Animal-Genome cDNA 20110601C-001767


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001767
         (1436 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001070309.1| major histocompatibility complex, class I [B...   533   e-151
Alignment   gi|NP_001035588.1| MHC Class I JSP.1 [Bos taurus].                   332   2e-97
Alignment   gi|NP_001033607.1| MHC class I heavy chain isoform 1 [Bos tauru...   333   3e-97
Alignment   gi|NP_001108327.1| major histocompatibility complex, class I, A...   325   1e-93
Alignment   gi|NP_001035622.1| MHC class I heavy chain isoform 2 [Bos tauru...   318   1e-93
Alignment   gi|NP_001137215.1| hypothetical protein LOC790811 [Bos taurus].      320   3e-93
Alignment   gi|NP_001035644.1| major histocompatibility complex, class I, A...   321   1e-92
Alignment   gi|NP_001098957.1| hypothetical protein LOC100125916 [Bos tauru...   321   3e-92
Alignment   gi|NP_001099121.1| BOLA class I histocompatibility antigen, alp...   323   1e-91
Alignment   gi|XP_002697395.1| PREDICTED: MHC class I heavy chain [Bos taur...   315   7e-91

>ref|NP_001070309.1| major histocompatibility complex, class I [Bos taurus].
          Length = 353

 Score =  533 bits (1374), Expect = e-151
 Identities = 248/311 (79%), Positives = 272/311 (87%)
 Frame = +2

Query: 113  MWWAPVLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEE 292
            M W PVLL+ FL+ L ET+ R+HSLQYFY  +SE  PGVP+F AFG +D+QPFIRYD+EE
Sbjct: 1    MLWGPVLLYFFLAYLPETQTRSHSLQYFYSVVSEPGPGVPSFMAFGFVDNQPFIRYDSEE 60

Query: 293  MKAKSCVQWLREEPSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTG 472
            MKAKSCV WLREEPSYF+DETKIFTSRMKIF LNLRNVQ+YYNQT E+GLN+AL  KQT 
Sbjct: 61   MKAKSCVHWLREEPSYFDDETKIFTSRMKIFHLNLRNVQQYYNQTKEDGLNRALAQKQTS 120

Query: 473  PHTLQFNYGCELQQDGRTSGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRN 652
            PHTLQF YGCEL +DGRT+ HWQYGYDG DYLSLH+DPLQYTAATF+AQYTKQKWEA  N
Sbjct: 121  PHTLQFTYGCELLEDGRTTWHWQYGYDGEDYLSLHMDPLQYTAATFVAQYTKQKWEAGGN 180

Query: 653  FIERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPK 832
            FIERDKNYLEKECI+WL RYL F GESLNRT+PPKTH+T H  SD  VTLRCWALGFYP 
Sbjct: 181  FIERDKNYLEKECILWLWRYLTFGGESLNRTEPPKTHMTHHRISDREVTLRCWALGFYPA 240

Query: 833  EISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLT 1012
            +ISLTWQREG+DQ+QDMELVETRPSGDGTFQKWAALVVP GEEQ YTC VQHEGLQEPLT
Sbjct: 241  KISLTWQREGEDQTQDMELVETRPSGDGTFQKWAALVVPSGEEQKYTCRVQHEGLQEPLT 300

Query: 1013 LRWEPPQPPVP 1045
            LRWEP +  VP
Sbjct: 301  LRWEPLKTSVP 311


>ref|NP_001035588.1| MHC Class I JSP.1 [Bos taurus].
          Length = 359

 Score =  332 bits (852), Expect(2) = 2e-97
 Identities = 167/306 (54%), Positives = 210/306 (68%), Gaps = 4/306 (1%)
 Frame = +2

Query: 128  VLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNE--EMKA 301
            +LL S +  L ETRA +HSL+YFY A+S    G P F   G +DD  F+R+D++  + + 
Sbjct: 7    LLLLSGVLVLTETRAGSHSLRYFYTAVSRPGLGEPRFIIVGYVDDTQFVRFDSDAGDPRV 66

Query: 302  KSCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPH 478
            +   +W+ +E P Y++ ET+      + FRL L  ++ YYNQ+            + G H
Sbjct: 67   EPRARWVEQEGPEYWDQETRKAKDHAQFFRLGLNTLRGYYNQS------------EAGSH 114

Query: 479  TLQFNYGCELQQDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNF 655
            TLQ+ YGC++  DGR   G WQ+GY+G DY++L+ D   +TAA   AQ +K+KWEA  + 
Sbjct: 115  TLQWMYGCDVGPDGRLLRGFWQFGYEGRDYIALNEDLRSWTAADTAAQISKRKWEA-ADV 173

Query: 656  IERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKE 835
             ER +NYLE  C+ WL RYLE   ++L R DPPK HVT HP S   VTLRCWALGFYP+E
Sbjct: 174  AERQRNYLEGTCVEWLPRYLENGKDTLLRADPPKAHVTHHPISGREVTLRCWALGFYPEE 233

Query: 836  ISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTL 1015
            ISLTWQR G+DQ+QDMELVETRPSGDGTFQKW ALVVP GEEQ YTC VQHEGLQEPLTL
Sbjct: 234  ISLTWQRNGEDQTQDMELVETRPSGDGTFQKWVALVVPSGEEQRYTCSVQHEGLQEPLTL 293

Query: 1016 RWEPPQ 1033
            RWEPPQ
Sbjct: 294  RWEPPQ 299



 Score = 43.1 bits (100), Expect(2) = 2e-97
 Identities = 20/29 (68%), Positives = 22/29 (75%)
 Frame = +1

Query: 1114 WEKKRSGEKGGSYTQAAGRDSTQSSGVSL 1200
            W KKRSGEKGG+Y QA+  DS Q S VSL
Sbjct: 326  WMKKRSGEKGGNYIQASRSDSAQGSDVSL 354


>ref|NP_001033607.1| MHC class I heavy chain isoform 1 [Bos taurus].
          Length = 361

 Score =  333 bits (854), Expect(2) = 3e-97
 Identities = 170/306 (55%), Positives = 211/306 (68%), Gaps = 4/306 (1%)
 Frame = +2

Query: 128  VLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNE--EMKA 301
            +LL S +  L ET A +HSL+YFY  +S    G P F A G +DD  F+R+D++  + + 
Sbjct: 10   LLLLSGVLVLTETLAGSHSLRYFYTGVSRPGLGEPRFIAVGYVDDTQFVRFDSDAADPRT 69

Query: 302  KSCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPH 478
            +  V W+ +E P Y++ ET+      + FR+NL  +  YYNQ+            + G H
Sbjct: 70   EPRVPWMEQEGPEYWDRETRNLKDAAQTFRVNLNTLLGYYNQS------------EAGSH 117

Query: 479  TLQFNYGCELQQDGR-TSGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNF 655
            TLQ+ YGC+++ DGR   G+ Q  YDG DY++L+ D   +TAA   AQ TK+KWEA    
Sbjct: 118  TLQWMYGCDVEPDGRFLRGYRQDAYDGRDYIALNQDLRSWTAADTAAQITKRKWEAAGE- 176

Query: 656  IERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKE 835
             ER +NYLE  C+ WLRRYLE   ++L R DPPK HVTRHPSSD  VTLRCWALGFYP+E
Sbjct: 177  AERRRNYLEGRCVEWLRRYLENGKDTLLRADPPKAHVTRHPSSDREVTLRCWALGFYPEE 236

Query: 836  ISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTL 1015
            ISLTWQ  G+DQ+QDMELVETRPSGDGTFQKWAALVVP GEEQ YTC VQHEGL+EPLTL
Sbjct: 237  ISLTWQHNGEDQTQDMELVETRPSGDGTFQKWAALVVPSGEEQRYTCRVQHEGLREPLTL 296

Query: 1016 RWEPPQ 1033
            RWEPPQ
Sbjct: 297  RWEPPQ 302



 Score = 42.0 bits (97), Expect(2) = 3e-97
 Identities = 20/29 (68%), Positives = 20/29 (68%)
 Frame = +1

Query: 1114 WEKKRSGEKGGSYTQAAGRDSTQSSGVSL 1200
            W KK SGEKG  YTQAA  DS Q S VSL
Sbjct: 328  WRKKHSGEKGRIYTQAASSDSAQGSDVSL 356


>ref|NP_001108327.1| major histocompatibility complex, class I, A [Bos taurus].
          Length = 363

 Score =  325 bits (833), Expect(2) = 1e-93
 Identities = 162/300 (54%), Positives = 206/300 (68%), Gaps = 3/300 (1%)
 Frame = +2

Query: 155  LQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNE--EMKAKSCVQWLRE 328
            L ETRA +HSL+YFY A+S    G P F + G +DD  F+R+D++  + + +   +W+ +
Sbjct: 20   LTETRAGSHSLRYFYTAVSRPGLGEPRFISVGYVDDTQFVRFDSDAPDPRIEPTARWVEQ 79

Query: 329  E-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPHTLQFNYGCE 505
            E P Y++ ET+      + FR+ L  ++ YYNQ+            + G HT+Q  YGC+
Sbjct: 80   EGPEYWHQETQRTKDTAQFFRVYLNTLRGYYNQS------------EAGSHTVQEMYGCD 127

Query: 506  LQQDGRTSGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNFIERDKNYLEK 685
            +  DG   G+ Q+ YDG DY++L+ D   +TAA   AQ TK   EA  +   R + YLE 
Sbjct: 128  VGPDGLLRGYDQFAYDGRDYIALNEDLRSWTAADTAAQVTKHNAEAAGD-AARVRIYLEG 186

Query: 686  ECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQ 865
            +C+ WLRRYL    ++L R DPPKTHV  HP SD  VTLRCWALGFYP+EISLTWQR+G+
Sbjct: 187  KCVEWLRRYLVTGKDTLLRADPPKTHVAHHPISDREVTLRCWALGFYPEEISLTWQRDGE 246

Query: 866  DQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWEPPQPPVP 1045
            DQ+QDMELVETRPSGDGTFQKWAALVVP GEEQ YTCHVQHEGLQEPLTLRWEPPQP +P
Sbjct: 247  DQTQDMELVETRPSGDGTFQKWAALVVPSGEEQRYTCHVQHEGLQEPLTLRWEPPQPSIP 306



 Score = 38.1 bits (87), Expect(2) = 1e-93
 Identities = 21/53 (39%), Positives = 24/53 (45%)
 Frame = +1

Query: 1042 PIVGIFXXXXXXXXXXXXXXXXXSWEKKRSGEKGGSYTQAAGRDSTQSSGVSL 1200
            PI+GI                   W KK SGEKG  Y+QA+  DS Q S V L
Sbjct: 306  PIMGIIVGLVHLMVTGAMVTGAVIWRKKHSGEKGRIYSQASSSDSDQGSDVPL 358


>ref|NP_001035622.1| MHC class I heavy chain isoform 2 [Bos taurus].
          Length = 358

 Score =  318 bits (816), Expect(2) = 1e-93
 Identities = 165/306 (53%), Positives = 208/306 (67%), Gaps = 4/306 (1%)
 Frame = +2

Query: 128  VLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNE--EMKA 301
            +LL S +  L ET A +HSL+YF  A+S    G P F A G +DD  F R+D++    + 
Sbjct: 7    LLLLSGVLVLTETLAGSHSLRYFSTAVSRPGLGEPRFIAVGYVDDTQFTRFDSDAPNPRE 66

Query: 302  KSCVQWLREEP-SYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPH 478
            +  V W+ +E   Y++  T+I+    + FR+ L  ++ YYNQ+            + G H
Sbjct: 67   EPRVPWMEQEGLEYWDRNTRIYKDTAQTFRVYLNALRGYYNQS------------EAGSH 114

Query: 479  TLQFNYGCELQQDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNF 655
            TLQ+  GC++  DGR   G WQ+GYDG +Y++L+ D   +TAA   AQ TK+KWEA    
Sbjct: 115  TLQWMSGCDVGPDGRLLRGFWQFGYDGRNYIALNEDLRSWTAADTAAQITKRKWEA-AGA 173

Query: 656  IERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKE 835
             E ++NY+E  C+  LRRYLE   ++L R DPPK HVT HP S+  VTLRCWALGFYP+E
Sbjct: 174  AEGERNYVEGRCVEGLRRYLENGKDALLRADPPKAHVTHHPISEREVTLRCWALGFYPEE 233

Query: 836  ISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTL 1015
            ISLTWQREG+DQ+QDMELVETRPSGDGTFQKWAALVVP GEEQ YTC VQHEGLQEPLTL
Sbjct: 234  ISLTWQREGEDQTQDMELVETRPSGDGTFQKWAALVVPSGEEQRYTCRVQHEGLQEPLTL 293

Query: 1016 RWEPPQ 1033
            RWEPPQ
Sbjct: 294  RWEPPQ 299



 Score = 44.7 bits (104), Expect(2) = 1e-93
 Identities = 21/29 (72%), Positives = 22/29 (75%)
 Frame = +1

Query: 1114 WEKKRSGEKGGSYTQAAGRDSTQSSGVSL 1200
            W KKRSGEKG  YTQAA  DSTQ S +SL
Sbjct: 325  WRKKRSGEKGRIYTQAASSDSTQGSDMSL 353


>ref|NP_001137215.1| hypothetical protein LOC790811 [Bos taurus].
          Length = 361

 Score =  320 bits (821), Expect(2) = 3e-93
 Identities = 164/308 (53%), Positives = 209/308 (67%), Gaps = 4/308 (1%)
 Frame = +2

Query: 128  VLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNE--EMKA 301
            +LL S +  L  TRA +HS++YF  A+S    G P +   G +DD  F+R+D++    + 
Sbjct: 10   LLLLSGVLVLTGTRAGSHSMRYFSTAVSRPGLGEPQYLEVGYVDDTQFVRFDSDAPNPRM 69

Query: 302  KSCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPH 478
            +   +W+++E P Y+++ET+      ++FR+NL  ++ YYNQ+            + G H
Sbjct: 70   EPRARWVKQEGPEYWDEETQRAKGITQVFRVNLNTLRGYYNQS------------EAGSH 117

Query: 479  TLQFNYGCELQQDGRTS-GHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNF 655
            TLQ+  GC++  DGR   G WQ+GYDG DYL+L+ D   +TAA   AQ +K+K EA    
Sbjct: 118  TLQWMCGCDVGPDGRLRRGFWQFGYDGRDYLALNEDLRSWTAADTGAQISKRKMEA-AGA 176

Query: 656  IERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKE 835
             E  + Y+E  C+ WLRRYLE   ++L R DPPK HVT HP SD  VTLRCWALGFYPKE
Sbjct: 177  AESGRKYVEGTCVEWLRRYLENGKDTLLRADPPKAHVTHHPISDHEVTLRCWALGFYPKE 236

Query: 836  ISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTL 1015
            ISLTWQR G+DQ+QDMELVETRPSGDG FQKWAALVVP GEEQ YTC VQHEGLQEPLTL
Sbjct: 237  ISLTWQRNGEDQTQDMELVETRPSGDGNFQKWAALVVPSGEEQRYTCRVQHEGLQEPLTL 296

Query: 1016 RWEPPQPP 1039
            RWEPPQ P
Sbjct: 297  RWEPPQTP 304



 Score = 41.2 bits (95), Expect(2) = 3e-93
 Identities = 19/29 (65%), Positives = 21/29 (72%)
 Frame = +1

Query: 1114 WEKKRSGEKGGSYTQAAGRDSTQSSGVSL 1200
            W KK SGEKG +YTQA+  DS Q S VSL
Sbjct: 328  WRKKCSGEKGRTYTQASSNDSAQGSDVSL 356


>ref|NP_001035644.1| major histocompatibility complex, class I, A [Bos taurus].
          Length = 362

 Score =  321 bits (822), Expect(2) = 1e-92
 Identities = 161/300 (53%), Positives = 204/300 (68%), Gaps = 3/300 (1%)
 Frame = +2

Query: 155  LQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNE--EMKAKSCVQWLRE 328
            L ET A +HSL+YFY A+S    G P F + G +DD  F+R+D++  + + +   +W+ +
Sbjct: 19   LTETWAGSHSLRYFYTAVSRPGLGEPRFISVGYVDDTQFVRFDSDAPDPRIEPTARWVEQ 78

Query: 329  E-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPHTLQFNYGCE 505
            E P Y++ ET+      + FR+ L  ++ YYNQ+            + G HT+Q  YGC+
Sbjct: 79   EGPEYWHQETQRTKDTAQFFRVYLNTLRGYYNQS------------EAGSHTVQEMYGCD 126

Query: 506  LQQDGRTSGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNFIERDKNYLEK 685
            +  DG   G+ Q+ YDG DY++L+ D   +TAA   AQ TK   EA  +   R + YLE 
Sbjct: 127  VGPDGLLRGYDQFAYDGRDYIALNEDLRSWTAADTAAQVTKHNAEAAGD-AARVRIYLEG 185

Query: 686  ECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQ 865
            +C+ WLRRYL    ++L R DPPKTHV  HP SD  VTLRCWALGFYP EISLTWQR+G+
Sbjct: 186  KCVEWLRRYLVTGKDTLLRADPPKTHVAHHPISDHEVTLRCWALGFYPDEISLTWQRDGE 245

Query: 866  DQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWEPPQPPVP 1045
            DQ+QDMELVETRPSGDGTFQKWAALVVP GEEQ YTCHVQHEGLQEPLTLRWEPPQP +P
Sbjct: 246  DQTQDMELVETRPSGDGTFQKWAALVVPSGEEQRYTCHVQHEGLQEPLTLRWEPPQPSIP 305



 Score = 38.9 bits (89), Expect(2) = 1e-92
 Identities = 22/54 (40%), Positives = 24/54 (44%)
 Frame = +1

Query: 1042 PIVGIFXXXXXXXXXXXXXXXXXSWEKKRSGEKGGSYTQAAGRDSTQSSGVSLI 1203
            PI+GI                   W KK SGEKG  YTQ A   S Q S VSL+
Sbjct: 305  PIMGIIVGLVLLMVTGAVVTGAMIWRKKHSGEKGRGYTQTASSYSDQGSDVSLM 358


>ref|NP_001098957.1| hypothetical protein LOC100125916 [Bos taurus].
          Length = 363

 Score =  321 bits (823), Expect(2) = 3e-92
 Identities = 165/307 (53%), Positives = 208/307 (67%), Gaps = 4/307 (1%)
 Frame = +2

Query: 128  VLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNE--EMKA 301
            +LL S +  L ETRA +HSL+YFY A+S    G P F + G +DD  F+R+D++    + 
Sbjct: 10   LLLLSGVLVLTETRAGSHSLRYFYTAVSRPGLGEPRFISVGYVDDTQFVRFDSDAPNPRM 69

Query: 302  KSCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPH 478
            +   +W+ +E P Y++ ET+      + FR++L  ++ YYNQ+            + G H
Sbjct: 70   EPRARWVEQEGPEYWDRETRNSKDTAQGFRVDLNTLRGYYNQS------------EAGSH 117

Query: 479  TLQFNYGCELQQDGRTS-GHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNF 655
            TLQ  YGC +  DG    G  QYGYDG DYL+L+ D   +TA   +AQ +K+K EA    
Sbjct: 118  TLQLMYGCYVGPDGSLRRGFTQYGYDGRDYLALNEDLRSWTAVETMAQISKRKVEA-AGV 176

Query: 656  IERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKE 835
             E+ +NYLE  C+ WLRRYLE   ++L R DPPK HVTRHP S   VTLRCWALGFYP+E
Sbjct: 177  AEKQRNYLEGRCVEWLRRYLENGKDTLLRADPPKAHVTRHPISGREVTLRCWALGFYPEE 236

Query: 836  ISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTL 1015
            ISLTWQR G+DQ+QDMELVETRPSGDG FQKWAAL+VP GEEQ YTC VQHEGLQEPLTL
Sbjct: 237  ISLTWQRNGEDQTQDMELVETRPSGDGNFQKWAALLVPSGEEQKYTCQVQHEGLQEPLTL 296

Query: 1016 RWEPPQP 1036
            +WEPPQP
Sbjct: 297  KWEPPQP 303



 Score = 37.4 bits (85), Expect(2) = 3e-92
 Identities = 18/27 (66%), Positives = 20/27 (74%)
 Frame = +1

Query: 1120 KKRSGEKGGSYTQAAGRDSTQSSGVSL 1200
            KKRSGEK G+Y QA+  DS Q S VSL
Sbjct: 332  KKRSGEKRGTYIQASSSDSAQGSDVSL 358


>ref|NP_001099121.1| BOLA class I histocompatibility antigen, alpha chain BL3-6 precursor
            [Bos taurus].
          Length = 360

 Score =  323 bits (827), Expect(2) = 1e-91
 Identities = 164/307 (53%), Positives = 209/307 (68%), Gaps = 4/307 (1%)
 Frame = +2

Query: 128  VLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEEM--KA 301
            +LL S +  L ETRA +HS++YF  A+S    G P +   G +DD  F+R+D++    + 
Sbjct: 7    LLLLSGVLVLTETRAGSHSMRYFSTAVSRPGFGEPRYLEVGYVDDTQFVRFDSDARNPRM 66

Query: 302  KSCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPH 478
            +   +W+++E P Y++  T+      + FR+ L  ++ YYNQ+            + G H
Sbjct: 67   EPRTRWVKQEGPEYWDRNTRNAKGNAQSFRVGLNTLRGYYNQS------------EAGSH 114

Query: 479  TLQFNYGCELQQDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNF 655
            TLQ+  GC +  DGR   G  QYGYDG DYL+L+ D   +TAA   AQ TK+KWEA+  +
Sbjct: 115  TLQWMSGCYVGPDGRLLRGFMQYGYDGRDYLALNEDLRSWTAADTEAQITKRKWEAE-GY 173

Query: 656  IERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKE 835
             E  +NYLE EC+ WLRR++E   ++L R DPPK HVT HP SD  VTLRCWALGFYP+E
Sbjct: 174  AEVQRNYLEGECVEWLRRHMENGKDTLLRADPPKAHVTHHPISDREVTLRCWALGFYPEE 233

Query: 836  ISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTL 1015
            ISLTWQ  G+DQ+QDMELVETRPSGDGTFQKWAALVVP GEEQ YTC VQHEGLQEPLTL
Sbjct: 234  ISLTWQHNGEDQTQDMELVETRPSGDGTFQKWAALVVPSGEEQKYTCRVQHEGLQEPLTL 293

Query: 1016 RWEPPQP 1036
            +WEPPQP
Sbjct: 294  KWEPPQP 300



 Score = 33.9 bits (76), Expect(2) = 1e-91
 Identities = 17/27 (62%), Positives = 18/27 (66%)
 Frame = +1

Query: 1120 KKRSGEKGGSYTQAAGRDSTQSSGVSL 1200
            KK SGEK G+Y QA   DS Q S VSL
Sbjct: 329  KKPSGEKRGTYIQALSSDSAQGSDVSL 355


>ref|XP_002697395.1| PREDICTED: MHC class I heavy chain [Bos taurus].
          Length = 437

 Score =  315 bits (807), Expect(2) = 7e-91
 Identities = 161/310 (51%), Positives = 205/310 (66%), Gaps = 4/310 (1%)
 Frame = +2

Query: 128  VLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNE--EMKA 301
            +LL S +  L ET A +HSL YF   +S    G P F A G +DD  F R+D++    + 
Sbjct: 84   LLLLSEVLVLTETWAGSHSLSYFCTCVSRPGLGEPRFFAVGYVDDTQFARFDSDAPNPRM 143

Query: 302  KSCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPH 478
            +    W+ +E P Y+   T+      +  R  L  ++ +YNQ+            + G H
Sbjct: 144  EPRAPWMEQEGPEYWEAMTRDAKKAQQRLRTGLNTLRGFYNQS------------EAGSH 191

Query: 479  TLQFNYGCELQQDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNF 655
            TLQ+ +GC++  +GR   G WQ  YDGADYL+L+ D   +TAA  +AQ TK+KWE     
Sbjct: 192  TLQWVFGCDVGPEGRLLRGIWQNAYDGADYLALNEDLRSWTAANTVAQITKRKWETSGE- 250

Query: 656  IERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKE 835
             E  +NYLE +C+ WL R+LE   ++L R DPPKTHV  HP SD  VTLRCWALGFYP+E
Sbjct: 251  AEFQRNYLEVKCVQWLLRHLETGKDTLLRADPPKTHVAHHPISDREVTLRCWALGFYPEE 310

Query: 836  ISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTL 1015
            ISLTWQ++G+DQ+QDMELVETRPSGDGTFQKWAALVVP GEEQ YTCHVQHEGLQEPL+L
Sbjct: 311  ISLTWQQDGEDQTQDMELVETRPSGDGTFQKWAALVVPSGEEQRYTCHVQHEGLQEPLSL 370

Query: 1016 RWEPPQPPVP 1045
            RW+PPQP +P
Sbjct: 371  RWKPPQPSIP 380



 Score = 38.9 bits (89), Expect(2) = 7e-91
 Identities = 21/54 (38%), Positives = 24/54 (44%)
 Frame = +1

Query: 1042 PIVGIFXXXXXXXXXXXXXXXXXSWEKKRSGEKGGSYTQAAGRDSTQSSGVSLI 1203
            PI+GI                   W  K SG+ G  YTQAA  DS Q S VSL+
Sbjct: 380  PIMGIIVGLVLLMVTGAVVTGAVIWRNKHSGQTGRGYTQAASSDSAQGSDVSLM 433


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 59,062,228
Number of extensions: 1733936
Number of successful extensions: 8348
Number of sequences better than 1.0e-05: 99
Number of HSP's gapped: 8181
Number of HSP's successfully gapped: 121
Length of query: 478
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 372
Effective length of database: 14,174,046
Effective search space: 5272745112
Effective search space used: 5272745112
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001767
         (1436 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001014767.1| MHC class I DLA-88 [Canis lupus familiaris].      303   1e-86
Alignment   gi|NP_001014401.1| MHC class I DLA-12 [Canis lupus familiaris].      293   1e-83
Alignment   gi|NP_001014400.1| MHC class I DLA-64 [Canis lupus familiaris].      283   1e-80
Alignment   gi|XP_855624.1| PREDICTED: MHC class Ib [Canis familiaris].          271   1e-77
Alignment   gi|NP_001018646.1| MHC class Ib [Canis lupus familiaris].            271   1e-77
Alignment   gi|XP_536867.2| PREDICTED: similar to Zinc-alpha-2-glycoprotein...   191   1e-48
Alignment   gi|XP_533618.2| PREDICTED: similar to IgG receptor FcRn large s...   115   1e-25
Alignment   gi|XP_849737.1| PREDICTED: similar to HLA class II histocompati...    75   2e-13
Alignment   gi|NP_001014403.1| major histocompatibility complex, class II, ...    70   7e-12
Alignment   gi|XP_850803.1| PREDICTED: similar to HLA class II histocompati...    68   2e-11

>ref|NP_001014767.1| MHC class I DLA-88 [Canis lupus familiaris].
          Length = 361

 Score =  303 bits (777), Expect(2) = 1e-86
 Identities = 154/306 (50%), Positives = 204/306 (66%), Gaps = 4/306 (1%)
 Frame = +2

Query: 122  APVLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEEM-- 295
            A ++L S   ++  TRA +HSL+YFY ++S    G P F A G +DD  F+R+D++    
Sbjct: 8    ALLVLLSAALAVTLTRAGSHSLRYFYTSVSRPGRGDPRFIAVGYVDDTQFVRFDSDAATG 67

Query: 296  KAKSCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTG 472
            + +    W+ +E P Y++ ET+      + +R++L  ++ YYNQ+            + G
Sbjct: 68   RMEPRAPWMEQEGPEYWDRETRTVKETAQRYRVDLDTLRGYYNQS------------EAG 115

Query: 473  PHTLQFNYGCELQQDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADR 649
             HT Q  YGC+L   GR   G+ Q  YDGADY++L+ D   +TAA   AQ T++KWEA  
Sbjct: 116  SHTRQTMYGCDLGPGGRLLRGYSQDAYDGADYIALNEDLRSWTAADTAAQITRRKWEA-A 174

Query: 650  NFIERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYP 829
               E D+NYLE  C+ WLRRYLE   E+L R +PP T VTRHP SD  VTLRCWALGFYP
Sbjct: 175  GTAEHDRNYLETTCVEWLRRYLEMGKETLLRAEPPSTRVTRHPISDHEVTLRCWALGFYP 234

Query: 830  KEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPL 1009
             EI+LTWQR+G+DQ+QD E+V+TRP+GDGTFQKWAA+VVP G+EQ YTCHVQHEGL EP+
Sbjct: 235  AEITLTWQRDGEDQTQDTEVVDTRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLAEPV 294

Query: 1010 TLRWEP 1027
            T RWEP
Sbjct: 295  TRRWEP 300



 Score = 36.6 bits (83), Expect(2) = 1e-86
 Identities = 20/35 (57%), Positives = 22/35 (62%)
 Frame = +1

Query: 1114 WEKKRSGEKGGSYTQAAGRDSTQSSGVSLIKDPRV 1218
            W K+RSG KG  Y+ AA  DS Q S VSL   PRV
Sbjct: 328  WRKQRSGGKGPGYSHAARDDSAQGSDVSLTA-PRV 361


>ref|NP_001014401.1| MHC class I DLA-12 [Canis lupus familiaris].
          Length = 358

 Score =  293 bits (751), Expect(2) = 1e-83
 Identities = 151/305 (49%), Positives = 202/305 (66%), Gaps = 6/305 (1%)
 Frame = +2

Query: 131  LLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEEM--KAK 304
            LL S   ++  TRA +HSL+YFY ++S    G P F A G +DD  F+R+D++    + +
Sbjct: 8    LLLSGALAVTLTRAGSHSLRYFYTSVSRPGRGDPRFIAVGYVDDTQFVRFDSDAATGRME 67

Query: 305  SCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPHT 481
                W+ +E P Y++ +T+      + FR++L  ++ YYNQ+            + G HT
Sbjct: 68   PRAPWVEQEGPEYWDPQTRTIKETARTFRVDLDTLRGYYNQS------------EAGSHT 115

Query: 482  LQFNYGCELQQDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEA--DRN 652
             Q+ +GC+L   GR   G+ Q  YDGADY++L+ D   +TAA   AQ T++K EA  D  
Sbjct: 116  FQWMFGCDLGPGGRLLRGYSQDAYDGADYIALNEDLRSWTAADAAAQITRRKREAAGDAG 175

Query: 653  FIERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPK 832
             +   +NYLE  C+ WLRRYLE   E+L R +PP T VTRHP SD  VTLRCWALGFYP 
Sbjct: 176  HL---RNYLETTCVEWLRRYLEMGKETLLRAEPPSTRVTRHPVSDHEVTLRCWALGFYPA 232

Query: 833  EISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLT 1012
            EI+LTWQR+G+DQ+QD E+V+TRP+GDGTFQKWAA+VVP G+EQ YTCHVQHEGL EP+T
Sbjct: 233  EITLTWQRDGEDQTQDTEVVDTRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLVEPVT 292

Query: 1013 LRWEP 1027
             RWEP
Sbjct: 293  RRWEP 297



 Score = 36.6 bits (83), Expect(2) = 1e-83
 Identities = 20/35 (57%), Positives = 22/35 (62%)
 Frame = +1

Query: 1114 WEKKRSGEKGGSYTQAAGRDSTQSSGVSLIKDPRV 1218
            W K+RSG KG  Y+ AA  DS Q S VSL   PRV
Sbjct: 325  WRKQRSGGKGPGYSHAARDDSAQGSDVSLTA-PRV 358


>ref|NP_001014400.1| MHC class I DLA-64 [Canis lupus familiaris].
          Length = 361

 Score =  283 bits (724), Expect(2) = 1e-80
 Identities = 145/306 (47%), Positives = 202/306 (66%), Gaps = 4/306 (1%)
 Frame = +2

Query: 122  APVLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEEM-- 295
            A ++L S   ++  TRA +HSL++F+ A+S    G P + + G +DD  F+R++++    
Sbjct: 8    ALLVLLSAALAVTLTRAGSHSLRFFHTAVSRPGRGDPLYISVGYVDDTQFLRFNSDAASP 67

Query: 296  KAKSCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTG 472
            K +   +W+ +E P ++ ++T+I     +  R NL+    YYNQ+            + G
Sbjct: 68   KVEPRARWMEQEGPEFWEEQTEIAKVHAQTSRSNLQTALGYYNQS------------EAG 115

Query: 473  PHTLQFNYGCELQQDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADR 649
             HT Q+  GC++  DGR   G+ Q+ YDGADYL+L  D   +TAA   AQ T++KWEA  
Sbjct: 116  SHTFQWTSGCDVGPDGRLLRGYEQFAYDGADYLALDEDLRSWTAADAAAQITRRKWEA-A 174

Query: 650  NFIERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYP 829
               +  + YL+ EC+  L +YLE   E+L  TDPPK ++TRHP SD  VTLRCWALGFYP
Sbjct: 175  GAAQYYRVYLQGECVQSLLKYLERGKETLQLTDPPKIYLTRHPISDHEVTLRCWALGFYP 234

Query: 830  KEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPL 1009
             EI+LTWQR+G+DQ+QD E+V+TRP+GDGTFQKWAA+VVP G+EQ YTCHVQHEGL EP+
Sbjct: 235  AEITLTWQRDGEDQTQDTEVVDTRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLAEPV 294

Query: 1010 TLRWEP 1027
            T RWEP
Sbjct: 295  TRRWEP 300



 Score = 36.6 bits (83), Expect(2) = 1e-80
 Identities = 20/35 (57%), Positives = 22/35 (62%)
 Frame = +1

Query: 1114 WEKKRSGEKGGSYTQAAGRDSTQSSGVSLIKDPRV 1218
            W K+RSG KG  Y+ AA  DS Q S VSL   PRV
Sbjct: 328  WRKQRSGGKGPGYSHAARDDSAQGSDVSLTA-PRV 361


>ref|XP_855624.1| PREDICTED: MHC class Ib [Canis familiaris].
          Length = 381

 Score =  271 bits (693), Expect(2) = 1e-77
 Identities = 145/312 (46%), Positives = 194/312 (62%), Gaps = 6/312 (1%)
 Frame = +2

Query: 128  VLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEE--MKA 301
            +LL S    L +T A +HSL++    +S    G P   A   +DD PF R+++E    + 
Sbjct: 15   LLLLSGTLGLAQTSAGSHSLRFLNTVVSRPGHGEPRHWAVAYVDDTPFERFNSEREGRRP 74

Query: 302  KSCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNV-QRYYNQTMENGLNKALEHKQTGP 475
            +  V+WL +E P Y+ + T    +  ++ R  L  V Q Y NQ+            +TG 
Sbjct: 75   EPLVRWLEQEGPEYWEERTLNSRTCTQVLRRTLNEVSQDYSNQS------------RTGS 122

Query: 476  HTLQFNYGCELQQDGR-TSGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRN 652
            HT Q   GC++  DGR   G+ ++ YDG DY++L  D   +     +AQ T++KW+A   
Sbjct: 123  HTFQTITGCDVGPDGRFLRGYQRHAYDGLDYITLSEDLRSWIVEDPVAQITRRKWDA-AT 181

Query: 653  FIERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPK 832
              E  KN+LE  C+ WLRR+LE   E+L R DPPKT VTR P S+  VTL+CWALGFYP 
Sbjct: 182  VAENRKNFLEGRCLEWLRRHLENGRETLQRADPPKTSVTRRPISEHEVTLKCWALGFYPA 241

Query: 833  EISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLT 1012
            EI+LTWQR+G+DQ+QD ELVETRP GDGTFQKWAA+VVP GEEQ YTCH+ H+ L +P+T
Sbjct: 242  EITLTWQRDGEDQTQDTELVETRPGGDGTFQKWAAVVVPSGEEQRYTCHILHKSLPKPIT 301

Query: 1013 LRWE-PPQPPVP 1045
            LRWE PPQ  +P
Sbjct: 302  LRWEPPPQSTIP 313



 Score = 38.9 bits (89), Expect(2) = 1e-77
 Identities = 23/45 (51%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = +1

Query: 1114 WEKKRSGEKGGSYTQAA---GRDSTQSSGVSLIKDPRV*DSCLVG 1239
            W KK SG KGGSY+QA    G  S Q S +S++  P    SCLVG
Sbjct: 337  WRKKHSGRKGGSYSQAENKYGGSSAQDSQMSVMA-PNEQASCLVG 380


>ref|NP_001018646.1| MHC class Ib [Canis lupus familiaris].
          Length = 381

 Score =  271 bits (693), Expect(2) = 1e-77
 Identities = 145/312 (46%), Positives = 194/312 (62%), Gaps = 6/312 (1%)
 Frame = +2

Query: 128  VLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEE--MKA 301
            +LL S    L +T A +HSL++    +S    G P   A   +DD PF R+++E    + 
Sbjct: 15   LLLLSGTLGLAQTSAGSHSLRFLNTVVSRPGHGEPRHWAVAYVDDTPFERFNSEREGRRP 74

Query: 302  KSCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNV-QRYYNQTMENGLNKALEHKQTGP 475
            +  V+WL +E P Y+ + T    +  ++ R  L  V Q Y NQ+            +TG 
Sbjct: 75   EPLVRWLEQEGPEYWEERTLNSRTCTQVLRRTLNEVSQDYSNQS------------RTGS 122

Query: 476  HTLQFNYGCELQQDGR-TSGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRN 652
            HT Q   GC++  DGR   G+ ++ YDG DY++L  D   +     +AQ T++KW+A   
Sbjct: 123  HTFQTITGCDVGPDGRFLRGYQRHAYDGLDYITLSEDLRSWIVEDPVAQITRRKWDA-AT 181

Query: 653  FIERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPK 832
              E  KN+LE  C+ WLRR+LE   E+L R DPPKT VTR P S+  VTL+CWALGFYP 
Sbjct: 182  VAENRKNFLEGRCLEWLRRHLENGRETLQRADPPKTSVTRRPISEHEVTLKCWALGFYPA 241

Query: 833  EISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLT 1012
            EI+LTWQR+G+DQ+QD ELVETRP GDGTFQKWAA+VVP GEEQ YTCH+ H+ L +P+T
Sbjct: 242  EITLTWQRDGEDQTQDTELVETRPGGDGTFQKWAAVVVPSGEEQRYTCHILHKSLTKPIT 301

Query: 1013 LRWE-PPQPPVP 1045
            LRWE PPQ  +P
Sbjct: 302  LRWEPPPQSTIP 313



 Score = 38.9 bits (89), Expect(2) = 1e-77
 Identities = 23/45 (51%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = +1

Query: 1114 WEKKRSGEKGGSYTQAA---GRDSTQSSGVSLIKDPRV*DSCLVG 1239
            W KK SG KGGSY+QA    G  S Q S +S++  P    SCLVG
Sbjct: 337  WRKKHSGRKGGSYSQAENKYGGSSAQDSQMSVMA-PNEQASCLVG 380


>ref|XP_536867.2| PREDICTED: similar to Zinc-alpha-2-glycoprotein precursor
            (Zn-alpha-2-glycoprotein) (Zn-alpha-2-GP) [Canis
            familiaris].
          Length = 315

 Score =  191 bits (485), Expect = 1e-48
 Identities = 102/298 (34%), Positives = 157/298 (52%), Gaps = 3/298 (1%)
 Frame = +2

Query: 158  QETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEEMKAKSCVQWLREEP- 334
            QET+   +SL +FY  +S  + G P+F A   ++DQ F  YD+E  KA     W + E  
Sbjct: 21   QETQGGPYSLSFFYTGLSRPSDGFPSFQATAYLNDQDFFHYDSETGKAIPRYPWSQMEGI 80

Query: 335  SYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPHTLQFNYGCELQQ 514
              +  E+K+  +R  IF + L+++  YY               + G HT Q  +GCELQ 
Sbjct: 81   EDWEKESKLQKAREDIFMVTLKDIMEYYKD-------------KEGSHTFQGMFGCELQN 127

Query: 515  DGRTSGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNFIERDKNYLEKECI 694
            +  +   W+Y YDG +++  + +   +      A  TK+KWEA+  +++R K YLE+EC 
Sbjct: 128  NKNSGAFWRYAYDGRNFIEFNKEIPAWVPQDPAALNTKKKWEAEEVYVQRAKAYLEEECP 187

Query: 695  VWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQS 874
            V L+RYLE+    L+R +PP   +T H + +   TL+CW  GFYP+EI L W  +  D  
Sbjct: 188  VMLQRYLEYGKTYLDRQEPPSVSITSHGTPEGIQTLKCWVSGFYPQEIDLHW-IQADDTQ 246

Query: 875  QDMELVETRPSGDGTFQKWAALVVPPGE--EQSYTCHVQHEGLQEPLTLRWEPPQPPV 1042
            +        PSG+ T+Q W  +   P +    SY+C V+H  L +PLT+ W+  Q  V
Sbjct: 247  ETKSGGALLPSGNNTYQAWVVMSASPQDLASFSYSCLVKHSSLSQPLTVLWDKRQGAV 304


>ref|XP_533618.2| PREDICTED: similar to IgG receptor FcRn large subunit p51 precursor
            (FcRn) (Neonatal Fc receptor) (IgG Fc fragment receptor
            transporter, alpha chain) [Canis familiaris].
          Length = 354

 Score =  115 bits (287), Expect = 1e-25
 Identities = 83/295 (28%), Positives = 130/295 (44%), Gaps = 3/295 (1%)
 Frame = +2

Query: 155  LQETRARTH-SLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEEMKAKSCVQWLREE 331
            L   RA +H SL Y   A+S   PG PAF A G +  Q ++ Y+N   +A+    W+ E 
Sbjct: 18   LPTLRADSHLSLLYHLTAVSAPPPGTPAFWASGWLGPQQYLSYNNLRAQAEPYGAWVWEN 77

Query: 332  PS--YFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPHTLQFNYGCE 505
                Y+  ET    ++  +F   L+         + +G          GP+TLQ   GCE
Sbjct: 78   QVSWYWEKETTDLRTKEGLFLEALK--------ALGDG----------GPYTLQGLLGCE 119

Query: 506  LQQDGRTSGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNFIERDKNYLEK 685
            L  D  +    ++  +G D+++       +       +   ++W      + +++ +L  
Sbjct: 120  LGPDNTSVPVAKFALNGEDFMTFDPKLGTWNGDWPETETVSKRWMQQAGAVSKERTFLLY 179

Query: 686  ECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQ 865
             C   L  +LE    +L   +PP   +   P S     L C A  FYP E+ L + R G 
Sbjct: 180  SCPQRLLGHLERGRGNLEWKEPPSMRLKARPGSPGFSVLTCSAFSFYPPELQLRFLRNGL 239

Query: 866  DQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWEPP 1030
                     +  P+GDG+F  W++L V  G+E  Y C VQH GL +PLT+  E P
Sbjct: 240  AAGSGEG--DFGPNGDGSFHAWSSLTVKSGDEHHYRCLVQHAGLPQPLTVELESP 292


>ref|XP_849737.1| PREDICTED: similar to HLA class II histocompatibility antigen, DM
            beta chain precursor (MHC class II antigen DMB) [Canis
            familiaris].
          Length = 263

 Score = 74.7 bits (182), Expect = 2e-13
 Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 3/156 (1%)
 Frame = +2

Query: 584  PLQYTAATFIAQYTKQKWEADRNFIERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTH 763
            P ++     +A Y            +R  N L+ +C    +    F G   +RT PP   
Sbjct: 63   PYEFGTLNVLANYLSDYLNQQEYLHQRLSNGLQ-DCATHTQ---SFWGSLTHRTRPPTVQ 118

Query: 764  VTRHP--SSDLGVTLRCWALGFYPKEISLTWQREGQD-QSQDMELVETRPSGDGTFQKWA 934
            V +    ++   V L C+  GFYP +++++W++ GQ   S    L   +P+GD T+Q  +
Sbjct: 119  VAKSTPFNTKESVMLACYVWGFYPADVTISWRKNGQPVPSHSSALNMAQPNGDWTYQTVS 178

Query: 935  ALVVPPGEEQSYTCHVQHEGLQEPLTLRWEPPQPPV 1042
             L   P  E +YTC V+H G  EP+   W P   P+
Sbjct: 179  HLATTPSYEDTYTCVVEHIGAPEPVCEDWTPGLSPM 214


>ref|NP_001014403.1| major histocompatibility complex, class II, DQ beta 1 [Canis lupus
            familiaris].
          Length = 269

 Score = 69.7 bits (169), Expect = 7e-12
 Identities = 51/170 (30%), Positives = 75/170 (44%), Gaps = 9/170 (5%)
 Frame = +2

Query: 539  QYGYDGADYLSLHLDPLQYTAATFIAQ-----YTKQKWEADRNFIERDK----NYLEKEC 691
            +Y Y+  +++    D  ++ A T + +     + +QK E DR   E D     NY  +E 
Sbjct: 61   KYIYNREEFVRFDSDVGEFRAVTELGRPDAEYWNRQKDEMDRVRAELDTVCRHNYGREEL 120

Query: 692  IVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQ 871
                RR      E      P KT V  H +      L C    FYP +I + W R  Q+Q
Sbjct: 121  TTLQRRV-----EPTVTIFPSKTEVLNHHN-----LLVCSVTDFYPGQIKVRWFRNDQEQ 170

Query: 872  SQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRW 1021
            +  +       +GD TFQ    L + P     YTCHV+H  LQ P+T++W
Sbjct: 171  TAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHASLQSPITVQW 220


>ref|XP_850803.1| PREDICTED: similar to HLA class II histocompatibility antigen, DO
            alpha chain precursor (MHC class II antigen DOA) (MHC DZ
            alpha) (MHC DN-alpha) isoform 11 [Canis familiaris].
          Length = 227

 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 56/192 (29%), Positives = 80/192 (41%), Gaps = 7/192 (3%)
 Frame = +2

Query: 491  NYGCELQQDGRTSGHWQYGYDGADYLSLHLDPLQ--YTAATF--IAQYTKQKWEADRNFI 658
            +YG    Q   +SG + + +DG    S+ L   Q  +    F  +A +  Q   A    I
Sbjct: 3    SYGPAFYQSYGSSGQFAHEFDGEQLFSVELKKRQAVWRLPEFGNLAHFDPQNGLASIAVI 62

Query: 659  ERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGV--TLRCWALGFYPK 832
            +   + L +       R     G  L+   PP+  V      +LG    L C     +P 
Sbjct: 63   KAHLDVLVERS----NRTRAINGTHLSSPLPPRVAVLPKFRVELGQPNVLICIVDNIFPP 118

Query: 833  EISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLT 1012
             I++TW R GQ  S+ +         D  F+K+  L   P  E  Y C V+H GL+EPL 
Sbjct: 119  VINITWLRNGQIISEGVAQTSFYSQPDHLFRKFCYLTFVPSAEDMYDCKVEHWGLEEPLL 178

Query: 1013 LRWEPPQP-PVP 1045
              WEP  P PVP
Sbjct: 179  RHWEPQVPIPVP 190


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 61,571,131
Number of extensions: 1783383
Number of successful extensions: 8333
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 8258
Number of HSP's successfully gapped: 29
Length of query: 478
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 371
Effective length of database: 15,307,552
Effective search space: 5679101792
Effective search space used: 5679101792
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001767
         (1436 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_005505.2| major histocompatibility complex, class I, B pr...   318   6e-91
Alignment   gi|NP_002107.3| HLA class I histocompatibility antigen, A-1 alp...   308   2e-89
Alignment   gi|NP_001229687.1| HLA class I histocompatibility antigen, A-1 ...   305   1e-88
Alignment   gi|NP_001229971.1| HLA class I histocompatibility antigen, Cw-1...   305   4e-85
Alignment   gi|NP_005507.3| HLA class I histocompatibility antigen, alpha c...   298   2e-84
Alignment   gi|NP_002108.4| HLA class I histocompatibility antigen, Cw-1 al...   301   5e-84
Alignment   gi|NP_002118.1| HLA class I histocompatibility antigen, alpha c...   300   3e-81
Alignment   gi|NP_001091949.1| HLA class I histocompatibility antigen, alph...   290   6e-79
Alignment   gi|NP_061823.2| HLA class I histocompatibility antigen, alpha c...   290   6e-79
Alignment   gi|NP_001522.1| major histocompatibility complex class I-relate...   214   1e-55

>ref|NP_005505.2| major histocompatibility complex, class I, B precursor [Homo
            sapiens].
          Length = 362

 Score =  318 bits (815), Expect(2) = 6e-91
 Identities = 163/311 (52%), Positives = 210/311 (67%), Gaps = 5/311 (1%)
 Frame = +2

Query: 128  VLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEEMKAKS 307
            +LL S   +L ET A +HS++YFY ++S    G P F + G +DD  F+R+D++    + 
Sbjct: 10   LLLLSAALALTETWAGSHSMRYFYTSVSRPGRGEPRFISVGYVDDTQFVRFDSDAASPRE 69

Query: 308  --CVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPH 478
                 W+ +E P Y++  T+I+ ++ +  R +LRN++ YYNQ+            + G H
Sbjct: 70   EPRAPWIEQEGPEYWDRNTQIYKAQAQTDRESLRNLRGYYNQS------------EAGSH 117

Query: 479  TLQFNYGCELQQDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNF 655
            TLQ  YGC++  DGR   GH QY YDG DY++L+ D   +TAA   AQ T++KWEA R  
Sbjct: 118  TLQSMYGCDVGPDGRLLRGHDQYAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAARE- 176

Query: 656  IERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKE 835
             E+ + YLE EC+ WLRRYLE   + L R DPPKTHVT HP SD   TLRCWALGFYP E
Sbjct: 177  AEQRRAYLEGECVEWLRRYLENGKDKLERADPPKTHVTHHPISDHEATLRCWALGFYPAE 236

Query: 836  ISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTL 1015
            I+LTWQR+G+DQ+QD ELVETRP+GD TFQKWAA+VVP GEEQ YTCHVQHEGL +PLTL
Sbjct: 237  ITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTL 296

Query: 1016 RWEP-PQPPVP 1045
            RWEP  Q  VP
Sbjct: 297  RWEPSSQSTVP 307



 Score = 36.2 bits (82), Expect(2) = 6e-91
 Identities = 18/27 (66%), Positives = 20/27 (74%)
 Frame = +1

Query: 1120 KKRSGEKGGSYTQAAGRDSTQSSGVSL 1200
            +K SG KGGSY+QAA  DS Q S VSL
Sbjct: 334  RKSSGGKGGSYSQAACSDSAQGSDVSL 360


>ref|NP_002107.3| HLA class I histocompatibility antigen, A-1 alpha chain precursor
            [Homo sapiens].
          Length = 365

 Score =  308 bits (789), Expect(2) = 2e-89
 Identities = 156/311 (50%), Positives = 209/311 (67%), Gaps = 5/311 (1%)
 Frame = +2

Query: 128  VLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNE--EMKA 301
            +LL S   +L +T A +HS++YF+ ++S    G P F A G +DD  F+R+D++    + 
Sbjct: 10   LLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRM 69

Query: 302  KSCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPH 478
            +    W+ +E P Y++ ET+   ++ +  R++L  ++ YYNQ+            + G H
Sbjct: 70   EPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQS------------EAGSH 117

Query: 479  TLQFNYGCELQQDGR-TSGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNF 655
            T+Q  YGC++  DGR   G+ Q  YDG DY++L+ D   +TAA   AQ TK+KWEA    
Sbjct: 118  TIQIMYGCDVGSDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHE- 176

Query: 656  IERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKE 835
             E+ + YL+  C+ WLRRYLE   E+L RTDPPKTH+T HP SD   TLRCWALGFYP E
Sbjct: 177  AEQLRAYLDGTCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAE 236

Query: 836  ISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTL 1015
            I+LTWQR+G+DQ+QD ELVETRP+GDGTFQKWAA+VVP GEEQ YTCHVQHEGL +PLTL
Sbjct: 237  ITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTL 296

Query: 1016 RWE-PPQPPVP 1045
            RWE   QP +P
Sbjct: 297  RWELSSQPTIP 307



 Score = 41.2 bits (95), Expect(2) = 2e-89
 Identities = 19/29 (65%), Positives = 20/29 (68%)
 Frame = +1

Query: 1114 WEKKRSGEKGGSYTQAAGRDSTQSSGVSL 1200
            W +K S  KGGSYTQAA  DS Q S VSL
Sbjct: 332  WRRKSSDRKGGSYTQAASSDSAQGSDVSL 360


>ref|NP_001229687.1| HLA class I histocompatibility antigen, A-1 alpha chain precursor
            [Homo sapiens].
          Length = 365

 Score =  305 bits (782), Expect(2) = 1e-88
 Identities = 158/311 (50%), Positives = 207/311 (66%), Gaps = 5/311 (1%)
 Frame = +2

Query: 128  VLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNE--EMKA 301
            +LL S   +L +T A +HS++YF+ ++S    G P F A G +DD  F+R+D++    K 
Sbjct: 10   LLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQKM 69

Query: 302  KSCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPH 478
            +    W+ +E P Y++ ET+   +  +  R NL  ++ YYNQ+            + G H
Sbjct: 70   EPRAPWIEQEGPEYWDQETRNMKAHSQTDRANLGTLRGYYNQS------------EDGSH 117

Query: 479  TLQFNYGCELQQDGR-TSGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNF 655
            T+Q  YGC++  DGR   G+ Q  YDG DY++L+ D   +TAA   AQ TK+KWEA  + 
Sbjct: 118  TIQIMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAV-HA 176

Query: 656  IERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKE 835
             E+ + YLE  C+  LRRYLE   E+L RTDPPKTH+T HP SD   TLRCWALGFYP E
Sbjct: 177  AEQRRVYLEGRCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAE 236

Query: 836  ISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTL 1015
            I+LTWQR+G+DQ+QD ELVETRP+GDGTFQKWAA+VVP GEEQ YTCHVQHEGL +PLTL
Sbjct: 237  ITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTL 296

Query: 1016 RWE-PPQPPVP 1045
            RWE   QP +P
Sbjct: 297  RWELSSQPTIP 307



 Score = 41.2 bits (95), Expect(2) = 1e-88
 Identities = 19/29 (65%), Positives = 20/29 (68%)
 Frame = +1

Query: 1114 WEKKRSGEKGGSYTQAAGRDSTQSSGVSL 1200
            W +K S  KGGSYTQAA  DS Q S VSL
Sbjct: 332  WRRKSSDRKGGSYTQAASSDSAQGSDVSL 360


>ref|NP_001229971.1| HLA class I histocompatibility antigen, Cw-1 alpha chain precursor
            [Homo sapiens].
          Length = 366

 Score =  305 bits (780), Expect(2) = 4e-85
 Identities = 161/313 (51%), Positives = 211/313 (67%), Gaps = 5/313 (1%)
 Frame = +2

Query: 122  APVLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEEM-- 295
            A +LL S   +L ET A +HS++YF  A+S    G P F + G +DD  F+R+D++    
Sbjct: 8    ALLLLLSGGLALTETWACSHSMRYFDTAVSRPGRGEPRFISVGYVDDTQFVRFDSDAASP 67

Query: 296  KAKSCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTG 472
            + +    W+ +E P Y++ ET+ +  + +  R++LRN++ YYNQ+            + G
Sbjct: 68   RGEPRAPWVEQEGPEYWDRETQNYKRQAQADRVSLRNLRGYYNQS------------EDG 115

Query: 473  PHTLQFNYGCELQQDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADR 649
             HTLQ  YGC+L  DGR   G+ Q  YDG DY++L+ D   +TAA   AQ T++K EA R
Sbjct: 116  SHTLQRMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKLEAAR 175

Query: 650  NFIERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYP 829
               E+ + YLE  C+ WLRRYLE   E+L R +PPKTHVT HP SD   TLRCWALGFYP
Sbjct: 176  A-AEQLRAYLEGTCVEWLRRYLENGKETLQRAEPPKTHVTHHPLSDHEATLRCWALGFYP 234

Query: 830  KEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPL 1009
             EI+LTWQR+G+DQ+QD ELVETRP+GDGTFQKWAA+VVP G+EQ YTCH+QHEGLQEPL
Sbjct: 235  AEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHMQHEGLQEPL 294

Query: 1010 TLRWEP-PQPPVP 1045
            TL WEP  QP +P
Sbjct: 295  TLSWEPSSQPTIP 307



 Score = 30.0 bits (66), Expect(2) = 4e-85
 Identities = 16/28 (57%), Positives = 19/28 (67%)
 Frame = +1

Query: 1120 KKRSGEKGGSYTQAAGRDSTQSSGVSLI 1203
            +K SG KGGS +QAA  +S Q S  SLI
Sbjct: 335  RKSSGGKGGSCSQAACSNSAQGSDESLI 362


>ref|NP_005507.3| HLA class I histocompatibility antigen, alpha chain E precursor [Homo
            sapiens].
          Length = 358

 Score =  298 bits (764), Expect(2) = 2e-84
 Identities = 154/311 (49%), Positives = 205/311 (65%), Gaps = 5/311 (1%)
 Frame = +2

Query: 128  VLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEEMKAKS 307
            +LL S   +L +T A +HSL+YF+ ++S    G P F + G +DD  F+R+DN+    + 
Sbjct: 7    LLLLSEALALTQTWAGSHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDNDAASPRM 66

Query: 308  CVQ--WLREEPS-YFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPH 478
              +  W+ +E S Y++ ET+      +IFR+NLR ++ YYNQ+            + G H
Sbjct: 67   VPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTLRGYYNQS------------EAGSH 114

Query: 479  TLQFNYGCELQQDGR-TSGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNF 655
            TLQ+ +GCEL  DGR   G+ Q+ YDG DYL+L+ D   +TA    AQ ++QK   D + 
Sbjct: 115  TLQWMHGCELGPDGRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQK-SNDASE 173

Query: 656  IERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKE 835
             E  + YLE  C+ WL +YLE   E+L   +PPKTHVT HP SD   TLRCWALGFYP E
Sbjct: 174  AEHQRAYLEDTCVEWLHKYLEKGKETLLHLEPPKTHVTHHPISDHEATLRCWALGFYPAE 233

Query: 836  ISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTL 1015
            I+LTWQ++G+  +QD ELVETRP+GDGTFQKWAA+VVP GEEQ YTCHVQHEGL EP+TL
Sbjct: 234  ITLTWQQDGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPVTL 293

Query: 1016 RWEP-PQPPVP 1045
            RW+P  QP +P
Sbjct: 294  RWKPASQPTIP 304



 Score = 34.3 bits (77), Expect(2) = 2e-84
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = +1

Query: 1114 WEKKRSGEKGGSYTQAAGRDSTQSS 1188
            W KK SG KGGSY++A   DS Q S
Sbjct: 329  WRKKSSGGKGGSYSKAEWSDSAQGS 353


>ref|NP_002108.4| HLA class I histocompatibility antigen, Cw-1 alpha chain precursor
            [Homo sapiens].
          Length = 366

 Score =  301 bits (771), Expect(2) = 5e-84
 Identities = 160/313 (51%), Positives = 210/313 (67%), Gaps = 5/313 (1%)
 Frame = +2

Query: 122  APVLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEEM-- 295
            A +LL S   +L ET A +HS++YF  A+S    G P F + G +DD  F+R+D++    
Sbjct: 8    ALLLLLSGGLALTETWACSHSMRYFDTAVSRPGRGEPRFISVGYVDDTQFVRFDSDAASP 67

Query: 296  KAKSCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTG 472
            + +    W+ +E P Y++ ET+ +  + +  R++LRN++ YYNQ+            + G
Sbjct: 68   RGEPRAPWVEQEGPEYWDRETQKYKRQAQADRVSLRNLRGYYNQS------------EDG 115

Query: 473  PHTLQFNYGCELQQDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADR 649
             HTLQ   GC+L  DGR   G+ Q  YDG DY++L+ D   +TAA   AQ T++K EA R
Sbjct: 116  SHTLQRMSGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKLEAAR 175

Query: 650  NFIERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYP 829
               E+ + YLE  C+ WLRRYLE   E+L R +PPKTHVT HP SD   TLRCWALGFYP
Sbjct: 176  A-AEQLRAYLEGTCVEWLRRYLENGKETLQRAEPPKTHVTHHPLSDHEATLRCWALGFYP 234

Query: 830  KEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPL 1009
             EI+LTWQR+G+DQ+QD ELVETRP+GDGTFQKWAA+VVP G+EQ YTCH+QHEGLQEPL
Sbjct: 235  AEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHMQHEGLQEPL 294

Query: 1010 TLRWEP-PQPPVP 1045
            TL WEP  QP +P
Sbjct: 295  TLSWEPSSQPTIP 307



 Score = 30.0 bits (66), Expect(2) = 5e-84
 Identities = 16/28 (57%), Positives = 19/28 (67%)
 Frame = +1

Query: 1120 KKRSGEKGGSYTQAAGRDSTQSSGVSLI 1203
            +K SG KGGS +QAA  +S Q S  SLI
Sbjct: 335  RKSSGGKGGSCSQAACSNSAQGSDESLI 362


>ref|NP_002118.1| HLA class I histocompatibility antigen, alpha chain G precursor [Homo
            sapiens].
          Length = 338

 Score =  300 bits (767), Expect = 3e-81
 Identities = 156/307 (50%), Positives = 199/307 (64%), Gaps = 4/307 (1%)
 Frame = +2

Query: 131  LLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEEM--KAK 304
            LL S   +L ET A +HS++YF  A+S    G P F A G +DD  F+R+D++    + +
Sbjct: 11   LLLSGALTLTETWAGSHSMRYFSAAVSRPGRGEPRFIAMGYVDDTQFVRFDSDSACPRME 70

Query: 305  SCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPHT 481
                W+ +E P Y+ +ET+   +  +  R+NL+ ++ YYNQ+            +   HT
Sbjct: 71   PRAPWVEQEGPEYWEEETRNTKAHAQTDRMNLQTLRGYYNQS------------EASSHT 118

Query: 482  LQFNYGCELQQDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNFI 658
            LQ+  GC+L  DGR   G+ QY YDG DYL+L+ D   +TAA   AQ +K+K EA  N  
Sbjct: 119  LQWMIGCDLGSDGRLLRGYEQYAYDGKDYLALNEDLRSWTAADTAAQISKRKCEA-ANVA 177

Query: 659  ERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKEI 838
            E+ + YLE  C+ WL RYLE   E L R DPPKTHVT HP  D   TLRCWALGFYP EI
Sbjct: 178  EQRRAYLEGTCVEWLHRYLENGKEMLQRADPPKTHVTHHPVFDYEATLRCWALGFYPAEI 237

Query: 839  SLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLR 1018
             LTWQR+G+DQ+QD+ELVETRP+GDGTFQKWAA+VVP GEEQ YTCHVQHEGL EPL LR
Sbjct: 238  ILTWQRDGEDQTQDVELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLMLR 297

Query: 1019 WEPPQPP 1039
            W+    P
Sbjct: 298  WKQSSLP 304


>ref|NP_001091949.1| HLA class I histocompatibility antigen, alpha chain F isoform 1
            precursor [Homo sapiens].
          Length = 442

 Score =  290 bits (741), Expect(2) = 6e-79
 Identities = 154/311 (49%), Positives = 202/311 (64%), Gaps = 5/311 (1%)
 Frame = +2

Query: 128  VLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEEM--KA 301
            +LL S   +L +T A +HSL+YF  A+S    G P + A   +DD  F+R+D++    + 
Sbjct: 7    LLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIPRM 66

Query: 302  KSCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPH 478
            +    W+ +E P Y+   T    +  +  R+ LRN+ R YNQ+            + G H
Sbjct: 67   EPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQS------------EAGSH 114

Query: 479  TLQFNYGCELQQDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNF 655
            TLQ   GC++  DGR   G+ Q+ YDG DY+SL+ D   +TAA  +AQ T++ +EA+  +
Sbjct: 115  TLQGMNGCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEE-Y 173

Query: 656  IERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKE 835
             E  + YLE EC+  LRRYLE   E+L R DPPK HV  HP SD   TLRCWALGFYP E
Sbjct: 174  AEEFRTYLEGECLELLRRYLENGKETLQRADPPKAHVAHHPISDHEATLRCWALGFYPAE 233

Query: 836  ISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTL 1015
            I+LTWQR+G++Q+QD ELVETRP+GDGTFQKWAA+VVPPGEEQ YTCHVQHEGL +PL L
Sbjct: 234  ITLTWQRDGEEQTQDTELVETRPAGDGTFQKWAAVVVPPGEEQRYTCHVQHEGLPQPLIL 293

Query: 1016 RWE-PPQPPVP 1045
            RWE  PQP +P
Sbjct: 294  RWEQSPQPTIP 304



 Score = 24.6 bits (52), Expect(2) = 6e-79
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 1114 WEKKRSGEKGGSYTQAA 1164
            W KK S    GSY+QAA
Sbjct: 329  WRKKSSDRNRGSYSQAA 345


>ref|NP_061823.2| HLA class I histocompatibility antigen, alpha chain F isoform 2
            precursor [Homo sapiens].
          Length = 346

 Score =  290 bits (741), Expect(2) = 6e-79
 Identities = 154/311 (49%), Positives = 202/311 (64%), Gaps = 5/311 (1%)
 Frame = +2

Query: 128  VLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEEM--KA 301
            +LL S   +L +T A +HSL+YF  A+S    G P + A   +DD  F+R+D++    + 
Sbjct: 7    LLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIPRM 66

Query: 302  KSCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPH 478
            +    W+ +E P Y+   T    +  +  R+ LRN+ R YNQ+            + G H
Sbjct: 67   EPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQS------------EAGSH 114

Query: 479  TLQFNYGCELQQDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNF 655
            TLQ   GC++  DGR   G+ Q+ YDG DY+SL+ D   +TAA  +AQ T++ +EA+  +
Sbjct: 115  TLQGMNGCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEE-Y 173

Query: 656  IERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKE 835
             E  + YLE EC+  LRRYLE   E+L R DPPK HV  HP SD   TLRCWALGFYP E
Sbjct: 174  AEEFRTYLEGECLELLRRYLENGKETLQRADPPKAHVAHHPISDHEATLRCWALGFYPAE 233

Query: 836  ISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTL 1015
            I+LTWQR+G++Q+QD ELVETRP+GDGTFQKWAA+VVPPGEEQ YTCHVQHEGL +PL L
Sbjct: 234  ITLTWQRDGEEQTQDTELVETRPAGDGTFQKWAAVVVPPGEEQRYTCHVQHEGLPQPLIL 293

Query: 1016 RWE-PPQPPVP 1045
            RWE  PQP +P
Sbjct: 294  RWEQSPQPTIP 304



 Score = 24.6 bits (52), Expect(2) = 6e-79
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 1114 WEKKRSGEKGGSYTQAA 1164
            W KK S    GSY+QAA
Sbjct: 329  WRKKSSDRNRGSYSQAA 345


>ref|NP_001522.1| major histocompatibility complex class I-related gene protein isoform
            1 precursor [Homo sapiens].
          Length = 341

 Score =  214 bits (546), Expect = 1e-55
 Identities = 107/298 (35%), Positives = 168/298 (56%), Gaps = 2/298 (0%)
 Frame = +2

Query: 155  LQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEEMKAKSCVQWLREE- 331
            ++ + +RTHSL+YF L +S+   GVP F + G +D  P   YD+   + +    W+ E  
Sbjct: 17   VKHSDSRTHSLRYFRLGVSDPIHGVPEFISVGYVDSHPITTYDSVTRQKEPRAPWMAENL 76

Query: 332  -PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPHTLQFNYGCEL 508
             P ++   T++     ++F++ L+ +QR+YN +              G HT Q   GCEL
Sbjct: 77   APDHWERYTQLLRGWQQMFKVELKRLQRHYNHS--------------GSHTYQRMIGCEL 122

Query: 509  QQDGRTSGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNFIERDKNYLEKE 688
             +DG T+G  QY YDG D+L  + D L + A   +A   KQ WEA+++ +   KN+LE+E
Sbjct: 123  LEDGSTTGFLQYAYDGQDFLIFNKDTLSWLAVDNVAHTIKQAWEANQHELLYQKNWLEEE 182

Query: 689  CIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQD 868
            CI WL+R+LE+  ++L RT+PP   V R  +      L C A GFYP EI +TW + G++
Sbjct: 183  CIAWLKRFLEYGKDTLQRTEPPLVRVNRKETFPGVTALFCKAHGFYPPEIYMTWMKNGEE 242

Query: 869  QSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWEPPQPPV 1042
              Q+++  +  PSGDGT+Q WA++ + P     Y+CHV+H G+   L +  E    P+
Sbjct: 243  IVQEIDYGDILPSGDGTYQAWASIELDPQSSNLYSCHVEHCGVHMVLQVPQESETIPL 300


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 60,351,131
Number of extensions: 1747893
Number of successful extensions: 8095
Number of sequences better than 1.0e-05: 79
Number of HSP's gapped: 7955
Number of HSP's successfully gapped: 88
Length of query: 478
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 372
Effective length of database: 14,802,980
Effective search space: 5506708560
Effective search space used: 5506708560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001767
         (1436 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_032233.2| histocompatibility 2, T region locus 24 [Mus mu...   390   e-108
Alignment   gi|XP_001474348.1| PREDICTED: HLA class I histocompatibility an...   388   e-108
Alignment   gi|XP_003086969.1| PREDICTED: h-2 class I histocompatibility an...   300   1e-81
Alignment   gi|NP_001188389.1| H-2 class I histocompatibility antigen, Q9 a...   300   2e-81
Alignment   gi|NP_034524.3| H-2 class I histocompatibility antigen, Q7 alph...   299   4e-81
Alignment   gi|XP_003085233.1| PREDICTED: h-2 class I histocompatibility an...   299   4e-81
Alignment   gi|XP_003085228.1| PREDICTED: h-2 class I histocompatibility an...   299   4e-81
Alignment   gi|XP_003086971.1| PREDICTED: h-2 class I histocompatibility an...   298   9e-81
Alignment   gi|XP_003086970.1| PREDICTED: h-2 class I histocompatibility an...   298   9e-81
Alignment   gi|NP_034522.2| histocompatibility 2, Q region locus 2 [Mus mus...   290   2e-80

>ref|NP_032233.2| histocompatibility 2, T region locus 24 [Mus musculus].
          Length = 363

 Score =  390 bits (1002), Expect = e-108
 Identities = 183/309 (59%), Positives = 228/309 (73%)
 Frame = +2

Query: 119  WAPVLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEEMK 298
            WA  L+   LS  Q+  AR+HSL Y Y A++E  PGVP+F A G +D+QPFI YD+  MK
Sbjct: 2    WA--LIFWLLSHPQDGGARSHSLHYCYSAVTEPGPGVPSFFASGFLDNQPFIHYDSRSMK 59

Query: 299  AKSCVQWLREEPSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPH 478
            A+ C  WLRE   YF  ET++FT+RMKIF+L+LRN+++YYN +           +Q GPH
Sbjct: 60   AEPCADWLRENAQYFTHETEVFTNRMKIFQLSLRNIRQYYNSSGTQSQRADGFRQQAGPH 119

Query: 479  TLQFNYGCELQQDGRTSGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNFI 658
            TLQF YGCE++ + RT+GHWQYGYDG+DYL+L L  +QY AATFIA YTK+KWE +  ++
Sbjct: 120  TLQFTYGCEMRYN-RTTGHWQYGYDGSDYLTLDLGSMQYIAATFIAGYTKRKWENNEYWL 178

Query: 659  ERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKEI 838
            E++K YLEKECI+WL+RYL   G++  RTDPPKT VT        VTLRCWALGFYP +I
Sbjct: 179  EKEKTYLEKECILWLQRYLTMGGKNFTRTDPPKTTVTHQFKPKENVTLRCWALGFYPADI 238

Query: 839  SLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLR 1018
            +LTWQ  G++ +QD ELVETRPSGDGTFQKWAA+VVP GEEQ YTCHVQHE L +PL L+
Sbjct: 239  TLTWQLNGEELTQDTELVETRPSGDGTFQKWAAVVVPSGEEQRYTCHVQHEALTQPLVLK 298

Query: 1019 WEPPQPPVP 1045
            WEP Q   P
Sbjct: 299  WEPLQLTTP 307


>ref|XP_001474348.1| PREDICTED: HLA class I histocompatibility antigen, B-7 alpha
            chain-like [Mus musculus].
          Length = 486

 Score =  388 bits (997), Expect = e-108
 Identities = 182/309 (58%), Positives = 227/309 (73%)
 Frame = +2

Query: 119  WAPVLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEEMK 298
            WA  L+   LS   +  AR+HSL Y Y A++E  PGVP+F A G +D+QPFI YD+  MK
Sbjct: 2    WA--LIFWLLSHPHDGGARSHSLHYCYSAVTEPGPGVPSFFASGFLDNQPFIHYDSRSMK 59

Query: 299  AKSCVQWLREEPSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPH 478
            A+ C  WLRE   YF  ET++FT+RMKIF+L+LRN+++YYN +           +Q GPH
Sbjct: 60   AEPCADWLRENAQYFTHETEVFTNRMKIFQLSLRNIRQYYNSSGTQSQRADGFRQQAGPH 119

Query: 479  TLQFNYGCELQQDGRTSGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNFI 658
            TLQF YGCE++ + RT+GHWQYGYDG+DYL+L L  +QY AATFIA YTK+KWE +  ++
Sbjct: 120  TLQFTYGCEMRYN-RTTGHWQYGYDGSDYLTLDLGSMQYIAATFIAGYTKRKWENNEYWL 178

Query: 659  ERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKEI 838
            E++K YLEKECI+WL+RYL   G++  RTDPPKT VT        VTLRCWALGFYP +I
Sbjct: 179  EKEKTYLEKECILWLQRYLTMGGKNFTRTDPPKTTVTHQFKPKENVTLRCWALGFYPADI 238

Query: 839  SLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLR 1018
            +LTWQ  G++ +QD ELVETRPSGDGTFQKWAA+VVP GEEQ YTCHVQHE L +PL L+
Sbjct: 239  TLTWQLNGEELTQDTELVETRPSGDGTFQKWAAVVVPSGEEQRYTCHVQHEALTQPLVLK 298

Query: 1019 WEPPQPPVP 1045
            WEP Q   P
Sbjct: 299  WEPLQLTTP 307


>ref|XP_003086969.1| PREDICTED: h-2 class I histocompatibility antigen, D-P alpha
            chain-like isoform 1 [Mus musculus].
          Length = 362

 Score =  300 bits (769), Expect = 1e-81
 Identities = 148/294 (50%), Positives = 197/294 (67%), Gaps = 4/294 (1%)
 Frame = +2

Query: 161  ETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDN--EEMKAKSCVQWLREE- 331
            +TRA +HSL+YF  A+S    G P +   G +D+  F+R+D+  E  + +   +W+ +E 
Sbjct: 21   QTRAGSHSLRYFVTAVSRPGFGEPRYMEVGYVDNTEFVRFDSDAENPRYEPRARWIEQEG 80

Query: 332  PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPHTLQFNYGCELQ 511
            P Y+  ET+      + FR++LR   RYYNQ+              G HTLQ+  GC+++
Sbjct: 81   PEYWERETRRAKGNEQSFRVDLRTALRYYNQSAG------------GSHTLQWMAGCDVE 128

Query: 512  QDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNFIERDKNYLEKE 688
             DGR   G+WQ+ YDG DY++L+ D   +TAA   AQ T++KWE      ERD+ YLE E
Sbjct: 129  SDGRLLRGYWQFAYDGCDYIALNEDLKTWTAADMAAQITRRKWE-QAGAAERDRAYLEGE 187

Query: 689  CIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQD 868
            C+ WLRRYL+    +L RTDPPK HVT H   +  VTLRCWALGFYP +I+LTWQ  G++
Sbjct: 188  CVEWLRRYLKNGNATLLRTDPPKAHVTHHRRPEGDVTLRCWALGFYPADITLTWQLNGEE 247

Query: 869  QSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWEPP 1030
             +Q+MELVETRP+GDGTFQKWA++VVP G+EQ YTCHV+HEGL EPLTLRWEPP
Sbjct: 248  LTQEMELVETRPAGDGTFQKWASVVVPLGKEQKYTCHVEHEGLPEPLTLRWEPP 301


>ref|NP_001188389.1| H-2 class I histocompatibility antigen, Q9 alpha chain [Mus
            musculus].
          Length = 334

 Score =  300 bits (768), Expect = 2e-81
 Identities = 155/308 (50%), Positives = 203/308 (65%), Gaps = 4/308 (1%)
 Frame = +2

Query: 128  VLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDN--EEMKA 301
            +LL +   +L ETRA  HSLQYF+ A+S    G P F + G +DD  F+R+D+  E  + 
Sbjct: 7    LLLVAAALTLIETRAGQHSLQYFHTAVSRPGLGEPWFISVGYVDDTQFVRFDSDAENPRM 66

Query: 302  KSCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPH 478
            +   +W+ +E P Y+  ET+I     + FR +LR  Q YYNQ+            + G H
Sbjct: 67   EPRARWMEQEGPEYWERETQIAKGHEQSFRGSLRTAQSYYNQS------------KGGSH 114

Query: 479  TLQFNYGCELQQDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNF 655
            TLQ+ YGC++  DGR   G+ Q+ Y+G DY++L+ D   +TA    AQ T++KWE     
Sbjct: 115  TLQWMYGCDMGSDGRLLRGYLQFAYEGRDYIALNEDLKTWTAVDMAAQITRRKWE-QAGI 173

Query: 656  IERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKE 835
             E+D+ YLE  C+  LRRYLE   E+L RTDPPK HVT HP S   VTLRCWALGFYP +
Sbjct: 174  AEKDQAYLEGTCMQSLRRYLELGKETLLRTDPPKAHVTHHPRSYGAVTLRCWALGFYPAD 233

Query: 836  ISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTL 1015
            I+LTWQ  G++ +QDMELVETRP+GDGTFQKWA++VVP G+EQ+YTCHV HEGL EPLTL
Sbjct: 234  ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCHVNHEGLPEPLTL 293

Query: 1016 RWEPPQPP 1039
            RW   +PP
Sbjct: 294  RWGRWEPP 301


>ref|NP_034524.3| H-2 class I histocompatibility antigen, Q7 alpha chain isoform 1
            precursor [Mus musculus].
          Length = 334

 Score =  299 bits (765), Expect = 4e-81
 Identities = 154/308 (50%), Positives = 203/308 (65%), Gaps = 4/308 (1%)
 Frame = +2

Query: 128  VLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDN--EEMKA 301
            +LL +   +L ETRA  HSLQYF+ A+S    G P F + G +DD  F+R+D+  E  + 
Sbjct: 7    LLLVAAALTLIETRAGQHSLQYFHTAVSRPGLGEPWFISVGYVDDTQFVRFDSDAENPRM 66

Query: 302  KSCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPH 478
            +   +W+ +E P Y+  ET+I     + FR +LR  Q YYNQ+            + G H
Sbjct: 67   EPRARWMEQEGPEYWERETQIAKGHEQSFRGSLRTAQSYYNQS------------KGGSH 114

Query: 479  TLQFNYGCELQQDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNF 655
            TLQ+ YGC++  DGR   G+ Q+ Y+G DY++L+ D   +TA    AQ T++KWE     
Sbjct: 115  TLQWMYGCDMGSDGRLLRGYLQFAYEGRDYIALNEDLKTWTAVDMAAQITRRKWE-QAGI 173

Query: 656  IERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKE 835
             E+D+ YLE  C+  LRRYL+   E+L RTDPPK HVT HP S   VTLRCWALGFYP +
Sbjct: 174  AEKDQAYLEGTCMQSLRRYLQLGKETLLRTDPPKAHVTHHPRSYGAVTLRCWALGFYPAD 233

Query: 836  ISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTL 1015
            I+LTWQ  G++ +QDMELVETRP+GDGTFQKWA++VVP G+EQ+YTCHV HEGL EPLTL
Sbjct: 234  ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCHVNHEGLPEPLTL 293

Query: 1016 RWEPPQPP 1039
            RW   +PP
Sbjct: 294  RWGRWEPP 301


>ref|XP_003085233.1| PREDICTED: h-2 class I histocompatibility antigen, Q7 alpha
            chain-like isoform 1 [Mus musculus].
          Length = 334

 Score =  299 bits (765), Expect = 4e-81
 Identities = 154/308 (50%), Positives = 203/308 (65%), Gaps = 4/308 (1%)
 Frame = +2

Query: 128  VLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDN--EEMKA 301
            +LL +   +L ETRA  HSLQYF+ A+S    G P F + G +DD  F+R+D+  E  + 
Sbjct: 7    LLLVAAALTLIETRAGQHSLQYFHTAVSRPGLGEPWFISVGYVDDTQFVRFDSDAENPRM 66

Query: 302  KSCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPH 478
            +   +W+ +E P Y+  ET+I     + FR +LR  Q YYNQ+            + G H
Sbjct: 67   EPRARWMEQEGPEYWERETQIAKGHEQSFRGSLRTAQSYYNQS------------KGGSH 114

Query: 479  TLQFNYGCELQQDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNF 655
            TLQ+ YGC++  DGR   G+ Q+ Y+G DY++L+ D   +TA    AQ T++KWE     
Sbjct: 115  TLQWMYGCDMGSDGRLLRGYLQFAYEGRDYIALNEDLKTWTAVDMAAQITRRKWE-QAGI 173

Query: 656  IERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKE 835
             E+D+ YLE  C+  LRRYL+   E+L RTDPPK HVT HP S   VTLRCWALGFYP +
Sbjct: 174  AEKDQAYLEGTCMQSLRRYLQLGKETLLRTDPPKAHVTHHPRSYGAVTLRCWALGFYPAD 233

Query: 836  ISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTL 1015
            I+LTWQ  G++ +QDMELVETRP+GDGTFQKWA++VVP G+EQ+YTCHV HEGL EPLTL
Sbjct: 234  ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCHVNHEGLPEPLTL 293

Query: 1016 RWEPPQPP 1039
            RW   +PP
Sbjct: 294  RWGRWEPP 301


>ref|XP_003085228.1| PREDICTED: h-2 class I histocompatibility antigen, Q7 alpha
            chain-like isoform 1 [Mus musculus].
          Length = 330

 Score =  299 bits (765), Expect = 4e-81
 Identities = 154/308 (50%), Positives = 203/308 (65%), Gaps = 4/308 (1%)
 Frame = +2

Query: 128  VLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDN--EEMKA 301
            +LL +   +L ETRA  HSLQYF+ A+S    G P F + G +DD  F+R+D+  E  + 
Sbjct: 3    LLLVAAALTLIETRAGQHSLQYFHTAVSRPGLGEPWFISVGYVDDTQFVRFDSDAENPRM 62

Query: 302  KSCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPH 478
            +   +W+ +E P Y+  ET+I     + FR +LR  Q YYNQ+            + G H
Sbjct: 63   EPRARWMEQEGPEYWERETQIAKGHEQSFRGSLRTAQSYYNQS------------KGGSH 110

Query: 479  TLQFNYGCELQQDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNF 655
            TLQ+ YGC++  DGR   G+ Q+ Y+G DY++L+ D   +TA    AQ T++KWE     
Sbjct: 111  TLQWMYGCDMGSDGRLLRGYLQFAYEGRDYIALNEDLKTWTAVDMAAQITRRKWE-QAGI 169

Query: 656  IERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKE 835
             E+D+ YLE  C+  LRRYL+   E+L RTDPPK HVT HP S   VTLRCWALGFYP +
Sbjct: 170  AEKDQAYLEGTCMQSLRRYLQLGKETLLRTDPPKAHVTHHPRSYGAVTLRCWALGFYPAD 229

Query: 836  ISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTL 1015
            I+LTWQ  G++ +QDMELVETRP+GDGTFQKWA++VVP G+EQ+YTCHV HEGL EPLTL
Sbjct: 230  ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCHVNHEGLPEPLTL 289

Query: 1016 RWEPPQPP 1039
            RW   +PP
Sbjct: 290  RWGRWEPP 297


>ref|XP_003086971.1| PREDICTED: h-2 class I histocompatibility antigen, D-P alpha
            chain-like isoform 3 [Mus musculus].
          Length = 352

 Score =  298 bits (762), Expect = 9e-81
 Identities = 147/297 (49%), Positives = 197/297 (66%), Gaps = 4/297 (1%)
 Frame = +2

Query: 161  ETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDN--EEMKAKSCVQWLREE- 331
            +TRA +HSL+YF  A+S    G P +   G +D+  F+R+D+  E  + +   +W+ +E 
Sbjct: 21   QTRAGSHSLRYFVTAVSRPGFGEPRYMEVGYVDNTEFVRFDSDAENPRYEPRARWIEQEG 80

Query: 332  PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPHTLQFNYGCELQ 511
            P Y+  ET+      + FR++LR   RYYNQ+              G HTLQ+  GC+++
Sbjct: 81   PEYWERETRRAKGNEQSFRVDLRTALRYYNQSAG------------GSHTLQWMAGCDVE 128

Query: 512  QDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNFIERDKNYLEKE 688
             DGR   G+WQ+ YDG DY++L+ D   +TAA   AQ T++KWE      ERD+ YLE E
Sbjct: 129  SDGRLLRGYWQFAYDGCDYIALNEDLKTWTAADMAAQITRRKWE-QAGAAERDRAYLEGE 187

Query: 689  CIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQD 868
            C+ WLRRYL+    +L RTDPPK HVT H   +  VTLRCWALGFYP +I+LTWQ  G++
Sbjct: 188  CVEWLRRYLKNGNATLLRTDPPKAHVTHHRRPEGDVTLRCWALGFYPADITLTWQLNGEE 247

Query: 869  QSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWEPPQPP 1039
             +Q+MELVETRP+GDGTFQKWA++VVP G+EQ YTCHV+HEGL EPLTLRW   +PP
Sbjct: 248  LTQEMELVETRPAGDGTFQKWASVVVPLGKEQKYTCHVEHEGLPEPLTLRWGKEEPP 304


>ref|XP_003086970.1| PREDICTED: h-2 class I histocompatibility antigen, D-P alpha
            chain-like isoform 2 [Mus musculus].
          Length = 365

 Score =  298 bits (762), Expect = 9e-81
 Identities = 147/297 (49%), Positives = 197/297 (66%), Gaps = 4/297 (1%)
 Frame = +2

Query: 161  ETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDN--EEMKAKSCVQWLREE- 331
            +TRA +HSL+YF  A+S    G P +   G +D+  F+R+D+  E  + +   +W+ +E 
Sbjct: 21   QTRAGSHSLRYFVTAVSRPGFGEPRYMEVGYVDNTEFVRFDSDAENPRYEPRARWIEQEG 80

Query: 332  PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPHTLQFNYGCELQ 511
            P Y+  ET+      + FR++LR   RYYNQ+              G HTLQ+  GC+++
Sbjct: 81   PEYWERETRRAKGNEQSFRVDLRTALRYYNQSAG------------GSHTLQWMAGCDVE 128

Query: 512  QDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNFIERDKNYLEKE 688
             DGR   G+WQ+ YDG DY++L+ D   +TAA   AQ T++KWE      ERD+ YLE E
Sbjct: 129  SDGRLLRGYWQFAYDGCDYIALNEDLKTWTAADMAAQITRRKWE-QAGAAERDRAYLEGE 187

Query: 689  CIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQD 868
            C+ WLRRYL+    +L RTDPPK HVT H   +  VTLRCWALGFYP +I+LTWQ  G++
Sbjct: 188  CVEWLRRYLKNGNATLLRTDPPKAHVTHHRRPEGDVTLRCWALGFYPADITLTWQLNGEE 247

Query: 869  QSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWEPPQPP 1039
             +Q+MELVETRP+GDGTFQKWA++VVP G+EQ YTCHV+HEGL EPLTLRW   +PP
Sbjct: 248  LTQEMELVETRPAGDGTFQKWASVVVPLGKEQKYTCHVEHEGLPEPLTLRWGKEEPP 304


>ref|NP_034522.2| histocompatibility 2, Q region locus 2 [Mus musculus].
          Length = 360

 Score =  290 bits (743), Expect(2) = 2e-80
 Identities = 150/296 (50%), Positives = 190/296 (64%), Gaps = 4/296 (1%)
 Frame = +2

Query: 155  LQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDN--EEMKAKSCVQWLRE 328
            L ETRA +HSL+YF  A+S    G P F   G +DD  F+R+D+  E  + +    W+ +
Sbjct: 16   LTETRAGSHSLRYFTTAVSRPGLGEPRFIIVGYVDDTQFVRFDSDAENPRMEPRAPWMEQ 75

Query: 329  E-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPHTLQFNYGCE 505
            E P Y+   T++     + FR++L     YYNQ+            + G HTLQ+  GC+
Sbjct: 76   EGPEYWERNTQVSKENEQSFRVSLGTALSYYNQS------------KGGSHTLQWLVGCD 123

Query: 506  LQQDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNFIERDKNYLE 682
            L  DG    G+ Q  YDG DYL+L+ D + +TAA   A  T+ K E      E+ + YLE
Sbjct: 124  LGPDGSLLRGYEQSAYDGRDYLALNEDLITWTAADLAALKTRSKLE-QAGLAEKRRAYLE 182

Query: 683  KECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREG 862
             +C+ WLRRYLE   E+L  TDPPK HVT HPSS   VTLRCWALGFYP +I+LTWQ  G
Sbjct: 183  VDCLTWLRRYLELGKETLLHTDPPKAHVTHHPSSQGDVTLRCWALGFYPADITLTWQLNG 242

Query: 863  QDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWEPP 1030
            +D +QDMELVETRPSGDGTFQKWA+++VP GEE  YTCHV+HEGL EPLTLRWEPP
Sbjct: 243  EDLTQDMELVETRPSGDGTFQKWASVMVPFGEEPRYTCHVEHEGLPEPLTLRWEPP 298



 Score = 28.5 bits (62), Expect(2) = 2e-80
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 1123 KRSGEKGGSYTQAAGRDSTQSSGVSLIK 1206
            + +G K   Y Q  GRDS QSS +SL++
Sbjct: 332  RNTGGKVRDYAQDPGRDSPQSSDISLLE 359


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 50,864,913
Number of extensions: 1452496
Number of successful extensions: 6799
Number of sequences better than 1.0e-05: 130
Number of HSP's gapped: 6389
Number of HSP's successfully gapped: 141
Length of query: 478
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 373
Effective length of database: 12,463,779
Effective search space: 4648989567
Effective search space used: 4648989567
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001767
         (1436 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001090896.1| MHC class I antigen 3 [Sus scrofa].               344   e-107
Alignment   gi|XP_003356639.1| PREDICTED: patr class I histocompatibility a...   344   e-107
Alignment   gi|XP_003128290.1| PREDICTED: patr class I histocompatibility a...   334   e-104
Alignment   gi|NP_001107174.1| MHC class I antigen 2 [Sus scrofa].               331   e-104
Alignment   gi|NP_001090900.1| MHC class I antigen 1 [Sus scrofa].               333   e-103
Alignment   gi|NP_001107528.1| MHC class I antigen 5 [Sus scrofa].               332   e-101
Alignment   gi|NP_001107175.1| MHC class I antigen 8 [Sus scrofa].               326   1e-92
Alignment   gi|NP_998933.1| MHC class I antigen 7 [Sus scrofa].                  320   1e-89
Alignment   gi|NP_001107176.1| MHC class I antigen 6 [Sus scrofa].               284   2e-77
Alignment   gi|XP_003361021.1| PREDICTED: class I histocompatibility antige...   272   3e-73

>ref|NP_001090896.1| MHC class I antigen 3 [Sus scrofa].
          Length = 361

 Score =  344 bits (883), Expect(2) = e-107
 Identities = 175/309 (56%), Positives = 217/309 (70%), Gaps = 4/309 (1%)
 Frame = +2

Query: 131  LLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNE--EMKAK 304
            LL S   +L  TR   HSL+YF  A+S    G P F + G +DD  F+R+D++    + +
Sbjct: 8    LLLSGTLALTGTREGPHSLRYFDTAVSRPDRGKPRFISVGYVDDTQFVRFDSDAPNPRME 67

Query: 305  SCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPHT 481
                W+ +E   Y+++ET+      + FR+NL N++ YYNQ+            + G HT
Sbjct: 68   PRAPWIEQEGQEYWDEETRNAMGSAQTFRVNLNNLRGYYNQS------------EAGSHT 115

Query: 482  LQFNYGCELQQDGR-TSGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNFI 658
            LQ  YGC++  D     G+ Q  YDGADY++L+ D   +TAA   AQ TK+KWEA  +  
Sbjct: 116  LQSMYGCDVGPDWLFLRGYSQDAYDGADYIALNEDLRSWTAADTAAQITKRKWEA-ADEA 174

Query: 659  ERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKEI 838
            E+ ++YLE  C+ WL++YL+    +L R +PPKTHVTRHPSSDLGVTLRCWALGFYPKEI
Sbjct: 175  EQMRSYLEGACVEWLQKYLQMGNNTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEI 234

Query: 839  SLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLR 1018
            SLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLR
Sbjct: 235  SLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLR 294

Query: 1019 WEPPQPPVP 1045
            W+PPQPPVP
Sbjct: 295  WDPPQPPVP 303



 Score = 63.5 bits (153), Expect(2) = e-107
 Identities = 34/61 (55%), Positives = 34/61 (55%)
 Frame = +1

Query: 1036 PRPIVGIFXXXXXXXXXXXXXXXXXSWEKKRSGEKGGSYTQAAGRDSTQSSGVSLIKDPR 1215
            P PIVGI                   W KKR GEKGGSYTQAAG DS Q S VSL KDPR
Sbjct: 301  PVPIVGIIVGLVLVLVAGAVVAGVVIWRKKRPGEKGGSYTQAAGSDSAQGSDVSLTKDPR 360

Query: 1216 V 1218
            V
Sbjct: 361  V 361


>ref|XP_003356639.1| PREDICTED: patr class I histocompatibility antigen, A-126 alpha
            chain-like [Sus scrofa].
          Length = 361

 Score =  344 bits (882), Expect(2) = e-107
 Identities = 179/309 (57%), Positives = 217/309 (70%), Gaps = 4/309 (1%)
 Frame = +2

Query: 131  LLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEEMKAKS- 307
            LL S   +L  T+A  HSL YFY A+S    G   F   G +DD  F+R+D++   AK  
Sbjct: 8    LLLSGALALTGTQAGPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKME 67

Query: 308  -CVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPHT 481
               QW+++E P Y++ ET+I     + +R+ L+ ++ YYNQ+            + G HT
Sbjct: 68   PRAQWIKQEGPEYWDRETQISKETAQTYRVGLKTLRGYYNQS------------EAGSHT 115

Query: 482  LQFNYGCELQQDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNFI 658
            LQ  YGC L  DG    G+ Q  YDGADYL+L+ D   +TAA   AQ TK+KWEA  +  
Sbjct: 116  LQRMYGCYLGPDGLLLRGYRQDAYDGADYLALNEDLRSWTAADTAAQITKRKWEA-ADEA 174

Query: 659  ERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKEI 838
            E +++YL+  C+  LR+YLE   ++L R +PPKTHVTRHPSSDLGVTLRCWALGFYPKEI
Sbjct: 175  EGERSYLQGLCVESLRKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEI 234

Query: 839  SLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLR 1018
            SLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLR
Sbjct: 235  SLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLR 294

Query: 1019 WEPPQPPVP 1045
            W+PPQ PVP
Sbjct: 295  WDPPQTPVP 303



 Score = 62.4 bits (150), Expect(2) = e-107
 Identities = 34/61 (55%), Positives = 34/61 (55%)
 Frame = +1

Query: 1036 PRPIVGIFXXXXXXXXXXXXXXXXXSWEKKRSGEKGGSYTQAAGRDSTQSSGVSLIKDPR 1215
            P PIVGI                   W KKRSGEKGGSYTQAAG DS Q S VSL K PR
Sbjct: 301  PVPIVGIIVGLVLVLVAGAVVAGVVIWRKKRSGEKGGSYTQAAGSDSDQGSDVSLTKGPR 360

Query: 1216 V 1218
            V
Sbjct: 361  V 361


>ref|XP_003128290.1| PREDICTED: patr class I histocompatibility antigen, A-126 alpha
            chain-like [Sus scrofa].
          Length = 361

 Score =  334 bits (857), Expect(2) = e-104
 Identities = 174/309 (56%), Positives = 213/309 (68%), Gaps = 4/309 (1%)
 Frame = +2

Query: 131  LLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDN--EEMKAK 304
            LL S   +L  T+A  HSL YFY A+S    G   F A G +DD  F+R+DN     + +
Sbjct: 8    LLLSGTLALTGTQAGPHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRME 67

Query: 305  SCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPHT 481
              V W+++E   Y+++ET+      + + + L  ++ YYNQ+            + G HT
Sbjct: 68   PRVPWIQQEGQDYWDEETRKVKDNAQTYGVGLNTLRGYYNQS------------EAGSHT 115

Query: 482  LQFNYGCELQQDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNFI 658
            LQ  +GC L  DG    G+ Q  YDGADY++L+ D   +TAA   AQ +K+KWEA  +  
Sbjct: 116  LQSMFGCYLGPDGLLLHGYRQDAYDGADYIALNEDLRSWTAADMAAQISKRKWEA-ADAA 174

Query: 659  ERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKEI 838
            E  ++YL+  C+  LRRYLE   ++L R +PPKTHVTRHPSSDLGVTLRCWALGFYPKEI
Sbjct: 175  EHWRSYLQGLCVESLRRYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEI 234

Query: 839  SLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLR 1018
            SLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLR
Sbjct: 235  SLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLR 294

Query: 1019 WEPPQPPVP 1045
            W+P QPPVP
Sbjct: 295  WDPAQPPVP 303



 Score = 62.8 bits (151), Expect(2) = e-104
 Identities = 34/61 (55%), Positives = 34/61 (55%)
 Frame = +1

Query: 1036 PRPIVGIFXXXXXXXXXXXXXXXXXSWEKKRSGEKGGSYTQAAGRDSTQSSGVSLIKDPR 1215
            P PIVGI                   W K RSGEKGGSYTQAAG DS Q S VSL KDPR
Sbjct: 301  PVPIVGIIVGLVLVLVAGAVVAGVVIWRKTRSGEKGGSYTQAAGSDSDQGSDVSLTKDPR 360

Query: 1216 V 1218
            V
Sbjct: 361  V 361


>ref|NP_001107174.1| MHC class I antigen 2 [Sus scrofa].
          Length = 364

 Score =  331 bits (849), Expect(2) = e-104
 Identities = 170/312 (54%), Positives = 216/312 (69%), Gaps = 4/312 (1%)
 Frame = +2

Query: 122  APVLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNE--EM 295
            A ++L S   +L  T A  HSL YFY A+S    G   F A G +DD  F+R+D++    
Sbjct: 8    AILILLSGALALTGTWAGPHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDSDAPNP 67

Query: 296  KAKSCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTG 472
            + +    W+++E   Y++ ET+      +  R+NL+ ++ YYNQ+            + G
Sbjct: 68   RMEPRAPWIQQEGQDYWDRETRNVMGSAQTDRVNLKTLRGYYNQS------------EAG 115

Query: 473  PHTLQFNYGCELQQDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADR 649
             HT+Q  YGC++  DG    G+ Q  YDGADY++L+ D   +TAA   AQ TK+KWEA  
Sbjct: 116  SHTIQVMYGCDVGPDGLLLRGYRQDAYDGADYIALNEDLRSWTAADTAAQITKRKWEA-A 174

Query: 650  NFIERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYP 829
            +  E +++YL+  C+  L++YLE   ++L R +PPKTHVTRHPSSDLGVTLRCWALGFYP
Sbjct: 175  DAAEGERSYLQGLCVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYP 234

Query: 830  KEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPL 1009
            KEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEG QEP 
Sbjct: 235  KEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGPQEPR 294

Query: 1010 TLRWEPPQPPVP 1045
            TLRW+PPQPP+P
Sbjct: 295  TLRWDPPQPPIP 306



 Score = 65.5 bits (158), Expect(2) = e-104
 Identities = 35/61 (57%), Positives = 35/61 (57%)
 Frame = +1

Query: 1036 PRPIVGIFXXXXXXXXXXXXXXXXXSWEKKRSGEKGGSYTQAAGRDSTQSSGVSLIKDPR 1215
            P PIVGI                   W KKRSGEKGGSYTQAAG DS Q S VSL KDPR
Sbjct: 304  PIPIVGIIVGLVLVLVAGAMVTGVVIWRKKRSGEKGGSYTQAAGSDSAQGSDVSLTKDPR 363

Query: 1216 V 1218
            V
Sbjct: 364  V 364


>ref|NP_001090900.1| MHC class I antigen 1 [Sus scrofa].
          Length = 361

 Score =  333 bits (855), Expect(2) = e-103
 Identities = 174/309 (56%), Positives = 215/309 (69%), Gaps = 4/309 (1%)
 Frame = +2

Query: 131  LLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEEM--KAK 304
            LL S   +L  T+A  HSL YFY A+S    G   F   G +DD  F+R+D++ +  + +
Sbjct: 8    LLLSGTLALTGTQAGPHSLSYFYTAVSRPDLGDSRFIEVGYVDDTQFVRFDSDALNPRME 67

Query: 305  SCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPHT 481
                W+ +E   Y+++ET+      +I R++L+ ++ YYNQ+            + G HT
Sbjct: 68   PRAPWIEKEGQDYWDEETRKVKETAQINRVDLKTLRGYYNQS------------EAGSHT 115

Query: 482  LQFNYGCELQQDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNFI 658
            LQ  +GC L  DG    G+ Q  YDGADY++L+ D   +TAA   AQ TK+KWEA  +  
Sbjct: 116  LQSMFGCYLGPDGLLLRGYRQDAYDGADYIALNEDLRSWTAADTAAQITKRKWEA-ADEA 174

Query: 659  ERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKEI 838
            E+ ++YL+  C+  LR YLE   ++L R DPPKTHVTRHPSSDLGVTLRCWALGFYPKEI
Sbjct: 175  EQWRSYLQGLCVESLREYLEMGKDTLQRADPPKTHVTRHPSSDLGVTLRCWALGFYPKEI 234

Query: 839  SLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLR 1018
            SLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLR
Sbjct: 235  SLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLR 294

Query: 1019 WEPPQPPVP 1045
            W+P QPPVP
Sbjct: 295  WDPAQPPVP 303



 Score = 62.4 bits (150), Expect(2) = e-103
 Identities = 34/61 (55%), Positives = 34/61 (55%)
 Frame = +1

Query: 1036 PRPIVGIFXXXXXXXXXXXXXXXXXSWEKKRSGEKGGSYTQAAGRDSTQSSGVSLIKDPR 1215
            P PIVGI                   W KKRSGEKGGSYTQAAG DS Q S VSL K PR
Sbjct: 301  PVPIVGIIVGLVLVLVAGAVVAGVVIWRKKRSGEKGGSYTQAAGSDSDQGSDVSLTKGPR 360

Query: 1216 V 1218
            V
Sbjct: 361  V 361


>ref|NP_001107528.1| MHC class I antigen 5 [Sus scrofa].
          Length = 361

 Score =  332 bits (852), Expect(2) = e-101
 Identities = 170/309 (55%), Positives = 213/309 (68%), Gaps = 4/309 (1%)
 Frame = +2

Query: 131  LLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEEMKAKSC 310
            LL S   +L  TRA  HSL Y + ++S    G P F A G +DD P +R+D++  K +  
Sbjct: 8    LLLSGALALTGTRAGPHSLSYLFTSVSRPGRGEPRFIAVGCVDDTPLVRFDSDARKPRKE 67

Query: 311  VQ--WLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPHT 481
             +  W+ +E P Y+++ET+I     +  R NL  ++ YYNQ+            +   HT
Sbjct: 68   PRAWWIEQEGPEYWDEETRISKDNAQTLRGNLNTLRGYYNQS------------EARSHT 115

Query: 482  LQFNYGCELQQDGRTSGHW-QYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNFI 658
            +Q  +GC++  D      + Q  YDGADYL+L+ D   +TAA   AQ TK+KWE   N  
Sbjct: 116  IQSLFGCDVGPDRLLLRRYRQDAYDGADYLALNEDLRSWTAADTAAQITKRKWET-ANVA 174

Query: 659  ERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKEI 838
            E++++YL+  C+  L++YLE   ++L R +PPKTHVTRHPSSDLGVTLRCWALGFYPKEI
Sbjct: 175  EQERSYLQGLCVEGLQKYLEMGEDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEI 234

Query: 839  SLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLR 1018
            SLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLR
Sbjct: 235  SLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLR 294

Query: 1019 WEPPQPPVP 1045
            W+P Q PVP
Sbjct: 295  WDPAQTPVP 303



 Score = 56.6 bits (135), Expect(2) = e-101
 Identities = 31/64 (48%), Positives = 33/64 (51%)
 Frame = +1

Query: 1027 SSAPRPIVGIFXXXXXXXXXXXXXXXXXSWEKKRSGEKGGSYTQAAGRDSTQSSGVSLIK 1206
            +  P P+VGI                   W  KRSGEKGGSYTQAAG DS Q S V L  
Sbjct: 298  AQTPVPMVGIIVGLVLVLVAGAMVAGVVIWRLKRSGEKGGSYTQAAGSDSAQGSDVFLPM 357

Query: 1207 DPRV 1218
            DPRV
Sbjct: 358  DPRV 361


>ref|NP_001107175.1| MHC class I antigen 8 [Sus scrofa].
          Length = 355

 Score =  326 bits (835), Expect(2) = 1e-92
 Identities = 166/304 (54%), Positives = 207/304 (68%), Gaps = 4/304 (1%)
 Frame = +2

Query: 128  VLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEEM--KA 301
            +LL   L +L ET A +HS++YF+  +S    G P +   G +DD  F+R+D+E    + 
Sbjct: 5    MLLLVLLGALTETWAGSHSMRYFHTVVSRPGYGEPRYLEVGYVDDTQFVRFDSEAQNPRM 64

Query: 302  KSCVQWLREE-PSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPH 478
            +    W+ +E   Y+++ET+     ++ FR NL  ++ YYNQ+            +TG H
Sbjct: 65   EPRAPWVEQEGQEYWDEETQRVKDLVQNFRRNLMILRGYYNQS------------ETGSH 112

Query: 479  TLQFNYGCELQQDGRTSG-HWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNF 655
            T Q  YGCE    GR    HWQY YDG DY++L+ D   +TAA   A+ T++KW+  R  
Sbjct: 113  TFQLTYGCEEGSHGRPLHVHWQYAYDGEDYITLNEDLSSWTAADMAARVTQRKWDKSRAH 172

Query: 656  IERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKE 835
             ER K+YLE  C+ WLRRYLE   E L R DPPK +VT HPSSD  VTLRCWALGFYPKE
Sbjct: 173  -ERFKSYLEGTCVEWLRRYLENGREMLQRADPPKAYVTCHPSSDNKVTLRCWALGFYPKE 231

Query: 836  ISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTL 1015
            ISLTW+REGQDQSQD+E+VETRPSGDGTFQKWAALVVPPGEEQSYTCHV+HEGLQEPLTL
Sbjct: 232  ISLTWRREGQDQSQDVEVVETRPSGDGTFQKWAALVVPPGEEQSYTCHVKHEGLQEPLTL 291

Query: 1016 RWEP 1027
            RWEP
Sbjct: 292  RWEP 295



 Score = 33.1 bits (74), Expect(2) = 1e-92
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +1

Query: 1114 WEKKRSGEKGGSYTQAAGRDSTQSSGVS 1197
            W+K+ SG K GSY+QA   +S ++S VS
Sbjct: 321  WKKRFSGRKRGSYSQAPSNNSVENSDVS 348


>ref|NP_998933.1| MHC class I antigen 7 [Sus scrofa].
          Length = 401

 Score =  320 bits (820), Expect(2) = 1e-89
 Identities = 166/312 (53%), Positives = 211/312 (67%), Gaps = 4/312 (1%)
 Frame = +2

Query: 122  APVLLHSFLSSLQETRARTHSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNE--EM 295
            A +LL S    L +  AR HSL+YFY A+S  +   P F+  G +DD  F+R+D+     
Sbjct: 5    ALLLLLSGTLVLTQPWARPHSLRYFYTAVSRPSRRDPRFSVVGYVDDTQFVRFDSNAPNP 64

Query: 296  KAKSCVQWLR-EEPSYFNDETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTG 472
            + +    W+  E P   +  T+I+    + F+++L  ++ YYNQ+            + G
Sbjct: 65   REEPRTPWVELEGPECCDRNTRIYKDTSQNFQVSLNVLRGYYNQS------------EAG 112

Query: 473  PHTLQFNYGCELQQDGRT-SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADR 649
             HT Q+  GC + +DGR   G+ Q+ YDGADY+ L+ D   +TA    AQ T++KWE + 
Sbjct: 113  SHTYQWLCGCYVARDGRLLRGYSQFAYDGADYIVLNEDLRSWTAVGMAAQITRRKWE-EE 171

Query: 650  NFIERDKNYLEKECIVWLRRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYP 829
               E+ + YLE  C+  L RYL    E+L R+DPPKTHVTRHPSSD  VTLRCWALGFYP
Sbjct: 172  TVAEQSRAYLEVACVQSLHRYLANGKETLQRSDPPKTHVTRHPSSDNKVTLRCWALGFYP 231

Query: 830  KEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPL 1009
            KEISLTWQ+EGQDQSQD+E+VETRPSGDGTF+KWAALVVPPGEEQSYTCHVQHEGLQEPL
Sbjct: 232  KEISLTWQQEGQDQSQDVEVVETRPSGDGTFRKWAALVVPPGEEQSYTCHVQHEGLQEPL 291

Query: 1010 TLRWEPPQPPVP 1045
            TLRW+PPQPPVP
Sbjct: 292  TLRWDPPQPPVP 303



 Score = 29.3 bits (64), Expect(2) = 1e-89
 Identities = 18/53 (33%), Positives = 21/53 (39%)
 Frame = +1

Query: 1036 PRPIVGIFXXXXXXXXXXXXXXXXXSWEKKRSGEKGGSYTQAAGRDSTQSSGV 1194
            P PIVGI                   W KK SG K   Y QA     +++SGV
Sbjct: 301  PVPIVGIIVGLVLVLVTGAVVTGVVIWRKKCSGGKVRKYQQAERSSRSENSGV 353


>ref|NP_001107176.1| MHC class I antigen 6 [Sus scrofa].
          Length = 369

 Score =  284 bits (727), Expect(2) = 2e-77
 Identities = 145/289 (50%), Positives = 191/289 (66%), Gaps = 4/289 (1%)
 Frame = +2

Query: 176  THSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEEM--KAKSCVQWLREEP-SYFN 346
            +HSL+Y ++ +S    G   +++ G +DD  F+R+ ++    + +    W+ +E   Y++
Sbjct: 51   SHSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYWD 110

Query: 347  DETKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPHTLQFNYGCELQQDGRT 526
             +T I     K  R NLR +   +N            H Q+  H+  +  GC++  +GR 
Sbjct: 111  RQTDIAKEHSKASRSNLRVIIGNHN------------HSQSESHSFLWVSGCDVGSEGRI 158

Query: 527  -SGHWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNFIERDKNYLEKECIVWL 703
              G+ Q+ YDG DY+ L+ D   +TA + +AQ  ++KWEA+    E+ + YLE EC+ WL
Sbjct: 159  LRGYEQFSYDGDDYIVLNEDLRSWTAISTVAQIIRRKWEAE-GVAEQYRAYLEIECVEWL 217

Query: 704  RRYLEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDM 883
            R+YLE   + L R  PPKTHVTRHP  D  VTLRCWALGFYPKEISLTWQR+G+DQ+QDM
Sbjct: 218  RKYLEKGKDVLQRAVPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDM 277

Query: 884  ELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWEPP 1030
            ELVETRPSGDGTFQKWAALVVP GEEQSYTC VQHEGLQEPLTLRWEPP
Sbjct: 278  ELVETRPSGDGTFQKWAALVVPSGEEQSYTCQVQHEGLQEPLTLRWEPP 326



 Score = 24.3 bits (51), Expect(2) = 2e-77
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 1114 WEKKRSGEKGGSYTQAA 1164
            W K+ SG   G+Y QAA
Sbjct: 352  WRKRNSGGNRGNYVQAA 368


>ref|XP_003361021.1| PREDICTED: class I histocompatibility antigen, Gogo-C*0101/C*0102
            alpha chain-like [Sus scrofa].
          Length = 374

 Score =  272 bits (696), Expect = 3e-73
 Identities = 132/286 (46%), Positives = 179/286 (62%), Gaps = 1/286 (0%)
 Frame = +2

Query: 176  THSLQYFYLAMSEAAPGVPAFTAFGVIDDQPFIRYDNEEMKAKSCVQWLRE-EPSYFNDE 352
            THSL+Y YLA+SE  PG+P F A G +DDQ FIRYD+   KA+    W+   +  Y+  E
Sbjct: 41   THSLRYHYLALSEPGPGLPQFLAVGYVDDQVFIRYDSRRGKAEPQAPWMAHMDAQYWEKE 100

Query: 353  TKIFTSRMKIFRLNLRNVQRYYNQTMENGLNKALEHKQTGPHTLQFNYGCELQQDGRTSG 532
            TK      K+ ++ +  V  YYNQ+             +G H+ Q  +GCE+Q+DG ++G
Sbjct: 101  TKKQRIWAKVQQVEMWTVMGYYNQS-------------SGMHSTQRMFGCEIQEDGHSTG 147

Query: 533  HWQYGYDGADYLSLHLDPLQYTAATFIAQYTKQKWEADRNFIERDKNYLEKECIVWLRRY 712
             WQ+G+DG D+LSL L+ L + +A  +A  TK+ WE +R + E DK Y+E  C+  LR+Y
Sbjct: 148  FWQFGFDGQDHLSLDLETLSWVSAEPVAVRTKRWWETERCYAEYDKAYVEGVCLTSLRKY 207

Query: 713  LEFAGESLNRTDPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELV 892
            LE  G+  +R +PP   VT+H + D G TLRCWALGFYP++ISL+W    ++ +   E V
Sbjct: 208  LELGGQRFSRREPPTVRVTKHTAQDGGTTLRCWALGFYPQDISLSWWLGEKELTSKTEYV 267

Query: 893  ETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWEPP 1030
            ETRPSGDGT+Q W A  VP GEE  YTCHVQH  L   LT+ WE P
Sbjct: 268  ETRPSGDGTYQTWLATQVPAGEEIQYTCHVQHSSLNHTLTVTWESP 313


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 38,145,285
Number of extensions: 1121547
Number of successful extensions: 5348
Number of sequences better than 1.0e-05: 40
Number of HSP's gapped: 5262
Number of HSP's successfully gapped: 51
Length of query: 478
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 375
Effective length of database: 8,779,541
Effective search space: 3292327875
Effective search space used: 3292327875
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001767
         (1436 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr07                                                         593   e-166

>Sscrofa_Chr07 
||          Length = 134764511

 Score =  593 bits (299), Expect = e-166
 Identities = 299/299 (100%)
 Strand = Plus / Minus

                                                                            
Query: 174      gaacacattctctgcaatatttctacttggccatgtctgaggctgcaccaggtgtccctg 233
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26679913 gaacacattctctgcaatatttctacttggccatgtctgaggctgcaccaggtgtccctg 26679854

                                                                            
Query: 234      catttactgctttcggagtcatagacgaccagcccttcattcgctatgacaatgaggaga 293
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26679853 catttactgctttcggagtcatagacgaccagcccttcattcgctatgacaatgaggaga 26679794

                                                                            
Query: 294      tgaaggcaaaatcttgtgttcagtggttgagggaggagccaagttacttcaatgatgaga 353
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26679793 tgaaggcaaaatcttgtgttcagtggttgagggaggagccaagttacttcaatgatgaga 26679734

                                                                            
Query: 354      ccaagatcttcaccagtcggatgaagatcttccgcttaaatctgaggaacgtgcagcgat 413
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26679733 ccaagatcttcaccagtcggatgaagatcttccgcttaaatctgaggaacgtgcagcgat 26679674

                                                                           
Query: 414      attacaaccaaaccatggagaatgggctgaacaaagccctggagcacaagcaaacaggt 472
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26679673 attacaaccaaaccatggagaatgggctgaacaaagccctggagcacaagcaaacaggt 26679615



 Score =  553 bits (279), Expect = e-155
 Identities = 279/279 (100%)
 Strand = Plus / Minus

                                                                            
Query: 468      caggtccccacaccctccagttcaactacggctgtgagctccagcaggatggccggacct 527
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26677051 caggtccccacaccctccagttcaactacggctgtgagctccagcaggatggccggacct 26676992

                                                                            
Query: 528      cagggcactggcagtatggctatgatggtgccgactacctgagcttgcatctggatcctc 587
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26676991 cagggcactggcagtatggctatgatggtgccgactacctgagcttgcatctggatcctc 26676932

                                                                            
Query: 588      tgcagtacacagcggccacattcattgctcaatataccaagcaaaaatgggaggccgata 647
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26676931 tgcagtacacagcggccacattcattgctcaatataccaagcaaaaatgggaggccgata 26676872

                                                                            
Query: 648      ggaacttcatagagagagacaagaactacttggagaaagagtgcattgtctggctgcgga 707
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26676871 ggaacttcatagagagagacaagaactacttggagaaagagtgcattgtctggctgcgga 26676812

                                                       
Query: 708      gatacttggagtttgcaggggagagcttgaaccgcactg 746
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 26676811 gatacttggagtttgcaggggagagcttgaaccgcactg 26676773



 Score =  541 bits (273), Expect = e-151
 Identities = 276/277 (99%)
 Strand = Plus / Minus

                                                                            
Query: 746      gaccctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttgagg 805
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26675876 gaccctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttgagg 26675817

                                                                            
Query: 806      tgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggccag 865
                |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 26675816 tgctgggccctgggcttctaccctaaggagatctccctgaactggcagcgcgagggccag 26675757

                                                                            
Query: 866      gaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttccag 925
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26675756 gaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttccag 26675697

                                                                            
Query: 926      aagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcag 985
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26675696 aagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcag 26675637

                                                     
Query: 986      cacgagggcctgcaggagcccctcaccctgagatggg 1022
                |||||||||||||||||||||||||||||||||||||
Sbjct: 26675636 cacgagggcctgcaggagcccctcaccctgagatggg 26675600



 Score =  535 bits (270), Expect = e-149
 Identities = 273/274 (99%)
 Strand = Plus / Minus

                                                                            
Query: 749      cctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttgaggtgc 808
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24685328 cctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttgaggtgc 24685269

                                                                            
Query: 809      tgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggccaggac 868
                ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 24685268 tgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggccaggac 24685209

                                                                            
Query: 869      cagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttccagaag 928
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24685208 cagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttccagaag 24685149

                                                                            
Query: 929      tgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcac 988
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24685148 tgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcac 24685089

                                                  
Query: 989      gagggcctgcaggagcccctcaccctgagatggg 1022
                ||||||||||||||||||||||||||||||||||
Sbjct: 24685088 gagggcctgcaggagcccctcaccctgagatggg 24685055



 Score =  533 bits (269), Expect = e-149
 Identities = 275/277 (99%)
 Strand = Plus / Minus

                                                                            
Query: 746      gaccctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttgagg 805
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24706184 gaccctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttgagg 24706125

                                                                            
Query: 806      tgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggccag 865
                |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 24706124 tgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggccag 24706065

                                                                            
Query: 866      gaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttccag 925
                ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24706064 gaccagagccaggacttggagctggtggagaccaggccctcaggggatgggaccttccag 24706005

                                                                            
Query: 926      aagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcag 985
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24706004 aagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcag 24705945

                                                     
Query: 986      cacgagggcctgcaggagcccctcaccctgagatggg 1022
                |||||||||||||||||||||||||||||||||||||
Sbjct: 24705944 cacgagggcctgcaggagcccctcaccctgagatggg 24705908



 Score =  519 bits (262), Expect = e-144
 Identities = 271/274 (98%)
 Strand = Plus / Minus

                                                                            
Query: 749      cctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttgaggtgc 808
                ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 24643492 cctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccctgaggtgc 24643433

                                                                            
Query: 809      tgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggccaggac 868
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24643432 tgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggccaggac 24643373

                                                                            
Query: 869      cagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttccagaag 928
                |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24643372 cagagccaagacatggagctggtggagaccaggccctcaggggatgggaccttccagaag 24643313

                                                                            
Query: 929      tgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcac 988
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24643312 tgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcac 24643253

                                                  
Query: 989      gagggcctgcaggagcccctcaccctgagatggg 1022
                ||||||||||||||||||||||||||||||||||
Sbjct: 24643252 gagggcctgcaggagcccctcaccctgagatggg 24643219



 Score =  511 bits (258), Expect = e-142
 Identities = 270/274 (98%)
 Strand = Plus / Minus

                                                                            
Query: 749      cctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttgaggtgc 808
                ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 24749843 cctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccttgaggtgc 24749784

                                                                            
Query: 809      tgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggccaggac 868
                ||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 24749783 tgggctctgggcttccaccctaaggagatctccctgacctggcagcgggagggccaggac 24749724

                                                                            
Query: 869      cagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttccagaag 928
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24749723 cagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttccagaag 24749664

                                                                            
Query: 929      tgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcac 988
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24749663 tgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcac 24749604

                                                  
Query: 989      gagggcctgcaggagcccctcaccctgagatggg 1022
                ||||||||||||||||||||||||||||||||||
Sbjct: 24749603 gagggcctgcaggagcccctcaccctgagatggg 24749570



 Score =  496 bits (250), Expect = e-137
 Identities = 269/274 (98%), Gaps = 1/274 (0%)
 Strand = Plus / Minus

                                                                            
Query: 749      cctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttgaggtgc 808
                |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 24657268 cctccaaagacacatgtgacccgccaccccagctctgacctgagggtcaccttgaggtgc 24657209

                                                                            
Query: 809      tgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggccaggac 868
                ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 24657208 tgggccctgggcttctaccctaaggagatctccctgacctggcagcgggaggggcaggac 24657149

                                                                            
Query: 869      cagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttccagaag 928
                ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 24657148 cagagccaggacatggagctggtggagaccaggccctca-gggatgggaccttccagaag 24657090

                                                                            
Query: 929      tgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcac 988
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24657089 tgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcac 24657030

                                                  
Query: 989      gagggcctgcaggagcccctcaccctgagatggg 1022
                ||||||||||||||||||||||||||||||||||
Sbjct: 24657029 gagggcctgcaggagcccctcaccctgagatggg 24656996



 Score =  496 bits (250), Expect = e-137
 Identities = 268/274 (97%)
 Strand = Plus / Minus

                                                                            
Query: 749      cctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttgaggtgc 808
                |||||||||||||||||||||| | |||||||||||||||| ||||||||| ||||||||
Sbjct: 24722396 cctccaaagacacatgtgacccactaccccagctctgacctgggggtcaccctgaggtgc 24722337

                                                                            
Query: 809      tgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggccaggac 868
                ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 24722336 tgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggccaagac 24722277

                                                                            
Query: 869      cagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttccagaag 928
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24722276 cagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttccagaag 24722217

                                                                            
Query: 929      tgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcac 988
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24722216 tgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcac 24722157

                                                  
Query: 989      gagggcctgcaggagcccctcaccctgagatggg 1022
                ||||||||||||||||||||||||||||||||||
Sbjct: 24722156 gagggcctgcaggagcccctcaccctgagatggg 24722123



 Score =  440 bits (222), Expect = e-121
 Identities = 261/274 (95%)
 Strand = Plus / Plus

                                                                            
Query: 749      cctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttgaggtgc 808
                |||||||||||||||||||||||||||||||||||||||      |||||||||||||||
Sbjct: 27616067 cctccaaagacacatgtgacccgccaccccagctctgacaataaagtcaccttgaggtgc 27616126

                                                                            
Query: 809      tgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggccaggac 868
                ||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||
Sbjct: 27616127 tgggccctgggcttctaccctaaggagatctccctgacctggcagcaggaggggcaggac 27616186

                                                                            
Query: 869      cagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttccagaag 928
                |||||||||||| ||||| | ||||| |||||||||||||||||||||||||||||||||
Sbjct: 27616187 cagagccaggacgtggaggttgtggaaaccaggccctcaggggatgggaccttccagaag 27616246

                                                                            
Query: 929      tgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcac 988
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27616247 tgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcac 27616306

                                                  
Query: 989      gagggcctgcaggagcccctcaccctgagatggg 1022
                ||||||||||||||||||||||||||||||||||
Sbjct: 27616307 gagggcctgcaggagcccctcaccctgagatggg 27616340



 Score =  391 bits (197), Expect = e-106
 Identities = 257/277 (92%)
 Strand = Plus / Minus

                                                                            
Query: 746      gaccctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttgagg 805
                ||||| |||||| || |||||||| |||||||||||||||||      |||||| |||||
Sbjct: 27628606 gaccccccaaaggcatatgtgacctgccaccccagctctgacaataaagtcaccctgagg 27628547

                                                                            
Query: 806      tgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggccag 865
                |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||
Sbjct: 27628546 tgctgggccctgggcttctaccctaaggagatctccctgacctggcggcgggaggggcag 27628487

                                                                            
Query: 866      gaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttccag 925
                ||||||||||||||| ||||| | ||||| ||||||||||||||||||||||||||||||
Sbjct: 27628486 gaccagagccaggacgtggaggttgtggaaaccaggccctcaggggatgggaccttccag 27628427

                                                                            
Query: 926      aagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcag 985
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 27628426 aagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgaag 27628367

                                                     
Query: 986      cacgagggcctgcaggagcccctcaccctgagatggg 1022
                |||||||||||||||||||| ||||||||||||||||
Sbjct: 27628366 cacgagggcctgcaggagccactcaccctgagatggg 27628330



 Score =  383 bits (193), Expect = e-103
 Identities = 212/217 (97%), Gaps = 1/217 (0%)
 Strand = Plus / Minus

                                                                            
Query: 1215     agtgtgagacagctgccttgtggggactaagtgttacgagattcgtttacatcccacttt 1274
                ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 26674560 agtgtgagacagctgccttgtggggaccaagtgttacgagattcgttcacatcccacttt 26674501

                                                                            
Query: 1275     gtgacttcagatcccctgactcctgtttctgcagcagcatttgagtgtgtctgtgtccct 1334
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26674500 gtgacttcagatcccctgactcctgtttctgcagcagcatttgagtgtgtctgtgtccct 26674441

                                                                            
Query: 1335     atgagcatcatgagagggaggtggggaccctggcccagctctgtcccccacgtcccctcc 1394
                ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 26674440 atgagcatcatgaga-ggaggtggggaccctggcccagccctgtcccccacgtcccctcc 26674382

                                                     
Query: 1395     tcaccctgacctgtgttctcgtccctgatcctctttc 1431
                |||||||||||||||||||| ||||||||||||||||
Sbjct: 26674381 tcaccctgacctgtgttctcttccctgatcctctttc 26674345



 Score =  369 bits (186), Expect = 3e-99
 Identities = 252/274 (91%)
 Strand = Plus / Plus

                                                                            
Query: 749      cctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttgaggtgc 808
                ||||||||||| ||||||||||||||||||  || ||||      |||||  | || |||
Sbjct: 27604571 cctccaaagactcatgtgacccgccaccccttctatgacaataaagtcactctaagatgc 27604630

                                                                            
Query: 809      tgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggccaggac 868
                ||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||
Sbjct: 27604631 tgggccctgggcttctaccctaaggagatctccctgacctggcagcaggaggggcaggac 27604690

                                                                            
Query: 869      cagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttccagaag 928
                |||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 27604691 cagacccaggacatggagctcgtggagaccaggccttcaggggatgggaccttccagaag 27604750

                                                                            
Query: 929      tgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcac 988
                ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 27604751 tgggcggccctggtggtgccttctggagaggagcagagctacacctgccaggtgcagcac 27604810

                                                  
Query: 989      gagggcctgcaggagcccctcaccctgagatggg 1022
                ||||||||||||||||||||||||||||||||||
Sbjct: 27604811 gagggcctgcaggagcccctcaccctgagatggg 27604844



 Score =  345 bits (174), Expect = 4e-92
 Identities = 174/174 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1        aaggcaccaccccgctggggagctgcagcagaaccagctctctcctcgctgtgtccctca 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26684657 aaggcaccaccccgctggggagctgcagcagaaccagctctctcctcgctgtgtccctca 26684598

                                                                            
Query: 61       gccgcccggttatgcccgggaaggttgggacccagtcacagcagctgaggcgatgtggtg 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26684597 gccgcccggttatgcccgggaaggttgggacccagtcacagcagctgaggcgatgtggtg 26684538

                                                                      
Query: 121      ggctcccgtcctcttacactccttcctgagctctctgcaggagacccgagcccg 174
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26684537 ggctcccgtcctcttacactccttcctgagctctctgcaggagacccgagcccg 26684484



 Score =  303 bits (153), Expect = 1e-79
 Identities = 203/217 (93%), Gaps = 2/217 (0%)
 Strand = Plus / Plus

                                                                            
Query: 1215     agtgtgagacagctgccttgtggggactaagtgttacgagattcgtttacatcccacttt 1274
                |||||||||||||||||||||||||||| ||||  || ||||| ||| || |||||||||
Sbjct: 24604646 agtgtgagacagctgccttgtggggactgagtgacac-agatttgttcacgtcccacttt 24604704

                                                                            
Query: 1275     gtgacttcagatcccctgactcctgtttctgcagcagcatttgagtgtgtctgtgtccct 1334
                |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 24604705 gtgacttcagatcccctgactcctgtttctgcagcagcatttgaatgtgtctgtgtccct 24604764

                                                                            
Query: 1335     atgagcatcatgagagggaggtggggaccctggcccagctctgtcccccacgtcccctcc 1394
                ||||||||| ||||| ||||||||||||||||||||||  ||| ||||||||||||||||
Sbjct: 24604765 atgagcatcctgaga-ggaggtggggaccctggcccagtcctgccccccacgtcccctcc 24604823

                                                     
Query: 1395     tcaccctgacctgtgttctcgtccctgatcctctttc 1431
                |||||||||||||||||||| ||||||||||||||||
Sbjct: 24604824 tcaccctgacctgtgttctcttccctgatcctctttc 24604860



 Score =  278 bits (140), Expect = 8e-72
 Identities = 198/216 (91%), Gaps = 1/216 (0%)
 Strand = Plus / Minus

                                                                            
Query: 1215     agtgtgagacagctgccttgtggggactaagtgttacgagattcgtttacatcccacttt 1274
                |||||||||||||||||||||||||||| ||||  || ||||| ||| || |||||||||
Sbjct: 24704880 agtgtgagacagctgccttgtggggactgagtgacacaagatttgttcacgtcccacttt 24704821

                                                                            
Query: 1275     gtgacttcagatcccctgactcctgtttctgcagcagcatttgagtgtgtctgtgtccct 1334
                |||||||||||||||||||||||| |||||||||| |||| ||| ||||||||||| |||
Sbjct: 24704820 gtgacttcagatcccctgactcctatttctgcagctgcatctgaatgtgtctgtgttcct 24704761

                                                                            
Query: 1335     atgagcatcatgagagggaggtggggaccctggcccagctctgtcccccacgtcccctcc 1394
                ||| ||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 24704760 atgcgcatcatgaga-ggaggtggggacactggcccagccctgtcccccacgtcccctcc 24704702

                                                    
Query: 1395     tcaccctgacctgtgttctcgtccctgatcctcttt 1430
                |||||||||||||||||||| |||||||||| ||||
Sbjct: 24704701 tcaccctgacctgtgttctcttccctgatccacttt 24704666



 Score =  272 bits (137), Expect = 5e-70
 Identities = 198/217 (91%), Gaps = 1/217 (0%)
 Strand = Plus / Minus

                                                                            
Query: 1215     agtgtgagacagctgccttgtggggactaagtgttacgagattcgtttacatcccacttt 1274
                ||||||||||| |||||||||||||||| || |  || ||||| ||| ||||||||||||
Sbjct: 24748521 agtgtgagacaactgccttgtggggactgagggacacaagatttgttcacatcccacttt 24748462

                                                                            
Query: 1275     gtgacttcagatcccctgactcctgtttctgcagcagcatttgagtgtgtctgtgtccct 1334
                ||||||||||||||||||||||||||||||||||| |||| |||  | |||||||| |||
Sbjct: 24748461 gtgacttcagatcccctgactcctgtttctgcagctgcatctgaaagggtctgtgttcct 24748402

                                                                            
Query: 1335     atgagcatcatgagagggaggtggggaccctggcccagctctgtcccccacgtcccctcc 1394
                ||||||||| ||||| ||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 24748401 atgagcatcctgaga-ggaggtggggaccctggcccagccctgccccccacgtcccctcc 24748343

                                                     
Query: 1395     tcaccctgacctgtgttctcgtccctgatcctctttc 1431
                |||||||||||||||||||| ||||||||||||||||
Sbjct: 24748342 tcaccctgacctgtgttctcttccctgatcctctttc 24748306



 Score =  232 bits (117), Expect = 4e-58
 Identities = 193/217 (88%), Gaps = 1/217 (0%)
 Strand = Plus / Minus

                                                                            
Query: 1215     agtgtgagacagctgccttgtggggactaagtgttacgagattcgtttacatcccacttt 1274
                ||||||||| ||||||||||| |||||| || |  || ||||| ||| || |||||||||
Sbjct: 24721089 agtgtgagagagctgccttgtagggactgagggacacaagatttgttcacgtcccacttt 24721030

                                                                            
Query: 1275     gtgacttcagatcccctgactcctgtttctgcagcagcatttgagtgtgtctgtgtccct 1334
                |||||| ||||||||||||||| ||||||||||||||||| |||  |||||||||| |||
Sbjct: 24721029 gtgactccagatcccctgactcttgtttctgcagcagcatctgaaagtgtctgtgttcct 24720970

                                                                            
Query: 1335     atgagcatcatgagagggaggtggggaccctggcccagctctgtcccccacgtcccctcc 1394
                |||||||||||||||  |||||||||||||||||||||  ||| |||||| ||||||| |
Sbjct: 24720969 atgagcatcatgaga-agaggtggggaccctggcccagtcctgccccccatgtccccttc 24720911

                                                     
Query: 1395     tcaccctgacctgtgttctcgtccctgatcctctttc 1431
                |||||||||||||||||||| ||||||||||||||||
Sbjct: 24720910 tcaccctgacctgtgttctcttccctgatcctctttc 24720874



 Score =  224 bits (113), Expect = 1e-55
 Identities = 192/217 (88%), Gaps = 1/217 (0%)
 Strand = Plus / Minus

                                                                            
Query: 1215     agtgtgagacagctgccttgtggggactaagtgttacgagattcgtttacatcccacttt 1274
                ||||||||||||||||||||||||||||||| |  || ||||| ||| || |||||||||
Sbjct: 24642186 agtgtgagacagctgccttgtggggactaagggacacaagatttgttcacgtcccacttt 24642127

                                                                            
Query: 1275     gtgacttcagatcccctgactcctgtttctgcagcagcatttgagtgtgtctgtgtccct 1334
                ||||||||||| |||||||||||| |||||||||| || | |||  | |||||||| |||
Sbjct: 24642126 gtgacttcagaccccctgactcctatttctgcagctgcctctgaaagggtctgtgttcct 24642067

                                                                            
Query: 1335     atgagcatcatgagagggaggtggggaccctggcccagctctgtcccccacgtcccctcc 1394
                ||||||||| ||||| ||||||||||||||||||||||| ||| |||||| |||||||| 
Sbjct: 24642066 atgagcatcctgaga-ggaggtggggaccctggcccagccctgccccccatgtcccctct 24642008

                                                     
Query: 1395     tcaccctgacctgtgttctcgtccctgatcctctttc 1431
                |||||||||||||||||||| | |||||||| |||||
Sbjct: 24642007 tcaccctgacctgtgttctctttcctgatccactttc 24641971



 Score =  222 bits (112), Expect = 4e-55
 Identities = 191/216 (88%), Gaps = 1/216 (0%)
 Strand = Plus / Minus

                                                                            
Query: 1215     agtgtgagacagctgccttgtggggactaagtgttacgagattcgtttacatcccacttt 1274
                |||||||||||||||||||||||||||| || |  || ||||| ||| || |||||||||
Sbjct: 24655959 agtgtgagacagctgccttgtggggactgagggacacaagatttgttcacgtcccacttt 24655900

                                                                            
Query: 1275     gtgacttcagatcccctgactcctgtttctgcagcagcatttgagtgtgtctgtgtccct 1334
                ||||||||||||||||||||||||||||||||||| || | |||  ||||||||||  ||
Sbjct: 24655899 gtgacttcagatcccctgactcctgtttctgcagctgcctctgaaagtgtctgtgtttct 24655840

                                                                            
Query: 1335     atgagcatcatgagagggaggtggggaccctggcccagctctgtcccccacgtcccctcc 1394
                ||||||||||||||| | ||||||| || |||||| | | ||||||||||| ||||||||
Sbjct: 24655839 atgagcatcatgaga-gtaggtgggaacactggcctaaccctgtcccccacatcccctcc 24655781

                                                    
Query: 1395     tcaccctgacctgtgttctcgtccctgatcctcttt 1430
                |||||||||||||||||||| |||||||||| ||||
Sbjct: 24655780 tcaccctgacctgtgttctcttccctgatccacttt 24655745



 Score =  172 bits (87), Expect = 3e-40
 Identities = 184/217 (84%), Gaps = 12/217 (5%)
 Strand = Plus / Minus

                                                                            
Query: 1215     agtgtgagacagctgccttgtggggactaagtgttacgagattcgtttacatcccacttt 1274
                |||||||||||||||||||||||| ||| || |  || ||||| ||| || |||||||||
Sbjct: 24684019 agtgtgagacagctgccttgtgggaactgagggacacaagatttgttcacgtcccacttt 24683960

                                                                            
Query: 1275     gtgacttcagatcccctgactcctgtttctgcagcagcatttgagtgtgtctgtgtccct 1334
                |||| | |||||||||||||||||||||||||||| || | |||  | |||||||| |||
Sbjct: 24683959 gtgaatccagatcccctgactcctgtttctgcagctgcctctgaaagggtctgtgttcct 24683900

                                                                            
Query: 1335     atgagcatcatgagagggaggtggggaccctggcccagctctgtcccccacgtcccctcc 1394
                ||||||||| ||||| |||||||||||||||||           ||||||||||||||||
Sbjct: 24683899 atgagcatcctgaga-ggaggtggggaccctgg-----------cccccacgtcccctcc 24683852

                                                     
Query: 1395     tcaccctgacctgtgttctcgtccctgatcctctttc 1431
                |||||||||||||||||||| ||| ||||||||||||
Sbjct: 24683851 tcaccctgacctgtgttctcttccatgatcctctttc 24683815



 Score =  163 bits (82), Expect = 3e-37
 Identities = 107/114 (93%), Gaps = 1/114 (0%)
 Strand = Plus / Minus

                                                                            
Query: 1022     gaacctcctcagccccccgtccc-atcgtgggcatctttgttggcctggttctcgtcctg 1080
                |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 26675481 gaacctccacagccccccgtccccatcgtgggcatctttgttggcctggttctcgtcctg 26675422

                                                                      
Query: 1081     gtcgctggaaccatggtggctggagttatgagctgggagaagaagcgctcaggt 1134
                ||||||||| ||||||||||||||||| ||| ||||  ||||||||||||||||
Sbjct: 26675421 gtcgctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 26675368



 Score =  149 bits (75), Expect = 5e-33
 Identities = 103/111 (92%), Gaps = 1/111 (0%)
 Strand = Plus / Plus

                                                                            
Query: 1025     cctcctcagccccccgtccc-atcgtgggcatctttgttggcctggttctcgtcctggtc 1083
                ||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 24603750 cctcctcagccccccatccccatcgtgggcatcattgttggcctggttctcgtcctggtc 24603809

                                                                   
Query: 1084     gctggaaccatggtggctggagttatgagctgggagaagaagcgctcaggt 1134
                |||||| ||||||||||||||||| ||| ||||  ||||||||||||||||
Sbjct: 24603810 gctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 24603860



 Score =  149 bits (75), Expect = 5e-33
 Identities = 103/111 (92%), Gaps = 1/111 (0%)
 Strand = Plus / Minus

                                                                            
Query: 1025     cctcctcagccccccgtccc-atcgtgggcatctttgttggcctggttctcgtcctggtc 1083
                |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 24749448 cctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctggtc 24749389

                                                                   
Query: 1084     gctggaaccatggtggctggagttatgagctgggagaagaagcgctcaggt 1134
                |||||| || |||||||||||||| ||| ||||  ||||||||||||||||
Sbjct: 24749388 gctggagccgtggtggctggagttgtgatctggaggaagaagcgctcaggt 24749338



 Score =  133 bits (67), Expect = 3e-28
 Identities = 101/111 (90%), Gaps = 1/111 (0%)
 Strand = Plus / Minus

                                                                            
Query: 1025     cctcctcagccccccgtccc-atcgtgggcatctttgttggcctggttctcgtcctggtc 1083
                |||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||| 
Sbjct: 24643098 cctcctcagccccccgtccccatcgtgggcatcactgttggcctggttctcgtcctggtt 24643039

                                                                   
Query: 1084     gctggaaccatggtggctggagttatgagctgggagaagaagcgctcaggt 1134
                |||||| || |||||||||||||| ||| ||||  ||||||||||||||||
Sbjct: 24643038 gctggagccgtggtggctggagttgtgatctggaggaagaagcgctcaggt 24642988



 Score =  133 bits (67), Expect = 3e-28
 Identities = 101/111 (90%), Gaps = 1/111 (0%)
 Strand = Plus / Plus

                                                                            
Query: 1025     cctcctcagccccccgtccc-atcgtgggcatctttgttggcctggttctcgtcctggtc 1083
                |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 27616461 cctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctggtc 27616520

                                                                   
Query: 1084     gctggaaccatggtggctggagttatgagctgggagaagaagcgctcaggt 1134
                |||||| || ||||| |||||||| ||| ||||  ||||||| ||||||||
Sbjct: 27616521 gctggagccgtggtgactggagttgtgatctggaggaagaagtgctcaggt 27616571



 Score =  125 bits (63), Expect = 7e-26
 Identities = 97/107 (90%), Gaps = 1/107 (0%)
 Strand = Plus / Minus

                                                                            
Query: 1029     ctcagccccccgtccc-atcgtgggcatctttgttggcctggttctcgtcctggtcgctg 1087
                |||||||||||||||| ||||||||||||  ||||||||||||||| |||||||||||||
Sbjct: 24721998 ctcagccccccgtccccatcgtgggcatcactgttggcctggttctggtcctggtcgctg 24721939

                                                               
Query: 1088     gaaccatggtggctggagttatgagctgggagaagaagcgctcaggt 1134
                || ||||||||||||||| | ||| ||||  ||||||||||||||||
Sbjct: 24721938 gagccatggtggctggagctgtgatctggaggaagaagcgctcaggt 24721892



 Score =  117 bits (59), Expect = 2e-23
 Identities = 96/107 (89%), Gaps = 1/107 (0%)
 Strand = Plus / Minus

                                                                            
Query: 1029     ctcagccccccgtccc-atcgtgggcatctttgttggcctggttctcgtcctggtcgctg 1087
                |||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 24684930 ctcagccccccgtccccatcgtgggcatcattgttggcctggttctggtcctggtcgctg 24684871

                                                               
Query: 1088     gaaccatggtggctggagttatgagctgggagaagaagcgctcaggt 1134
                || |  |||||||||||||| ||| ||||  ||||| ||||||||||
Sbjct: 24684870 gagctgtggtggctggagttgtgatctggaggaagacgcgctcaggt 24684824



 Score =  117 bits (59), Expect = 2e-23
 Identities = 96/107 (89%), Gaps = 1/107 (0%)
 Strand = Plus / Minus

                                                                            
Query: 1029     ctcagccccccgtccc-atcgtgggcatctttgttggcctggttctcgtcctggtcgctg 1087
                |||||||||||||||| || |||||||||  ||||||||||||||| |||||||||||||
Sbjct: 24705782 ctcagccccccgtccccatggtgggcatcactgttggcctggttcttgtcctggtcgctg 24705723

                                                               
Query: 1088     gaaccatggtggctggagttatgagctgggagaagaagcgctcaggt 1134
                || ||||||||||||||||| ||| ||||  ||||||| ||||||||
Sbjct: 24705722 gagccatggtggctggagttgtgatctggaggaagaagtgctcaggt 24705676



 Score = 99.6 bits (50), Expect = 4e-18
 Identities = 53/54 (98%)
 Strand = Plus / Minus

                                                                      
Query: 1163     caggcagggacagtacccagagctctggtgtgtccctcatcaaggatcctagag 1216
                |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 26674772 caggcagggacagtgcccagagctctggtgtgtccctcatcaaggatcctagag 26674719



 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 93/107 (86%), Gaps = 1/107 (0%)
 Strand = Plus / Minus

                                                                            
Query: 1029     ctcagccccccgtccc-atcgtgggcatctttgttggcctggttctcgtcctggtcgctg 1087
                |||||||||| ||||| || |||| |||| ||||||||||||| || ||||||||| |||
Sbjct: 24656871 ctcagccccctgtccccattgtggacatcattgttggcctggtactggtcctggtctctg 24656812

                                                               
Query: 1088     gaaccatggtggctggagttatgagctgggagaagaagcgctcaggt 1134
                || |||||||| |||||||| ||| ||||  ||||||||||||||||
Sbjct: 24656811 gagccatggtgactggagttgtgatctggaggaagaagcgctcaggt 24656765



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 39/39 (100%)
 Strand = Plus / Plus

                                                       
Query: 1128     ctcaggtgaaaaaggagggagctacactcaggctgcagg 1166
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 24604269 ctcaggtgaaaaaggagggagctacactcaggctgcagg 24604307



 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 37/37 (100%)
 Strand = Plus / Minus

                                                     
Query: 1130     caggtgaaaaaggagggagctacactcaggctgcagg 1166
                |||||||||||||||||||||||||||||||||||||
Sbjct: 24642561 caggtgaaaaaggagggagctacactcaggctgcagg 24642525



 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 37/37 (100%)
 Strand = Plus / Minus

                                                     
Query: 1130     caggtgaaaaaggagggagctacactcaggctgcagg 1166
                |||||||||||||||||||||||||||||||||||||
Sbjct: 24684394 caggtgaaaaaggagggagctacactcaggctgcagg 24684358



 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 37/37 (100%)
 Strand = Plus / Minus

                                                     
Query: 1130     caggtgaaaaaggagggagctacactcaggctgcagg 1166
                |||||||||||||||||||||||||||||||||||||
Sbjct: 24748893 caggtgaaaaaggagggagctacactcaggctgcagg 24748857



 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                      
Query: 1163     caggcagggacagtacccagagctctggtgtgtccctcatcaaggatcctagag 1216
                ||||||| |||||| ||||| |||||| ||||||||||| ||||||||||||||
Sbjct: 24642398 caggcagtgacagtgcccagggctctgatgtgtccctcaccaaggatcctagag 24642345



 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 33/33 (100%)
 Strand = Plus / Minus

                                                 
Query: 1134     tgaaaaaggagggagctacactcaggctgcagg 1166
                |||||||||||||||||||||||||||||||||
Sbjct: 26674930 tgaaaaaggagggagctacactcaggctgcagg 26674898



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 32/32 (100%)
 Strand = Plus / Minus

                                                
Query: 1130     caggtgaaaaaggagggagctacactcaggct 1161
                ||||||||||||||||||||||||||||||||
Sbjct: 24721463 caggtgaaaaaggagggagctacactcaggct 24721432


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 42,138,935
Number of extensions: 354
Number of successful extensions: 354
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 340
Number of HSP's successfully gapped: 40
Length of query: 1436
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1415
Effective length of database: 2,808,413,156
Effective search space: 3973904615740
Effective search space used: 3973904615740
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)