Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001772
(961 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002685102.1| PREDICTED: ferritin light chain-like [Bos ta... 305 3e-96
Alignment gi|XP_001251869.1| PREDICTED: ferritin light chain-like [Bos ta... 305 3e-96
Alignment gi|NP_777217.1| ferritin light chain [Bos taurus]. 318 3e-87
Alignment gi|XP_002697587.1| PREDICTED: ferritin light chain-like [Bos ta... 318 3e-87
Alignment gi|XP_001254820.1| PREDICTED: ferritin light chain-like [Bos ta... 318 3e-87
Alignment gi|XP_001251064.1| PREDICTED: ferritin light chain-like [Bos ta... 318 3e-87
Alignment gi|XP_001253103.1| PREDICTED: ferritin light chain-like isoform... 318 3e-87
Alignment gi|XP_002707816.1| PREDICTED: ferritin light chain-like [Bos ta... 309 2e-84
Alignment gi|XP_002688497.1| PREDICTED: ferritin light chain-like [Bos ta... 308 4e-84
Alignment gi|XP_001251438.1| PREDICTED: ferritin light chain-like [Bos ta... 308 4e-84
>ref|XP_002685102.1| PREDICTED: ferritin light chain-like [Bos taurus].
Length = 305
Score = 305 bits (780), Expect(2) = 3e-96
Identities = 153/187 (81%), Positives = 165/187 (88%), Gaps = 1/187 (0%)
Frame = +3
Query: 225 FLSLAPY-CRPAMSSQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDVALEGV 401
F SL P P +SSQ+RQNYSTEVEA VNRL+NM L+ASY YLSLGFYF+ DDVALEGV
Sbjct: 119 FNSLLPIRLLPNLSSQIRQNYSTEVEAAVNRLVNMQLRASYAYLSLGFYFDHDDVALEGV 178
Query: 402 SHFFRELAEEKREGSERLLKMQNQRGGRALFQDVQKPSQDEWGKTQDAMEAALHLEKGLN 581
HFFRELA+EKREG+ERLLKMQ QRGGRALF DVQKPSQDEWGKTQDAMEAAL +EK LN
Sbjct: 179 GHFFRELAKEKREGAERLLKMQKQRGGRALFLDVQKPSQDEWGKTQDAMEAALLVEKNLN 238
Query: 582 QALVDLHALGSARADPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLSGPQAGLGEYLFE 761
QAL+DLH L SAR DPH+CDFLENHFLDEEVKLIKKMGDHLTNL RL+G QAGLG+YLFE
Sbjct: 239 QALLDLHGLASARGDPHICDFLENHFLDEEVKLIKKMGDHLTNLLRLAGLQAGLGDYLFE 298
Query: 762 RLTLKHD 782
RL LKHD
Sbjct: 299 RLILKHD 305
Score = 66.6 bits (161), Expect(2) = 3e-96
Identities = 33/38 (86%), Positives = 33/38 (86%)
Frame = +1
Query: 64 GPPDLSLASTVFGRNRPRDAPCSSLRLPSNLFSSRNLR 177
GP DLSLASTV G NR RDAPCSSLR PSNLFSSRNLR
Sbjct: 66 GPADLSLASTVLGPNRRRDAPCSSLRSPSNLFSSRNLR 103
>ref|XP_001251869.1| PREDICTED: ferritin light chain-like [Bos taurus].
Length = 305
Score = 305 bits (780), Expect(2) = 3e-96
Identities = 153/187 (81%), Positives = 165/187 (88%), Gaps = 1/187 (0%)
Frame = +3
Query: 225 FLSLAPY-CRPAMSSQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDVALEGV 401
F SL P P +SSQ+RQNYSTEVEA VNRL+NM L+ASY YLSLGFYF+ DDVALEGV
Sbjct: 119 FNSLLPIRLLPNLSSQIRQNYSTEVEAAVNRLVNMQLRASYAYLSLGFYFDHDDVALEGV 178
Query: 402 SHFFRELAEEKREGSERLLKMQNQRGGRALFQDVQKPSQDEWGKTQDAMEAALHLEKGLN 581
HFFRELA+EKREG+ERLLKMQ QRGGRALF DVQKPSQDEWGKTQDAMEAAL +EK LN
Sbjct: 179 GHFFRELAKEKREGAERLLKMQKQRGGRALFLDVQKPSQDEWGKTQDAMEAALLVEKNLN 238
Query: 582 QALVDLHALGSARADPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLSGPQAGLGEYLFE 761
QAL+DLH L SAR DPH+CDFLENHFLDEEVKLIKKMGDHLTNL RL+G QAGLG+YLFE
Sbjct: 239 QALLDLHGLASARGDPHICDFLENHFLDEEVKLIKKMGDHLTNLLRLAGLQAGLGDYLFE 298
Query: 762 RLTLKHD 782
RL LKHD
Sbjct: 299 RLILKHD 305
Score = 66.6 bits (161), Expect(2) = 3e-96
Identities = 33/38 (86%), Positives = 33/38 (86%)
Frame = +1
Query: 64 GPPDLSLASTVFGRNRPRDAPCSSLRLPSNLFSSRNLR 177
GP DLSLASTV G NR RDAPCSSLR PSNLFSSRNLR
Sbjct: 66 GPADLSLASTVLGPNRRRDAPCSSLRSPSNLFSSRNLR 103
>ref|NP_777217.1| ferritin light chain [Bos taurus].
Length = 175
Score = 318 bits (816), Expect = 3e-87
Identities = 155/175 (88%), Positives = 166/175 (94%)
Frame = +3
Query: 258 MSSQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDVALEGVSHFFRELAEEKR 437
MSSQ+RQNYSTEVEA VNRL+NM L+ASYTYLSLGFYF+RDDVALEGV HFFRELA+EKR
Sbjct: 1 MSSQIRQNYSTEVEAAVNRLVNMQLRASYTYLSLGFYFDRDDVALEGVGHFFRELAKEKR 60
Query: 438 EGSERLLKMQNQRGGRALFQDVQKPSQDEWGKTQDAMEAALHLEKGLNQALVDLHALGSA 617
EG+ERLLK+QNQRGGRALF DVQKPSQDEWGKTQDAMEAAL +EK LNQAL+DLH L SA
Sbjct: 61 EGAERLLKLQNQRGGRALFLDVQKPSQDEWGKTQDAMEAALLVEKNLNQALLDLHGLASA 120
Query: 618 RADPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLSGPQAGLGEYLFERLTLKHD 782
R DPH+CDFLENHFLDEEVKLIKKMGDHLTNLRRL+GPQAGLGEYLFERLTLKHD
Sbjct: 121 RGDPHICDFLENHFLDEEVKLIKKMGDHLTNLRRLAGPQAGLGEYLFERLTLKHD 175
>ref|XP_002697587.1| PREDICTED: ferritin light chain-like [Bos taurus].
Length = 175
Score = 318 bits (816), Expect = 3e-87
Identities = 155/175 (88%), Positives = 166/175 (94%)
Frame = +3
Query: 258 MSSQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDVALEGVSHFFRELAEEKR 437
MSSQ+RQNYSTEVEA VNRL+NM L+ASYTYLSLGFYF+RDDVALEGV HFFRELA+EKR
Sbjct: 1 MSSQIRQNYSTEVEAAVNRLVNMQLRASYTYLSLGFYFDRDDVALEGVGHFFRELAKEKR 60
Query: 438 EGSERLLKMQNQRGGRALFQDVQKPSQDEWGKTQDAMEAALHLEKGLNQALVDLHALGSA 617
EG+ERLLK+QNQRGGRALF DVQKPSQDEWGKTQDAMEAAL +EK LNQAL+DLH L SA
Sbjct: 61 EGAERLLKLQNQRGGRALFLDVQKPSQDEWGKTQDAMEAALLVEKNLNQALLDLHGLASA 120
Query: 618 RADPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLSGPQAGLGEYLFERLTLKHD 782
R DPH+CDFLENHFLDEEVKLIKKMGDHLTNLRRL+GPQAGLGEYLFERLTLKHD
Sbjct: 121 RGDPHICDFLENHFLDEEVKLIKKMGDHLTNLRRLAGPQAGLGEYLFERLTLKHD 175
>ref|XP_001254820.1| PREDICTED: ferritin light chain-like [Bos taurus].
Length = 175
Score = 318 bits (816), Expect = 3e-87
Identities = 155/175 (88%), Positives = 166/175 (94%)
Frame = +3
Query: 258 MSSQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDVALEGVSHFFRELAEEKR 437
MSSQ+RQNYSTEVEA VNRL+NM L+ASYTYLSLGFYF+RDDVALEGV HFFRELA+EKR
Sbjct: 1 MSSQIRQNYSTEVEAAVNRLVNMQLRASYTYLSLGFYFDRDDVALEGVGHFFRELAKEKR 60
Query: 438 EGSERLLKMQNQRGGRALFQDVQKPSQDEWGKTQDAMEAALHLEKGLNQALVDLHALGSA 617
EG+ERLLK+QNQRGGRALF DVQKPSQDEWGKTQDAMEAAL +EK LNQAL+DLH L SA
Sbjct: 61 EGAERLLKLQNQRGGRALFLDVQKPSQDEWGKTQDAMEAALLVEKNLNQALLDLHGLASA 120
Query: 618 RADPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLSGPQAGLGEYLFERLTLKHD 782
R DPH+CDFLENHFLDEEVKLIKKMGDHLTNLRRL+GPQAGLGEYLFERLTLKHD
Sbjct: 121 RGDPHICDFLENHFLDEEVKLIKKMGDHLTNLRRLAGPQAGLGEYLFERLTLKHD 175
>ref|XP_001251064.1| PREDICTED: ferritin light chain-like [Bos taurus].
Length = 175
Score = 318 bits (816), Expect = 3e-87
Identities = 155/175 (88%), Positives = 166/175 (94%)
Frame = +3
Query: 258 MSSQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDVALEGVSHFFRELAEEKR 437
MSSQ+RQNYSTEVEA VNRL+NM L+ASYTYLSLGFYF+RDDVALEGV HFFRELA+EKR
Sbjct: 1 MSSQIRQNYSTEVEAAVNRLVNMQLRASYTYLSLGFYFDRDDVALEGVGHFFRELAKEKR 60
Query: 438 EGSERLLKMQNQRGGRALFQDVQKPSQDEWGKTQDAMEAALHLEKGLNQALVDLHALGSA 617
EG+ERLLK+QNQRGGRALF DVQKPSQDEWGKTQDAMEAAL +EK LNQAL+DLH L SA
Sbjct: 61 EGAERLLKLQNQRGGRALFLDVQKPSQDEWGKTQDAMEAALLVEKNLNQALLDLHGLASA 120
Query: 618 RADPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLSGPQAGLGEYLFERLTLKHD 782
R DPH+CDFLENHFLDEEVKLIKKMGDHLTNLRRL+GPQAGLGEYLFERLTLKHD
Sbjct: 121 RGDPHICDFLENHFLDEEVKLIKKMGDHLTNLRRLAGPQAGLGEYLFERLTLKHD 175
>ref|XP_001253103.1| PREDICTED: ferritin light chain-like isoform 1 [Bos taurus].
Length = 175
Score = 318 bits (816), Expect = 3e-87
Identities = 155/175 (88%), Positives = 166/175 (94%)
Frame = +3
Query: 258 MSSQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDVALEGVSHFFRELAEEKR 437
MSSQ+RQNYSTEVEA VNRL+NM L+ASYTYLSLGFYF+RDDVALEGV HFFRELA+EKR
Sbjct: 1 MSSQIRQNYSTEVEAAVNRLVNMQLRASYTYLSLGFYFDRDDVALEGVGHFFRELAKEKR 60
Query: 438 EGSERLLKMQNQRGGRALFQDVQKPSQDEWGKTQDAMEAALHLEKGLNQALVDLHALGSA 617
EG+ERLLK+QNQRGGRALF DVQKPSQDEWGKTQDAMEAAL +EK LNQAL+DLH L SA
Sbjct: 61 EGAERLLKLQNQRGGRALFLDVQKPSQDEWGKTQDAMEAALLVEKNLNQALLDLHGLASA 120
Query: 618 RADPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLSGPQAGLGEYLFERLTLKHD 782
R DPH+CDFLENHFLDEEVKLIKKMGDHLTNLRRL+GPQAGLGEYLFERLTLKHD
Sbjct: 121 RGDPHICDFLENHFLDEEVKLIKKMGDHLTNLRRLAGPQAGLGEYLFERLTLKHD 175
>ref|XP_002707816.1| PREDICTED: ferritin light chain-like [Bos taurus].
Length = 175
Score = 309 bits (792), Expect = 2e-84
Identities = 151/175 (86%), Positives = 161/175 (92%)
Frame = +3
Query: 258 MSSQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDVALEGVSHFFRELAEEKR 437
MSSQ+RQNYSTEVEA VNRL+NM L+ YTYLSLGFYF+RDDVALEGV HFF ELA EKR
Sbjct: 1 MSSQIRQNYSTEVEAAVNRLVNMQLRTFYTYLSLGFYFDRDDVALEGVGHFFPELAREKR 60
Query: 438 EGSERLLKMQNQRGGRALFQDVQKPSQDEWGKTQDAMEAALHLEKGLNQALVDLHALGSA 617
EG+E LLK+QNQRGGRALF DVQKPSQDEWGKTQDAMEAAL +EK LNQAL+DLH L SA
Sbjct: 61 EGAEXLLKLQNQRGGRALFLDVQKPSQDEWGKTQDAMEAALLVEKNLNQALLDLHGLASA 120
Query: 618 RADPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLSGPQAGLGEYLFERLTLKHD 782
R DPH+CDFLENHFLDEEVKLIKKMGDHLTNLRRL+GPQAGLGEYLFERLTLKHD
Sbjct: 121 RGDPHICDFLENHFLDEEVKLIKKMGDHLTNLRRLAGPQAGLGEYLFERLTLKHD 175
>ref|XP_002688497.1| PREDICTED: ferritin light chain-like [Bos taurus].
Length = 175
Score = 308 bits (790), Expect = 4e-84
Identities = 151/175 (86%), Positives = 163/175 (93%)
Frame = +3
Query: 258 MSSQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDVALEGVSHFFRELAEEKR 437
MSSQ+RQNYSTEVEA VNRL+NM L+ASYTYLSLGFYF+RDDVALEGV HFFRELA+EKR
Sbjct: 1 MSSQIRQNYSTEVEAAVNRLVNMQLRASYTYLSLGFYFDRDDVALEGVGHFFRELAKEKR 60
Query: 438 EGSERLLKMQNQRGGRALFQDVQKPSQDEWGKTQDAMEAALHLEKGLNQALVDLHALGSA 617
EG+ERLLK+QNQ GGRALF DVQKPSQDEWGKTQDAMEA+L +EK LNQAL+DLH L SA
Sbjct: 61 EGAERLLKLQNQCGGRALFLDVQKPSQDEWGKTQDAMEASLLVEKNLNQALLDLHGLASA 120
Query: 618 RADPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLSGPQAGLGEYLFERLTLKHD 782
R D H+CDFLENHFLDEEVKLIKKMGDHLTNL RL+GPQAGLGEYLFERLTLKHD
Sbjct: 121 RGDSHICDFLENHFLDEEVKLIKKMGDHLTNLPRLAGPQAGLGEYLFERLTLKHD 175
>ref|XP_001251438.1| PREDICTED: ferritin light chain-like [Bos taurus].
Length = 175
Score = 308 bits (790), Expect = 4e-84
Identities = 151/175 (86%), Positives = 163/175 (93%)
Frame = +3
Query: 258 MSSQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDVALEGVSHFFRELAEEKR 437
MSSQ+RQNYSTEVEA VNRL+NM L+ASYTYLSLGFYF+RDDVALEGV HFFRELA+EKR
Sbjct: 1 MSSQIRQNYSTEVEAAVNRLVNMQLRASYTYLSLGFYFDRDDVALEGVGHFFRELAKEKR 60
Query: 438 EGSERLLKMQNQRGGRALFQDVQKPSQDEWGKTQDAMEAALHLEKGLNQALVDLHALGSA 617
EG+ERLLK+QNQ GGRALF DVQKPSQDEWGKTQDAMEA+L +EK LNQAL+DLH L SA
Sbjct: 61 EGAERLLKLQNQCGGRALFLDVQKPSQDEWGKTQDAMEASLLVEKNLNQALLDLHGLASA 120
Query: 618 RADPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLSGPQAGLGEYLFERLTLKHD 782
R D H+CDFLENHFLDEEVKLIKKMGDHLTNL RL+GPQAGLGEYLFERLTLKHD
Sbjct: 121 RGDSHICDFLENHFLDEEVKLIKKMGDHLTNLPRLAGPQAGLGEYLFERLTLKHD 175
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,858,814
Number of extensions: 1105303
Number of successful extensions: 4990
Number of sequences better than 1.0e-05: 52
Number of HSP's gapped: 4959
Number of HSP's successfully gapped: 54
Length of query: 320
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 218
Effective length of database: 14,306,398
Effective search space: 3118794764
Effective search space used: 3118794764
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001772
(961 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001019807.1| ferritin light chain [Canis lupus familiaris]. 327 1e-89
Alignment gi|XP_536874.2| PREDICTED: similar to Ferritin light chain 2 (F... 313 2e-89
Alignment gi|XP_534978.2| PREDICTED: similar to ferritin light chain 1 [C... 249 4e-83
Alignment gi|XP_850798.1| PREDICTED: similar to ferritin light chain 1 [C... 250 2e-81
Alignment gi|XP_541621.2| PREDICTED: similar to ferritin light chain 1 [C... 269 3e-72
Alignment gi|XP_852243.1| PREDICTED: similar to Ferritin light chain 1 (F... 268 4e-72
Alignment gi|XP_548949.2| PREDICTED: similar to Ferritin light chain (Fer... 256 3e-68
Alignment gi|NP_001003080.1| ferritin heavy chain [Canis lupus familiaris]. 211 1e-54
Alignment gi|NP_001180585.1| ferritin, heavy polypeptide 1 [Canis lupus f... 211 1e-54
Alignment gi|XP_535550.2| PREDICTED: similar to Ferritin heavy chain (Fer... 167 1e-41
>ref|NP_001019807.1| ferritin light chain [Canis lupus familiaris].
Length = 175
Score = 327 bits (838), Expect = 1e-89
Identities = 161/175 (92%), Positives = 168/175 (96%)
Frame = +3
Query: 258 MSSQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDVALEGVSHFFRELAEEKR 437
MSSQ+RQNYSTEVEA VNRL+NMHL+ASYTYLSLGFYF+RDDVALEGV HFFRELAEEKR
Sbjct: 1 MSSQIRQNYSTEVEAAVNRLVNMHLRASYTYLSLGFYFDRDDVALEGVGHFFRELAEEKR 60
Query: 438 EGSERLLKMQNQRGGRALFQDVQKPSQDEWGKTQDAMEAALHLEKGLNQALVDLHALGSA 617
EG+ER LKMQNQRGGRALFQDVQKPSQDEWGKT DAMEAAL LEK LNQAL+DLHALGSA
Sbjct: 61 EGAERFLKMQNQRGGRALFQDVQKPSQDEWGKTLDAMEAALLLEKSLNQALLDLHALGSA 120
Query: 618 RADPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLSGPQAGLGEYLFERLTLKHD 782
RADPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRL+ PQAGLGEYLFERLTLKHD
Sbjct: 121 RADPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLATPQAGLGEYLFERLTLKHD 175
>ref|XP_536874.2| PREDICTED: similar to Ferritin light chain 2 (Ferritin L subunit 2)
(Ferritin subunit LG) [Canis familiaris].
Length = 251
Score = 313 bits (801), Expect(2) = 2e-89
Identities = 160/190 (84%), Positives = 170/190 (89%)
Frame = +3
Query: 213 SQHHFLSLAPYCRPAMSSQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDVAL 392
S+H L+L P MSS++RQNYSTEVEA VNRL+NMHL+ASYTYLSLGFYF+RDDVAL
Sbjct: 65 SEHPSLNLIPCLESTMSSRIRQNYSTEVEAVVNRLVNMHLRASYTYLSLGFYFDRDDVAL 124
Query: 393 EGVSHFFRELAEEKREGSERLLKMQNQRGGRALFQDVQKPSQDEWGKTQDAMEAALHLEK 572
EGV HFFREL EK EG+ER LKMQNQRGG ALFQDVQKPSQDEWGKT DAMEAAL LEK
Sbjct: 125 EGVGHFFREL--EKCEGAERFLKMQNQRGGCALFQDVQKPSQDEWGKTLDAMEAALLLEK 182
Query: 573 GLNQALVDLHALGSARADPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLSGPQAGLGEY 752
LNQAL+DLHALGSARADPHLCDFLENHFLD EVKLIKKMGDHLTNLRRL+ PQAGLGEY
Sbjct: 183 NLNQALLDLHALGSARADPHLCDFLENHFLD-EVKLIKKMGDHLTNLRRLATPQAGLGEY 241
Query: 753 LFERLTLKHD 782
LFERLTLKHD
Sbjct: 242 LFERLTLKHD 251
Score = 35.8 bits (81), Expect(2) = 2e-89
Identities = 20/36 (55%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 53 VCSAVPRICLLLQQCLDGTDPGTPL-APASDYPPTF 157
V SAV RICLLLQQCLD G P P + P F
Sbjct: 13 VLSAVLRICLLLQQCLDEQTQGRPFYQPTATLQPFF 48
>ref|XP_534978.2| PREDICTED: similar to ferritin light chain 1 [Canis familiaris].
Length = 227
Score = 249 bits (636), Expect(2) = 4e-83
Identities = 128/160 (80%), Positives = 137/160 (85%), Gaps = 2/160 (1%)
Frame = +3
Query: 258 MSSQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDVALEGVSHFFRELAEEKR 437
MSSQ+RQN STEVEA VNRL +MHL+ASYT LSLGFY +RDD AL G HFFRELAEEKR
Sbjct: 1 MSSQIRQNSSTEVEAAVNRLADMHLRASYTCLSLGFYLDRDDAALGGGGHFFRELAEEKR 60
Query: 438 EG--SERLLKMQNQRGGRALFQDVQKPSQDEWGKTQDAMEAALHLEKGLNQALVDLHALG 611
EG + R LKMQNQRGGRALFQDVQKP+QDEWGKT DA EAAL LEK NQAL+DLHALG
Sbjct: 61 EGEGAGRFLKMQNQRGGRALFQDVQKPAQDEWGKTLDATEAALLLEKSRNQALLDLHALG 120
Query: 612 SARADPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLSGP 731
SARADPHLCDFL+NHFLDEEVKLI+K GDHLTNLR P
Sbjct: 121 SARADPHLCDFLDNHFLDEEVKLIEKTGDHLTNLRSWPPP 160
Score = 78.2 bits (191), Expect(2) = 4e-83
Identities = 40/68 (58%), Positives = 47/68 (69%), Gaps = 4/68 (5%)
Frame = +2
Query: 731 PGWAGRVPLRKAHTQARLGISGSQGPWRRSSGCWAFCG---KPF-LQPRSTILNTLEPSP 898
PGWAGR+ RKAH+QARLG SG Q P R SSG G +PF +QPR + L LEP P
Sbjct: 160 PGWAGRLSFRKAHSQARLGASGDQQPLRGSSGNPPVPGLVPEPFPMQPRGSFLTILEPFP 219
Query: 899 KSWTKWKQ 922
K+WTKW+Q
Sbjct: 220 KTWTKWRQ 227
>ref|XP_850798.1| PREDICTED: similar to ferritin light chain 1 [Canis familiaris].
Length = 232
Score = 250 bits (639), Expect(2) = 2e-81
Identities = 129/160 (80%), Positives = 137/160 (85%), Gaps = 2/160 (1%)
Frame = +3
Query: 258 MSSQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDVALEGVSHFFRELAEEKR 437
MSSQ+RQN STEVEA VNRL +MHL+ASYT LSLGFY +RDD ALEG HFFRELAEEKR
Sbjct: 1 MSSQIRQNSSTEVEAAVNRLADMHLRASYTCLSLGFYLDRDDAALEGGGHFFRELAEEKR 60
Query: 438 EG--SERLLKMQNQRGGRALFQDVQKPSQDEWGKTQDAMEAALHLEKGLNQALVDLHALG 611
EG + R LKMQNQRGGRALFQDVQKP+QDEWGKT DA EAAL LEK LNQAL+DLHALG
Sbjct: 61 EGEGAGRFLKMQNQRGGRALFQDVQKPAQDEWGKTLDATEAALLLEKSLNQALLDLHALG 120
Query: 612 SARADPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLSGP 731
ARADPHLCDFL+ HFLDEEVKLIKK GDHLTNLR P
Sbjct: 121 PARADPHLCDFLDIHFLDEEVKLIKKTGDHLTNLRSWPPP 160
Score = 71.6 bits (174), Expect(2) = 2e-81
Identities = 38/73 (52%), Positives = 44/73 (60%), Gaps = 9/73 (12%)
Frame = +2
Query: 731 PGWAGRVPLRKAHTQARLGISGSQGPWRRSSG--------CWAFCGKPF-LQPRSTILNT 883
PGWAGRV RKAH+QARLG G Q P R SSG +PF +QP + L
Sbjct: 160 PGWAGRVSFRKAHSQARLGAPGDQQPLRGSSGNPPPPPPPGAGLVPEPFPMQPLGSFLTI 219
Query: 884 LEPSPKSWTKWKQ 922
LEP PK+WTKW+Q
Sbjct: 220 LEPFPKTWTKWRQ 232
>ref|XP_541621.2| PREDICTED: similar to ferritin light chain 1 [Canis familiaris].
Length = 258
Score = 269 bits (688), Expect = 3e-72
Identities = 141/247 (57%), Positives = 165/247 (66%), Gaps = 4/247 (1%)
Frame = +3
Query: 51 QCARRSPGSVSCFNSVWTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG----TSQ 218
Q ARR+PG CF+ W E G SQ
Sbjct: 2 QSARRAPGPAPCFSRPWAEQTQGHPLFPAPTTFQPVLQPQPPEPPPQPPSASGGPTGCSQ 61
Query: 219 HHFLSLAPYCRPAMSSQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDVALEG 398
F+S+AP C S + RQNYS EVE+ ++ L NMHL+AS TYLSL FYF+ +VALE
Sbjct: 62 PRFVSIAPRCTSTTSCRGRQNYSAEVESSISCLANMHLRASNTYLSLAFYFDCSEVALEA 121
Query: 399 VSHFFRELAEEKREGSERLLKMQNQRGGRALFQDVQKPSQDEWGKTQDAMEAALHLEKGL 578
+ HFFRELA EK EG++RLLK+Q QR G ALFQDVQKPS D+WGK DAME A+ LEK L
Sbjct: 122 LGHFFRELAREKHEGAQRLLKLQTQRVGNALFQDVQKPSHDKWGKALDAMETAVVLEKNL 181
Query: 579 NQALVDLHALGSARADPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLSGPQAGLGEYLF 758
N+AL+DLHAL SA+AD HLCDFLE HFL +EVKL+K+MGDHLTNLRRL+ P GLGEYLF
Sbjct: 182 NEALLDLHALASAQADAHLCDFLEGHFLGQEVKLLKEMGDHLTNLRRLACPPVGLGEYLF 241
Query: 759 ERLTLKH 779
ERLTLKH
Sbjct: 242 ERLTLKH 248
>ref|XP_852243.1| PREDICTED: similar to Ferritin light chain 1 (Ferritin L subunit 1)
[Canis familiaris].
Length = 328
Score = 268 bits (686), Expect = 4e-72
Identities = 152/247 (61%), Positives = 165/247 (66%), Gaps = 2/247 (0%)
Frame = +3
Query: 48 RQCARRSPGSVSCFNSVWTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTSQHHF 227
RQC + GSVSCFNSVWTE +S+H
Sbjct: 95 RQCFQWFCGSVSCFNSVWTEQTQGCPFYQPTATLRPFFQSQLSEPSSWPSSAT-SSEHPS 153
Query: 228 LSLAPYCRPAMSSQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDVALEGVSH 407
L+L P +SSQ+ QNYSTEVEA VN L+NMHL+ASYTYLSLGFYF+ DDVALEGV H
Sbjct: 154 LNLIPCPGSTVSSQICQNYSTEVEAAVNHLVNMHLRASYTYLSLGFYFDHDDVALEGVGH 213
Query: 408 FFRELAEEKREGSERLLKMQNQRGGRALFQDVQKPSQDEWGKTQDAMEAALHLEKGLNQA 587
FF ELAEE N + QDVQKPSQDEWGKT DAMEAAL LEK LNQA
Sbjct: 214 FFCELAEE------------NAAAVPSSSQDVQKPSQDEWGKTLDAMEAALLLEKSLNQA 261
Query: 588 LVDLHA--LGSARADPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLSGPQAGLGEYLFE 761
L+D + LGSA DPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRL+ PQAGLGEYLFE
Sbjct: 262 LLDSGSACLGSAHMDPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLATPQAGLGEYLFE 321
Query: 762 RLTLKHD 782
RL LKHD
Sbjct: 322 RLILKHD 328
>ref|XP_548949.2| PREDICTED: similar to Ferritin light chain (Ferritin L subunit)
[Canis familiaris].
Length = 249
Score = 256 bits (653), Expect = 3e-68
Identities = 128/192 (66%), Positives = 153/192 (79%)
Frame = +3
Query: 207 GTSQHHFLSLAPYCRPAMSSQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDV 386
G HH L LAP+C+P MS+Q+ QNYS +VEA + ++N+HLQASYTY SL F+F ++V
Sbjct: 59 GACGHHTLCLAPHCKPTMSTQINQNYSAKVEAALQYVVNLHLQASYTYRSLCFHFEGNNV 118
Query: 387 ALEGVSHFFRELAEEKREGSERLLKMQNQRGGRALFQDVQKPSQDEWGKTQDAMEAALHL 566
AL+G+ FF+ELAE KREG++RLLKM+NQ G L D Q S+D W + DAMEAA+ L
Sbjct: 119 ALKGMGIFFQELAERKREGAQRLLKMRNQWSGDPLLSDGQL-SEDPWRGSVDAMEAAMAL 177
Query: 567 EKGLNQALVDLHALGSARADPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLSGPQAGLG 746
EK LNQAL+DLHALGSA D LCDFLE HF+DEE+KLIKKMGDHLTNLRRLSGPQAGL
Sbjct: 178 EKNLNQALLDLHALGSANTDRRLCDFLEKHFVDEEMKLIKKMGDHLTNLRRLSGPQAGLS 237
Query: 747 EYLFERLTLKHD 782
EYLFERLTLKH+
Sbjct: 238 EYLFERLTLKHN 249
>ref|NP_001003080.1| ferritin heavy chain [Canis lupus familiaris].
Length = 183
Score = 211 bits (536), Expect = 1e-54
Identities = 94/173 (54%), Positives = 134/173 (77%)
Frame = +3
Query: 255 AMSSQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDVALEGVSHFFRELAEEK 434
A SQVRQNY + EA +NR IN+ L ASY YLS+ +YF+RDDVAL+ + +F + E+
Sbjct: 4 ASPSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEE 63
Query: 435 REGSERLLKMQNQRGGRALFQDVQKPSQDEWGKTQDAMEAALHLEKGLNQALVDLHALGS 614
RE +E+L+K+QNQRGGR QD++KP +D+W +AME ALHLEK +NQ+L++LH L +
Sbjct: 64 REHAEKLMKLQNQRGGRIFLQDIKKPDRDDWENGLNAMECALHLEKSVNQSLLELHKLAT 123
Query: 615 ARADPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLSGPQAGLGEYLFERLTL 773
+ DPHLCDF+E H+L+E+VK IK++GDH+TNLR++ P++G+ EYLF++ TL
Sbjct: 124 DKNDPHLCDFIETHYLNEQVKSIKELGDHVTNLRKMGAPESGMAEYLFDKHTL 176
>ref|NP_001180585.1| ferritin, heavy polypeptide 1 [Canis lupus familiaris].
Length = 183
Score = 211 bits (536), Expect = 1e-54
Identities = 94/173 (54%), Positives = 134/173 (77%)
Frame = +3
Query: 255 AMSSQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDVALEGVSHFFRELAEEK 434
A SQVRQNY + EA +NR IN+ L ASY YLS+ +YF+RDDVAL+ + +F + E+
Sbjct: 4 ASPSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEE 63
Query: 435 REGSERLLKMQNQRGGRALFQDVQKPSQDEWGKTQDAMEAALHLEKGLNQALVDLHALGS 614
RE +E+L+K+QNQRGGR QD++KP +D+W +AME ALHLEK +NQ+L++LH L +
Sbjct: 64 REHAEKLMKLQNQRGGRIFLQDIKKPDRDDWENGLNAMECALHLEKSVNQSLLELHKLAT 123
Query: 615 ARADPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLSGPQAGLGEYLFERLTL 773
+ DPHLCDF+E H+L+E+VK IK++GDH+TNLR++ P++G+ EYLF++ TL
Sbjct: 124 DKNDPHLCDFIETHYLNEQVKSIKELGDHVTNLRKMGAPESGMAEYLFDKHTL 176
>ref|XP_535550.2| PREDICTED: similar to Ferritin heavy chain (Ferritin H subunit)
(Proliferation-inducing gene 15 protein) [Canis
familiaris].
Length = 183
Score = 167 bits (424), Expect = 1e-41
Identities = 73/155 (47%), Positives = 116/155 (74%)
Frame = +3
Query: 309 NRLINMHLQASYTYLSLGFYFNRDDVALEGVSHFFRELAEEKREGSERLLKMQNQRGGRA 488
+R ++ L AS LS+ + +RDDVAL+ ++ +F + E+RE +E+L+K+QNQRGGR
Sbjct: 22 HRRASVELYASCVSLSVSYRLDRDDVALKNLAEYFLHQSHEEREHAEKLMKLQNQRGGRT 81
Query: 489 LFQDVQKPSQDEWGKTQDAMEAALHLEKGLNQALVDLHALGSARADPHLCDFLENHFLDE 668
QD++KP +D+W ++ME ALHLEK +NQ+ ++LH L + + DPHLCDF+E H+L+E
Sbjct: 82 FLQDIKKPDRDDWENGLNSMECALHLEKSVNQSPLELHKLATDKNDPHLCDFIETHYLNE 141
Query: 669 EVKLIKKMGDHLTNLRRLSGPQAGLGEYLFERLTL 773
+VK IK++GDH+T+LR++ P++G+ EYLF++ L
Sbjct: 142 QVKSIKELGDHVTSLRKMGAPESGMAEYLFDKHAL 176
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,554,224
Number of extensions: 1125777
Number of successful extensions: 5005
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 4961
Number of HSP's successfully gapped: 27
Length of query: 320
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 217
Effective length of database: 15,440,896
Effective search space: 3350674432
Effective search space used: 3350674432
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001772
(961 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000137.2| ferritin light chain [Homo sapiens]. 313 2e-85
Alignment gi|NP_002023.2| ferritin heavy chain [Homo sapiens]. 211 8e-55
Alignment gi|NP_803431.1| ferritin, mitochondrial precursor [Homo sapiens]. 197 1e-50
Alignment gi|NP_114100.1| ferritin heavy polypeptide-like 17 [Homo sapien... 182 3e-46
>ref|NP_000137.2| ferritin light chain [Homo sapiens].
Length = 175
Score = 313 bits (801), Expect = 2e-85
Identities = 151/175 (86%), Positives = 165/175 (94%)
Frame = +3
Query: 258 MSSQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDVALEGVSHFFRELAEEKR 437
MSSQ+RQNYST+VEA VN L+N++LQASYTYLSLGFYF+RDDVALEGVSHFFRELAEEKR
Sbjct: 1 MSSQIRQNYSTDVEAAVNSLVNLYLQASYTYLSLGFYFDRDDVALEGVSHFFRELAEEKR 60
Query: 438 EGSERLLKMQNQRGGRALFQDVQKPSQDEWGKTQDAMEAALHLEKGLNQALVDLHALGSA 617
EG ERLLKMQNQRGGRALFQD++KP++DEWGKT DAM+AA+ LEK LNQAL+DLHALGSA
Sbjct: 61 EGYERLLKMQNQRGGRALFQDIKKPAEDEWGKTPDAMKAAMALEKKLNQALLDLHALGSA 120
Query: 618 RADPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLSGPQAGLGEYLFERLTLKHD 782
R DPHLCDFLE HFLDEEVKLIKKMGDHLTNL RL GP+AGLGEYLFERLTLKHD
Sbjct: 121 RTDPHLCDFLETHFLDEEVKLIKKMGDHLTNLHRLGGPEAGLGEYLFERLTLKHD 175
>ref|NP_002023.2| ferritin heavy chain [Homo sapiens].
Length = 183
Score = 211 bits (537), Expect = 8e-55
Identities = 95/173 (54%), Positives = 134/173 (77%)
Frame = +3
Query: 255 AMSSQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDVALEGVSHFFRELAEEK 434
A +SQVRQNY + EA +NR IN+ L ASY YLS+ +YF+RDDVAL+ + +F + E+
Sbjct: 4 ASTSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEE 63
Query: 435 REGSERLLKMQNQRGGRALFQDVQKPSQDEWGKTQDAMEAALHLEKGLNQALVDLHALGS 614
RE +E+L+K+QNQRGGR QD++KP D+W +AME ALHLEK +NQ+L++LH L +
Sbjct: 64 REHAEKLMKLQNQRGGRIFLQDIKKPDCDDWESGLNAMECALHLEKNVNQSLLELHKLAT 123
Query: 615 ARADPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLSGPQAGLGEYLFERLTL 773
+ DPHLCDF+E H+L+E+VK IK++GDH+TNLR++ P++GL EYLF++ TL
Sbjct: 124 DKNDPHLCDFIETHYLNEQVKAIKELGDHVTNLRKMGAPESGLAEYLFDKHTL 176
>ref|NP_803431.1| ferritin, mitochondrial precursor [Homo sapiens].
Length = 242
Score = 197 bits (501), Expect = 1e-50
Identities = 92/173 (53%), Positives = 128/173 (73%)
Frame = +3
Query: 264 SQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDVALEGVSHFFRELAEEKREG 443
S+VRQN+ + EA +NR IN+ L ASY YLS+ +YF+RDDVAL S +F + E+ E
Sbjct: 66 SRVRQNFHPDSEAAINRQINLELYASYVYLSMAYYFSRDDVALNNFSRYFLHQSREETEH 125
Query: 444 SERLLKMQNQRGGRALFQDVQKPSQDEWGKTQDAMEAALHLEKGLNQALVDLHALGSARA 623
+E+L+++QNQRGGR QD++KP QD+W AME AL LEK +NQ+L++LHAL S +
Sbjct: 126 AEKLMRLQNQRGGRIRLQDIKKPEQDDWESGLHAMECALLLEKNVNQSLLELHALASDKG 185
Query: 624 DPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLSGPQAGLGEYLFERLTLKHD 782
DPHLCDFLE ++L+E+VK IK++GDH+ NL ++ P AGL EYLF+ TL ++
Sbjct: 186 DPHLCDFLETYYLNEQVKSIKELGDHVHNLVKMGAPDAGLAEYLFDTHTLGNE 238
>ref|NP_114100.1| ferritin heavy polypeptide-like 17 [Homo sapiens].
Length = 183
Score = 182 bits (463), Expect = 3e-46
Identities = 85/173 (49%), Positives = 120/173 (69%)
Frame = +3
Query: 255 AMSSQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDVALEGVSHFFRELAEEK 434
A SQVRQ Y T +A +N I + L SY YLS+ FYFNRDDVALE +F L+++K
Sbjct: 4 AQPSQVRQKYDTNCDAAINSHITLELYTSYLYLSMAFYFNRDDVALENFFRYFLRLSDDK 63
Query: 435 REGSERLLKMQNQRGGRALFQDVQKPSQDEWGKTQDAMEAALHLEKGLNQALVDLHALGS 614
E +++L+++QN RGG D++KP W AME+A HLEK +NQ+L+DL+ L
Sbjct: 64 MEHAQKLMRLQNLRGGHICLHDIRKPECQGWESGLVAMESAFHLEKNVNQSLLDLYQLAV 123
Query: 615 ARADPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLSGPQAGLGEYLFERLTL 773
+ DP LC FLE+H+L E+VK IK++G +++NLR++ P+AGL EYLF++LTL
Sbjct: 124 EKGDPQLCHFLESHYLHEQVKTIKELGGYVSNLRKICSPEAGLAEYLFDKLTL 176
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,590,982
Number of extensions: 1095268
Number of successful extensions: 4667
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4662
Number of HSP's successfully gapped: 4
Length of query: 320
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 217
Effective length of database: 14,901,872
Effective search space: 3233706224
Effective search space used: 3233706224
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001772
(961 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034370.2| ferritin light chain 1 [Mus musculus]. 304 6e-83
Alignment gi|XP_486478.4| PREDICTED: ferritin light chain 1-like [Mus mus... 281 7e-76
Alignment gi|NP_034369.1| ferritin heavy chain [Mus musculus]. 212 4e-55
Alignment gi|NP_080562.2| ferritin, mitochondrial precursor [Mus musculus]. 197 1e-50
Alignment gi|NP_001033786.1| ferritin, heavy polypeptide-like [Mus muscul... 155 3e-38
Alignment gi|NP_001078994.1| hypothetical protein LOC434727 [Mus musculus]. 153 2e-37
Alignment gi|NP_001078993.1| hypothetical protein LOC434726 [Mus musculus]. 152 3e-37
Alignment gi|NP_112551.2| ferritin heavy polypeptide-like 17 [Mus musculu... 147 2e-35
Alignment gi|NP_001092796.1| hypothetical protein LOC100042782 [Mus muscu... 146 2e-35
Alignment gi|XP_486618.1| PREDICTED: ferritin heavy polypeptide-like 17-l... 144 8e-35
>ref|NP_034370.2| ferritin light chain 1 [Mus musculus].
Length = 183
Score = 304 bits (779), Expect = 6e-83
Identities = 149/183 (81%), Positives = 167/183 (91%), Gaps = 8/183 (4%)
Frame = +3
Query: 258 MSSQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDVALEGVSHFFRELAEEKR 437
M+SQ+RQNYSTEVEA VNRL+N+HL+ASYTYLSLGF+F+RDDVALEGV HFFRELAEEKR
Sbjct: 1 MTSQIRQNYSTEVEAAVNRLVNLHLRASYTYLSLGFFFDRDDVALEGVGHFFRELAEEKR 60
Query: 438 EGSERLLKMQNQRGGRALFQDVQKPSQDEWGKTQDAMEAALHLEKGLNQALVDLHALGSA 617
EG+ERLL+ QN RGGRALFQDVQKPSQDEWGKTQ+AMEAAL +EK LNQAL+DLHALGSA
Sbjct: 61 EGAERLLEFQNDRGGRALFQDVQKPSQDEWGKTQEAMEAALAMEKNLNQALLDLHALGSA 120
Query: 618 RADPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLSG--------PQAGLGEYLFERLTL 773
RADPHLCDFLE+H+LD+EVKLIKKMG+HLTNLRR++G PQ LGEYLFERLTL
Sbjct: 121 RADPHLCDFLESHYLDKEVKLIKKMGNHLTNLRRVAGPQPAQTGAPQGSLGEYLFERLTL 180
Query: 774 KHD 782
KHD
Sbjct: 181 KHD 183
>ref|XP_486478.4| PREDICTED: ferritin light chain 1-like [Mus musculus].
Length = 276
Score = 281 bits (718), Expect = 7e-76
Identities = 137/175 (78%), Positives = 156/175 (89%)
Frame = +3
Query: 210 TSQHHFLSLAPYCRPAMSSQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDVA 389
TS H + Y AM+SQ+RQNYSTEVEA VN L+N+HL+ASYTYLSLGF+F+ DDVA
Sbjct: 44 TSLHRLFVVNSYSGSAMTSQIRQNYSTEVEAAVNCLVNLHLRASYTYLSLGFFFDPDDVA 103
Query: 390 LEGVSHFFRELAEEKREGSERLLKMQNQRGGRALFQDVQKPSQDEWGKTQDAMEAALHLE 569
LEG+ HFFRELAEEKREG+ERLL++QN GG ALFQDVQKPSQDEWGKTQ+AMEAAL LE
Sbjct: 104 LEGIGHFFRELAEEKREGAERLLELQNDLGGCALFQDVQKPSQDEWGKTQEAMEAALALE 163
Query: 570 KGLNQALVDLHALGSARADPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLSGPQ 734
K LNQAL+DLHALGSARADPHLCDFLE+HFLD+EVKLIKKMG+HLTNLRR++GPQ
Sbjct: 164 KNLNQALLDLHALGSARADPHLCDFLESHFLDKEVKLIKKMGNHLTNLRRVAGPQ 218
>ref|NP_034369.1| ferritin heavy chain [Mus musculus].
Length = 182
Score = 212 bits (539), Expect = 4e-55
Identities = 97/179 (54%), Positives = 135/179 (75%)
Frame = +3
Query: 255 AMSSQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDVALEGVSHFFRELAEEK 434
A SQVRQNY + EA +NR IN+ L ASY YLS+ YF+RDDVAL+ + +F + E+
Sbjct: 4 ASPSQVRQNYHQDAEAAINRQINLELYASYVYLSMSCYFDRDDVALKNFAKYFLHQSHEE 63
Query: 435 REGSERLLKMQNQRGGRALFQDVQKPSQDEWGKTQDAMEAALHLEKGLNQALVDLHALGS 614
RE +E+L+K+QNQRGGR QD++KP +D+W +AME ALHLEK +NQ+L++LH L +
Sbjct: 64 REHAEKLMKLQNQRGGRIFLQDIKKPDRDDWESGLNAMECALHLEKSVNQSLLELHKLAT 123
Query: 615 ARADPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLSGPQAGLGEYLFERLTLKHD*ES 791
+ DPHLCDF+E ++L E+VK IK++GDH+TNLR++ P+AG+ EYLF++ TL H ES
Sbjct: 124 DKNDPHLCDFIETYYLSEQVKSIKELGDHVTNLRKMGAPEAGMAEYLFDKHTLGHGDES 182
>ref|NP_080562.2| ferritin, mitochondrial precursor [Mus musculus].
Length = 237
Score = 197 bits (500), Expect = 1e-50
Identities = 94/170 (55%), Positives = 125/170 (73%)
Frame = +3
Query: 264 SQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDVALEGVSHFFRELAEEKREG 443
S+VRQN+ + EA +NR IN+ L ASY YLS+ +YF+RDDVAL S +F + E+RE
Sbjct: 62 SRVRQNFHPDSEAAINRQINLELYASYVYLSMAYYFSRDDVALYNFSKYFLRQSLEEREH 121
Query: 444 SERLLKMQNQRGGRALFQDVQKPSQDEWGKTQDAMEAALHLEKGLNQALVDLHALGSARA 623
+E+L+K+QNQRGGR QD++KP +D+W AME AL LEK +NQ+L+DLH L S +
Sbjct: 122 AEKLMKLQNQRGGRICLQDIKKPDKDDWECGLRAMECALLLEKNVNQSLLDLHTLASEKG 181
Query: 624 DPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLSGPQAGLGEYLFERLTL 773
DPHLCDFLE H+L E+VK IK++GDH+ NL + P AGL EYLF++ TL
Sbjct: 182 DPHLCDFLETHYLHEQVKSIKELGDHVHNLVTMGAPAAGLAEYLFDKHTL 231
>ref|NP_001033786.1| ferritin, heavy polypeptide-like [Mus musculus].
Length = 176
Score = 155 bits (393), Expect = 3e-38
Identities = 72/170 (42%), Positives = 111/170 (65%)
Frame = +3
Query: 264 SQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDVALEGVSHFFRELAEEKREG 443
S+VRQNY + E VN I ++LQ+SY Y+S+ FYF+RDDVA E FF + +
Sbjct: 6 SRVRQNYDWQCEDAVNTHIQLYLQSSYEYMSMAFYFDRDDVAQENFKRFFLTKSHNCQTS 65
Query: 444 SERLLKMQNQRGGRALFQDVQKPSQDEWGKTQDAMEAALHLEKGLNQALVDLHALGSARA 623
+E + +QN+RGG QD+ +P ++ W AME A H+E +NQ+L+++H + +
Sbjct: 66 AEMFMHLQNKRGGCISLQDIARPERNNWHGGFQAMECAFHMEMLINQSLLNMHEVAKEKG 125
Query: 624 DPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLSGPQAGLGEYLFERLTL 773
DPHLC FLE + LD++V ++K+M +LTNLR++ + L EYLF++L+L
Sbjct: 126 DPHLCHFLEQNCLDQQVDILKEMSGYLTNLRQMGAVEHNLAEYLFDKLSL 175
>ref|NP_001078994.1| hypothetical protein LOC434727 [Mus musculus].
Length = 176
Score = 153 bits (386), Expect = 2e-37
Identities = 71/170 (41%), Positives = 108/170 (63%)
Frame = +3
Query: 264 SQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDVALEGVSHFFRELAEEKREG 443
S+VRQNY + E +N I + L ASY Y+S+ YF+RDDVA E FF + +
Sbjct: 6 SRVRQNYDWQCEDAINTHIQLRLYASYVYMSMAVYFDRDDVAQENFKRFFLTKSHNCQTS 65
Query: 444 SERLLKMQNQRGGRALFQDVQKPSQDEWGKTQDAMEAALHLEKGLNQALVDLHALGSARA 623
+E + +QN+RGG QD+ +P +D W AME A H+E +NQ+L+++H + +
Sbjct: 66 AEMFMHLQNKRGGCISLQDIARPERDSWHGGFQAMECAFHMEMLINQSLLNMHEVAKEKG 125
Query: 624 DPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLSGPQAGLGEYLFERLTL 773
DPHLC FLE + LD++V ++K+M +LTNLR++ + L EYLF++L+L
Sbjct: 126 DPHLCHFLEQNCLDQQVDILKEMSGYLTNLRQMGAVEHNLAEYLFDKLSL 175
>ref|NP_001078993.1| hypothetical protein LOC434726 [Mus musculus].
Length = 176
Score = 152 bits (385), Expect = 3e-37
Identities = 71/170 (41%), Positives = 108/170 (63%)
Frame = +3
Query: 264 SQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDVALEGVSHFFRELAEEKREG 443
S+VRQNY + E +N I + L ASY Y+S+ YF+RDDVA E FF + +
Sbjct: 6 SRVRQNYDWQCEDAINTHIQLRLYASYVYMSMAVYFDRDDVAQENFKRFFLTKSHNCQTS 65
Query: 444 SERLLKMQNQRGGRALFQDVQKPSQDEWGKTQDAMEAALHLEKGLNQALVDLHALGSARA 623
+E + +QN+RGG QD+ +P +D W AME A H+E +NQ+L+++H + +
Sbjct: 66 AEMFMHLQNKRGGCISLQDIARPERDSWHGGFQAMECAFHMEMLINQSLLNMHEVAKEKG 125
Query: 624 DPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLSGPQAGLGEYLFERLTL 773
DPHLC FLE + LD++V ++K+M +LTNLR++ + L EYLF++L+L
Sbjct: 126 DPHLCHFLEQNCLDQQVDILKEMSGYLTNLRQMGAIEHNLAEYLFDKLSL 175
>ref|NP_112551.2| ferritin heavy polypeptide-like 17 [Mus musculus].
Length = 176
Score = 147 bits (370), Expect = 2e-35
Identities = 68/170 (40%), Positives = 108/170 (63%)
Frame = +3
Query: 264 SQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDVALEGVSHFFRELAEEKREG 443
S+++QNY + E +N I + L ASY Y+S+ YF+RDDVA E FF + +
Sbjct: 6 SRMQQNYDWQCEDAINTHIQLCLYASYEYMSMAVYFDRDDVAQENFKRFFLTKSHNCQTS 65
Query: 444 SERLLKMQNQRGGRALFQDVQKPSQDEWGKTQDAMEAALHLEKGLNQALVDLHALGSARA 623
+E + +QN+RGG + Q + +P +D W AME A H+E +NQ+L+++H + +
Sbjct: 66 AEMFMHLQNKRGGCSSLQGIARPERDSWHGGFQAMECAFHMEMLINQSLLNMHEVAKEKG 125
Query: 624 DPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLSGPQAGLGEYLFERLTL 773
DPHLC FLE + LD++V ++K+M +LTNLR++ + L EYLF++L+L
Sbjct: 126 DPHLCHFLEQNCLDQQVDILKEMSGYLTNLRQMGAVEHNLAEYLFDKLSL 175
>ref|NP_001092796.1| hypothetical protein LOC100042782 [Mus musculus].
Length = 176
Score = 146 bits (369), Expect = 2e-35
Identities = 68/170 (40%), Positives = 108/170 (63%)
Frame = +3
Query: 264 SQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDVALEGVSHFFRELAEEKREG 443
S+++QNY + E +N I + L ASY Y+S+ YF+RDDVA E FF + +
Sbjct: 6 SRMQQNYDWQCEDAINTHIQLCLYASYEYMSMAVYFDRDDVAQENFKRFFLTKSHNCQTS 65
Query: 444 SERLLKMQNQRGGRALFQDVQKPSQDEWGKTQDAMEAALHLEKGLNQALVDLHALGSARA 623
+E + +QN+RGG + Q + +P +D W AME A H+E +NQ+L+++H + +
Sbjct: 66 AEMFMHLQNKRGGCSSLQGIARPERDSWHGGFQAMECAFHMEMLINQSLLNMHEVAKEKG 125
Query: 624 DPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLSGPQAGLGEYLFERLTL 773
DPHLC FLE + LD++V ++K+M +LTNLR++ + L EYLF++L+L
Sbjct: 126 DPHLCHFLEQNCLDQQVDILKEMSGYLTNLRQMGAIEHNLAEYLFDKLSL 175
>ref|XP_486618.1| PREDICTED: ferritin heavy polypeptide-like 17-like [Mus musculus].
Length = 172
Score = 144 bits (364), Expect = 8e-35
Identities = 70/170 (41%), Positives = 105/170 (61%)
Frame = +3
Query: 264 SQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDVALEGVSHFFRELAEEKREG 443
S+VRQNY + E +N I + L ASY Y+S+ YF+RDDVA E FF + +
Sbjct: 6 SRVRQNYDWQCEDAINTHIQLRLYASYVYMSMAVYFDRDDVAQENFKRFFLTKSHNCQTS 65
Query: 444 SERLLKMQNQRGGRALFQDVQKPSQDEWGKTQDAMEAALHLEKGLNQALVDLHALGSARA 623
+E + +QN+RGG QD+ +P +D W AME A H+E +NQ+L+++H + +
Sbjct: 66 AEMFMHLQNKRGGCISLQDIARPERDSWHGGFQAMECAFHMEMLINQSLLNMHEVAKEKG 125
Query: 624 DPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLSGPQAGLGEYLFERLTL 773
DPHLC FLE + LD ++K+M +LTNLR++ + L EYLF++L+L
Sbjct: 126 DPHLCHFLEQNCLD----ILKEMSGYLTNLRQMGAVEHNLAEYLFDKLSL 171
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,258,917
Number of extensions: 902682
Number of successful extensions: 4003
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 3986
Number of HSP's successfully gapped: 11
Length of query: 320
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 219
Effective length of database: 12,583,923
Effective search space: 2755879137
Effective search space used: 2755879137
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001772
(961 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127336.1| PREDICTED: ferritin light chain isoform 1 [S... 353 8e-98
Alignment gi|XP_003127337.1| PREDICTED: ferritin light chain isoform 2 [S... 232 2e-61
Alignment gi|XP_003123914.1| PREDICTED: ferritin, mitochondrial-like [Sus... 198 4e-51
Alignment gi|NP_999140.1| ferritin heavy chain [Sus scrofa]. 189 1e-48
Alignment gi|XP_001924726.3| PREDICTED: ferritin heavy chain-like [Sus sc... 184 6e-47
Alignment gi|XP_003360308.1| PREDICTED: ferritin heavy chain-like [Sus sc... 174 6e-44
Alignment gi|XP_003135054.1| PREDICTED: ferritin heavy chain-like [Sus sc... 161 6e-40
Alignment gi|XP_003360304.1| PREDICTED: ferritin heavy chain-like [Sus sc... 161 6e-40
Alignment gi|XP_003360306.1| PREDICTED: hypothetical protein LOC100625302... 159 2e-39
Alignment gi|XP_003135052.1| PREDICTED: ferritin-1, chloroplastic-like [S... 159 2e-39
>ref|XP_003127336.1| PREDICTED: ferritin light chain isoform 1 [Sus scrofa].
Length = 175
Score = 353 bits (906), Expect = 8e-98
Identities = 175/175 (100%), Positives = 175/175 (100%)
Frame = +3
Query: 258 MSSQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDVALEGVSHFFRELAEEKR 437
MSSQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDVALEGVSHFFRELAEEKR
Sbjct: 1 MSSQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDVALEGVSHFFRELAEEKR 60
Query: 438 EGSERLLKMQNQRGGRALFQDVQKPSQDEWGKTQDAMEAALHLEKGLNQALVDLHALGSA 617
EGSERLLKMQNQRGGRALFQDVQKPSQDEWGKTQDAMEAALHLEKGLNQALVDLHALGSA
Sbjct: 61 EGSERLLKMQNQRGGRALFQDVQKPSQDEWGKTQDAMEAALHLEKGLNQALVDLHALGSA 120
Query: 618 RADPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLSGPQAGLGEYLFERLTLKHD 782
RADPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLSGPQAGLGEYLFERLTLKHD
Sbjct: 121 RADPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLSGPQAGLGEYLFERLTLKHD 175
>ref|XP_003127337.1| PREDICTED: ferritin light chain isoform 2 [Sus scrofa].
Length = 127
Score = 232 bits (592), Expect = 2e-61
Identities = 127/175 (72%), Positives = 127/175 (72%)
Frame = +3
Query: 258 MSSQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDVALEGVSHFFRELAEEKR 437
MSSQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDVALEGVSHFFRELAEEKR
Sbjct: 1 MSSQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDVALEGVSHFFRELAEEKR 60
Query: 438 EGSERLLKMQNQRGGRALFQDVQKPSQDEWGKTQDAMEAALHLEKGLNQALVDLHALGSA 617
EGSERLLKMQNQRGGRALFQDVQ
Sbjct: 61 EGSERLLKMQNQRGGRALFQDVQ------------------------------------- 83
Query: 618 RADPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLSGPQAGLGEYLFERLTLKHD 782
NHFLDEEVKLIKKMGDHLTNLRRLSGPQAGLGEYLFERLTLKHD
Sbjct: 84 -----------NHFLDEEVKLIKKMGDHLTNLRRLSGPQAGLGEYLFERLTLKHD 127
>ref|XP_003123914.1| PREDICTED: ferritin, mitochondrial-like [Sus scrofa].
Length = 242
Score = 198 bits (503), Expect = 4e-51
Identities = 92/181 (50%), Positives = 131/181 (72%)
Frame = +3
Query: 240 PYCRPAMSSQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDVALEGVSHFFRE 419
P C P S+VRQN+ + EA +NR IN+ L ASY YLS+ +YF+RDDVAL + +F
Sbjct: 61 PSCAP---SRVRQNFYADSEAAINRQINLELYASYVYLSMAYYFSRDDVALHNFARYFLR 117
Query: 420 LAEEKREGSERLLKMQNQRGGRALFQDVQKPSQDEWGKTQDAMEAALHLEKGLNQALVDL 599
+ E+ E +E+L+++QNQRGG+ QD++KP QD W +AME AL LEK +NQ+L++L
Sbjct: 118 QSREETEHAEKLMRLQNQRGGQICLQDIKKPDQDNWKSGLNAMECALLLEKNVNQSLLEL 177
Query: 600 HALGSARADPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLSGPQAGLGEYLFERLTLKH 779
H L S + DPHLCDFLE H+L+E+VK IK++GDH+ NL ++ P +GL EYLF++ TL +
Sbjct: 178 HTLASDKGDPHLCDFLETHYLNEQVKSIKELGDHVHNLIKMGAPDSGLAEYLFDKHTLGN 237
Query: 780 D 782
+
Sbjct: 238 E 238
>ref|NP_999140.1| ferritin heavy chain [Sus scrofa].
Length = 181
Score = 189 bits (481), Expect = 1e-48
Identities = 87/171 (50%), Positives = 122/171 (71%)
Frame = +3
Query: 261 SSQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDVALEGVSHFFRELAEEKRE 440
SSQVRQNY + EA +NR IN+ L ASY YLS+ +YF+RDDVAL+ + +F + R
Sbjct: 6 SSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHGGRG 65
Query: 441 GSERLLKMQNQRGGRALFQDVQKPSQDEWGKTQDAMEAALHLEKGLNQALVDLHALGSAR 620
+E+L+K+Q QRG R QD+ KP +D+W AME ALH+ K + Q+L++LH L + +
Sbjct: 66 HAEKLMKLQTQRGARIFLQDIMKPERDDWENGLTAMEFALHVVKNVYQSLLELHKLATDK 125
Query: 621 ADPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLSGPQAGLGEYLFERLTL 773
DPHLCDF+E H+L E+VK IK++GDH+TNL R+ P+ G+ EYLF++ TL
Sbjct: 126 NDPHLCDFIETHYLHEQVKAIKELGDHITNLHRMGAPEYGMAEYLFDKHTL 176
>ref|XP_001924726.3| PREDICTED: ferritin heavy chain-like [Sus scrofa].
Length = 350
Score = 184 bits (467), Expect = 6e-47
Identities = 87/185 (47%), Positives = 127/185 (68%), Gaps = 3/185 (1%)
Frame = +3
Query: 228 LSLAPY---CRPAMSSQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDVALEG 398
L+LAP P SQVRQNY E EA +N L+ + L ASY YL++ F F+R+D+AL+
Sbjct: 159 LALAPTPATMLPTPPSQVRQNYDPECEAAINSLVTLELHASYVYLAMAFNFDREDMALKH 218
Query: 399 VSHFFRELAEEKREGSERLLKMQNQRGGRALFQDVQKPSQDEWGKTQDAMEAALHLEKGL 578
++ FF ++E ++ L+ +QN RGGR F D++KP + W AM+ ALHLEKG+
Sbjct: 219 LARFFLHRSQEHTSRAQELMSLQNWRGGRLCFHDIRKPDRHHWESGLKAMQCALHLEKGV 278
Query: 579 NQALVDLHALGSARADPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLSGPQAGLGEYLF 758
NQ+++DLH L + ++D LC FLENH+LD++V+ IK++GDH+T LRR+ P+ EYLF
Sbjct: 279 NQSVLDLHQLATNKSDAQLCHFLENHYLDQQVEFIKELGDHVTTLRRMGAPEDITAEYLF 338
Query: 759 ERLTL 773
++LTL
Sbjct: 339 DKLTL 343
>ref|XP_003360308.1| PREDICTED: ferritin heavy chain-like [Sus scrofa].
Length = 183
Score = 174 bits (441), Expect = 6e-44
Identities = 81/174 (46%), Positives = 118/174 (67%)
Frame = +3
Query: 252 PAMSSQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDVALEGVSHFFRELAEE 431
P SQVR NY E EA +N L + L ASY Y +L F F+R+D+AL+ ++ FF ++E
Sbjct: 3 PTPPSQVRHNYHPECEAALNSLATLELHASYVYQALAFNFDREDMALKHLACFFLRRSQE 62
Query: 432 KREGSERLLKMQNQRGGRALFQDVQKPSQDEWGKTQDAMEAALHLEKGLNQALVDLHALG 611
++ L+ +QN+RGGR F D++KP QD W AM+ ALHLEK ++Q+L+DLH L
Sbjct: 63 HTRRAQELMSLQNRRGGRLCFHDIRKPDQDNWESGLQAMQCALHLEKHVHQSLLDLHQLA 122
Query: 612 SARADPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLSGPQAGLGEYLFERLTL 773
+ + D LC FLE+H+LD++V+ IK++GDH+T L R+ P+ EYLF++LTL
Sbjct: 123 THKNDAQLCHFLESHYLDQQVEFIKELGDHVTMLHRMGAPEDNTAEYLFDKLTL 176
>ref|XP_003135054.1| PREDICTED: ferritin heavy chain-like [Sus scrofa].
Length = 183
Score = 161 bits (407), Expect = 6e-40
Identities = 73/174 (41%), Positives = 119/174 (68%)
Frame = +3
Query: 252 PAMSSQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDVALEGVSHFFRELAEE 431
P SQVR NY E +A +N L+ + L ASY Y +L F +R+D+AL+ ++ F ++E
Sbjct: 3 PTPPSQVRHNYHPECKAALNSLVTLELHASYVYQALAFNLDREDMALKPLARCFLHRSQE 62
Query: 432 KREGSERLLKMQNQRGGRALFQDVQKPSQDEWGKTQDAMEAALHLEKGLNQALVDLHALG 611
S+ L+ +QN+RGGR F+D++KP + WG A++ ALHLEK ++Q+L+DLH L
Sbjct: 63 HTRRSQELMSLQNRRGGRLCFRDIRKPDLEAWGGGLRALQCALHLEKRVHQSLLDLHRLA 122
Query: 612 SARADPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLSGPQAGLGEYLFERLTL 773
+ +++ LC FL++ +LD++V+ IK++GDH+T L ++ P+ + EYLF++LTL
Sbjct: 123 THKSNAQLCHFLKSRYLDQQVEFIKELGDHVTTLSQMGAPEVEMTEYLFDKLTL 176
>ref|XP_003360304.1| PREDICTED: ferritin heavy chain-like [Sus scrofa].
Length = 183
Score = 161 bits (407), Expect = 6e-40
Identities = 73/174 (41%), Positives = 119/174 (68%)
Frame = +3
Query: 252 PAMSSQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDVALEGVSHFFRELAEE 431
P SQVR NY E +A +N L+ + L ASY Y +L F +R+D+AL+ ++ F ++E
Sbjct: 3 PTPPSQVRHNYHPECKAALNSLVTLELHASYVYQALAFNLDREDMALKPLARCFLHRSQE 62
Query: 432 KREGSERLLKMQNQRGGRALFQDVQKPSQDEWGKTQDAMEAALHLEKGLNQALVDLHALG 611
S+ L+ +QN+RGGR F+D++KP + WG A++ ALHLEK ++Q+L+DLH L
Sbjct: 63 HTRRSQELMSLQNRRGGRLCFRDIRKPDLEAWGGGLRALQCALHLEKRVHQSLLDLHRLA 122
Query: 612 SARADPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLSGPQAGLGEYLFERLTL 773
+ +++ LC FL++ +LD++V+ IK++GDH+T L ++ P+ + EYLF++LTL
Sbjct: 123 THKSNAQLCHFLKSRYLDQQVEFIKELGDHVTTLSQMGAPEVEMTEYLFDKLTL 176
>ref|XP_003360306.1| PREDICTED: hypothetical protein LOC100625302 [Sus scrofa].
Length = 677
Score = 159 bits (402), Expect = 2e-39
Identities = 74/170 (43%), Positives = 117/170 (68%)
Frame = +3
Query: 264 SQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDVALEGVSHFFRELAEEKREG 443
SQVRQN+ E EA +N N+ L ASY YL + F F+R+D A + ++ F + E+ E
Sbjct: 502 SQVRQNFHPECEAALNGHANLELHASYAYLLMAFSFDREDGAGKPLARCFLRRSHERSER 561
Query: 444 SERLLKMQNQRGGRALFQDVQKPSQDEWGKTQDAMEAALHLEKGLNQALVDLHALGSARA 623
++ L+ +QN+RGGR F+D++KP + WG A++ ALHLEK ++Q+L+DLH L + ++
Sbjct: 562 AQELMSLQNRRGGRLCFRDIRKPDLEAWGGGLRALQCALHLEKRVHQSLLDLHRLATHKS 621
Query: 624 DPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLSGPQAGLGEYLFERLTL 773
D LC FL++ +LD++V+ IK++GDH+T L ++ P+ + EYLF +LTL
Sbjct: 622 DAQLCHFLKSRYLDQQVEFIKELGDHVTTLSQMGAPELEMAEYLFGKLTL 671
>ref|XP_003135052.1| PREDICTED: ferritin-1, chloroplastic-like [Sus scrofa].
Length = 403
Score = 159 bits (402), Expect = 2e-39
Identities = 74/170 (43%), Positives = 117/170 (68%)
Frame = +3
Query: 264 SQVRQNYSTEVEAFVNRLINMHLQASYTYLSLGFYFNRDDVALEGVSHFFRELAEEKREG 443
SQVRQN+ E EA +N N+ L ASY YL + F F+R+D A + ++ F + E+ E
Sbjct: 228 SQVRQNFHPECEAALNGHANLELHASYAYLLMAFSFDREDGAGKPLARCFLRRSHERSER 287
Query: 444 SERLLKMQNQRGGRALFQDVQKPSQDEWGKTQDAMEAALHLEKGLNQALVDLHALGSARA 623
++ L+ +QN+RGGR F+D++KP + WG A++ ALHLEK ++Q+L+DLH L + ++
Sbjct: 288 AQELMSLQNRRGGRLCFRDIRKPDLEAWGGGLRALQCALHLEKRVHQSLLDLHRLATHKS 347
Query: 624 DPHLCDFLENHFLDEEVKLIKKMGDHLTNLRRLSGPQAGLGEYLFERLTL 773
D LC FL++ +LD++V+ IK++GDH+T L ++ P+ + EYLF +LTL
Sbjct: 348 DAQLCHFLKSRYLDQQVEFIKELGDHVTTLSQMGAPELEMAEYLFGKLTL 397
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,277,170
Number of extensions: 737693
Number of successful extensions: 3200
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 3191
Number of HSP's successfully gapped: 13
Length of query: 320
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 221
Effective length of database: 8,879,129
Effective search space: 1962287509
Effective search space used: 1962287509
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001772
(961 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 759 0.0
Sscrofa_Chr05 700 0.0
Sscrofa_Chr15 648 0.0
Sscrofa_Chr06 617 e-174
Sscrofa_Chr07 541 e-151
Sscrofa_Chr10 531 e-148
Sscrofa_Chr14 515 e-143
Sscrofa_Chr09 460 e-127
gb|GL893735.2| Sus scrofa unplaced genomic scaffold ChrUScaf1620 347 7e-93
Sscrofa_Chr18 285 2e-74
>Sscrofa_Chr04
|| Length = 143465943
Score = 759 bits (383), Expect = 0.0
Identities = 776/899 (86%), Gaps = 9/899 (1%)
Strand = Plus / Plus
Query: 47 gaggcagtgtgctcggcggtcccccggatctgtctcttgcttcaacagtgtttggacgga 106
||||||||| || | || |||| | |||||||||||||||||||||| |||| ||| |||
Sbjct: 11659307 gaggcagtgcgcaccgcagtccactggatctgtctcttgcttcaacactgttgggaagga 11659366
Query: 107 acagacccagggacgccccttgctccagcctccgactaccctccaaccttttttccagtc 166
| |||| || |||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 11659367 agagacgcatggacacccctggctccagcctccgactaccctccaaccttttttccagtt 11659426
Query: 167 gcaaccttcggactccgcctctcagctatcttcagtctccgggaccagccaacaccattt 226
||||| || ||| || || |||| |||||||||||||| ||||||||||| ||||||||
Sbjct: 11659427 gcaacttttggaatcaaccactcaactatcttcagtctctgggaccagccagcaccattt 11659486
Query: 227 tttgagcttagctccttattgccgaccagccatgagctcccaggttcgtcagaattattc 286
|||| |||| ||||||||| |||| || |||||||||||| |||||||| |||||||||
Sbjct: 11659487 tttggacttaactccttattaccgatcaaccatgagctcccgggttcgtcggaattattc 11659546
Query: 287 caccgaggtggaggccttcgtcaaccgcctgatcaacatgcatctgcaggcctcctacac 346
|||| ||| |||||||||| ||||||| |||||||||||||||||||||||||| || |
Sbjct: 11659547 cacccaggcggaggccttcatcaaccgtgtgatcaacatgcatctgcaggcctcccacgc 11659606
Query: 347 ctacctctctct--gggcttctatttcaaccgcgacgatgtggctctggagggcgtgagt 404
|||||||||||| |||||||| ||||||||||| ||||||||||||||||||||| ||
Sbjct: 11659607 ctacctctctctctgggcttctctttcaaccgcggcgatgtggctctggagggcgtaagc 11659666
Query: 405 cannnnnnnc-gcgaattggccgaggagaagcgcgagggttcggagcgtctcttgaaaat 463
|| | | |||| |||||||||||| |||||||| ||||| ||||||| |||
Sbjct: 11659667 cacttaactccgagaatcggccgaggagaatcgcgagggcgaggagcatctcttgcaaag 11659726
Query: 464 gcaaaaccagcgcggtggccgcgccctcttccaggacgtgca-gaaaccatctcaagatg 522
|||||||||||||||||||| |||| ||||||||||||||| ||||||| |||||||||
Sbjct: 11659727 gcaaaaccagcgcggtggccacgccgtcttccaggacgtgcccgaaaccacctcaagatg 11659786
Query: 523 agtggggtaaaacccaggacgctatggaagccgcccttcacttggagaagggactgaacc 582
|||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||| |
Sbjct: 11659787 cgtggggtaaaacccaggacgctatggaagctgccattcacttggagaggggactgaatc 11659846
Query: 583 aggctcttgtggatctgcatgcgctgggttctgcccgcgcagacccccacctctgtgact 642
|||| ||| | ||||||||||| || || ||||||||||||||||| ||||||||||||
Sbjct: 11659847 aggcccttctagatctgcatgccctcggggctgcccgcgcagacccc-acctctgtgact 11659905
Query: 643 tcctggagaaccacttcctggatgaggaggtgaagctcatcaagaagatgggcgaccacc 702
||||||||||||||||||||||||||||| || |||| ||| |||||||||||||||||
Sbjct: 11659906 ccctggagaaccacttcctggatgaggaggcgaggctcctcaggaagatgggcgaccacc 11659965
Query: 703 tgaccaacctgcgcaggctctctggtccccaggctgggctgggcgagtacctcttcgaaa 762
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11659966 tgaccaacctccgcaagctctctggtccccaggctgggctgggcgagtacctcttcgaaa 11660025
Query: 763 ggctcacactcaagcacgactaggaatctctgggagccaggggccttggaggcgctcctc 822
|||||||| || |||||||||||| ||||| |||| ||| |||| | |||||
Sbjct: 11660026 ggctcacatgcaggcacgactaggagcttctggatcccagtagcccctgaggagttcctc 11660085
Query: 823 tgggtgctgggctttctg-cggaaagccctttctgcagccacgaagcaccattcttaa-c 880
|| |||||| ||||| ||||| |||| ||||||||||| | ||||| || | || |
Sbjct: 11660086 tgatgcctgggc-ttctgccggaagcccctctctgcagccacaaggcaccgttttcaacc 11660144
Query: 881 accctggagccctctcccaagtcttggaccaaatggaaacaataaaagctttttgcagc 939
||||||||||||||||||| |||||||||||||| ||||| | |||||||||||||||
Sbjct: 11660145 accctggagccctctcccacatcttggaccaaatgcaaacagt-aaagctttttgcagc 11660202
Score = 105 bits (53), Expect = 4e-20
Identities = 105/121 (86%), Gaps = 1/121 (0%)
Strand = Plus / Plus
Query: 659 cctggatgaggaggtgaagctcatcaagaagatgggcgaccacctgaccaacctgcgcag 718
|||||||||| ||||||| ||||||||||||||||| || |||||||| ||||| | |||
Sbjct: 32162991 cctggatgagcaggtgaaactcatcaagaagatgggtgagcacctgactaacct-cccag 32163049
Query: 719 gctctctggtccccaggctgggctgggcgagtacctcttcgaaaggctcacactcaagca 778
||| |||| |||||||||||| | |||||||| || || ||||||||||| ||||||||
Sbjct: 32163050 gctaactggcccccaggctgggataggcgagtatcttttagaaaggctcaccctcaagca 32163109
Query: 779 c 779
|
Sbjct: 32163110 c 32163110
Score = 67.9 bits (34), Expect = 1e-08
Identities = 96/116 (82%), Gaps = 3/116 (2%)
Strand = Plus / Plus
Query: 256 ccatgagctcccaggttcgtcagaattattccaccgaggtggaggccttcgtcaaccgcc 315
|||||||||||||| | ||||||||| |||||| |||||| |||| ||||||| ||
Sbjct: 32162612 ccatgagctcccagacttgtcagaatttttccactgaggtgaaggc---tgtcaaccacc 32162668
Query: 316 tgatcaacatgcatctgcaggcctcctacacctacctctctctgggcttctatttc 371
|| ||||| ||||| ||||||| |||| |||||||| ||||||||| ||| ||||
Sbjct: 32162669 tggtcaacttgcatttgcaggcttcctgtacctacctgtctctgggcatctgtttc 32162724
>Sscrofa_Chr05
|| Length = 111506441
Score = 700 bits (353), Expect = 0.0
Identities = 750/878 (85%), Gaps = 5/878 (0%)
Strand = Plus / Minus
Query: 51 cagtgtgctcggcggtcccccggatctgtctcttgcttcaacagtgtttggacggaacag 110
|||||||||| || |||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 43703242 cagtgtgctcagcagtcccctggatctgtctcttgcttcaacagtgtttggacagaacag 43703183
Query: 111 acccagggacgccccttgctccagcctccgactaccctccaaccttttttccagtcgcaa 170
||||||||| |||||||| | |||| ||||||| ||||||||||||||||||| |||
Sbjct: 43703182 acccagggatgccccttg-tatagcccccgactaaactccaaccttttttccagtagcag 43703124
Query: 171 ccttcggactccgcctctcagctatcttcagtctccgggaccagccaacaccattttttg 230
|||| ||| || | |||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 43703123 cctttggaatcagtctctcagctatcttcaatctccaggaccagccaacaccattttttg 43703064
Query: 231 agcttagctccttattgccgaccagccatgagctcccaggttcgtcagaattattccacc 290
|||||| |||||||| | || | | ||| ||||||||||| ||||||||||||||||
Sbjct: 43703063 agcttaactccttatcactgatccacagtgaactcccaggttcatcagaattattccacc 43703004
Query: 291 gaggtggaggccttcgtcaaccgcctgatcaacatgcatctgcaggcctcctacacctac 350
||||||| | |||| ||||| ||||||| |||||||||||||| ||||||||||||||
Sbjct: 43703003 aaggtggaagacttcatcaactacctgatcgacatgcatctgcagacctcctacacctac 43702944
Query: 351 ctctctctgggcttctatttcaaccgcgacgatgtggctctggagggcgtgagtcannnn 410
|| |||||| ||||||||||||| | ||| ||||||||||||||||| |||| ||
Sbjct: 43702943 ctttctctgaccttctatttcaactgtgactatgtggctctggagggcctgagccacttt 43702884
Query: 411 nnncgcgaattggccgaggagaagcgcgagggttcggagcgtctcttgaaaatgcaaaac 470
||||||||| |||| |||| |||| |||| | |||||||||||||||||
Sbjct: 43702883 ttctatgaattggccaaggataagcattagggcattgagcatttcttgaaaatgcaaaac 43702824
Query: 471 cagcgcggtggccgcgccctcttccaggacgtgcagaaaccatctcaagatgagtggggt 530
|||| ||||||| ||||||||| ||| ||| |||| ||||||||||||||| |||||
Sbjct: 43702823 cagcatggtggccacgccctcttttgggatgtgaagaagccatctcaagatgaggggggt 43702764
Query: 531 aaaacccaggacgctatggaagccgcccttcacttggagaagggactgaaccaggctctt 590
||||| ||||| ||| | |||| ||| ||||| |||||||||||||||||||||| |||
Sbjct: 43702763 aaaacacaggaaactaagaaagctgccattcacctggagaagggactgaaccaggccctt 43702704
Query: 591 gtggatctgcatgcgctgggttctgcccgcgcagacccccacctctgtgacttcctggag 650
||||||||||||| ||||||||||||| | || || | || |||||||||||||||||
Sbjct: 43702703 ctggatctgcatgccctgggttctgcccacacaagccacaacatctgtgacttcctggag 43702644
Query: 651 aaccacttcctggatgaggaggtgaagctcatcaagaagatgggcgaccacctgaccaac 710
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 43702643 aatcacttcctggatgaggaggtgaagctcatcaagaagatgggtgaccacctgaccaac 43702584
Query: 711 ctgcgcaggctctctggtccccaggctgggctgggcgagtacctcttcgaaaggctcaca 770
|| |||||||||||||||||||| ||||||||| || ||||| ||| |||||||||||
Sbjct: 43702583 ctctgcaggctctctggtccccagcctgggctggttgaatacctattcaaaaggctcaca 43702524
Query: 771 ctcaagcacgactaggaatctctgggagccaggggccttggaggcgctcctctgggtgct 830
||||| || ||||||||| |||||| |||| |||||| || | |||||||||| ||
Sbjct: 43702523 ctcaaacatgactaggaacctctggagcccagtggcctttgaagagctcctctggtgcct 43702464
Query: 831 gggctttctgcggaaagccctttctgcagccacgaag-caccattcttaa-caccctgga 888
|||| ||||| |||| ||||||||| ||||| |||| ||||||| |||| |||||||||
Sbjct: 43702463 gggc-ttctgtggaagcccctttctgtagcca-gaagtcaccatttttaaccaccctgga 43702406
Query: 889 gccctctcccaagtcttggaccaaatggaaacaataaa 926
|||||||||||| |||||||||||||||||||||||||
Sbjct: 43702405 gccctctcccaattcttggaccaaatggaaacaataaa 43702368
Score = 81.8 bits (41), Expect = 6e-13
Identities = 135/165 (81%), Gaps = 1/165 (0%)
Strand = Plus / Plus
Query: 207 gggaccagccaacaccattttttgagcttagctccttattgccgaccagccatgagctcc 266
|||||||||||||||| ||| || | |||||| || | |||| |||| ||| ||||||
Sbjct: 56852689 gggaccagccaacaccgctttctgtgtttagcttctcactgccaaccaaccaa-agctcc 56852747
Query: 267 caggttcgtcagaattattccaccgaggtggaggccttcgtcaaccgcctgatcaacatg 326
|| ||||||||||| | |||||| ||||| ||||| | |||||| | | ||||| ||
Sbjct: 56852748 caaattcgtcagaatgagtccacccaggtgaaggccgccatcaacctcacggtcaacctg 56852807
Query: 327 catctgcaggcctcctacacctacctctctctgggcttctatttc 371
||||||||||||||| ||||||||||||||| |||||| |||||
Sbjct: 56852808 catctgcaggcctcccacacctacctctctcctggcttccatttc 56852852
>Sscrofa_Chr15
|| Length = 157681621
Score = 648 bits (327), Expect = 0.0
Identities = 729/863 (84%), Gaps = 13/863 (1%)
Strand = Plus / Minus
Query: 64 ggtcccccggatctgtctcttgcttcaacagtgtttggacggaacagacccagggacgcc 123
|||||| ||||||||||||||||||||||||| || || | || ||||||||||| |||
Sbjct: 133584371 ggtccctcggatctgtctcttgcttcaacagtacttagatg-aagagacccagggatgcc 133584313
Query: 124 ccttgctccagcctccgactaccctccaaccttttttccagtcgcaaccttcggactccg 183
||||||||| ||||| ||| ||||||| |||||||||||||| || ||||| || | |
Sbjct: 133584312 gcttgctccaacctccaacttccctccagccttttttccagtcacagccttcagaattag 133584253
Query: 184 cctctcagctatcttcagtctccgggaccagccaacaccattttttgagcttagctcctt 243
|| ||||| ||||||| ||||| |||||||||||||||||| ||||||||||| ||||||
Sbjct: 133584252 ccactcagatatcttcggtctctgggaccagccaacaccatattttgagcttaactcctt 133584193
Query: 244 attgccgaccagccatgagctcccaggttcgtcagaattattccaccgaggtggaggcct 303
|||||| | || ||||||||||| ||||| ||||||||||||||||||||||||| ||||
Sbjct: 133584192 attgccaatcaaccatgagctcctaggttggtcagaattattccaccgaggtggatgcct 133584133
Query: 304 tcgtcaaccgcctgatcaacatgcatctgcaggcctcctacacctacctctctctgggct 363
|| |||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 133584132 tcatcaaccacctgatcaacatgcttctgcaggcctcctacacctacctc---------- 133584083
Query: 364 tctatttcaaccgcgacgatgtggctctggagggcgtgagtcannnnnnncgcgaattgg 423
|| ||||||||| |||| |||||||||||||||| ||||| || |||||||
Sbjct: 133584082 tcaatttcaacctcgacaatgtggctctggagggtgtgagccactttttctatgaattgg 133584023
Query: 424 ccgaggagaagcgcgagggttcggagcgtctcttgaaaatgcaaaaccagcgcggtggcc 483
||||||||||||| |||| | ||||| ||||||||||||||||||| || | |||||||
Sbjct: 133584022 tcgaggagaagcgcaagggcttggagcatctcttgaaaatgcaaaactagtgtggtggcc 133583963
Query: 484 gcgccctcttccaggacgtgcagaaaccatctcaagatgagtggggtaaaacccaggacg 543
| |||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 133583962 acaccctcttctaggacgtgcagaagccatctcaagatgagcagggtaaaacccaggacg 133583903
Query: 544 ctatggaagccgcccttcacttggagaagggactgaaccaggctcttgtggatctgcatg 603
|||||||||| ||| ||| |||||||||| |||||| |||| ||| ||| || ||
Sbjct: 133583902 ctatggaagctgccgttctcttggagaagaacctgaacgaggcccttccaaatccgcgtg 133583843
Query: 604 cgctgggttctgcccgcgcagacccccacctctgtgacttcctggagaaccacttcctgg 663
| || ||||||||| || |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 133583842 ccctcggttctgccagcacagacccccacctctgtgacttcctggagagccacttcctgg 133583783
Query: 664 atgaggaggtgaagctcatcaagaagatgggcgaccacctgaccaacctgcgcaggctct 723
|||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||| |
Sbjct: 133583782 atgaggaggtgaagctcatcaagaagatgggcgaccgcctgaccaacctctgcaagctgt 133583723
Query: 724 ctggtccccaggctgggctgggcgagtacctcttcgaaaggctcacactcaagcacgact 783
||||||||| ||||||||||||||||||||||| ||||||||||| |||||| | ||||
Sbjct: 133583722 ctggtccccgtgctgggctgggcgagtacctctttgaaaggctcaccctcaagaatgact 133583663
Query: 784 aggaatctctgggagccaggggccttggaggcgctcctctgggtgctgggctttctgcgg 843
|||| |||||| ||| |||||| |||| || ||||| | |||||| |||| |
Sbjct: 133583662 aggagcctctggagcccaatggcctttgaggagcccctctagtgcctgggc-ttctacca 133583604
Query: 844 aaagccctttctgcagccacgaagcaccattcttaacaccctggagccctctcccaagtc 903
|||||| ||||| |||| | |||| || | | ||||||||||||||||||||||||
Sbjct: 133583603 gaagccc-ctctgccaccacaaggcactgttttaaccaccctggagccctctcccaagtc 133583545
Query: 904 ttggaccaaatggaaacaataaa 926
|| ||||||||||||||||||||
Sbjct: 133583544 ttagaccaaatggaaacaataaa 133583522
Score = 145 bits (73), Expect = 5e-32
Identities = 216/264 (81%), Gaps = 6/264 (2%)
Strand = Plus / Minus
Query: 134 gcctccgactaccctccaaccttttttccagtcgcaaccttcggactccgcctctcagct 193
||||| |||| |||||||| |||||||||| | ||||| || || || ||| |||||||
Sbjct: 83751858 gcctctgacttccctccaagtttttttccagcctcaaccctcagaatcagccactcagct 83751799
Query: 194 atcttcagtctccgggaccagccaacaccattttttgagcttagctccttattgccgacc 253
|||||||| ||||||||| ||||||||| |||||||||| ||| ||||| || | || |
Sbjct: 83751798 atcttcagcctccgggactagccaacactattttttgagtttaactcctcataacagatc 83751739
Query: 254 agccatgagctcccaggttcgtcagaattattccaccgaggtggaggccttcgtcaaccg 313
| ||| ||| ||||| ||| |||||||||||| | |||||||||||||||| |||| ||
Sbjct: 83751738 aaccacgagtgcccagtttcatcagaattattctaacgaggtggaggccttcatcaagcg 83751679
Query: 314 cctgatcaacatgcatctgcaggcctcctacacctacctctctctgggcttctatttcaa 373
|||| ||| || ||| ||||||||| ||||||||||||||||| || |||||| |
Sbjct: 83751678 cctggtcagca------tgctggcctcctatacctacctctctctggggttttatttcca 83751625
Query: 374 ccgcgacgatgtggctctggaggg 397
| | || ||||| |||||||||||
Sbjct: 83751624 cagagaggatgttgctctggaggg 83751601
Score = 129 bits (65), Expect = 3e-27
Identities = 172/206 (83%), Gaps = 5/206 (2%)
Strand = Plus / Minus
Query: 487 ccctcttccaggacgtgcagaaaccatctcaagatgagtggggtaaaacccaggacgcta 546
|||||||||||||| ||||||| |||||| | |||||| ||||||||||||| |||
Sbjct: 83751530 ccctcttccaggacatgcagaagccatctgaggatgag----gtaaaacccaggatgctc 83751475
Query: 547 tggaagccgcccttcacttggagaagggactgaaccaggctcttgtggatctgcatgcgc 606
||||||| |||| | | ||||||| |||||||||||| | | ||||||| ||||| |
Sbjct: 83751474 cggaagccaccctgctcatggagaaaa-actgaaccaggcccatttggatctacatgccc 83751416
Query: 607 tgggttctgcccgcgcagacccccacctctgtgacttcctggagaaccacttcctggatg 666
|||||||| ||| ||||||| | ||||||||||||||||||||||| || ||||||||
Sbjct: 83751415 tgggttcttcccctgcagaccgctacctctgtgacttcctggagaacaaccgcctggatg 83751356
Query: 667 aggaggtgaagctcatcaagaagatg 692
|| ||||||| ||||||| |||||||
Sbjct: 83751355 agcaggtgaaactcatcaggaagatg 83751330
Score = 127 bits (64), Expect = 1e-26
Identities = 261/328 (79%), Gaps = 2/328 (0%)
Strand = Plus / Plus
Query: 314 cctgatcaacatgcatctgcaggcctcctacacctacctctctctgggcttctatttcaa 373
|||| |||| ||||||||||||||||||||||||||||||||||| ||||||| |||| |
Sbjct: 88484648 cctgttcaaaatgcatctgcaggcctcctacacctacctctctctaggcttctgtttcca 88484707
Query: 374 ccgcgacgatgtggctctg--gagggcgtgagtcannnnnnncgcgaattggccgaggag 431
||| || ||||| |||||| |||| | |||| || | ||||||||||| |||
Sbjct: 88484708 ccgtgaggatgtagctctggagaggccttgagccacctttcccatgaattggccgaagag 88484767
Query: 432 aagcgcgagggttcggagcgtctcttgaaaatgcaaaaccagcgcggtggccgcgccctc 491
|||| | ||| | ||||||| | |||||| | |||||| || ||||| |||||
Sbjct: 88484768 aagcacaaggaagcccagcgtctttcaaaaatgtgagaccagcatggccgccgcaccctc 88484827
Query: 492 ttccaggacgtgcagaaaccatctcaagatgagtggggtaaaacccaggacgctatggaa 551
| ||||||| ||||||||||| | |||||||||||| |||||||||| |||||| |||||
Sbjct: 88484828 tgccaggacctgcagaaaccagcccaagatgagtggagtaaaacccatgacgctctggaa 88484887
Query: 552 gccgcccttcacttggagaagggactgaaccaggctcttgtggatctgcatgcgctgggt 611
|||||||| | | ||| ||| || |||||||| ||| || |||||| || ||||||
Sbjct: 88484888 gccgccctgctcagggacaagaacctaaaccaggcactttggggtctgcacgccctgggt 88484947
Query: 612 tctgcccgcgcagacccccacctctgtg 639
||| |||||||| |||| ||| ||||||
Sbjct: 88484948 tctccccgcgcataccctcacttctgtg 88484975
Score = 125 bits (63), Expect = 5e-26
Identities = 126/147 (85%)
Strand = Plus / Plus
Query: 144 accctccaaccttttttccagtcgcaaccttcggactccgcctctcagctatcttcagtc 203
||||| |||||||||||||||| ||||||| ||| | ||| ||| | |||| | | |
Sbjct: 107145596 accctacaaccttttttccagttgcaacctatggaaccagccactctggtatccttggcc 107145655
Query: 204 tccgggaccagccaacaccattttttgagcttagctccttattgccgaccagccatgagc 263
||| ||||||||||| |||||||||||||||||||||||||||| || || ||||||||
Sbjct: 107145656 tcccggaccagccaatgccattttttgagcttagctccttattgctgatcaaccatgagc 107145715
Query: 264 tcccaggttcgtcagaattattccacc 290
|||||||||| ||||||||||||||||
Sbjct: 107145716 tcccaggttcatcagaattattccacc 107145742
Score = 89.7 bits (45), Expect = 3e-15
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 83 ttgcttcaacagtgtttggacggaacagacccagggacgccccttgctccagcctccgac 142
||||||||||||||||||||| ||||||||||||||| || |||| ||||||||| |||
Sbjct: 88484410 ttgcttcaacagtgtttggacagaacagacccagggatgcaccttcttccagcctcggac 88484469
Query: 143 taccctccaaccttttt 159
||||||||||| ||||
Sbjct: 88484470 caccctccaaccgtttt 88484486
Score = 61.9 bits (31), Expect = 6e-07
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 72 ggatctgtctcttgcttcaacagtgtttggacggaacagaccc 114
|||||||||||||| ||| |||||||||||| |||||||||||
Sbjct: 122653679 ggatctgtctcttgtttcgacagtgtttggatggaacagaccc 122653637
>Sscrofa_Chr06
|| Length = 157765593
Score = 617 bits (311), Expect = e-174
Identities = 311/311 (100%)
Strand = Plus / Minus
Query: 50 gcagtgtgctcggcggtcccccggatctgtctcttgcttcaacagtgtttggacggaaca 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50097500 gcagtgtgctcggcggtcccccggatctgtctcttgcttcaacagtgtttggacggaaca 50097441
Query: 110 gacccagggacgccccttgctccagcctccgactaccctccaaccttttttccagtcgca 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50097440 gacccagggacgccccttgctccagcctccgactaccctccaaccttttttccagtcgca 50097381
Query: 170 accttcggactccgcctctcagctatcttcagtctccgggaccagccaacaccatttttt 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50097380 accttcggactccgcctctcagctatcttcagtctccgggaccagccaacaccatttttt 50097321
Query: 230 gagcttagctccttattgccgaccagccatgagctcccaggttcgtcagaattattccac 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50097320 gagcttagctccttattgccgaccagccatgagctcccaggttcgtcagaattattccac 50097261
Query: 290 cgaggtggaggccttcgtcaaccgcctgatcaacatgcatctgcaggcctcctacaccta 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50097260 cgaggtggaggccttcgtcaaccgcctgatcaacatgcatctgcaggcctcctacaccta 50097201
Query: 350 cctctctctgg 360
|||||||||||
Sbjct: 50097200 cctctctctgg 50097190
Score = 498 bits (251), Expect = e-138
Identities = 737/891 (82%), Gaps = 14/891 (1%)
Strand = Plus / Plus
Query: 50 gcagtgtgctcggcggtcccccggatctgtctcttgcttcaacagtgtttggacggaaca 109
|||||| |||| || ||||| || |||||| ||||| | |||||||||||| ||||||
Sbjct: 6400420 gcagtgcgctcagcagtcccgtgggtctgtcccttgcattgacagtgtttggatggaaca 6400479
Query: 110 gacccagggacgccccttgctccagcctccgactaccctccaacctttttt-ccagtcgc 168
|||||| ||| |||||||||| ||| |||||||||||| || | |||||| ||||||||
Sbjct: 6400480 gacccaaggaggccccttgcttcagtgtccgactaccctacagcttttttttccagtcgc 6400539
Query: 169 aaccttcggactccgcctctcagctatcttcagtctccgggaccagccaacaccattttt 228
|||||||||| || ||| || ||||||||| |||||| |||||||||||||||||||||
Sbjct: 6400540 aaccttcggaatcagccacttagctatctttggtctccaggaccagccaacaccattttt 6400599
Query: 229 tgagcttagctccttattgccgaccagccatgagctcccaggttcgtcagaattattcca 288
||||||| |||| | || | || ||||||||| |||||||| ||||||||||| ||
Sbjct: 6400600 tgagctt-----cttactaccaatcaaccatgagcttccaggttcatcagaattatttca 6400654
Query: 289 ccgaggtggaggccttcgtcaaccgcctgatcaacatgcatctgcaggcctcctacacct 348
| ||||| |||||||||||||||| ||||| |||||||||||||||| |||||| ||||
Sbjct: 6400655 ctgaggtagaggccttcgtcaaccacctgaccaacatgcatctgcagaactcctatacct 6400714
Query: 349 acctctctctgggcttctatttcaaccgcgacgatgtggctctggagggcgtgagtcann 408
||||||||||||||| |||||||| | ||| |||||||||||||| | ||||| ||
Sbjct: 6400715 gcctctctctgggcttgcatttcaacagtgacaatgtggctctggagagtgtgagccact 6400774
Query: 409 nnnnncgcgaattggccgaggagaagcgcgagggttcggagcgtctcttgaaaatgcaaa 468
| | || |||| | ||||||| || ||| | |||| |||| | ||||||||||
Sbjct: 6400775 tcttcctcaaactggctggggagaagtgcaaggacgctgagcatctccttaaaatgcaaa 6400834
Query: 469 accagcgc-ggtggccgcgccctcttccaggacgtgcagaaaccatctcaagatgagtgg 527
||||| ||||| || |||||||||| || ||||| | |||||||||||||||||
Sbjct: 6400835 accagtaatggtggt-gcaccctcttccaagatgtgcaaga--catctcaagatgagtgg 6400891
Query: 528 ggtaaaacccaggacgctatggaagccgcccttcacttggagaagggactgaaccaggct 587
|||||||||||||| | ||||||||| ||| ||| |||||||||| ||||||||||
Sbjct: 6400892 ggtaaaacccaggatgatatggaagctgccattctcttggagaagaatctgaaccagggc 6400951
Query: 588 cttgtggatctgcatgcgctgggttctgcccgcgcagacccccacctctgtgacttcctg 647
||| ||||||||||||| ||| ||||||||| ||||||||||||||||||||||||| |
Sbjct: 6400952 cttctggatctgcatgccctgagttctgcccatgcagacccccacctctgtgacttccag 6401011
Query: 648 gagaaccacttcctggatgaggaggtgaagctcatcaagaagatgggcgaccacctgacc 707
||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 6401012 aagagccacttcctggatgaggaggtgacgctcatcaagaagatgggttaccacctgacc 6401071
Query: 708 aacctgcgcaggctctctggtccccaggctgggctgggcgagtacctcttcgaaaggctc 767
|| || | ||| || |||||||||||| |||||||||| ||||||||||| |||| ||||
Sbjct: 6401072 aaact-cccagcctgtctggtccccagcctgggctgggtgagtacctcttagaaaagctc 6401130
Query: 768 acactcaagcacgactaggaatctctgggagccaggggccttggaggcgctcctctgggt 827
|| |||||||| |||||| | |||||| |||| |||||| |||| || |||||||
Sbjct: 6401131 actctcaagcatgactagcagcctctggaccccagtggcctttgaggagcccctctggtg 6401190
Query: 828 gctgggctttctgcggaaagccctt-tctgcagccacgaagcaccattcttaacaccctg 886
|||||| |||||| |||||||| ||||||||||| | ||| || | | ||||||
Sbjct: 6401191 cctgggc-ttctgccagaagcccttctctgcagccacaagtcactgttttaaccacccta 6401249
Query: 887 gagccctctcccaagtcttggaccaaatggaaacaataaaagctttttgca 937
||||||| |||| ||||||||||||||||||| ||| |||||||||||||
Sbjct: 6401250 gagccctaccccaggtcttggaccaaatggaaaaaat-aaagctttttgca 6401299
Score = 494 bits (249), Expect = e-137
Identities = 297/309 (96%), Gaps = 3/309 (0%)
Strand = Plus / Minus
Query: 633 ctctgtgacttcctggagaaccacttcctggatgaggaggtgaagctcatcaagaagatg 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50096217 ctctgtgacttcctggagaaccacttcctggatgaggaggtgaagctcatcaagaagatg 50096158
Query: 693 ggcgaccacctgaccaacctgcgcaggctctctggtccccaggctgggctgggcgagtac 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50096157 ggcgaccacctgaccaacctgcgcaggctctctggtccccaggctgggctgggcgagtac 50096098
Query: 753 ctcttcgaaaggctcacactcaagcacgactaggaatctctgggagccaggggccttgga 812
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 50096097 ctcttcgaaaggctcacactcaagcacgactaggaatctctggagcccaggggccttgga 50096038
Query: 813 ggcgctcctctgggtgctgggctttctg-cggaaagccctttctgcagccacgaagcacc 871
||||||||||||| |||||| ||||| ||||| |||||||||||||||||| |||||
Sbjct: 50096037 ggcgctcctctggtgcctgggc-ttctgccggaagcccctttctgcagccacgaggcacc 50095979
Query: 872 attcttaa-caccctggagccctctcccaagtcttggaccaaatggaaacaataaaagct 930
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50095978 attcttaaccaccctggagccctctcccaagtcttggaccaaatggaaacaataaaagct 50095919
Query: 931 ttttgcagc 939
|||||||||
Sbjct: 50095918 ttttgcagc 50095910
Score = 297 bits (150), Expect = 6e-78
Identities = 509/627 (81%), Gaps = 13/627 (2%)
Strand = Plus / Plus
Query: 75 tctgtctcttgcttcaacagtgtttggacggaacagacccagggacgccccttgctccag 134
|||||||||||| |||||||||||||||| |||||||||||||||| |||||| ||
Sbjct: 24823805 tctgtctcttgcctcaacagtgtttggacagaacagacccagggacaccccttcctt--- 24823861
Query: 135 cctccgactaccctccaaccttttttccagtcgcaaccttcggactccgcctctcagcta 194
||| |||||||||| |||| | || ||||||||| || || || ||||| ||
Sbjct: 24823862 -----gaccaccctccaacattttaactagctgcaaccttcagaatcaaccactcagata 24823916
Query: 195 tcttcagtctccgggaccagccaacaccattttttgagcttagctccttattgccgacca 254
|| || | |||||||||||||||||||||||||| ||||||||||||||||| || ||||
Sbjct: 24823917 tcctcggcctccgggaccagccaacaccattttt-gagcttagctccttatttcccacca 24823975
Query: 255 gccatgagctcccaggttcgtcagaattattccaccgaggtggaggccttcgtcaaccgc 314
|||||||||||||| | |||| |||||||||| |||||| | || | |||||||
Sbjct: 24823976 accatgagctcccagtctagtcacaattattccatacaggtggggaccccc--caaccgc 24824033
Query: 315 ctgatcaacatgcatctgcaggcctcctacacctacctctctctgggcttctatttcaac 374
||| ||||||||||| ||| ||| | ||||||||||||||||||||||||| ||||| ||
Sbjct: 24824034 ctggtcaacatgcatttgctggctttctacacctacctctctctgggcttccatttccac 24824093
Query: 375 cgcgacgatgtggctctggagggcgtgagtcannnnnnncgcgaattggccgaggagaag 434
| |||||||||||||||| ||||| | | ||| ||||| ||||||||||
Sbjct: 24824094 catgacgatgtggctctggtcagcgtgggccgcttattccgcaaattgaccgaggagaat 24824153
Query: 435 cgcgagggttcggagcgtctcttgaaaatgcaaaaccagcgcggtggccgcgccctcttc 494
| | || | || |||||||||| ||| ||||||||| | || | |||| |||||||||
Sbjct: 24824154 cacaagagctcagagcgtctctcgaagatgcaaaactggtgcagcagccgtgccctcttc 24824213
Query: 495 caggacgtgcagaaaccatctcaagatgagtggggtaaaacccaggacgctatggaagcc 554
||||||| |||| ||||||| ||||| ||| |||||||||||||||| || ||||||||
Sbjct: 24824214 caggacgagcaggaaccatcccaagacgaggagggtaaaacccaggactctgtggaagcc 24824273
Query: 555 gcccttcacttggagaagggactgaaccaggctcttgtggatctgcatgcgctgggttct 614
||| | | |||||| |||||||| | || | |||| |||||||| |||| ||||
Sbjct: 24824274 gccacagtcctagagaagaacctgaaccaag-tcgtttggagctgcatgccctggcttct 24824332
Query: 615 gcccgcgcagaccccc-acctctgtgacttcctggagaaccacttcctggatgaggaggt 673
|||| | ||||||||| | |||||||||||||||||||||| |||||||| |||| ||||
Sbjct: 24824333 gcccacacagaccccccagctctgtgacttcctggagaaccgcttcctgggtgagcaggt 24824392
Query: 674 gaagctcatcaagaagatgggcgacca 700
||| |||||||||||||||||||||||
Sbjct: 24824393 gaaactcatcaagaagatgggcgacca 24824419
Score = 254 bits (128), Expect = 8e-65
Identities = 128/128 (100%)
Strand = Plus / Minus
Query: 505 agaaaccatctcaagatgagtggggtaaaacccaggacgctatggaagccgcccttcact 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50096525 agaaaccatctcaagatgagtggggtaaaacccaggacgctatggaagccgcccttcact 50096466
Query: 565 tggagaagggactgaaccaggctcttgtggatctgcatgcgctgggttctgcccgcgcag 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50096465 tggagaagggactgaaccaggctcttgtggatctgcatgcgctgggttctgcccgcgcag 50096406
Query: 625 acccccac 632
||||||||
Sbjct: 50096405 acccccac 50096398
Score = 252 bits (127), Expect = 3e-64
Identities = 141/148 (95%)
Strand = Plus / Minus
Query: 359 gggcttctatttcaaccgcgacgatgtggctctggagggcgtgagtcannnnnnncgcga 418
|||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 50097025 gggcttctatttcaaccgcgacgatgtggctctggagggcgtgagtcatttttttcgcga 50096966
Query: 419 attggccgaggagaagcgcgagggttcggagcgtctcttgaaaatgcaaaaccagcgcgg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50096965 attggccgaggagaagcgcgagggttcggagcgtctcttgaaaatgcaaaaccagcgcgg 50096906
Query: 479 tggccgcgccctcttccaggacgtgcag 506
||||||||||||||||||||||||||||
Sbjct: 50096905 tggccgcgccctcttccaggacgtgcag 50096878
Score = 97.6 bits (49), Expect = 1e-17
Identities = 220/273 (80%), Gaps = 3/273 (1%)
Strand = Plus / Plus
Query: 94 gtgtttggacggaacagacccagggacgccccttgctccagcctccgactaccctccaac 153
|||| |||||||||||||||||||||||||| | |||||||||||||| ||||||||
Sbjct: 53936843 gtgtctggacggaacagacccagggacgccc-tccctccagcctccgacctccctccaag 53936901
Query: 154 cttttttccagtcgcaaccttcggactccgcctctcagctatcttcagtctccgggacca 213
| ||| |||||| ||||||| | || || ||| ||||| || | |||| ||||||
Sbjct: 53936902 catttc-ccagtcccaaccttggaacaaa-ccgctcccctatcctctgcctccaggacca 53936959
Query: 214 gccaacaccattttttgagcttagctccttattgccgaccagccatgagctcccaggttc 273
||| ||||||| || ||||||| |||| |||||| |||| ||| |||| ||||| | |
Sbjct: 53936960 gcccacaccatcttctgagcttcactccgtattgctgacccaccaggagcgcccagatgc 53937019
Query: 274 gtcagaattattccaccgaggtggaggccttcgtcaaccgcctgatcaacatgcatctgc 333
|||||||| |||||||||||||||||||| | | |||||||| |||||| ||||||||
Sbjct: 53937020 gtcagaatcattccaccgaggtggaggccaccattgaccgcctggtcaacaggcatctgc 53937079
Query: 334 aggcctcctacacctacctctctctgggcttct 366
| || ||||||||||||| |||| |||||
Sbjct: 53937080 ccacatctcacacctacctctcgctggccttct 53937112
Score = 93.7 bits (47), Expect = 2e-16
Identities = 211/263 (80%), Gaps = 2/263 (0%)
Strand = Plus / Minus
Query: 488 cctcttccaggacgtgcagaaaccatctcaagatgagtggggtaaaacccaggacgctat 547
||||||||||||| ||||||||| ||||||||||||||| ||||||| |||| ||||
Sbjct: 39913248 cctcttccaggacatgcagaaactgcctcaagatgagtggg-taaaacctaggatgcta- 39913191
Query: 548 ggaagccgcccttcacttggagaagggactgaaccaggctcttgtggatctgcatgcgct 607
|||||| || | | |||||||| ||||||||||||| ||||| ||| || ||
Sbjct: 39913190 ggaagctgctgagctcatggagaagaacctgaaccaggctcagtaggatccgcaggccct 39913131
Query: 608 gggttctgcccgcgcagacccccacctctgtgacttcctggagaaccacttcctggatga 667
||||||| || |||||| ||| || | |||||||||| ||| || |||||||| |||
Sbjct: 39913130 gggttctcgccatgcagactcccgccaccttgacttcctgaagagccgcttcctgggtga 39913071
Query: 668 ggaggtgaagctcatcaagaagatgggcgaccacctgaccaacctgcgcaggctctctgg 727
| ||||||| |||||| ||||||||||||| || |||||| ||| |||||||| | |
Sbjct: 39913070 gcaggtgaaactcatccagaagatgggcgatcatgtgaccaccctccgcaggctggcccg 39913011
Query: 728 tccccaggctgggctgggcgagt 750
||||||||||||||||| ||||
Sbjct: 39913010 cccccaggctgggctgggtgagt 39912988
Score = 93.7 bits (47), Expect = 2e-16
Identities = 128/155 (82%)
Strand = Plus / Minus
Query: 201 gtctccgggaccagccaacaccattttttgagcttagctccttattgccgaccagccatg 260
||||| |||||||||||| | |||||||||||| |||||||| | ||||||| | ||
Sbjct: 50478641 gtctctgggaccagccaaagctattttttgagctgagctccttctgaccgaccaacggtg 50478582
Query: 261 agctcccaggttcgtcagaattattccaccgaggtggaggccttcgtcaaccgcctgatc 320
||||||||||||| ||||||| ||| |||| || |||||||| | |||| ||| | ||
Sbjct: 50478581 agctcccaggttcatcagaatgatttcacccagatggaggccgccagcaactgcccggtc 50478522
Query: 321 aacatgcatctgcaggcctcctacacctacctctc 355
|| ||||||||| ||||||||||||||||||||
Sbjct: 50478521 aatgtgcatctgcccgcctcctacacctacctctc 50478487
Score = 89.7 bits (45), Expect = 3e-15
Identities = 219/273 (80%), Gaps = 3/273 (1%)
Strand = Plus / Plus
Query: 94 gtgtttggacggaacagacccagggacgccccttgctccagcctccgactaccctccaac 153
|||| |||||||||||||||||||||||||| | |||||||||| ||| ||||||||
Sbjct: 53613723 gtgtctggacggaacagacccagggacgccc-tccctccagcctctgacctccctccaag 53613781
Query: 154 cttttttccagtcgcaaccttcggactccgcctctcagctatcttcagtctccgggacca 213
| ||| |||||| ||||||| | || || ||| ||||| || | |||| ||||||
Sbjct: 53613782 catttc-ccagtcccaaccttggaacaaa-ccgctcccctatcctctgcctccaggacca 53613839
Query: 214 gccaacaccattttttgagcttagctccttattgccgaccagccatgagctcccaggttc 273
||| ||||||| || ||||||| |||| |||||| |||| ||| |||| ||||| | |
Sbjct: 53613840 gcccacaccatcttctgagcttcactccgtattgctgacccaccaggagcgcccagatgc 53613899
Query: 274 gtcagaattattccaccgaggtggaggccttcgtcaaccgcctgatcaacatgcatctgc 333
|||||||| |||||||||||||||||||| | | |||||||| |||||| ||||||||
Sbjct: 53613900 gtcagaatcattccaccgaggtggaggccaccattgaccgcctggtcaacaggcatctgc 53613959
Query: 334 aggcctcctacacctacctctctctgggcttct 366
| || ||||||||||||| |||| |||||
Sbjct: 53613960 ccacatctcacacctacctctcgctggccttct 53613992
>Sscrofa_Chr07
|| Length = 134764511
Score = 541 bits (273), Expect = e-151
Identities = 733/879 (83%), Gaps = 11/879 (1%)
Strand = Plus / Plus
Query: 65 gtcccccggatctgtctcttgcttcaacagtgtttggacggaacagacccagggacgccc 124
|||||| ||||||||| || ||||||||||||||||||| ||| |||||||||| | |
Sbjct: 31265579 gtccccaggatctgtccct-gcttcaacagtgtttggacagaaaagacccaggggtgact 31265637
Query: 125 cttgctccagcctccgactaccctccaaccttttttc---cagtcgcaaccttcggactc 181
||||||||||| |||||||||||||||||||||||| |||| |||||| ||||| ||
Sbjct: 31265638 cttgctccagcttccgactaccctccaacctttttttttgcagttgcaaccctcggaatc 31265697
Query: 182 cgcctctcagctatcttcagtctccgggaccagccaacaccattttttgagcttagctcc 241
||| ||||||||||| ||||| | ||||||||||||| | ||||||| |||| ||||
Sbjct: 31265698 agccactcagctatctctggtctctgagaccagccaacactactttttgaacttaactcc 31265757
Query: 242 ttattgccgaccagccatgagctcccaggttcgtcagaattattccaccgaggtggaggc 301
||||| || || |||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 31265758 ttattagggatcaaccatgagctcccaggttcgtcagaattattccacggaattggaggc 31265817
Query: 302 cttcgtcaaccgcctgatcaacatgcatctgcaggcctcctacacctacctctctctggg 361
|||| ||||| |||||||| | |||||||| ||||||| ||||||||||||| ||| |
Sbjct: 31265818 cttcctcaactgcctgatcga--tgcatctgagggcctcccacacctacctctccctgcg 31265875
Query: 362 cttctatttcaaccgcgacgatgtggctctggagggcgtgagtcannnnnnncgcgaatt 421
||||||||||| || | ||||||||||||||| ||||||| || || ||||
Sbjct: 31265876 tctctatttcaacagcaatgatgtggctctggagagcgtgagccactttttctgcaaatt 31265935
Query: 422 ggccgaggagaagcgcgagggttcggagcgtctcttgaaaatgcaaaaccagcgcggtgg 481
||| |||||||||| ||||| | |||||||||||||||||| ||||| ||||| ||||
Sbjct: 31265936 ggctgaggagaagctggagggcgcagagcgtctcttgaaaatgtaaaactagcgcagtgg 31265995
Query: 482 ccgcgccctcttccaggacgtgcagaaaccatctcaagatgagtggggtaaaacccagga 541
|||||||||||||| || || |||| ||||||||||| |||| |||||||||| ||||
Sbjct: 31265996 tagcgccctcttccagaacatg-agaagccatctcaagaagagtcgggtaaaacc-agga 31266053
Query: 542 cgctatggaagccgcccttcacttggagaagggactgaaccaggctcttgtggatctgca 601
|||||||||||| ||| ||| |||||||||| ||||||||||||||| | |||| |||
Sbjct: 31266054 cgctatggaagctgccattctcttggagaagaacctgaaccaggctcttctagatccgca 31266113
Query: 602 tgcgctgggttctgcccgcgcagacccccacctctgtgacttcctggagaaccacttcct 661
||| |||||||||||||| || ||||| || ||||||||||||||||||| || ||| |
Sbjct: 31266114 tgccctgggttctgcccgtgcggacccgcatctctgtgacttcctggagagccgattctt 31266173
Query: 662 ggatgaggaggtgaagctcatcaagaagatgggcgaccacctgaccaacctgcgcaggct 721
||||||| ||||||||| |||||||| |||||| ||||||||| || |||| || | ||
Sbjct: 31266174 ggatgagcaggtgaagcccatcaagacgatgggagaccacctgtccgacctccgtggact 31266233
Query: 722 ctctggtccccaggctgggctgggcgagtacctcttcgaaaggctcacactcaagcacga 781
|||||||||||| |||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 31266234 gtctggtccccagactgggctgggcgagtacctctttgaaagtctcaccctcaagcacag 31266293
Query: 782 ctaggaatctctgggagccaggggccttggaggcgctcctctgggtgctgggctttctg- 840
|||||| |||||| |||| |||||| |||| | |||| || |||||| |||||
Sbjct: 31266294 ctaggagcctctggagcccagtggcctttgaggaggccctccggtgcctgggc-ttctgc 31266352
Query: 841 cggaaagccctttctgcagccacgaagcaccattcttaacaccctggagccctctcccaa 900
| ||| ||| |||||||||| | |||| || | | |||||||||||||||||||||
Sbjct: 31266353 cagaacccccgccctgcagccacaaggcacttttttaaccaccctggagccctctcccaa 31266412
Query: 901 gtcttggaccaaatggaaacaataaaagctttttgcagc 939
||||||||||||||||||||||| |||||||| ||||||
Sbjct: 31266413 gtcttggaccaaatggaaacaat-aaagctttatgcagc 31266450
>Sscrofa_Chr10
|| Length = 79102373
Score = 531 bits (268), Expect = e-148
Identities = 743/894 (83%), Gaps = 21/894 (2%)
Strand = Plus / Plus
Query: 50 gcagtgtgctcggcggtcccccggatctgtctcttgcttcaaca-gtgtttggacggaac 108
||||||||||| || || || | | |||| ||||||||||||| ||||||||| |||||
Sbjct: 47224005 gcagtgtgctcagcagttccgctggtctgactcttgcttcaacttgtgtttggatggaac 47224064
Query: 109 agacccagggacgccccttgctccagcctccgactaccctccaaccttttttccagtcgc 168
||||||||||| |||||| |||||||||||| ||||||||||| |||||||||||| ||
Sbjct: 47224065 agacccagggatgcccctggctccagcctccaactaccctccagccttttttccagctgc 47224124
Query: 169 aaccttcggactccgcctctcagctatcttcagtctccgggaccagccaacaccattttt 228
|||||| ||| | || |||||||||| || ||||||||||||| ||||| || |||||
Sbjct: 47224125 aacctttggaattaaccactcagctatcctcggtctccgggaccaaccaactcccttttt 47224184
Query: 229 tgagcttagctccttattgccgaccagccatgagctcccaggttcgtcagaattattcca 288
|||||||||||||||||| | | || |||||||||||||| ||| | |||||||||||
Sbjct: 47224185 tgagcttagctccttattatctatcaaccatgagctcccagattcattagaattattccc 47224244
Query: 289 cc-gaggtggaggccttcgtcaaccgcctgatcaacatgcatctgcaggcctcctacacc 347
|| ||||||||||| ||||||| |||||||||||||||||||| ||||||| | |
Sbjct: 47224245 cctgaggtggaggctggcgtcaactgcctgatcaacatgcatctgtgggcctcccatatt 47224304
Query: 348 tacctctctctgggcttctatttcaaccgcgacgatgtggctctggagggcgtgagtcan 407
|||||||||||||||||||||||| || | || || |||||||||| ||
Sbjct: 47224305 tacctctctctgggcttctatttcgactgtga-----------tgaagggcgtgagccac 47224353
Query: 408 nnnnnncgcgaattggccgaggagaagcgcgagggttcggagcgtctcttgaaaatgcaa 467
| ||||| ||| ||| ||||| |||||| |||||||| |||||||||||||
Sbjct: 47224354 tcttgcagtgaatttgcccaggggaagctcgagggcaaggagcgtc-cttgaaaatgcaa 47224412
Query: 468 aaccagcgcggtggccgcgccctcttccaggacgtgcagaaaccatctcaagatgagtgg 527
|||||| || ||||| | |||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 47224413 aaccagagcagtggctgtgccctcttccaggatgtgcagaagccatctcaagatgagtgg 47224472
Query: 528 ggtaaaacccaggacgctatggaagccgcccttcacttggagaagggactgaaccaggct 587
|||||||||||||| |||||||||| ||| ||| ||||||||| |||||||||||
Sbjct: 47224473 agtaaaacccaggacactatggaagctgccattctcttggagaattacctgaaccaggcc 47224532
Query: 588 cttgtggatctgcatgcgctgggttctgcccgcgcagacccccacctctgtgacttcctg 647
||| |||||| ||| | || | |||||| | ||||||||||| |||||||||||||||
Sbjct: 47224533 cttctggatccgcacaccct-gcatctgcctgtgcagacccccatctctgtgacttcctg 47224591
Query: 648 gagaaccacttcctggatgaggaggtgaagctcatcaagaagatgggcgaccacctgacc 707
|||| |||||||||||||||||||| || |||| |||||||||||| ||||||||||||
Sbjct: 47224592 gagagccacttcctggatgaggaggggaggctccccaagaagatgggtgaccacctgacc 47224651
Query: 708 aacctgcgcaggctctctggtccccaggctgggctgggcgagtacctcttcgaaaggctc 767
|||| |||||||| | |||||||||| |||||||||||||| |||||| |||||||||
Sbjct: 47224652 cacctccgcaggctgttgggtccccagggtgggctgggcgagtgcctctttgaaaggctc 47224711
Query: 768 acactcaagcacgactaggaatctctgggagccaggggccttggaggcgctcctctgggt 827
| ||| |||||||| ||| |||||| | |||| |||||| |||| || |||||||
Sbjct: 47224712 cccttcacgcacgactgggagcctctggaacccagtggcctttgaggagcccctctggtg 47224771
Query: 828 gctgggctttctgcggaaag-ccctttctgcagccacgaagcaccattcttaa-caccct 885
||||||||| ||| |||| |||| ||||||||||| || || || |||| ||||||
Sbjct: 47224772 cctgggcttt-tgccaaaagcccctctctgcagccac--agttccctttttaatcaccct 47224828
Query: 886 ggagccctctcccaagtcttggaccaaatggaaacaataaaagctttttgcagc 939
||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 47224829 ggagccctctcccaagtcttggaccaagtggaaacaat-aaagctttttgcagc 47224881
Score = 91.7 bits (46), Expect = 7e-16
Identities = 112/133 (84%), Gaps = 2/133 (1%)
Strand = Plus / Minus
Query: 576 ctgaaccaggctcttgtggatctgcatgcgctgggttctgcccgcgcagacccccac--c 633
||||||||||| ||| |||||||| |||| |||||||||||| || |||||||| | |
Sbjct: 33496871 ctgaaccaggcccttttggatctgaatgccctgggttctgccggcagagacccccccatc 33496812
Query: 634 tctgtgacttcctggagaaccacttcctggatgaggaggtgaagctcatcaagaagatgg 693
|||||||||||||||| | || | | || |||||| |||||| |||||||||||||| |
Sbjct: 33496811 tctgtgacttcctggacagcctcctgctagatgagccggtgaaactcatcaagaagatag 33496752
Query: 694 gcgaccacctgac 706
|||||||| ||||
Sbjct: 33496751 gcgaccacgtgac 33496739
Score = 60.0 bits (30), Expect = 2e-06
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 242 ttattgccgaccagccatgagctcccaggttcgtcagaattattccaccgaggtggaggc 301
|||||||| |||| |||||||||||||| ||| |||||| ||||||| |||||||| ||
Sbjct: 33497205 ttattgccaaccaaccatgagctcccagattcatcagaactattccatggaggtggaagc 33497146
Query: 302 ct 303
||
Sbjct: 33497145 ct 33497144
>Sscrofa_Chr14
|| Length = 153851969
Score = 515 bits (260), Expect = e-143
Identities = 607/720 (84%), Gaps = 15/720 (2%)
Strand = Plus / Plus
Query: 76 ctgtctcttgcttcaacagtgtttggacggaacagacccaggg-------acgccccttg 128
||||||||||||||| ||||||| ||| ||| ||||||| ||| || |||||
Sbjct: 816455 ctgtctcttgcttcagcagtgttaggatggagcagaccccggggacggggacacccctct 816514
Query: 129 ctccagcctccgactaccctccaaccttttttccagtcgcaaccttcggactccgcctct 188
||||||||||| |||||||||||| |||||||||||| |||||||| ||| || | | ||
Sbjct: 816515 ctccagcctcctactaccctccaaacttttttccagttgcaacctttggaatcagtcact 816574
Query: 189 cagctatcttcagtctccgggaccagccaacaccattttttgagcttagctccttattgc 248
|||||||| | || ||| ||||| |||||||||| ||||||||||| | ||||||| |
Sbjct: 816575 cagctatccttggtttccaggacctgccaacaccagtttttgagcttcacaccttattac 816634
Query: 249 cgaccagccatgagctcccaggttcgtcagaattattccaccgaggtggaggcctt-cgt 307
| | || |||||| ||||||| || ||||||||||||||| |||||||||| | |
Sbjct: 816635 caatcaaccatgaactcccagatttgtcagaattattccaa----gtggaggcctggcat 816690
Query: 308 caaccgcctgatcaacatgcatctgcaggcctcctacacctacctctctctgggcttcta 367
|||| |||||||| ||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 816691 caactgcctgatccacatgcatctgtggggctcctacacctacctctctctgggcttcta 816750
Query: 368 tttcaaccgcgacgatgtggctctggagggcgtgagtcannnnnnncgcgaattggccga 427
||||| | | ||| ||||||||||||||| || || || | ||||||||| |
Sbjct: 816751 tttcaccag-gacagtgtggctctggaggg-gtaagccactttccccaagaattggccaa 816808
Query: 428 ggagaagcgcgagggttcggagcgtctcttgaaaatgcaaaaccagcgcggtggccgcgc 487
|||||||| ||||||| | | |||||||||||||||||||||||| |||| | || |
Sbjct: 816809 ggagaagcacgagggtatagcgtgtctcttgaaaatgcaaaaccagcatggtgactgcac 816868
Query: 488 cctcttccaggacgtgcagaaaccatctcaagatgagtggggtaaaacccaggacgctat 547
|||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 816869 cctcttccaggatgtgcagaagccatctcaagatgagtggggtaaaacccaggatgctat 816928
Query: 548 ggaagccgcccttcacttggagaagggactgaaccaggctcttgtggatctgcatgcgct 607
|||||| ||| ||| ||||||| || ||||||||||| ||| ||||||||||||| |
Sbjct: 816929 ggaagctgccattctcttggaggagaacctgaaccaggcccttctggatctgcatgcctt 816988
Query: 608 gggttctgcccgcgcagacccccacctctgtgacttcctggagaaccacttcctggatga 667
|||||||||| || |||||||||| |||||||||||||||| | ||||||| |||||||
Sbjct: 816989 aggttctgccctcgaagacccccac-tctgtgacttcctggaaagccacttcttggatga 817047
Query: 668 ggaggtgaagctcatcaagaagatgggcgaccacctgaccaacctgcgcaggctctctgg 727
| ||| |||||||||||||||||||||| |||||||||||||||| | |||||| |||||
Sbjct: 817048 gaaggcgaagctcatcaagaagatgggcaaccacctgaccaacctccacaggctgtctgg 817107
Query: 728 tccccaggctgggctgggcgagtacctcttcgaaaggctcacactcaagcacgactagga 787
||||||||||||| ||||| |||||||||| ||||||||||| |||||||||||||||||
Sbjct: 817108 tccccaggctgggttgggcaagtacctctttgaaaggctcaccctcaagcacgactagga 817167
Score = 490 bits (247), Expect = e-136
Identities = 717/868 (82%), Gaps = 31/868 (3%)
Strand = Plus / Plus
Query: 73 gatctgtctcttgcttcaacagtgtttggacggaacagacccagggacgccccttgctcc 132
|||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||
Sbjct: 58097195 gatctgtctcttgcttcaacagtgtttggagagaacagagccagggatgccccttgctt- 58097253
Query: 133 agcctccgactaccctccaaccttttttccagtcgcaaccttcggactccgcctctcagc 192
||||||| |||||||| |||||||||| ||||||||| || || | | ||||||
Sbjct: 58097254 agcctccaactaccct-------tttttccagttgcaaccttcagaatcagtcactcagc 58097306
Query: 193 tatcttcagtctccgggaccagccaacaccattttttgagcttagctccttattgccgac 252
|||| |||||| ||||| |||||||||||| ||||||||||||| ||||||||| | |
Sbjct: 58097307 tatcctcagtccccggggccagccaacaccgttttttgagcttaactccttattactaat 58097366
Query: 253 cagccatgagctcccaggttcgtcagaattattccaccgaggtggaggccttcgtcaacc 312
|| ||||||||||||| | | |||||||||||||||| ||||||||||| |||||| ||
Sbjct: 58097367 caatcatgagctcccagatccatcagaattattccacctaggtggaggccatcgtcagcc 58097426
Query: 313 gcctgatcaacatgcatctgcaggcctcctacacctacctctctctgggcttctatttca 372
||| |||||||||||||| | |||||| ||||||| ||| ||||||||||||||||||
Sbjct: 58097427 accttatcaacatgcatcttcgggcctc-tacacctgtctccctctgggcttctatttca 58097485
Query: 373 accgcgacgatgtggctctggagggcgtgagtcannnnnnncgcgaattggccgaggaga 432
|| ||||| ||||||||||||||||| |||| || | |||||||| ||||||
Sbjct: 58097486 acagcgacaatgtggctctggagggcatgagccactttttccaaaaattggccaaggaga 58097545
Query: 433 agcgcgagggttcggagcgtctcttgaaaatgcaaaaccagcgcggtggccgcg------ 486
| | | ||| |||| ||||||| ||||||||||||||||| | |||||||
Sbjct: 58097546 accacaggggcatggagtgtctcttaaaaatgcaaaaccagcgtgatggccgcatggtgg 58097605
Query: 487 -----ccctcttccaggacgtgcagaaaccatctcaagatgagtggggtaaaacccagga 541
||||||||||||| |||||||| |||||||||||||| |||||||||||| ||||
Sbjct: 58097606 ctgcaccctcttccaggatgtgcagaagccatctcaagatgaatggggtaaaacctagga 58097665
Query: 542 cgctatggaagccgcccttcacttggagaagggactgaaccaggctcttgtggatctgca 601
||||||||||| ||| ||| |||||||||| ||||||||||| | |||||||| |
Sbjct: 58097666 tgctatggaagctgccattctcttggagaagaacctgaaccaggccttcctggatctgta 58097725
Query: 602 tgcgctgggttctgcccgcgcagacccccacctctgtgacttcctggagaaccacttcct 661
||| |||||||| | || || |||||||||||||||||||||||| ||| ||||||||
Sbjct: 58097726 tgccctgggttcggtccctgcggacccccacctctgtgacttcctgaagagtcacttcct 58097785
Query: 662 ggatgaggaggtgaagctcatcaagaagatgggcgaccacctgaccaacctgcgcaggct 721
||||||||||||||||||||||||||||| || ||||||||||||||| | ||| |||
Sbjct: 58097786 ggatgaggaggtgaagctcatcaagaagagaggtgaccacctgaccaacttttgcaagct 58097845
Query: 722 ctctggtccccaggctgggctgggcgagtacctcttcgaaaggctcacactcaagcacga 781
|||||| |||||||||||||||| |||||||||||| ||| ||||||||||||| |
Sbjct: 58097846 gtctggttcccaggctgggctgggtgagtacctcttcaaaa----cacactcaagcacca 58097901
Query: 782 ctaggaatctctgggagccaggggccttggaggcgctcctctgggtgctgggctttctg- 840
|||||| |||||| |||||||||| |||| || ||||| ||||| ||| |||||
Sbjct: 58097902 ctaggagcctctggagcccaggggcctctgaggagcccctct-ggtgcctggc-ttctgc 58097959
Query: 841 cggaaagccctttctgcagccacgaagcaccattcttaa--caccctggagccctctccc 898
| ||| |||||||||||||||| | ||||| || |||| || ||| ||||| ||||||
Sbjct: 58097960 cagaagcccctttctgcagccacaaggcacc-tttttaacccatcctagagccttctccc 58098018
Query: 899 aagtcttggaccaaatggaaacaataaa 926
||||||||| ||||||||||||||||||
Sbjct: 58098019 aagtcttgg-ccaaatggaaacaataaa 58098045
Score = 58.0 bits (29), Expect = 9e-06
Identities = 45/49 (91%), Gaps = 1/49 (2%)
Strand = Plus / Plus
Query: 891 cctctcccaagtcttggaccaaatggaaacaataaaagctttttgcagc 939
|||||||||||||||||| ||||||||| ||||||| |||||||||||
Sbjct: 817259 cctctcccaagtcttggatgaaatggaaataataaaa-ctttttgcagc 817306
>Sscrofa_Chr09
|| Length = 153670197
Score = 460 bits (232), Expect = e-127
Identities = 602/721 (83%), Gaps = 15/721 (2%)
Strand = Plus / Plus
Query: 73 gatctgtctcttgcttcaacagtgtttggacggaacagacccagggacgc----cccttg 128
|||||||||||||||||||||||||||||| ||||||||||||||||| | |||
Sbjct: 121475610 gatctgtctcttgcttcaacagtgtttggatggaacagacccagggaccctcccccccga 121475669
Query: 129 ctccagcctccgactaccctccaaccttttttccagtcgcaaccttcggactccgcctct 188
||||||| || ||||||||||||| |||||||||||| |||||||| ||| || ||| ||
Sbjct: 121475670 ctccagcttctgactaccctccaatcttttttccagttgcaaccttgggaatcagccact 121475729
Query: 189 cagctatcttcagtctccgggaccagccaacaccattttttga-gcttagctccttattg 247
||||| |||| || |||| ||| |||||||||||| | ||||| || |||||
Sbjct: 121475730 cagctg-cttc----tctgggatgagcacacaccatttttttaagcttaactttttatta 121475784
Query: 248 ccgaccagccatgagctcccaggttcgtcagaattattccaccgaggtggaggccttcgt 307
| || || |||||||||||||||||| |||||||||||||| ||||||||| ||||||||
Sbjct: 121475785 ctgatcaaccatgagctcccaggttcatcagaattattccagcgaggtggaagccttcgt 121475844
Query: 308 caaccgcctgatcaacatgcatctgcaggcctcctacacctacctctctctgggcttcta 367
| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 121475845 cgaccgcctga---acatgcatctgcaggcctcctacaccttcctctctctgggcttcta 121475901
Query: 368 tttcaaccgcgacgatgtggctctgg-agggcgtgagtcannnnnnncgcgaattggccg 426
|||||||| ||| | |||| ||| || | |||| || || ||||||||
Sbjct: 121475902 tttcaaccatgacaacaaggctatgggagagtgtgaaccactttttctgcaaattggcca 121475961
Query: 427 aggagaagcgcgagggttcggagcgtctcttgaaaatgcaaaaccagcgcggtggccgcg 486
|| |||||||| |||| |||| |||||||||||||||||||||||| | |||||| |
Sbjct: 121475962 agaagaagcgcaagggcgtggagggtctcttgaaaatgcaaaaccagctctgtggcctca 121476021
Query: 487 ccctcttccaggacgtgcagaaaccatctcaagatgagtggggtaaaacccaggacgcta 546
| |||||||||||| ||||||| |||| | ||||||||||||||||||||||||| | ||
Sbjct: 121476022 ctctcttccaggacttgcagaagccatattaagatgagtggggtaaaacccaggatggta 121476081
Query: 547 tggaagccgcccttcacttggagaagggactgaaccaggctcttgtggatctgcatgcgc 606
| ||||| ||| ||| |||||||||| || |||||||| ||| ||||||||||||| |
Sbjct: 121476082 tagaagctgccattctcttggagaagaacctaaaccaggcccttctggatctgcatgccc 121476141
Query: 607 tgggttctgcccgcgcagacccccacctctgtgacttcctggagaaccacttcctggatg 666
|||||| |||| || || ||||||||||||||||||||||||| |||||||||||||
Sbjct: 121476142 tgggttttgcctacgaagggtcccacctctgtgacttcctggagaa-cacttcctggatg 121476200
Query: 667 aggaggtgaagctcatcaagaagatgggcgaccacctgaccaacctgcgcaggctctctg 726
||||||||||| || ||||||||||||| ||||| ||| ||| ||| ||| |||| ||||
Sbjct: 121476201 aggaggtgaagttcgtcaagaagatgggtgaccatctgcccagcctccgctggctgtctg 121476260
Query: 727 gtccccaggctgggctgggcgagtacctcttcgaaaggctcacactcaagcacgactagg 786
|||||||||||||||| ||| ||||| ||||||||| ||||| |||||||||||||||
Sbjct: 121476261 gtccccaggctgggctaggcaagtacatcttcgaaaacctcaccttcaagcacgactagg 121476320
Query: 787 a 787
|
Sbjct: 121476321 a 121476321
Score = 161 bits (81), Expect = 9e-37
Identities = 264/324 (81%), Gaps = 7/324 (2%)
Strand = Plus / Plus
Query: 49 ggcagtgtgctcggcggtcccccggatctgtctcttgcttcaacagtgtttggacggaac 108
|||||||||||| | ||| || | |||||| ||||||||||||||||||||||| ||||
Sbjct: 18794091 ggcagtgtgctcagtggttcctcagatctgcctcttgcttcaacagtgtttggatcgaac 18794150
Query: 109 agacccagggacgccccttgctccagcctccgactaccctccaacc--ttttttccagtc 166
||||||||||||||| |||| |||||||||| || ||||||| | | |||||||||||
Sbjct: 18794151 agacccagggacgccacttgttccagcctcccaccaccctcccaacatttttttccagt- 18794209
Query: 167 gcaaccttcggactccgcctctcagctatcttcagtctccgggaccagccaacaccattt 226
||||| | | ||| |||||||| | || | |||| |||||||||||||||||||
Sbjct: 18794210 ----ccttctaagttagccactcagctaccctctgcctccaggaccagccaacaccattt 18794265
Query: 227 tttgagcttagctccttattgccgaccagccatgagctcccaggttcgtcagaattattc 286
||||||||| || |||||| || | ||||||||||||||||| || | |||||||| ||
Sbjct: 18794266 gttgagcttaacttcttattaccaatcagccatgagctcccagatttgccagaattagtc 18794325
Query: 287 caccgaggtggaggccttcgtcaaccgcctgatcaacatgcatctgcaggcctcctacac 346
|||| || ||| || | |||| | |||| |||||||||| | | |||| ||| ||
Sbjct: 18794326 caccaagtcggaagctattgtcagctacctggtcaacatgcagcaaccggccccctttac 18794385
Query: 347 ctacctctctctgggcttctattt 370
||||||||||||||||||||||||
Sbjct: 18794386 ctacctctctctgggcttctattt 18794409
Score = 105 bits (53), Expect = 4e-20
Identities = 146/177 (82%)
Strand = Plus / Plus
Query: 533 aacccaggacgctatggaagccgcccttcacttggagaagggactgaaccaggctcttgt 592
||||||||||||| |||||||| || ||| | |||||||| | ||||||||| | | |
Sbjct: 18794556 aacccaggacgctctggaagccaccattctcatggagaagaaccggaaccaggccccttt 18794615
Query: 593 ggatctgcatgcgctgggttctgcccgcgcagacccccacctctgtgacttcctggagaa 652
|||||||||||| |||||||||| | ||||||| |||||| ||||||| || ||| |||
Sbjct: 18794616 ggatctgcatgccctgggttctggctgcgcagagccccacttctgtgattttctgaagag 18794675
Query: 653 ccacttcctggatgaggaggtgaagctcatcaagaagatgggcgaccacctgaccaa 709
|||| ||| | ||| ||||||| ||||| ||||||||||||| |||||||||||
Sbjct: 18794676 ccacaccctaaaagagcaggtgaaactcatggagaagatgggcgatcacctgaccaa 18794732
>gb|GL893735.2| Sus scrofa unplaced genomic scaffold ChrUScaf1620
Length = 145580
Score = 347 bits (175), Expect = 7e-93
Identities = 432/511 (84%), Gaps = 10/511 (1%)
Strand = Plus / Plus
Query: 421 tggccgaggagaagcgcgagggttcggagcgtctcttgaaaatgcaaaaccagcgcggtg 480
|||| ||||||||||| |||||| |||||||||||| ||||||||||||||||| ||||
Sbjct: 87857 tggcagaggagaagcgtgagggtgcggagcgtctctggaaaatgcaaaaccagcctggtg 87916
Query: 481 gccgcgccctcttccaggacgtgcagaaaccatctcaagatgagtggggtaaaacccagg 540
|| | ||||||||| ||||||||||||| || |||||||||||||||||| |||||||||
Sbjct: 87917 gctgtgccctcttc-aggacgtgcagaagccgtctcaagatgagtggggtgaaacccagg 87975
Query: 541 acgctatggaagccgcccttcacttggagaagggactgaaccaggctcttgtggatctgc 600
|||| ||||||| ||| ||| |||||||||| ||||||||||| ||| |||||| |
Sbjct: 87976 gcgctgtggaagctgccattctcttggagaagaacctgaaccaggcccttttggatccgt 88035
Query: 601 atgcgctgggttctgcccgcgcagacccccacctctgtgacttcctggagaaccacttcc 660
|| ||||||||||||||||||||||||| |||| | ||||||||||||| |||| |||
Sbjct: 88036 gcgccctgggttctgcccgcgcagaccccctcctccgggacttcctggagagccacgtcc 88095
Query: 661 tggatgaggaggtgaagctcatcaagaagatgggcgaccacctgaccaacctgcgcaggc 720
|||||||||||||| ||||| ||| ||||||||||||||||||| ||| ||| |||||||
Sbjct: 88096 tggatgaggaggtgcagctcctcaggaagatgggcgaccacctggccaccctccgcaggc 88155
Query: 721 tctctggtcccc-----aggctgggctgggcgagtacctcttcgaaaggctcacactcaa 775
| | ||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 88156 tgt-gggtccccgggctgggctgggctgggcgagtacctcttcgaaaggctcaccctcaa 88214
Query: 776 gcacgactaggaatctctgggagccaggggccttggaggcgctcctctgggtgctgggct 835
|||||||||| | |||||| |||| ||||| ||| || | ||||| ||||||
Sbjct: 88215 gcacgactagtagcctctggagcccagtagcctttaaggagcccttctggtgcctgggc- 88273
Query: 836 ttctgcggaaagccctttctgcagccacgaagcaccattcttaacaccctggagccctct 895
|||||| |||||| |||| |||| | | ||||| || | | ||||||||||||||||
Sbjct: 88274 ttctgccagaagccc-ctctggagcc-ccaggcaccgttttaaccaccctggagccctct 88331
Query: 896 cccaagtcttggaccaaatggaaacaataaa 926
|||||||||||||||| ||||||||||||||
Sbjct: 88332 cccaagtcttggaccagatggaaacaataaa 88362
Score = 165 bits (83), Expect = 6e-38
Identities = 138/155 (89%), Gaps = 1/155 (0%)
Strand = Plus / Plus
Query: 73 gatctgtctcttgcttcaacagtgtttggacggaacagacccagggacgccccttgctcc 132
|||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||| |
Sbjct: 87595 gatctgtctcttgcttcaacagtgtttggagggaacagacccggggacaccccttgcttc 87654
Query: 133 agcctccgactaccctccaaccttttttccagtcgcaaccttcggactccgcctctcagc 192
|||||| ||||||||||||||| ||| |||||||| ||||||||| || ||| ||| ||
Sbjct: 87655 agcctctgactaccctccaacc-tttatccagtcgtgaccttcggaatcagcccctcggc 87713
Query: 193 tatcttcagtctccgggaccagccaacaccatttt 227
| |||| ||||| |||||||||||||||||||||
Sbjct: 87714 tgtctttggtctctgggaccagccaacaccatttt 87748
>Sscrofa_Chr18
|| Length = 61220071
Score = 285 bits (144), Expect = 2e-74
Identities = 518/643 (80%), Gaps = 19/643 (2%)
Strand = Plus / Minus
Query: 72 ggatctgtctcttgcttcaacagtgtttggacggaacagacccagggacgccccttgctc 131
||||||| |||| ||||||| ||||||||| |||||||||||||| | |||||||||
Sbjct: 36944253 ggatctgcctctggcttcaa--gtgtttggatagaacagacccaggggcaacccttgctc 36944196
Query: 132 cagcctccgactacc----ctccaaccttttttccagtcgcaaccttcggactccgcctc 187
|||||||| || ||| | |||| | ||||| ||||||| ||||| || || ||| |
Sbjct: 36944195 cagcctccaaccaccgcccccccaaacctttttgtagtcgcagccttcagaatcagccac 36944136
Query: 188 tcagctatcttcagtctccgggaccagccaacaccattttttgagcttagctccttattg 247
||||||||| || |||||||||||||||||||||||||| | | |||||||||
Sbjct: 36944135 tcagctatcctc-------gggaccagccaacaccattttttgagttaaactccttatta 36944083
Query: 248 ccgaccagccatgagctcccaggttcgtcagaattattccaccgaggtggaggccttcgt 307
|| || ||| |||||||||| ||||||| | ||| |||||| |||||||||| |||
Sbjct: 36944082 cctgtcaaccaggagctcccagattcgtcaaacttactccaccagggtggaggccgacgt 36944023
Query: 308 caaccgcctgatcaacatgcatctgcaggcctcctacacctacctctctctgggcttcta 367
| ||| |||| | ||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 36944022 cgaccacctggtgg---tgcatctacagccctcctacacctacctctctctgggcttcta 36943966
Query: 368 tttcaaccgcgacgatgtggctctggagggcgtgagtcannnnnnncgcgaattggccga 427
||| || ||| |||| ||||||||||||||| | || | | |||||| ||
Sbjct: 36943965 tttggactgcgttgatgaagctctggagggcgtgggccacttcttccacagattggctga 36943906
Query: 428 ggagaagcgcgagggttcggagcgtctcttgaaaatgcaaaaccagcgcggtggccgcgc 487
| |||||| | || | |||| ||||||||||||||||||| |||| | | || |||
Sbjct: 36943905 g---aagcgcaaaggcacagagcccctcttgaaaatgcaaaaccggcgcagcgaccacgc 36943849
Query: 488 cctcttccaggacgtgcagaaaccatctcaagatgagtggggtaaaacccaggacgctat 547
|||||||||||||||||||| ||||| | |||||| |||||||||||||||| ||| |
Sbjct: 36943848 tctcttccaggacgtgcagaagccatcagaggatgaggggggtaaaacccaggatgctct 36943789
Query: 548 ggaagccgcccttcacttggagaagggactgaaccaggctcttgtggatctgcatgcgct 607
|||||| |||||| | |||||||| || | |||||| ||| ||||||||||||| ||
Sbjct: 36943788 ggaagctgcccttttcatggagaagaacctaacccaggcccttttggatctgcatgccct 36943729
Query: 608 gggttctgcccgcgcagacccccacctctgtgacttcctggagaaccacttcctggatga 667
||| |||||||| ||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 36943728 ggggtctgcccgtacagacccccgcctctgtgacttcctggagagccacttcctggatgg 36943669
Query: 668 ggaggtgaagctcatcaagaagatgggcgaccacctgaccaac 710
| ||||||| |||||||||||||||||| | ||||||||||||
Sbjct: 36943668 gcaggtgaaactcatcaagaagatgggcaatcacctgaccaac 36943626
Score = 133 bits (67), Expect = 2e-28
Identities = 232/283 (81%), Gaps = 3/283 (1%)
Strand = Plus / Plus
Query: 462 atgcaaaaccagcgcggtggccgcgccctcttccaggacgtgcagaaaccatctcaagat 521
||||||||||||| |||||||||||||||||||||||||| || ||| || |||| |
Sbjct: 3143703 atgcaaaaccagcccggtggccgcgccctcttccaggacgggcggaagcc-tctcccggc 3143761
Query: 522 gagtggggtaaaacccaggacgctatggaagccgcccttcacttggagaagggactgaac 581
|||||| | ||| ||||||||||| ||||||| ||| ||| | ||||||| | ||||||
Sbjct: 3143762 gagtggaggaaaccccaggacgctgtggaagctgccgttctttcggagaagagcctgaac 3143821
Query: 582 caggctcttgtggatctgcatgcgctgggttctgcccgcgcagacccccacctctgtgac 641
||||| ||| ||| |||| ||| ||| |||||||||| || |||||| |||||| |||
Sbjct: 3143822 caggcccttctgggcctgcgtgccctgagttctgcccgggccaacccccgcctctgcgac 3143881
Query: 642 ttcctggagaaccacttcctggatgaggaggtgaagctcatcaagaagatgggcgaccac 701
|||| |||| |||| | | || |||||| | ||||||| || | ||||||||| || |
Sbjct: 3143882 ttcccggagggccacgttccgggtgaggacgggaagctcttcggggagatgggcggcc-c 3143940
Query: 702 ctgaccaacctgcgcaggctctctggtccccaggctgggctgg 744
|||||| |||| |||||||| |||||||||||||||||||||
Sbjct: 3143941 ctgaccgacctccgcaggct-gctggtccccaggctgggctgg 3143982
Score = 133 bits (67), Expect = 2e-28
Identities = 232/283 (81%), Gaps = 3/283 (1%)
Strand = Plus / Minus
Query: 462 atgcaaaaccagcgcggtggccgcgccctcttccaggacgtgcagaaaccatctcaagat 521
||||||||||||| |||||||||||||||||||||||||| || ||| || |||| |
Sbjct: 3222615 atgcaaaaccagcccggtggccgcgccctcttccaggacgggcggaagcc-tctcccggc 3222557
Query: 522 gagtggggtaaaacccaggacgctatggaagccgcccttcacttggagaagggactgaac 581
|||||| | ||| ||||||||||| ||||||| ||| ||| | ||||||| | ||||||
Sbjct: 3222556 gagtggaggaaaccccaggacgctgtggaagctgccgttctttcggagaagagcctgaac 3222497
Query: 582 caggctcttgtggatctgcatgcgctgggttctgcccgcgcagacccccacctctgtgac 641
||||| ||| ||| |||| ||| ||| |||||||||| || |||||| |||||| |||
Sbjct: 3222496 caggcccttctgggcctgcgtgccctgagttctgcccgggccaacccccgcctctgcgac 3222437
Query: 642 ttcctggagaaccacttcctggatgaggaggtgaagctcatcaagaagatgggcgaccac 701
|||| |||| |||| | | || |||||| | ||||||| || | ||||||||| || |
Sbjct: 3222436 ttcccggagggccacgttccgggtgaggacgggaagctcttcggggagatgggcggcc-c 3222378
Query: 702 ctgaccaacctgcgcaggctctctggtccccaggctgggctgg 744
|||||| |||| |||||||| |||||||||||||||||||||
Sbjct: 3222377 ctgaccgacctccgcaggct-gctggtccccaggctgggctgg 3222336
Score = 77.8 bits (39), Expect = 1e-11
Identities = 45/47 (95%)
Strand = Plus / Minus
Query: 880 caccctggagccctctcccaagtcttggaccaaatggaaacaataaa 926
||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 36943458 caccctggagccctctccccaggcttggaccaaatggaaacaataaa 36943412
Score = 58.0 bits (29), Expect = 9e-06
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 880 caccctggagccctctcccaagtcttggaccaaatggaaac 920
|||||||| ||||||||||| ||||||| ||||||||||||
Sbjct: 3144085 caccctggcgccctctcccacgtcttgggccaaatggaaac 3144125
Score = 58.0 bits (29), Expect = 9e-06
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 880 caccctggagccctctcccaagtcttggaccaaatggaaac 920
|||||||| ||||||||||| ||||||| ||||||||||||
Sbjct: 3222233 caccctggcgccctctcccacgtcttgggccaaatggaaac 3222193
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,164,072
Number of extensions: 542
Number of successful extensions: 542
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 483
Number of HSP's successfully gapped: 175
Length of query: 961
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 940
Effective length of database: 2,808,413,156
Effective search space: 2639908366640
Effective search space used: 2639908366640
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)