Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001768
(1725 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001040070.1| receptor expression-enhancing protein 5 [Bos... 364 e-100
Alignment gi|NP_001033224.1| receptor expression-enhancing protein 6 [Bos... 249 5e-66
Alignment gi|NP_001029705.1| receptor expression-enhancing protein 4 [Bos... 107 3e-23
Alignment gi|NP_001039790.1| receptor expression-enhancing protein 2 [Bos... 101 2e-21
Alignment gi|NP_001075930.1| receptor expression-enhancing protein 1 [Bos... 98 3e-20
Alignment gi|NP_001095431.1| receptor expression-enhancing protein 3 [Bos... 91 2e-18
>ref|NP_001040070.1| receptor expression-enhancing protein 5 [Bos taurus].
Length = 189
Score = 364 bits (934), Expect = e-100
Identities = 176/189 (93%), Positives = 185/189 (97%)
Frame = +2
Query: 80 MSAAMRQRFDQFLHQKNYLTDILAKIEAKTGVNRSYIALGVIGLVALYLVFGYGASLLCN 259
MSAAMRQRFDQFLHQKN +TD+LAK EAKTGVNRS+IALGVIGL+ALYLVFGYGASLLCN
Sbjct: 1 MSAAMRQRFDQFLHQKNCMTDLLAKTEAKTGVNRSFIALGVIGLLALYLVFGYGASLLCN 60
Query: 260 LIGFGYPAYVSIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDLFLSWFPFYYMLKCGF 439
LIGFGYPAYVSIKAIESPNKEDDTQWLTYWVVYGVFSI EFFSDLFLSWFPFYYMLKCGF
Sbjct: 61 LIGFGYPAYVSIKAIESPNKEDDTQWLTYWVVYGVFSIVEFFSDLFLSWFPFYYMLKCGF 120
Query: 440 LLWCMAPSPANGADLLYQRIIRPFFLKHESQVDNVVSDLKDKAKETADAITKEAKKAAVN 619
LLWCMAPSPANGADLLY+RIIRPFFLKHESQVDNVV+DLKDKAKETAD I+KEA+KAAV+
Sbjct: 121 LLWCMAPSPANGADLLYKRIIRPFFLKHESQVDNVVNDLKDKAKETADTISKEARKAAVS 180
Query: 620 LLGEEKKST 646
LLGEEKKST
Sbjct: 181 LLGEEKKST 189
>ref|NP_001033224.1| receptor expression-enhancing protein 6 [Bos taurus].
Length = 185
Score = 249 bits (636), Expect = 5e-66
Identities = 116/182 (63%), Positives = 143/182 (78%)
Frame = +2
Query: 92 MRQRFDQFLHQKNYLTDILAKIEAKTGVNRSYIALGVIGLVALYLVFGYGASLLCNLIGF 271
+RQRF++FL Q+N T+ L +EAKTGV++ Y+A G L++LYL+FGYGA LLC+LIGF
Sbjct: 4 LRQRFERFLEQRNLATEALGALEAKTGVDKRYLATGAATLLSLYLLFGYGAPLLCSLIGF 63
Query: 272 GYPAYVSIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDLFLSWFPFYYMLKCGFLLWC 451
YPAY SIKAIESP+KEDDT WLTYWVVYG+F +AEFFSDL LSWFPFYY KC FLL+C
Sbjct: 64 AYPAYASIKAIESPSKEDDTVWLTYWVVYGLFGLAEFFSDLLLSWFPFYYAGKCAFLLFC 123
Query: 452 MAPSPANGADLLYQRIIRPFFLKHESQVDNVVSDLKDKAKETADAITKEAKKAAVNLLGE 631
MAP P NGA +LY RIIRP FLKH VD++VSD+ +A + A +TK+A K +VN L +
Sbjct: 124 MAPGPWNGAHMLYHRIIRPLFLKHHEAVDSIVSDISGRALDVAAGMTKDAGKVSVNQLQK 183
Query: 632 EK 637
K
Sbjct: 184 AK 185
>ref|NP_001029705.1| receptor expression-enhancing protein 4 [Bos taurus].
Length = 257
Score = 107 bits (268), Expect = 3e-23
Identities = 45/128 (35%), Positives = 77/128 (60%), Gaps = 4/128 (3%)
Frame = +2
Query: 248 LLCNLI----GFGYPAYVSIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDLFLSWFPF 415
++C L+ G YPAY S KA+++ N + +W+ YW+V+ +F E F+D+F+SWFPF
Sbjct: 5 MICRLVVLVFGMLYPAYASYKAVKTKNIREYVRWMMYWIVFALFMAVETFTDIFISWFPF 64
Query: 416 YYMLKCGFLLWCMAPSPANGADLLYQRIIRPFFLKHESQVDNVVSDLKDKAKETADAITK 595
YY +K F+LW ++P GA +LY++ + P +HE ++D + K+++ ET + K
Sbjct: 65 YYEIKMAFVLWLLSPY-TRGASMLYRKFVHPSLSRHEKEIDTYIVQAKERSYETVLSFGK 123
Query: 596 EAKKAAVN 619
A +
Sbjct: 124 RGLNIAAS 131
>ref|NP_001039790.1| receptor expression-enhancing protein 2 [Bos taurus].
Length = 254
Score = 101 bits (251), Expect = 2e-21
Identities = 43/124 (34%), Positives = 74/124 (59%)
Frame = +2
Query: 248 LLCNLIGFGYPAYVSIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDLFLSWFPFYYML 427
L+ + G YPAY S KA+++ N ++ +W+ YW+V+ F+ AE +D+ LSWFPFY+ L
Sbjct: 9 LVVLIFGTLYPAYSSYKAVKTKNVKEYVKWMMYWIVFAFFTTAETLTDIVLSWFPFYFEL 68
Query: 428 KCGFLLWCMAPSPANGADLLYQRIIRPFFLKHESQVDNVVSDLKDKAKETADAITKEAKK 607
K F++W ++P G+ +LY++ + P E ++D ++ +DK+ ET + K
Sbjct: 69 KIAFVIWLLSPY-TKGSSVLYRKFVHPTLSNKEKEIDEYITQARDKSYETMMRVGKRGLN 127
Query: 608 AAVN 619
A N
Sbjct: 128 LAAN 131
>ref|NP_001075930.1| receptor expression-enhancing protein 1 [Bos taurus].
Length = 201
Score = 97.8 bits (242), Expect = 3e-20
Identities = 40/107 (37%), Positives = 69/107 (64%)
Frame = +2
Query: 248 LLCNLIGFGYPAYVSIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDLFLSWFPFYYML 427
L+ + G YPAY S KA++S + ++ +W+ YW+++ +F+ AE F+D+FL WFPFYY L
Sbjct: 9 LVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLCWFPFYYEL 68
Query: 428 KCGFLLWCMAPSPANGADLLYQRIIRPFFLKHESQVDNVVSDLKDKA 568
K F+ W ++P G+ LLY++ + P E ++D+ + KD++
Sbjct: 69 KIAFVAWLLSPY-TKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRS 114
>ref|NP_001095431.1| receptor expression-enhancing protein 3 [Bos taurus].
Length = 255
Score = 91.3 bits (225), Expect = 2e-18
Identities = 35/106 (33%), Positives = 66/106 (62%)
Frame = +2
Query: 260 LIGFGYPAYVSIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDLFLSWFPFYYMLKCGF 439
+ G YPAY S KA+++ N ++ +W+ YW+V+ ++++ E +D ++WFP YY LK F
Sbjct: 13 VFGMLYPAYYSYKAVKTKNVKEYVRWMMYWIVFALYTVIETVADQTVAWFPLYYELKIAF 72
Query: 440 LLWCMAPSPANGADLLYQRIIRPFFLKHESQVDNVVSDLKDKAKET 577
++W ++P GA L+Y++ + P E ++D+ + K++ ET
Sbjct: 73 VIWLLSPY-TRGASLIYRKFLHPLLSSKEREIDDYIVQAKERGYET 117
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 63,887,205
Number of extensions: 1686579
Number of successful extensions: 4700
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4695
Number of HSP's successfully gapped: 6
Length of query: 575
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 467
Effective length of database: 14,107,870
Effective search space: 6588375290
Effective search space used: 6588375290
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001768
(1725 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536283.2| PREDICTED: similar to Polyposis locus protein 1... 347 3e-95
Alignment gi|XP_855124.1| PREDICTED: similar to polyposis locus protein 1... 228 1e-59
Alignment gi|XP_543255.2| PREDICTED: similar to receptor expression enhan... 108 2e-23
Alignment gi|XP_531921.2| PREDICTED: similar to jumonji domain containing... 101 3e-21
Alignment gi|XP_854822.1| PREDICTED: similar to receptor expression enhan... 97 4e-20
Alignment gi|XP_536364.1| PREDICTED: similar to receptor expression enhan... 91 3e-18
>ref|XP_536283.2| PREDICTED: similar to Polyposis locus protein 1 (TB2 protein)
[Canis familiaris].
Length = 514
Score = 347 bits (889), Expect = 3e-95
Identities = 170/219 (77%), Positives = 191/219 (87%), Gaps = 5/219 (2%)
Frame = +2
Query: 5 PPPSSPL---CGHPVLEAAPGGGATVP--AMSAAMRQRFDQFLHQKNYLTDILAKIEAKT 169
P PS PL G P ++PGG + AMSAA+RQRFD+FL +KN +TD+LA +EA++
Sbjct: 296 PRPSPPLPSALGGPRSRSSPGGAQVLASLAMSAAVRQRFDRFLQEKNCMTDLLAILEARS 355
Query: 170 GVNRSYIALGVIGLVALYLVFGYGASLLCNLIGFGYPAYVSIKAIESPNKEDDTQWLTYW 349
GVNR YIALG +GL+ALYLVFGYGASLLCNLIGFGYPAYVSIKAIESPNKEDDTQWLTYW
Sbjct: 356 GVNRRYIALGAVGLLALYLVFGYGASLLCNLIGFGYPAYVSIKAIESPNKEDDTQWLTYW 415
Query: 350 VVYGVFSIAEFFSDLFLSWFPFYYMLKCGFLLWCMAPSPANGADLLYQRIIRPFFLKHES 529
VVYGVFSIAEFFSDLFLSW PFYYMLKCGFLLWCMAPSP+NGA+LLY+R+I+P FLKHES
Sbjct: 416 VVYGVFSIAEFFSDLFLSWVPFYYMLKCGFLLWCMAPSPSNGAELLYRRVIQPVFLKHES 475
Query: 530 QVDNVVSDLKDKAKETADAITKEAKKAAVNLLGEEKKST 646
QVD +V+D KDKAKET D ITKEAKKAAV LLG+EKKST
Sbjct: 476 QVDTMVNDFKDKAKETVDTITKEAKKAAVTLLGDEKKST 514
>ref|XP_855124.1| PREDICTED: similar to polyposis locus protein 1-like 1 [Canis
familiaris].
Length = 414
Score = 228 bits (581), Expect = 1e-59
Identities = 105/167 (62%), Positives = 129/167 (77%)
Frame = +2
Query: 98 QRFDQFLHQKNYLTDILAKIEAKTGVNRSYIALGVIGLVALYLVFGYGASLLCNLIGFGY 277
+RF+ L Q+N +T+ L +EAKTGV++ Y+A G L++LYL+FG+GASLLCN+IGF Y
Sbjct: 2 RRFEHLLEQRNLVTEALGALEAKTGVDKRYLAAGAATLLSLYLLFGFGASLLCNVIGFVY 61
Query: 278 PAYVSIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDLFLSWFPFYYMLKCGFLLWCMA 457
PAY SIKAIESP+KEDDT WLTYWVVYG+F +AEFFSDL LSWFPFYY KC FLL+CM
Sbjct: 62 PAYASIKAIESPSKEDDTVWLTYWVVYGLFGLAEFFSDLLLSWFPFYYAGKCAFLLFCMI 121
Query: 458 PSPANGADLLYQRIIRPFFLKHESQVDNVVSDLKDKAKETADAITKE 598
P P NGA +LY R IRP FLKH VD+VV D +A + A IT++
Sbjct: 122 PGPWNGAHMLYHRAIRPLFLKHHEAVDSVVRDFSGRALDVAAGITRD 168
>ref|XP_543255.2| PREDICTED: similar to receptor expression enhancing protein 4
[Canis familiaris].
Length = 413
Score = 108 bits (269), Expect = 2e-23
Identities = 46/128 (35%), Positives = 77/128 (60%), Gaps = 4/128 (3%)
Frame = +2
Query: 248 LLCNLI----GFGYPAYVSIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDLFLSWFPF 415
++C L+ G YPAY S KA+++ N + +W+ YW+V+ +F E F+D+F+SWFPF
Sbjct: 161 MICRLVVLVFGMLYPAYASYKAVKTKNIREYVRWMMYWIVFALFMAVETFTDIFISWFPF 220
Query: 416 YYMLKCGFLLWCMAPSPANGADLLYQRIIRPFFLKHESQVDNVVSDLKDKAKETADAITK 595
YY +K F+LW ++P GA LLY++ + P +HE ++D + K+++ ET + K
Sbjct: 221 YYEIKMAFVLWLLSPY-TKGASLLYRKFVHPSLSRHEKEIDTCIVQAKERSYETMLSFGK 279
Query: 596 EAKKAAVN 619
A +
Sbjct: 280 RGLNIAAS 287
>ref|XP_531921.2| PREDICTED: similar to jumonji domain containing 1B [Canis
familiaris].
Length = 2038
Score = 101 bits (251), Expect = 3e-21
Identities = 43/124 (34%), Positives = 74/124 (59%)
Frame = +2
Query: 248 LLCNLIGFGYPAYVSIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDLFLSWFPFYYML 427
L+ + G YPAY S KA+++ N ++ +W+ YW+V+ F+ AE +D+ LSWFPFY+ L
Sbjct: 1793 LVVLIFGTLYPAYSSYKAVKTKNVKEYVKWMMYWIVFAFFTTAETLTDIVLSWFPFYFEL 1852
Query: 428 KCGFLLWCMAPSPANGADLLYQRIIRPFFLKHESQVDNVVSDLKDKAKETADAITKEAKK 607
K F++W ++P G+ +LY++ + P E ++D ++ +DK+ ET + K
Sbjct: 1853 KIAFVIWLLSPY-TKGSSVLYRKFVHPTLSNKEKEIDEYITQARDKSYETMMRVGKRGLN 1911
Query: 608 AAVN 619
A N
Sbjct: 1912 LAAN 1915
>ref|XP_854822.1| PREDICTED: similar to receptor expression enhancing protein 1
[Canis familiaris].
Length = 301
Score = 97.4 bits (241), Expect = 4e-20
Identities = 39/103 (37%), Positives = 67/103 (65%)
Frame = +2
Query: 260 LIGFGYPAYVSIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDLFLSWFPFYYMLKCGF 439
+ G YPAY S KA++S + ++ +W+ YW+++ +F+ AE F+D+FL WFPFYY LK F
Sbjct: 113 IFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLCWFPFYYELKIAF 172
Query: 440 LLWCMAPSPANGADLLYQRIIRPFFLKHESQVDNVVSDLKDKA 568
+ W ++P G+ LLY++ + P E ++D+ + KD++
Sbjct: 173 VAWLLSPY-TKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRS 214
>ref|XP_536364.1| PREDICTED: similar to receptor expression enhancing protein 3
[Canis familiaris].
Length = 274
Score = 91.3 bits (225), Expect = 3e-18
Identities = 35/106 (33%), Positives = 66/106 (62%)
Frame = +2
Query: 260 LIGFGYPAYVSIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDLFLSWFPFYYMLKCGF 439
+ G YPAY S KA+++ N ++ +W+ YW+V+ ++++ E +D ++WFP YY LK F
Sbjct: 32 VFGMLYPAYYSYKAVKTKNVKEYVRWMMYWIVFALYTVIETITDQTVAWFPLYYELKIAF 91
Query: 440 LLWCMAPSPANGADLLYQRIIRPFFLKHESQVDNVVSDLKDKAKET 577
++W ++P GA L+Y++ + P E ++D+ + K++ ET
Sbjct: 92 VVWLLSPY-TKGASLIYRKFLHPLLSSKEREIDDYIVQAKERGYET 136
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 66,390,233
Number of extensions: 1719352
Number of successful extensions: 4679
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4670
Number of HSP's successfully gapped: 6
Length of query: 575
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 467
Effective length of database: 15,274,216
Effective search space: 7133058872
Effective search space used: 7133058872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001768
(1725 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005660.4| receptor expression-enhancing protein 5 [Homo s... 361 1e-99
Alignment gi|NP_612402.1| receptor expression-enhancing protein 6 [Homo s... 238 1e-62
Alignment gi|NP_079508.2| receptor expression-enhancing protein 4 [Homo s... 103 4e-22
Alignment gi|NP_057690.2| receptor expression-enhancing protein 2 [Homo s... 101 2e-21
Alignment gi|NP_075063.1| receptor expression-enhancing protein 1 isoform... 98 3e-20
Alignment gi|NP_001158202.1| receptor expression-enhancing protein 1 isof... 97 4e-20
Alignment gi|NP_001001330.1| receptor expression-enhancing protein 3 [Hom... 91 3e-18
Alignment gi|NP_001158203.1| receptor expression-enhancing protein 1 isof... 81 3e-15
Alignment gi|NP_001158204.1| receptor expression-enhancing protein 1 isof... 61 4e-09
>ref|NP_005660.4| receptor expression-enhancing protein 5 [Homo sapiens].
Length = 189
Score = 361 bits (927), Expect = 1e-99
Identities = 172/189 (91%), Positives = 186/189 (98%)
Frame = +2
Query: 80 MSAAMRQRFDQFLHQKNYLTDILAKIEAKTGVNRSYIALGVIGLVALYLVFGYGASLLCN 259
MSAAMR+RFD+FLH+KN +TD+LAK+EAKTGVNRS+IALGVIGLVALYLVFGYGASLLCN
Sbjct: 1 MSAAMRERFDRFLHEKNCMTDLLAKLEAKTGVNRSFIALGVIGLVALYLVFGYGASLLCN 60
Query: 260 LIGFGYPAYVSIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDLFLSWFPFYYMLKCGF 439
LIGFGYPAY+SIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSD+FLSWFPFYYMLKCGF
Sbjct: 61 LIGFGYPAYISIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDIFLSWFPFYYMLKCGF 120
Query: 440 LLWCMAPSPANGADLLYQRIIRPFFLKHESQVDNVVSDLKDKAKETADAITKEAKKAAVN 619
LLWCMAPSP+NGA+LLY+RIIRPFFLKHESQ+D+VV DLKDKAKETADAITKEAKKA VN
Sbjct: 121 LLWCMAPSPSNGAELLYKRIIRPFFLKHESQMDSVVKDLKDKAKETADAITKEAKKATVN 180
Query: 620 LLGEEKKST 646
LLGEEKKST
Sbjct: 181 LLGEEKKST 189
>ref|NP_612402.1| receptor expression-enhancing protein 6 [Homo sapiens].
Length = 184
Score = 238 bits (608), Expect = 1e-62
Identities = 107/171 (62%), Positives = 136/171 (79%)
Frame = +2
Query: 92 MRQRFDQFLHQKNYLTDILAKIEAKTGVNRSYIALGVIGLVALYLVFGYGASLLCNLIGF 271
+RQR + FL Q+N +T++L +EAKTGV + Y+A G + L++LYL+FGYGASLLCNLIGF
Sbjct: 4 LRQRVEHFLEQRNLVTEVLGALEAKTGVEKRYLAAGAVTLLSLYLLFGYGASLLCNLIGF 63
Query: 272 GYPAYVSIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDLFLSWFPFYYMLKCGFLLWC 451
YPAY SIKAIESP+K+DDT WLTYWVVY +F +AEFFSDL LSWFPFYY+ KC FLL+C
Sbjct: 64 VYPAYASIKAIESPSKDDDTVWLTYWVVYALFGLAEFFSDLLLSWFPFYYVGKCAFLLFC 123
Query: 452 MAPSPANGADLLYQRIIRPFFLKHESQVDNVVSDLKDKAKETADAITKEAK 604
MAP P NGA +LYQR++RP FL+H VD +++DL +A + A IT+ K
Sbjct: 124 MAPRPWNGALMLYQRVVRPLFLRHHGAVDRIMNDLSGRALDAAAGITRNVK 174
>ref|NP_079508.2| receptor expression-enhancing protein 4 [Homo sapiens].
Length = 257
Score = 103 bits (258), Expect = 4e-22
Identities = 45/128 (35%), Positives = 76/128 (59%), Gaps = 4/128 (3%)
Frame = +2
Query: 248 LLCNLI----GFGYPAYVSIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDLFLSWFPF 415
++C L+ G PAY S KA+++ N + +W+ YW+V+ +F AE +D+F+SWFPF
Sbjct: 5 MICRLVVLVFGMLCPAYASYKAVKTKNIREYVRWMMYWIVFALFMAAEIVTDIFISWFPF 64
Query: 416 YYMLKCGFLLWCMAPSPANGADLLYQRIIRPFFLKHESQVDNVVSDLKDKAKETADAITK 595
YY +K F+LW ++P GA LLY++ + P +HE ++D + K+++ ET + K
Sbjct: 65 YYEIKMAFVLWLLSPY-TKGASLLYRKFVHPSLSRHEKEIDAYIVQAKERSYETVLSFGK 123
Query: 596 EAKKAAVN 619
A +
Sbjct: 124 RGLNIAAS 131
>ref|NP_057690.2| receptor expression-enhancing protein 2 [Homo sapiens].
Length = 252
Score = 101 bits (251), Expect = 2e-21
Identities = 43/124 (34%), Positives = 74/124 (59%)
Frame = +2
Query: 248 LLCNLIGFGYPAYVSIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDLFLSWFPFYYML 427
L+ + G YPAY S KA+++ N ++ +W+ YW+V+ F+ AE +D+ LSWFPFY+ L
Sbjct: 9 LVVLIFGTLYPAYSSYKAVKTKNVKEYVKWMMYWIVFAFFTTAETLTDIVLSWFPFYFEL 68
Query: 428 KCGFLLWCMAPSPANGADLLYQRIIRPFFLKHESQVDNVVSDLKDKAKETADAITKEAKK 607
K F++W ++P G+ +LY++ + P E ++D ++ +DK+ ET + K
Sbjct: 69 KIAFVIWLLSPY-TKGSSVLYRKFVHPTLSNKEKEIDEYITQARDKSYETMMRVGKRGLN 127
Query: 608 AAVN 619
A N
Sbjct: 128 LAAN 131
>ref|NP_075063.1| receptor expression-enhancing protein 1 isoform 2 [Homo sapiens].
Length = 201
Score = 97.8 bits (242), Expect = 3e-20
Identities = 40/107 (37%), Positives = 69/107 (64%)
Frame = +2
Query: 248 LLCNLIGFGYPAYVSIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDLFLSWFPFYYML 427
L+ + G YPAY S KA++S + ++ +W+ YW+++ +F+ AE F+D+FL WFPFYY L
Sbjct: 9 LVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLCWFPFYYEL 68
Query: 428 KCGFLLWCMAPSPANGADLLYQRIIRPFFLKHESQVDNVVSDLKDKA 568
K F+ W ++P G+ LLY++ + P E ++D+ + KD++
Sbjct: 69 KIAFVAWLLSPY-TKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRS 114
>ref|NP_001158202.1| receptor expression-enhancing protein 1 isoform 1 [Homo sapiens].
Length = 208
Score = 97.4 bits (241), Expect = 4e-20
Identities = 39/103 (37%), Positives = 67/103 (65%)
Frame = +2
Query: 260 LIGFGYPAYVSIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDLFLSWFPFYYMLKCGF 439
+ G YPAY S KA++S + ++ +W+ YW+++ +F+ AE F+D+FL WFPFYY LK F
Sbjct: 20 IFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLCWFPFYYELKIAF 79
Query: 440 LLWCMAPSPANGADLLYQRIIRPFFLKHESQVDNVVSDLKDKA 568
+ W ++P G+ LLY++ + P E ++D+ + KD++
Sbjct: 80 VAWLLSPY-TKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRS 121
>ref|NP_001001330.1| receptor expression-enhancing protein 3 [Homo sapiens].
Length = 255
Score = 91.3 bits (225), Expect = 3e-18
Identities = 35/106 (33%), Positives = 66/106 (62%)
Frame = +2
Query: 260 LIGFGYPAYVSIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDLFLSWFPFYYMLKCGF 439
+ G YPAY S KA+++ N ++ +W+ YW+V+ ++++ E +D ++WFP YY LK F
Sbjct: 13 VFGMLYPAYYSYKAVKTKNVKEYVRWMMYWIVFALYTVIETVADQTVAWFPLYYELKIAF 72
Query: 440 LLWCMAPSPANGADLLYQRIIRPFFLKHESQVDNVVSDLKDKAKET 577
++W ++P GA L+Y++ + P E ++D+ + K++ ET
Sbjct: 73 VIWLLSPY-TKGASLIYRKFLHPLLSSKEREIDDYIVQAKERGYET 117
>ref|NP_001158203.1| receptor expression-enhancing protein 1 isoform 3 [Homo sapiens].
Length = 174
Score = 80.9 bits (198), Expect = 3e-15
Identities = 30/79 (37%), Positives = 52/79 (65%)
Frame = +2
Query: 332 QWLTYWVVYGVFSIAEFFSDLFLSWFPFYYMLKCGFLLWCMAPSPANGADLLYQRIIRPF 511
+W+ YW+++ +F+ AE F+D+FL WFPFYY LK F+ W ++P G+ LLY++ + P
Sbjct: 10 KWMMYWIIFALFTTAETFTDIFLCWFPFYYELKIAFVAWLLSPY-TKGSSLLYRKFVHPT 68
Query: 512 FLKHESQVDNVVSDLKDKA 568
E ++D+ + KD++
Sbjct: 69 LSSKEKEIDDCLVQAKDRS 87
>ref|NP_001158204.1| receptor expression-enhancing protein 1 isoform 4 [Homo sapiens].
Length = 143
Score = 60.8 bits (146), Expect = 4e-09
Identities = 28/80 (35%), Positives = 45/80 (56%)
Frame = +2
Query: 248 LLCNLIGFGYPAYVSIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDLFLSWFPFYYML 427
L+ + G YPAY S KA++S + ++ +W+ YW+++ +F+ AE F+D+FL W Y
Sbjct: 9 LVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLCWDRVPYRR 68
Query: 428 KCGFLLWCMAPSPANGADLL 487
CG +P A LL
Sbjct: 69 DCGASACRTSPPSGETAPLL 88
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 65,478,770
Number of extensions: 1708833
Number of successful extensions: 4796
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4786
Number of HSP's successfully gapped: 9
Length of query: 575
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 467
Effective length of database: 14,737,052
Effective search space: 6882203284
Effective search space used: 6882203284
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001768
(1725 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031900.3| receptor expression-enhancing protein 5 [Mus mu... 353 2e-97
Alignment gi|NP_001191860.1| receptor expression-enhancing protein 6 isof... 231 1e-60
Alignment gi|NP_647453.1| receptor expression-enhancing protein 6 isoform... 229 5e-60
Alignment gi|NP_850919.1| receptor expression-enhancing protein 4 [Mus mu... 110 3e-24
Alignment gi|NP_001191843.1| receptor expression-enhancing protein 2 isof... 101 2e-21
Alignment gi|NP_659114.2| receptor expression-enhancing protein 2 isoform... 101 2e-21
Alignment gi|NP_848723.1| receptor expression-enhancing protein 1 [Mus mu... 98 2e-20
Alignment gi|NP_001191844.1| receptor expression-enhancing protein 3 isof... 92 1e-18
Alignment gi|NP_848721.1| receptor expression-enhancing protein 3 isoform... 92 1e-18
>ref|NP_031900.3| receptor expression-enhancing protein 5 [Mus musculus].
Length = 189
Score = 353 bits (907), Expect = 2e-97
Identities = 167/189 (88%), Positives = 184/189 (97%)
Frame = +2
Query: 80 MSAAMRQRFDQFLHQKNYLTDILAKIEAKTGVNRSYIALGVIGLVALYLVFGYGASLLCN 259
MSAAMR+RFD+FLH+KN +TD+LAK+EAKTGVNRS+IALGVIGLVALYLVFGYGASLLCN
Sbjct: 1 MSAAMRERFDRFLHEKNCMTDLLAKLEAKTGVNRSFIALGVIGLVALYLVFGYGASLLCN 60
Query: 260 LIGFGYPAYVSIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDLFLSWFPFYYMLKCGF 439
LIGFGYPAY+S+KAIESPNK+DDTQWLTYWVVYGVFSIAEFFSDLFLSWFPFYYMLKCGF
Sbjct: 61 LIGFGYPAYISMKAIESPNKDDDTQWLTYWVVYGVFSIAEFFSDLFLSWFPFYYMLKCGF 120
Query: 440 LLWCMAPSPANGADLLYQRIIRPFFLKHESQVDNVVSDLKDKAKETADAITKEAKKAAVN 619
LLWCMAPSPANGA++LY+RIIRP FLKHESQVD+VV D+KDKAKETADAI+KE KKA VN
Sbjct: 121 LLWCMAPSPANGAEMLYRRIIRPIFLKHESQVDSVVKDVKDKAKETADAISKEVKKATVN 180
Query: 620 LLGEEKKST 646
LLG+EKKST
Sbjct: 181 LLGDEKKST 189
>ref|NP_001191860.1| receptor expression-enhancing protein 6 isoform 2 [Mus musculus].
Length = 174
Score = 231 bits (590), Expect = 1e-60
Identities = 106/171 (61%), Positives = 130/171 (76%)
Frame = +2
Query: 92 MRQRFDQFLHQKNYLTDILAKIEAKTGVNRSYIALGVIGLVALYLVFGYGASLLCNLIGF 271
+RQRF++FL QKN T+ L +EA+TGV + Y+A G + L+ LYL+FGYGASLLCN+IGF
Sbjct: 4 LRQRFERFLEQKNVATEALGALEARTGVEKRYLAAGALALLGLYLLFGYGASLLCNVIGF 63
Query: 272 GYPAYVSIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDLFLSWFPFYYMLKCGFLLWC 451
YPAY S+KAIESP+KEDDT WLTYWVVY +F + EFFSDL L WFPFYY KC FLL+C
Sbjct: 64 VYPAYASVKAIESPSKEDDTVWLTYWVVYALFGLVEFFSDLLLFWFPFYYAGKCAFLLFC 123
Query: 452 MAPSPANGADLLYQRIIRPFFLKHESQVDNVVSDLKDKAKETADAITKEAK 604
M P P NGA LLY R+IRP FLKH +D+ S L +A + A IT++AK
Sbjct: 124 MTPGPWNGALLLYHRVIRPLFLKHHMALDSAASQLSGRALDLAAGITRDAK 174
>ref|NP_647453.1| receptor expression-enhancing protein 6 isoform 1 [Mus musculus].
Length = 201
Score = 229 bits (584), Expect = 5e-60
Identities = 105/173 (60%), Positives = 130/173 (75%)
Frame = +2
Query: 92 MRQRFDQFLHQKNYLTDILAKIEAKTGVNRSYIALGVIGLVALYLVFGYGASLLCNLIGF 271
+RQRF++FL QKN T+ L +EA+TGV + Y+A G + L+ LYL+FGYGASLLCN+IGF
Sbjct: 4 LRQRFERFLEQKNVATEALGALEARTGVEKRYLAAGALALLGLYLLFGYGASLLCNVIGF 63
Query: 272 GYPAYVSIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDLFLSWFPFYYMLKCGFLLWC 451
YPAY S+KAIESP+KEDDT WLTYWVVY +F + EFFSDL L WFPFYY KC FLL+C
Sbjct: 64 VYPAYASVKAIESPSKEDDTVWLTYWVVYALFGLVEFFSDLLLFWFPFYYAGKCAFLLFC 123
Query: 452 MAPSPANGADLLYQRIIRPFFLKHESQVDNVVSDLKDKAKETADAITKEAKKA 610
M P P NGA LLY R+IRP FLKH +D+ S L +A + A IT++ +A
Sbjct: 124 MTPGPWNGALLLYHRVIRPLFLKHHMALDSAASQLSGRALDLAAGITRDVLQA 176
>ref|NP_850919.1| receptor expression-enhancing protein 4 [Mus musculus].
Length = 257
Score = 110 bits (275), Expect = 3e-24
Identities = 48/128 (37%), Positives = 78/128 (60%), Gaps = 4/128 (3%)
Frame = +2
Query: 248 LLCNLI----GFGYPAYVSIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDLFLSWFPF 415
++C L+ G YPAY S KA++S N + +W+ YW+V+ +F AE F+D+F+SWFPF
Sbjct: 5 MICRLVVLIFGMLYPAYASYKAVKSKNIREYVRWMMYWIVFAIFMAAETFTDIFISWFPF 64
Query: 416 YYMLKCGFLLWCMAPSPANGADLLYQRIIRPFFLKHESQVDNVVSDLKDKAKETADAITK 595
YY K F+LW ++P GA LLY++ + P +HE ++D + K+++ ET + K
Sbjct: 65 YYEFKMAFVLWLLSPY-TKGASLLYRKFVHPSLSRHEKEIDACIVQAKERSYETMLSFGK 123
Query: 596 EAKKAAVN 619
+ A +
Sbjct: 124 RSLNIAAS 131
>ref|NP_001191843.1| receptor expression-enhancing protein 2 isoform 2 [Mus musculus].
Length = 252
Score = 101 bits (252), Expect = 2e-21
Identities = 43/124 (34%), Positives = 74/124 (59%)
Frame = +2
Query: 248 LLCNLIGFGYPAYVSIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDLFLSWFPFYYML 427
L+ + G YPAY S KA+++ N ++ +W+ YW+V+ F+ AE +D+ LSWFPFY+ L
Sbjct: 9 LVVLIFGTLYPAYSSYKAVKTKNVKEYVKWMMYWIVFAFFTTAETLTDIILSWFPFYFEL 68
Query: 428 KCGFLLWCMAPSPANGADLLYQRIIRPFFLKHESQVDNVVSDLKDKAKETADAITKEAKK 607
K F++W ++P G+ +LY++ + P E ++D ++ +DK+ ET + K
Sbjct: 69 KIAFVIWLLSPY-TKGSSVLYRKFVHPTLSNKEKEIDEYITQARDKSYETMMRVGKRGLN 127
Query: 608 AAVN 619
A N
Sbjct: 128 LAAN 131
>ref|NP_659114.2| receptor expression-enhancing protein 2 isoform 1 [Mus musculus].
Length = 254
Score = 101 bits (252), Expect = 2e-21
Identities = 43/124 (34%), Positives = 74/124 (59%)
Frame = +2
Query: 248 LLCNLIGFGYPAYVSIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDLFLSWFPFYYML 427
L+ + G YPAY S KA+++ N ++ +W+ YW+V+ F+ AE +D+ LSWFPFY+ L
Sbjct: 9 LVVLIFGTLYPAYSSYKAVKTKNVKEYVKWMMYWIVFAFFTTAETLTDIILSWFPFYFEL 68
Query: 428 KCGFLLWCMAPSPANGADLLYQRIIRPFFLKHESQVDNVVSDLKDKAKETADAITKEAKK 607
K F++W ++P G+ +LY++ + P E ++D ++ +DK+ ET + K
Sbjct: 69 KIAFVIWLLSPY-TKGSSVLYRKFVHPTLSNKEKEIDEYITQARDKSYETMMRVGKRGLN 127
Query: 608 AAVN 619
A N
Sbjct: 128 LAAN 131
>ref|NP_848723.1| receptor expression-enhancing protein 1 [Mus musculus].
Length = 201
Score = 97.8 bits (242), Expect = 2e-20
Identities = 40/107 (37%), Positives = 69/107 (64%)
Frame = +2
Query: 248 LLCNLIGFGYPAYVSIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDLFLSWFPFYYML 427
L+ + G YPAY S KA++S + ++ +W+ YW+++ +F+ AE F+D+FL WFPFYY L
Sbjct: 9 LVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLCWFPFYYEL 68
Query: 428 KCGFLLWCMAPSPANGADLLYQRIIRPFFLKHESQVDNVVSDLKDKA 568
K F+ W ++P G+ LLY++ + P E ++D+ + KD++
Sbjct: 69 KIAFVAWLLSPY-TKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRS 114
>ref|NP_001191844.1| receptor expression-enhancing protein 3 isoform 1 [Mus musculus].
Length = 267
Score = 92.4 bits (228), Expect = 1e-18
Identities = 36/106 (33%), Positives = 66/106 (62%)
Frame = +2
Query: 260 LIGFGYPAYVSIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDLFLSWFPFYYMLKCGF 439
+ G YPAY S KA+++ N ++ +W+ YW+V+ ++++ E +D L+WFP YY LK F
Sbjct: 13 VFGMLYPAYYSYKAVKTKNVKEYVRWMMYWIVFALYTVIETVADQTLAWFPLYYELKIAF 72
Query: 440 LLWCMAPSPANGADLLYQRIIRPFFLKHESQVDNVVSDLKDKAKET 577
++W ++P GA L+Y++ + P E ++D+ + K++ ET
Sbjct: 73 VIWLLSPY-TRGASLIYRKFLHPLLSSKEREIDDYIVQAKERGYET 117
>ref|NP_848721.1| receptor expression-enhancing protein 3 isoform 2 [Mus musculus].
Length = 254
Score = 92.4 bits (228), Expect = 1e-18
Identities = 36/106 (33%), Positives = 66/106 (62%)
Frame = +2
Query: 260 LIGFGYPAYVSIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDLFLSWFPFYYMLKCGF 439
+ G YPAY S KA+++ N ++ +W+ YW+V+ ++++ E +D L+WFP YY LK F
Sbjct: 13 VFGMLYPAYYSYKAVKTKNVKEYVRWMMYWIVFALYTVIETVADQTLAWFPLYYELKIAF 72
Query: 440 LLWCMAPSPANGADLLYQRIIRPFFLKHESQVDNVVSDLKDKAKET 577
++W ++P GA L+Y++ + P E ++D+ + K++ ET
Sbjct: 73 VIWLLSPY-TRGASLIYRKFLHPLLSSKEREIDDYIVQAKERGYET 117
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 55,973,624
Number of extensions: 1459945
Number of successful extensions: 4005
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4000
Number of HSP's successfully gapped: 9
Length of query: 575
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 468
Effective length of database: 12,403,707
Effective search space: 5804934876
Effective search space used: 5804934876
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001768
(1725 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003354033.1| PREDICTED: receptor expression-enhancing pro... 197 2e-50
Alignment gi|XP_003354288.1| PREDICTED: receptor expression-enhancing pro... 143 3e-34
Alignment gi|XP_003123881.2| PREDICTED: receptor expression-enhancing pro... 128 9e-30
Alignment gi|XP_001927652.1| PREDICTED: receptor expression-enhancing pro... 108 1e-23
Alignment gi|XP_001927661.2| PREDICTED: receptor expression-enhancing pro... 108 1e-23
Alignment gi|XP_003354290.1| PREDICTED: hypothetical protein LOC100620332... 104 2e-22
Alignment gi|XP_003124020.2| PREDICTED: receptor expression-enhancing pro... 101 1e-21
Alignment gi|XP_003124004.1| PREDICTED: receptor expression-enhancing pro... 101 1e-21
Alignment gi|XP_003125012.2| PREDICTED: receptor expression-enhancing pro... 98 1e-20
Alignment gi|XP_001925694.2| PREDICTED: receptor expression-enhancing pro... 91 2e-18
>ref|XP_003354033.1| PREDICTED: receptor expression-enhancing protein 6-like [Sus
scrofa].
Length = 193
Score = 197 bits (500), Expect = 2e-50
Identities = 90/139 (64%), Positives = 109/139 (78%)
Frame = +2
Query: 182 SYIALGVIGLVALYLVFGYGASLLCNLIGFGYPAYVSIKAIESPNKEDDTQWLTYWVVYG 361
S ++ G L++LYL+FG+GASLLCNLIGF YPAY SIKAIESP+KEDDT WLTYWVVYG
Sbjct: 21 SPLSTGAATLLSLYLLFGHGASLLCNLIGFAYPAYASIKAIESPSKEDDTVWLTYWVVYG 80
Query: 362 VFSIAEFFSDLFLSWFPFYYMLKCGFLLWCMAPSPANGADLLYQRIIRPFFLKHESQVDN 541
+F +AEFFSDL L WFPFYY KC FLL+CM P P NGA +LY R IRP FLKH VD+
Sbjct: 81 LFGLAEFFSDLLLFWFPFYYAGKCAFLLFCMIPGPWNGAHMLYHRAIRPLFLKHHEAVDS 140
Query: 542 VVSDLKDKAKETADAITKE 598
+++DL +A + A IT++
Sbjct: 141 IMNDLSGRALDVAAGITRD 159
>ref|XP_003354288.1| PREDICTED: receptor expression-enhancing protein 5-like [Sus
scrofa].
Length = 71
Score = 143 bits (360), Expect = 3e-34
Identities = 71/71 (100%), Positives = 71/71 (100%)
Frame = +2
Query: 80 MSAAMRQRFDQFLHQKNYLTDILAKIEAKTGVNRSYIALGVIGLVALYLVFGYGASLLCN 259
MSAAMRQRFDQFLHQKNYLTDILAKIEAKTGVNRSYIALGVIGLVALYLVFGYGASLLCN
Sbjct: 1 MSAAMRQRFDQFLHQKNYLTDILAKIEAKTGVNRSYIALGVIGLVALYLVFGYGASLLCN 60
Query: 260 LIGFGYPAYVS 292
LIGFGYPAYVS
Sbjct: 61 LIGFGYPAYVS 71
>ref|XP_003123881.2| PREDICTED: receptor expression-enhancing protein 5-like isoform 1
[Sus scrofa].
Length = 65
Score = 128 bits (322), Expect = 9e-30
Identities = 65/65 (100%), Positives = 65/65 (100%)
Frame = +2
Query: 452 MAPSPANGADLLYQRIIRPFFLKHESQVDNVVSDLKDKAKETADAITKEAKKAAVNLLGE 631
MAPSPANGADLLYQRIIRPFFLKHESQVDNVVSDLKDKAKETADAITKEAKKAAVNLLGE
Sbjct: 1 MAPSPANGADLLYQRIIRPFFLKHESQVDNVVSDLKDKAKETADAITKEAKKAAVNLLGE 60
Query: 632 EKKST 646
EKKST
Sbjct: 61 EKKST 65
>ref|XP_001927652.1| PREDICTED: receptor expression-enhancing protein 4 isoform 1 [Sus
scrofa].
Length = 257
Score = 108 bits (269), Expect = 1e-23
Identities = 46/128 (35%), Positives = 77/128 (60%), Gaps = 4/128 (3%)
Frame = +2
Query: 248 LLCNLI----GFGYPAYVSIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDLFLSWFPF 415
++C L+ G YPAY S KA+++ N + +W+ YW+V+ +F E F+D+F+SWFPF
Sbjct: 5 MICRLVVLVFGMLYPAYASYKAVKTKNIREYVRWMMYWIVFALFMAVETFTDIFVSWFPF 64
Query: 416 YYMLKCGFLLWCMAPSPANGADLLYQRIIRPFFLKHESQVDNVVSDLKDKAKETADAITK 595
YY +K F+LW ++P GA LLY++ + P +HE ++D + K+++ ET + K
Sbjct: 65 YYEIKMAFVLWLLSPY-TKGASLLYRKFVHPSLSRHEKEIDTYIVQAKERSYETVLSFGK 123
Query: 596 EAKKAAVN 619
A +
Sbjct: 124 RGLNIAAS 131
>ref|XP_001927661.2| PREDICTED: receptor expression-enhancing protein 4 isoform 2 [Sus
scrofa].
Length = 257
Score = 108 bits (269), Expect = 1e-23
Identities = 46/128 (35%), Positives = 77/128 (60%), Gaps = 4/128 (3%)
Frame = +2
Query: 248 LLCNLI----GFGYPAYVSIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDLFLSWFPF 415
++C L+ G YPAY S KA+++ N + +W+ YW+V+ +F E F+D+F+SWFPF
Sbjct: 5 MICRLVVLVFGMLYPAYASYKAVKTKNIREYVRWMMYWIVFALFMAVETFTDIFVSWFPF 64
Query: 416 YYMLKCGFLLWCMAPSPANGADLLYQRIIRPFFLKHESQVDNVVSDLKDKAKETADAITK 595
YY +K F+LW ++P GA LLY++ + P +HE ++D + K+++ ET + K
Sbjct: 65 YYEIKMAFVLWLLSPY-TKGASLLYRKFVHPSLSRHEKEIDTYIVQAKERSYETVLSFGK 123
Query: 596 EAKKAAVN 619
A +
Sbjct: 124 RGLNIAAS 131
>ref|XP_003354290.1| PREDICTED: hypothetical protein LOC100620332 [Sus scrofa].
Length = 429
Score = 104 bits (259), Expect = 2e-22
Identities = 49/58 (84%), Positives = 50/58 (86%)
Frame = +2
Query: 272 GYPAYVSIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDLFLSWFPFYYMLKCGFLL 445
G + IKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDLFLSWFPFYYMLK F L
Sbjct: 55 GPKKFPRIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDLFLSWFPFYYMLKLLFWL 112
>ref|XP_003124020.2| PREDICTED: receptor expression-enhancing protein 2-like [Sus
scrofa].
Length = 245
Score = 101 bits (251), Expect = 1e-21
Identities = 43/124 (34%), Positives = 74/124 (59%)
Frame = +2
Query: 248 LLCNLIGFGYPAYVSIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDLFLSWFPFYYML 427
L+ + G YPAY S KA+++ N ++ +W+ YW+V+ F+ AE +D+ LSWFPFY+ L
Sbjct: 9 LVVLIFGTLYPAYSSYKAVKTKNVKEYVKWMMYWIVFAFFTTAETLTDIVLSWFPFYFEL 68
Query: 428 KCGFLLWCMAPSPANGADLLYQRIIRPFFLKHESQVDNVVSDLKDKAKETADAITKEAKK 607
K F++W ++P G+ +LY++ + P E ++D ++ +DK+ ET + K
Sbjct: 69 KIAFVIWLLSPY-TKGSSVLYRKFVHPTLSNKEKEIDEYITQARDKSYETMMRVGKRGLN 127
Query: 608 AAVN 619
A N
Sbjct: 128 LAAN 131
>ref|XP_003124004.1| PREDICTED: receptor expression-enhancing protein 2-like [Sus
scrofa].
Length = 254
Score = 101 bits (251), Expect = 1e-21
Identities = 43/124 (34%), Positives = 74/124 (59%)
Frame = +2
Query: 248 LLCNLIGFGYPAYVSIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDLFLSWFPFYYML 427
L+ + G YPAY S KA+++ N ++ +W+ YW+V+ F+ AE +D+ LSWFPFY+ L
Sbjct: 9 LVVLIFGTLYPAYSSYKAVKTKNVKEYVKWMMYWIVFAFFTTAETLTDIVLSWFPFYFEL 68
Query: 428 KCGFLLWCMAPSPANGADLLYQRIIRPFFLKHESQVDNVVSDLKDKAKETADAITKEAKK 607
K F++W ++P G+ +LY++ + P E ++D ++ +DK+ ET + K
Sbjct: 69 KIAFVIWLLSPY-TKGSSVLYRKFVHPTLSNKEKEIDEYITQARDKSYETMMRVGKRGLN 127
Query: 608 AAVN 619
A N
Sbjct: 128 LAAN 131
>ref|XP_003125012.2| PREDICTED: receptor expression-enhancing protein 1-like [Sus
scrofa].
Length = 202
Score = 98.2 bits (243), Expect = 1e-20
Identities = 41/108 (37%), Positives = 69/108 (63%)
Frame = +2
Query: 245 SLLCNLIGFGYPAYVSIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDLFLSWFPFYYM 424
S L + G YPAY S KA++S + ++ +W+ YW+++ +F+ AE F+D+FL WFPFYY
Sbjct: 9 SRLVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLCWFPFYYE 68
Query: 425 LKCGFLLWCMAPSPANGADLLYQRIIRPFFLKHESQVDNVVSDLKDKA 568
LK F+ W ++P G+ LLY++ + P E ++D+ + KD++
Sbjct: 69 LKIAFVAWLLSPY-TKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRS 115
>ref|XP_001925694.2| PREDICTED: receptor expression-enhancing protein 3-like [Sus
scrofa].
Length = 255
Score = 90.9 bits (224), Expect = 2e-18
Identities = 35/106 (33%), Positives = 66/106 (62%)
Frame = +2
Query: 260 LIGFGYPAYVSIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDLFLSWFPFYYMLKCGF 439
+ G YPAY S KA+++ N ++ +W+ YW+V+ ++++ E +D ++WFP YY LK F
Sbjct: 13 VFGMLYPAYYSYKAVKTKNVKEYVRWMMYWIVFALYTVIETVADQTVAWFPLYYELKIAF 72
Query: 440 LLWCMAPSPANGADLLYQRIIRPFFLKHESQVDNVVSDLKDKAKET 577
++W ++P GA L+Y++ + P E ++D+ + K++ ET
Sbjct: 73 VIWLLSPY-TKGASLIYRKFLHPLLSAKEREIDDYIVQAKERGYET 117
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 41,054,068
Number of extensions: 1075484
Number of successful extensions: 2902
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2894
Number of HSP's successfully gapped: 10
Length of query: 575
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 471
Effective length of database: 8,754,644
Effective search space: 4123437324
Effective search space used: 4123437324
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001768
(1725 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 2032 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 2032 bits (1025), Expect = 0.0
Identities = 1108/1134 (97%), Gaps = 7/1134 (0%)
Strand = Plus / Plus
Query: 598 agccaagaaagccgccgtgaatttattgggtgaggagaagaagagcacctaaaccactgg 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121505323 agccaagaaagccgccgtgaatttattgggtgaggagaagaagagcacctaaaccactgg 121505382
Query: 658 ctggatgaaagcttcctgctctccctgtaccttcctattagagctcgatgttatattagg 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121505383 ctggatgaaagcttcctgctctccctgtaccttcctattagagctcgatgttatattagg 121505442
Query: 718 aactgtggtaaaataatttgaataatgttgccttggaaacatttttgatatatatnnnnn 777
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121505443 aactgtggtaaaataatttgaataatgttgccttggaaacatttttgatatatataaaaa 121505502
Query: 778 nnggaatatgttgtaagattttttgcttacttttactgtctatatacatagggacagtgt 837
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 121505503 aaggaatatgttgtaagattttttgcttacctttactgtctatatacatagggacagtgt 121505562
Query: 838 ccaagtttttggaaagtagattttgcctctgggtaggaaaagacttatgttaccatgtag 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121505563 ccaagtttttggaaagtagattttgcctctgggtaggaaaagacttatgttaccatgtag 121505622
Query: 898 gaaatatgaacttcaaattaaattataatatcccatgggccttgtacttgagtaggcttt 957
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121505623 aaaatatgaacttcaaattaaattataatatcccatgggccttgtacttgagtaggcttt 121505682
Query: 958 ctgcatgcattttctctgtacttatattttaggacactctttcggttctacttcatgtaa 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121505683 ctgcatgcattttctctgtacttatattttaggacactctttcggttctacttcatgtaa 121505742
Query: 1018 tgtgcaattttgtagtaaatgttttaatgtatctgtgcgtacacacacatgtggggaatg 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121505743 tgtgcaattttgtagtaaatgttttaatgtatctgtgcgtacacacacatgtggggaatg 121505802
Query: 1078 ttcctgtgcgcagatgtgtgcagatgcccacagggagtgcctgccaaaggctgaagactc 1137
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121505803 ttcctgtgcgcagatgcgtgcagatgcccacagggagtgcctgccaaaggctgaagactc 121505862
Query: 1138 ccttgtgctggtgtgatctgcccagtaacactccagaaaatgaacaccagtgagtcatgt 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121505863 ccttgtgctggtgtgatctgcccagtaacactccagaaaatgaacaccagtgagtcatgt 121505922
Query: 1198 ttcaaatgaacagttaattgataaatgaggcagaacggaagttggcctgg----ttgcgt 1253
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 121505923 ttcaaatgaacagttaattgataaatgaggcagaacggaagttggcctggttgcttgcgt 121505982
Query: 1254 tcctaacaccatagcagctgaataccagaacagctttgtaaagcagtcgtttgagtggca 1313
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 121505983 tcctaacaccatagcagctgaataccagtacagctttgtaaagcagtcgtttgagtggca 121506042
Query: 1314 gatggggaaatgtacacacacgttaccactcccaattcggtagaactagtaccattgtct 1373
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121506043 gctggggaaatgtacacacacgttaccactcccaattcggtagaactagtaccattgtct 121506102
Query: 1374 tgtagctttttaaaaactggctgataagcttgatattcgtctgcttttaagatgctatag 1433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121506103 tgtagctttttaaaaactggctgataagcttgatattcgtctgcttttaagatgctatag 121506162
Query: 1434 tggaaaccatcccctgtttcaccttcatagccaagcaacatgttggtttagtcttgtttc 1493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121506163 tggaaaccatcccctgtttcaccttcatagccaagcaacatgttggtttagtcttgtttc 121506222
Query: 1494 tttcccaggctctttttaaacagtttaaggaacatccagagacttccccacctcttggta 1553
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 121506223 tttcccaggctctttttaaactgtttaaggaacatccagagacttccccacctcttgtta 121506282
Query: 1554 tatgtacattcttgtttatattggtagcaactagaggctaaggatgtcaccaggctcgaa 1613
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 121506283 tatgtacattcttgtttatattgttagcaactagaggctaaggatgtcaccaggctcgaa 121506342
Query: 1614 gagccattctggggagagaaaaggaangatgacacgccccatcatctggctggcagtggc 1673
|||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 121506343 gagccattct-gggagaggaaaggaaggatgacacgccccatcatctggctggcagtggc 121506401
Query: 1674 taagcc-aactgccttcatcttctttcc-tggcctgaaaggtctagcaccagag 1725
|||||| ||||||||||| ||||||||| ||||||| |||||||||||||||||
Sbjct: 121506402 taagccaaactgccttcaccttctttccttggcctgtaaggtctagcaccagag 121506455
Score = 373 bits (188), Expect = e-100
Identities = 191/192 (99%)
Strand = Plus / Plus
Query: 8 cccccgtcatctcccctctgcggccacccggtactagaagcagccccgggcggcggtgcg 67
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 121468342 cccccgtcatctcccctctgcggccacccgctactagaagcagccccgggcggcggtgcg 121468401
Query: 68 acggtccccgccatgtctgcagccatgaggcagaggttcgaccaattcctgcaccagaaa 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121468402 acggtccccgccatgtctgcagccatgaggcagaggttcgaccaattcctgcaccagaaa 121468461
Query: 128 aactacctgactgacatcttggccaagatcgaggccaagaccggcgtgaaccggagctac 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121468462 aactacctgactgacatcttggccaagatcgaggccaagaccggcgtgaaccggagctac 121468521
Query: 188 atagcgctaggt 199
||||||||||||
Sbjct: 121468522 atagcgctaggt 121468533
Score = 339 bits (171), Expect = 3e-90
Identities = 171/171 (100%)
Strand = Plus / Plus
Query: 429 agtgcggcttcctgctgtggtgcatggctcccagccccgccaacggagcagacctgctct 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121499905 agtgcggcttcctgctgtggtgcatggctcccagccccgccaacggagcagacctgctct 121499964
Query: 489 accagcgcatcatccggcccttcttcctgaagcacgaatctcaggtagacaatgtggtga 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121499965 accagcgcatcatccggcccttcttcctgaagcacgaatctcaggtagacaatgtggtga 121500024
Query: 549 gtgacttgaaggacaaagccaaagagacggcggatgccatcactaaggaag 599
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121500025 gtgacttgaaggacaaagccaaagagacggcggatgccatcactaaggaag 121500075
Score = 276 bits (139), Expect = 4e-71
Identities = 139/139 (100%)
Strand = Plus / Plus
Query: 292 aattaaagccatagagagtcccaacaaagaagatgatacccagtggctgacctactgggt 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121492276 aattaaagccatagagagtcccaacaaagaagatgatacccagtggctgacctactgggt 121492335
Query: 352 agtgtatggtgtgttcagcattgccgaattcttctctgacctcttcctgtcatggttccc 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121492336 agtgtatggtgtgttcagcattgccgaattcttctctgacctcttcctgtcatggttccc 121492395
Query: 412 cttctactacatgctgaag 430
|||||||||||||||||||
Sbjct: 121492396 cttctactacatgctgaag 121492414
Score = 182 bits (92), Expect = 4e-43
Identities = 95/96 (98%)
Strand = Plus / Plus
Query: 196 aggtgtcatcgggctggtggccttgtacctggtgtttggttatggagcctctcttctctg 255
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 121469202 aggtgtcatcgggctggtggccttgtacctggtgtttggttatggagcctctctcctctg 121469261
Query: 256 caatctgataggatttggctacccagcctacgtctc 291
||||||||||||||||||||||||||||||||||||
Sbjct: 121469262 caatctgataggatttggctacccagcctacgtctc 121469297
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 56,929,137
Number of extensions: 429
Number of successful extensions: 429
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 424
Number of HSP's successfully gapped: 5
Length of query: 1725
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1703
Effective length of database: 2,808,408,574
Effective search space: 4782719801522
Effective search space used: 4782719801522
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)