctgactcctgtttctgcagcagcatttgagtgtgtctgtgtccct 1334
||||||||||| |||||||||||| |||||||||| || | ||| | |||||||| |||
Sbjct: 24642126 gtgacttcagaccccctgactcctatttctgcagctgcctctgaaagggtctgtgttcct 24642067
Query: 1335 atgagcatcatgagagggaggtggggaccctggcccagctctgtcccccacgtcccctcc 1394
||||||||| ||||| ||||||||||||||||||||||| ||| |||||| ||||||||
Sbjct: 24642066 atgagcatcctgaga-ggaggtggggaccctggcccagccctgccccccatgtcccctct 24642008
Query: 1395 tcaccctgacctgtgttctcgtccctgatcctctttc 1431
|||||||||||||||||||| | |||||||| |||||
Sbjct: 24642007 tcaccctgacctgtgttctctttcctgatccactttc 24641971
Score = 222 bits (112), Expect = 4e-55
Identities = 191/216 (88%), Gaps = 1/216 (0%)
Strand = Plus / Minus
Query: 1215 agtgtgagacagctgccttgtggggactaagtgttacgagattcgtttacatcccacttt 1274
|||||||||||||||||||||||||||| || | || ||||| ||| || |||||||||
Sbjct: 24655959 agtgtgagacagctgccttgtggggactgagggacacaagatttgttcacgtcccacttt 24655900
Query: 1275 gtgacttcagatcccctgactcctgtttctgcagcagcatttgagtgtgtctgtgtccct 1334
||||||||||||||||||||||||||||||||||| || | ||| |||||||||| ||
Sbjct: 24655899 gtgacttcagatcccctgactcctgtttctgcagctgcctctgaaagtgtctgtgtttct 24655840
Query: 1335 atgagcatcatgagagggaggtggggaccctggcccagctctgtcccccacgtcccctcc 1394
||||||||||||||| | ||||||| || |||||| | | ||||||||||| ||||||||
Sbjct: 24655839 atgagcatcatgaga-gtaggtgggaacactggcctaaccctgtcccccacatcccctcc 24655781
Query: 1395 tcaccctgacctgtgttctcgtccctgatcctcttt 1430
|||||||||||||||||||| |||||||||| ||||
Sbjct: 24655780 tcaccctgacctgtgttctcttccctgatccacttt 24655745
Score = 172 bits (87), Expect = 3e-40
Identities = 184/217 (84%), Gaps = 12/217 (5%)
Strand = Plus / Minus
Query: 1215 agtgtgagacagctgccttgtggggactaagtgttacgagattcgtttacatcccacttt 1274
|||||||||||||||||||||||| ||| || | || ||||| ||| || |||||||||
Sbjct: 24684019 agtgtgagacagctgccttgtgggaactgagggacacaagatttgttcacgtcccacttt 24683960
Query: 1275 gtgacttcagatcccctgactcctgtttctgcagcagcatttgagtgtgtctgtgtccct 1334
|||| | |||||||||||||||||||||||||||| || | ||| | |||||||| |||
Sbjct: 24683959 gtgaatccagatcccctgactcctgtttctgcagctgcctctgaaagggtctgtgttcct 24683900
Query: 1335 atgagcatcatgagagggaggtggggaccctggcccagctctgtcccccacgtcccctcc 1394
||||||||| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 24683899 atgagcatcctgaga-ggaggtggggaccctgg-----------cccccacgtcccctcc 24683852
Query: 1395 tcaccctgacctgtgttctcgtccctgatcctctttc 1431
|||||||||||||||||||| ||| ||||||||||||
Sbjct: 24683851 tcaccctgacctgtgttctcttccatgatcctctttc 24683815
Score = 163 bits (82), Expect = 3e-37
Identities = 107/114 (93%), Gaps = 1/114 (0%)
Strand = Plus / Minus
Query: 1022 gaacctcctcagccccccgtccc-atcgtgggcatctttgttggcctggttctcgtcctg 1080
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 26675481 gaacctccacagccccccgtccccatcgtgggcatctttgttggcctggttctcgtcctg 26675422
Query: 1081 gtcgctggaaccatggtggctggagttatgagctgggagaagaagcgctcaggt 1134
||||||||| ||||||||||||||||| ||| |||| ||||||||||||||||
Sbjct: 26675421 gtcgctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 26675368
Score = 149 bits (75), Expect = 5e-33
Identities = 103/111 (92%), Gaps = 1/111 (0%)
Strand = Plus / Plus
Query: 1025 cctcctcagccccccgtccc-atcgtgggcatctttgttggcctggttctcgtcctggtc 1083
||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 24603750 cctcctcagccccccatccccatcgtgggcatcattgttggcctggttctcgtcctggtc 24603809
Query: 1084 gctggaaccatggtggctggagttatgagctgggagaagaagcgctcaggt 1134
|||||| ||||||||||||||||| ||| |||| ||||||||||||||||
Sbjct: 24603810 gctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 24603860
Score = 149 bits (75), Expect = 5e-33
Identities = 103/111 (92%), Gaps = 1/111 (0%)
Strand = Plus / Minus
Query: 1025 cctcctcagccccccgtccc-atcgtgggcatctttgttggcctggttctcgtcctggtc 1083
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 24749448 cctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctggtc 24749389
Query: 1084 gctggaaccatggtggctggagttatgagctgggagaagaagcgctcaggt 1134
|||||| || |||||||||||||| ||| |||| ||||||||||||||||
Sbjct: 24749388 gctggagccgtggtggctggagttgtgatctggaggaagaagcgctcaggt 24749338
Score = 133 bits (67), Expect = 3e-28
Identities = 101/111 (90%), Gaps = 1/111 (0%)
Strand = Plus / Minus
Query: 1025 cctcctcagccccccgtccc-atcgtgggcatctttgttggcctggttctcgtcctggtc 1083
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 24643098 cctcctcagccccccgtccccatcgtgggcatcactgttggcctggttctcgtcctggtt 24643039
Query: 1084 gctggaaccatggtggctggagttatgagctgggagaagaagcgctcaggt 1134
|||||| || |||||||||||||| ||| |||| ||||||||||||||||
Sbjct: 24643038 gctggagccgtggtggctggagttgtgatctggaggaagaagcgctcaggt 24642988
Score = 133 bits (67), Expect = 3e-28
Identities = 101/111 (90%), Gaps = 1/111 (0%)
Strand = Plus / Plus
Query: 1025 cctcctcagccccccgtccc-atcgtgggcatctttgttggcctggttctcgtcctggtc 1083
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 27616461 cctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctggtc 27616520
Query: 1084 gctggaaccatggtggctggagttatgagctgggagaagaagcgctcaggt 1134
|||||| || ||||| |||||||| ||| |||| ||||||| ||||||||
Sbjct: 27616521 gctggagccgtggtgactggagttgtgatctggaggaagaagtgctcaggt 27616571
Score = 125 bits (63), Expect = 7e-26
Identities = 97/107 (90%), Gaps = 1/107 (0%)
Strand = Plus / Minus
Query: 1029 ctcagccccccgtccc-atcgtgggcatctttgttggcctggttctcgtcctggtcgctg 1087
|||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 24721998 ctcagccccccgtccccatcgtgggcatcactgttggcctggttctggtcctggtcgctg 24721939
Query: 1088 gaaccatggtggctggagttatgagctgggagaagaagcgctcaggt 1134
|| ||||||||||||||| | ||| |||| ||||||||||||||||
Sbjct: 24721938 gagccatggtggctggagctgtgatctggaggaagaagcgctcaggt 24721892
Score = 117 bits (59), Expect = 2e-23
Identities = 96/107 (89%), Gaps = 1/107 (0%)
Strand = Plus / Minus
Query: 1029 ctcagccccccgtccc-atcgtgggcatctttgttggcctggttctcgtcctggtcgctg 1087
|||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 24684930 ctcagccccccgtccccatcgtgggcatcattgttggcctggttctggtcctggtcgctg 24684871
Query: 1088 gaaccatggtggctggagttatgagctgggagaagaagcgctcaggt 1134
|| | |||||||||||||| ||| |||| ||||| ||||||||||
Sbjct: 24684870 gagctgtggtggctggagttgtgatctggaggaagacgcgctcaggt 24684824
Score = 117 bits (59), Expect = 2e-23
Identities = 96/107 (89%), Gaps = 1/107 (0%)
Strand = Plus / Minus
Query: 1029 ctcagccccccgtccc-atcgtgggcatctttgttggcctggttctcgtcctggtcgctg 1087
|||||||||||||||| || ||||||||| ||||||||||||||| |||||||||||||
Sbjct: 24705782 ctcagccccccgtccccatggtgggcatcactgttggcctggttcttgtcctggtcgctg 24705723
Query: 1088 gaaccatggtggctggagttatgagctgggagaagaagcgctcaggt 1134
|| ||||||||||||||||| ||| |||| ||||||| ||||||||
Sbjct: 24705722 gagccatggtggctggagttgtgatctggaggaagaagtgctcaggt 24705676
Score = 99.6 bits (50), Expect = 4e-18
Identities = 53/54 (98%)
Strand = Plus / Minus
Query: 1163 caggcagggacagtacccagagctctggtgtgtccctcatcaaggatcctagag 1216
|||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 26674772 caggcagggacagtgcccagagctctggtgtgtccctcatcaaggatcctagag 26674719
Score = 93.7 bits (47), Expect = 3e-16
Identities = 93/107 (86%), Gaps = 1/107 (0%)
Strand = Plus / Minus
Query: 1029 ctcagccccccgtccc-atcgtgggcatctttgttggcctggttctcgtcctggtcgctg 1087
|||||||||| ||||| || |||| |||| ||||||||||||| || ||||||||| |||
Sbjct: 24656871 ctcagccccctgtccccattgtggacatcattgttggcctggtactggtcctggtctctg 24656812
Query: 1088 gaaccatggtggctggagttatgagctgggagaagaagcgctcaggt 1134
|| |||||||| |||||||| ||| |||| ||||||||||||||||
Sbjct: 24656811 gagccatggtgactggagttgtgatctggaggaagaagcgctcaggt 24656765
Score = 77.8 bits (39), Expect = 2e-11
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 1128 ctcaggtgaaaaaggagggagctacactcaggctgcagg 1166
|||||||||||||||||||||||||||||||||||||||
Sbjct: 24604269 ctcaggtgaaaaaggagggagctacactcaggctgcagg 24604307
Score = 73.8 bits (37), Expect = 2e-10
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 1130 caggtgaaaaaggagggagctacactcaggctgcagg 1166
|||||||||||||||||||||||||||||||||||||
Sbjct: 24642561 caggtgaaaaaggagggagctacactcaggctgcagg 24642525
Score = 73.8 bits (37), Expect = 2e-10
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 1130 caggtgaaaaaggagggagctacactcaggctgcagg 1166
|||||||||||||||||||||||||||||||||||||
Sbjct: 24684394 caggtgaaaaaggagggagctacactcaggctgcagg 24684358
Score = 73.8 bits (37), Expect = 2e-10
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 1130 caggtgaaaaaggagggagctacactcaggctgcagg 1166
|||||||||||||||||||||||||||||||||||||
Sbjct: 24748893 caggtgaaaaaggagggagctacactcaggctgcagg 24748857
Score = 67.9 bits (34), Expect = 1e-08
Identities = 49/54 (90%)
Strand = Plus / Minus
Query: 1163 caggcagggacagtacccagagctctggtgtgtccctcatcaaggatcctagag 1216
||||||| |||||| ||||| |||||| ||||||||||| ||||||||||||||
Sbjct: 24642398 caggcagtgacagtgcccagggctctgatgtgtccctcaccaaggatcctagag 24642345
Score = 65.9 bits (33), Expect = 6e-08
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 1134 tgaaaaaggagggagctacactcaggctgcagg 1166
|||||||||||||||||||||||||||||||||
Sbjct: 26674930 tgaaaaaggagggagctacactcaggctgcagg 26674898
Score = 63.9 bits (32), Expect = 2e-07
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 1130 caggtgaaaaaggagggagctacactcaggct 1161
||||||||||||||||||||||||||||||||
Sbjct: 24721463 caggtgaaaaaggagggagctacactcaggct 24721432
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 42,138,935
Number of extensions: 354
Number of successful extensions: 354
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 340
Number of HSP's successfully gapped: 40
Length of query: 1436
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1415
Effective length of database: 2,808,413,156
Effective search space: 3973904615740
Effective search space used: 3973904615740
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)