Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001774
(1299 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014847.1| RNA-binding protein Raly [Bos taurus]. 338 6e-93
Alignment gi|NP_001071400.1| RNA-binding Raly-like protein [Bos taurus]. 217 2e-56
Alignment gi|NP_001029567.1| heterogeneous nuclear ribonucleoprotein C [B... 174 2e-43
Alignment gi|NP_001030349.1| serine/arginine-rich splicing factor 6 [Bos ... 54 3e-07
Alignment gi|NP_001014901.1| RNA-binding protein 14 [Bos taurus]. 54 4e-07
>ref|NP_001014847.1| RNA-binding protein Raly [Bos taurus].
Length = 283
Score = 338 bits (867), Expect = 6e-93
Identities = 178/210 (84%), Positives = 180/210 (85%)
Frame = +3
Query: 558 MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFV 737
MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFV
Sbjct: 1 MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFV 60
Query: 738 QYANERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPKGLKRTASAIYRLFDYRGXXXX 917
QYANERHARAAV+GENGRVLAGQTLDINMAGEPKPNRPKGLKR ASAIYRLFDYRG
Sbjct: 61 QYANERHARAAVVGENGRVLAGQTLDINMAGEPKPNRPKGLKRAASAIYRLFDYRGRLSP 120
Query: 918 XXXXXXXXXXXXXXXXXXXXXXXXTIPVKLFARSTAITTGSAKIKLKSSELQAIKTELTQ 1097
TIPVKLFARSTAITTG+AKIKLKSSELQ IKTELTQ
Sbjct: 121 VPVPRAVPVKRPRVTVPLVRRVKTTIPVKLFARSTAITTGTAKIKLKSSELQTIKTELTQ 180
Query: 1098 IKSNIDALLGRLEQIAEEQKANPDGKKKGE 1187
IKSNIDALLGRLEQIAEEQKANPDGKKKGE
Sbjct: 181 IKSNIDALLGRLEQIAEEQKANPDGKKKGE 210
>ref|NP_001071400.1| RNA-binding Raly-like protein [Bos taurus].
Length = 293
Score = 217 bits (552), Expect = 2e-56
Identities = 126/236 (53%), Positives = 146/236 (61%), Gaps = 28/236 (11%)
Frame = +3
Query: 558 MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFV 737
M+ K QTSNVTNKNDPKSINSRVFIGNLNTA+VKK D+E IFSKYG++ GCSVHKGYAFV
Sbjct: 1 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60
Query: 738 QYANERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPK-GLKRTASAIY---------- 884
QY +ERHARAAV GEN R++AGQ LDINMAGEPKP RPK G KR SA+Y
Sbjct: 61 QYMSERHARAAVAGENARIIAGQPLDINMAGEPKPYRPKPGNKRPISALYRLESKEPFLS 120
Query: 885 -----------------RLFDYRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIPVKLFA 1013
RLFDY G +K +
Sbjct: 121 VGGYVFDYDYYRDDFYNRLFDYHG-RVPPPPRAVIPLKRPRAAVTTTRRGKGVFSMKGGS 179
Query: 1014 RSTAITTGSAKIKLKSSELQAIKTELTQIKSNIDALLGRLEQIAEEQKANPDGKKK 1181
RS + S+ KLKS ELQ IK ELTQIK+ ID+LLGRLE+I ++QKA + +KK
Sbjct: 180 RSAVSGSSSSGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKK 235
>ref|NP_001029567.1| heterogeneous nuclear ribonucleoprotein C [Bos taurus].
Length = 294
Score = 174 bits (441), Expect = 2e-43
Identities = 102/209 (48%), Positives = 126/209 (60%), Gaps = 17/209 (8%)
Frame = +3
Query: 579 SNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFVQYANERH 758
SNVTNK DP+S+NSRVFIGNLNT VVKKSDVE IFSKYG++ GCSVHKG+AFVQY NER+
Sbjct: 3 SNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERN 62
Query: 759 ARAAVLGENGRVLAGQTLDINMAGEPKPNRPK-GLKRTASAIY----------------R 887
ARAAV GE+GR++AGQ LDIN+A EPK NR K G+KR+A+ +Y R
Sbjct: 63 ARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYYDR 122
Query: 888 LFDYRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIPVKLFARSTAITTGSAKIKLKSSE 1067
++ Y ++S + S KLK +
Sbjct: 123 MYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFN--SKSGQRGSSSKSGKLKGDD 180
Query: 1068 LQAIKTELTQIKSNIDALLGRLEQIAEEQ 1154
LQ IK ELTQIK +D+LL LE+I +EQ
Sbjct: 181 LQTIKKELTQIKQKVDSLLESLEKIEKEQ 209
>ref|NP_001030349.1| serine/arginine-rich splicing factor 6 [Bos taurus].
Length = 345
Score = 53.9 bits (128), Expect = 3e-07
Identities = 29/76 (38%), Positives = 45/76 (59%)
Frame = +3
Query: 621 RVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFVQYANERHARAAVLGENGRVLA 800
RV+IG L+ V +K D++ FS YGR+ G + GY FV++ + R A AV NG+ L
Sbjct: 3 RVYIGRLSYNVREK-DIQRFFSGYGRLLGIDLKNGYGFVEFEDSRDADDAVYELNGKELC 61
Query: 801 GQTLDINMAGEPKPNR 848
G+ + + A P+ +R
Sbjct: 62 GERVIVEHARGPRRDR 77
>ref|NP_001014901.1| RNA-binding protein 14 [Bos taurus].
Length = 669
Score = 53.5 bits (127), Expect = 4e-07
Identities = 26/90 (28%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Frame = +3
Query: 585 VTNKNDPKSINS-RVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFVQYANERHA 761
V + P+ +N+ ++F+GN++ A + ++ ++F + GRV C V K YAFV E A
Sbjct: 67 VVEMSRPRPLNTWKIFVGNVSAACTSQ-ELRSLFERRGRVIECDVVKDYAFVHMEKEADA 125
Query: 762 RAAVLGENGRVLAGQTLDINMAGEPKPNRP 851
+AA+ NG+ + G+ +++ ++ + + P
Sbjct: 126 KAAIAQLNGKEVKGKRINVELSTKGQKKGP 155
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,427,481
Number of extensions: 1031967
Number of successful extensions: 4477
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4436
Number of HSP's successfully gapped: 6
Length of query: 433
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 328
Effective length of database: 14,207,134
Effective search space: 4659939952
Effective search space used: 4659939952
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001774
(1299 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_542969.2| PREDICTED: similar to RNA-binding protein Raly ... 325 4e-89
Alignment gi|XP_544154.2| PREDICTED: similar to autoantigenic hnRNP-assoc... 219 6e-57
Alignment gi|XP_863693.1| PREDICTED: similar to Heterogeneous nuclear rib... 176 3e-44
Alignment gi|XP_867308.1| PREDICTED: similar to heterogeneous nuclear rib... 174 1e-43
Alignment gi|XP_532622.1| PREDICTED: similar to heterogeneous nuclear rib... 174 2e-43
Alignment gi|XP_863957.1| PREDICTED: similar to heterogeneous nuclear rib... 174 2e-43
Alignment gi|XP_863937.1| PREDICTED: similar to heterogeneous nuclear rib... 174 2e-43
Alignment gi|XP_863916.1| PREDICTED: similar to heterogeneous nuclear rib... 174 2e-43
Alignment gi|XP_863897.1| PREDICTED: similar to heterogeneous nuclear rib... 174 2e-43
Alignment gi|XP_863871.1| PREDICTED: similar to heterogeneous nuclear rib... 174 2e-43
>ref|XP_542969.2| PREDICTED: similar to RNA-binding protein Raly (hnRNP associated with
lethal yellow protein) (Maternally expressed hnRNP
C-related protein) [Canis familiaris].
Length = 293
Score = 325 bits (834), Expect = 4e-89
Identities = 177/226 (78%), Positives = 178/226 (78%), Gaps = 16/226 (7%)
Frame = +3
Query: 558 MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFV 737
MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFV
Sbjct: 1 MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFV 60
Query: 738 QYANERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPKGLKRTASAIY----------- 884
QYANERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPKGLKR AS IY
Sbjct: 61 QYANERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPKGLKRAASVIYSGYSFDYDYYR 120
Query: 885 -----RLFDYRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIPVKLFARSTAITTGSAKI 1049
RLFDYRG TIPVKLFARSTAIT GSAKI
Sbjct: 121 DDFYDRLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTTIPVKLFARSTAITAGSAKI 180
Query: 1050 KLKSSELQAIKTELTQIKSNIDALLGRLEQIAEEQKANPDGKKKGE 1187
KLKSSELQ IKTELTQIKSNIDALLGRLEQIAEEQKANPDGKKKG+
Sbjct: 181 KLKSSELQTIKTELTQIKSNIDALLGRLEQIAEEQKANPDGKKKGD 226
>ref|XP_544154.2| PREDICTED: similar to autoantigenic hnRNP-associated with lethal
yellow isoform 1 [Canis familiaris].
Length = 293
Score = 219 bits (557), Expect = 6e-57
Identities = 127/236 (53%), Positives = 147/236 (62%), Gaps = 28/236 (11%)
Frame = +3
Query: 558 MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFV 737
M+ K QTSNVTNKNDPKSINSRVFIGNLNTA+VKK D+E IFSKYG++ GCSVHKGYAFV
Sbjct: 1 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60
Query: 738 QYANERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPK-GLKRTASAIY---------- 884
QY +ERHARAAV GEN R++AGQ LDINMAGEPKP RPK G KR SA+Y
Sbjct: 61 QYMSERHARAAVAGENARIIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 120
Query: 885 -----------------RLFDYRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIPVKLFA 1013
RLFDY G +K +
Sbjct: 121 VGGYVFDYDYYREDFYNRLFDYHG-RVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGS 179
Query: 1014 RSTAITTGSAKIKLKSSELQAIKTELTQIKSNIDALLGRLEQIAEEQKANPDGKKK 1181
RST + S+ KLKS ELQ IK ELTQIK+ ID+LLGRLE+I ++QKA + +KK
Sbjct: 180 RSTVSGSSSSGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKK 235
>ref|XP_863693.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoproteins C1/C2
(hnRNP C1 / hnRNP C2) isoform 16 [Canis familiaris].
Length = 272
Score = 176 bits (447), Expect = 3e-44
Identities = 101/194 (52%), Positives = 125/194 (64%), Gaps = 2/194 (1%)
Frame = +3
Query: 579 SNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFVQYANERH 758
SNVTNK DP+S+NSRVFIGNLNT VVKKSDVE IFSKYG++ GCSVHKG+AFVQY NER+
Sbjct: 3 SNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERN 62
Query: 759 ARAAVLGENGRVLAGQTLDINMAGEPKPNRPK-GLKRTASAIY-RLFDYRGXXXXXXXXX 932
ARAAV GE+GR++AGQ LDIN+A EPK NR K G+KR+A+ +Y FD
Sbjct: 63 ARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFD----LDYDFQRD 118
Query: 933 XXXXXXXXXXXXXXXXXXXTIPVKLFARSTAITTGSAKIKLKSSELQAIKTELTQIKSNI 1112
+P K +G+ ++K +LQ IK ELTQIK +
Sbjct: 119 YYDRYVKARVPPPPPIARAVVPSK-----RQRVSGNTSRRVKGDDLQTIKKELTQIKQKV 173
Query: 1113 DALLGRLEQIAEEQ 1154
D+LL LE+I +EQ
Sbjct: 174 DSLLESLEKIEKEQ 187
>ref|XP_867308.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein C
isoform b isoform 8 [Canis familiaris].
Length = 273
Score = 174 bits (442), Expect = 1e-43
Identities = 99/200 (49%), Positives = 124/200 (62%), Gaps = 1/200 (0%)
Frame = +3
Query: 579 SNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFVQYANERH 758
SNVTNK DP+S+NSRVFIGNLNT VVKKSDVE IFSKYG++ GCSVHKG+AFVQY NER+
Sbjct: 3 SNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERN 62
Query: 759 ARAAVLGENGRVLAGQTLDINMAGEPKPNRPK-GLKRTASAIYRLFDYRGXXXXXXXXXX 935
ARAAV GE+GR++AG+ LDIN+A EPK NR K G+KR+A+ +Y G
Sbjct: 63 ARAAVAGEDGRMIAGRLLDINLAAEPKVNRGKAGVKRSAAEMY------GSSFDLDYDLQ 116
Query: 936 XXXXXXXXXXXXXXXXXXTIPVKLFARSTAITTGSAKIKLKSSELQAIKTELTQIKSNID 1115
I + +G+ + K +LQ IK ELTQIK +D
Sbjct: 117 RDHYDRMYSYPARGPPPPPIARAVVPSKRPRVSGNTSRRGKRDDLQTIKKELTQIKQKVD 176
Query: 1116 ALLGRLEQIAEEQKANPDGK 1175
+LL LE+I +EQ + K
Sbjct: 177 SLLESLERIEKEQSKQGEMK 196
>ref|XP_532622.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein C
isoform b isoform 1 [Canis familiaris].
Length = 294
Score = 174 bits (441), Expect = 2e-43
Identities = 102/209 (48%), Positives = 126/209 (60%), Gaps = 17/209 (8%)
Frame = +3
Query: 579 SNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFVQYANERH 758
SNVTNK DP+S+NSRVFIGNLNT VVKKSDVE IFSKYG++ GCSVHKG+AFVQY NER+
Sbjct: 3 SNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERN 62
Query: 759 ARAAVLGENGRVLAGQTLDINMAGEPKPNRPK-GLKRTASAIY----------------R 887
ARAAV GE+GR++AGQ LDIN+A EPK NR K G+KR+A+ +Y R
Sbjct: 63 ARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYYDR 122
Query: 888 LFDYRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIPVKLFARSTAITTGSAKIKLKSSE 1067
++ Y ++S + S KLK +
Sbjct: 123 MYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFN--SKSGQRGSSSKSGKLKGDD 180
Query: 1068 LQAIKTELTQIKSNIDALLGRLEQIAEEQ 1154
LQ IK ELTQIK +D+LL LE+I +EQ
Sbjct: 181 LQTIKKELTQIKQKVDSLLESLEKIEKEQ 209
>ref|XP_863957.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein C
isoform b isoform 27 [Canis familiaris].
Length = 294
Score = 174 bits (441), Expect = 2e-43
Identities = 102/209 (48%), Positives = 126/209 (60%), Gaps = 17/209 (8%)
Frame = +3
Query: 579 SNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFVQYANERH 758
SNVTNK DP+S+NSRVFIGNLNT VVKKSDVE IFSKYG++ GCSVHKG+AFVQY NER+
Sbjct: 3 SNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERN 62
Query: 759 ARAAVLGENGRVLAGQTLDINMAGEPKPNRPK-GLKRTASAIY----------------R 887
ARAAV GE+GR++AGQ LDIN+A EPK NR K G+KR+A+ +Y R
Sbjct: 63 ARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYYDR 122
Query: 888 LFDYRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIPVKLFARSTAITTGSAKIKLKSSE 1067
++ Y ++S + S KLK +
Sbjct: 123 MYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFN--SKSGQRGSSSKSGKLKGDD 180
Query: 1068 LQAIKTELTQIKSNIDALLGRLEQIAEEQ 1154
LQ IK ELTQIK +D+LL LE+I +EQ
Sbjct: 181 LQTIKKELTQIKQKVDSLLESLEKIEKEQ 209
>ref|XP_863937.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein C
isoform b isoform 26 [Canis familiaris].
Length = 294
Score = 174 bits (441), Expect = 2e-43
Identities = 102/209 (48%), Positives = 126/209 (60%), Gaps = 17/209 (8%)
Frame = +3
Query: 579 SNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFVQYANERH 758
SNVTNK DP+S+NSRVFIGNLNT VVKKSDVE IFSKYG++ GCSVHKG+AFVQY NER+
Sbjct: 3 SNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERN 62
Query: 759 ARAAVLGENGRVLAGQTLDINMAGEPKPNRPK-GLKRTASAIY----------------R 887
ARAAV GE+GR++AGQ LDIN+A EPK NR K G+KR+A+ +Y R
Sbjct: 63 ARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYYDR 122
Query: 888 LFDYRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIPVKLFARSTAITTGSAKIKLKSSE 1067
++ Y ++S + S KLK +
Sbjct: 123 MYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFN--SKSGQRGSSSKSGKLKGDD 180
Query: 1068 LQAIKTELTQIKSNIDALLGRLEQIAEEQ 1154
LQ IK ELTQIK +D+LL LE+I +EQ
Sbjct: 181 LQTIKKELTQIKQKVDSLLESLEKIEKEQ 209
>ref|XP_863916.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein C
isoform b isoform 25 [Canis familiaris].
Length = 294
Score = 174 bits (441), Expect = 2e-43
Identities = 102/209 (48%), Positives = 126/209 (60%), Gaps = 17/209 (8%)
Frame = +3
Query: 579 SNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFVQYANERH 758
SNVTNK DP+S+NSRVFIGNLNT VVKKSDVE IFSKYG++ GCSVHKG+AFVQY NER+
Sbjct: 3 SNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERN 62
Query: 759 ARAAVLGENGRVLAGQTLDINMAGEPKPNRPK-GLKRTASAIY----------------R 887
ARAAV GE+GR++AGQ LDIN+A EPK NR K G+KR+A+ +Y R
Sbjct: 63 ARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYYDR 122
Query: 888 LFDYRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIPVKLFARSTAITTGSAKIKLKSSE 1067
++ Y ++S + S KLK +
Sbjct: 123 MYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFN--SKSGQRGSSSKSGKLKGDD 180
Query: 1068 LQAIKTELTQIKSNIDALLGRLEQIAEEQ 1154
LQ IK ELTQIK +D+LL LE+I +EQ
Sbjct: 181 LQTIKKELTQIKQKVDSLLESLEKIEKEQ 209
>ref|XP_863897.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein C
isoform b isoform 24 [Canis familiaris].
Length = 294
Score = 174 bits (441), Expect = 2e-43
Identities = 102/209 (48%), Positives = 126/209 (60%), Gaps = 17/209 (8%)
Frame = +3
Query: 579 SNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFVQYANERH 758
SNVTNK DP+S+NSRVFIGNLNT VVKKSDVE IFSKYG++ GCSVHKG+AFVQY NER+
Sbjct: 3 SNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERN 62
Query: 759 ARAAVLGENGRVLAGQTLDINMAGEPKPNRPK-GLKRTASAIY----------------R 887
ARAAV GE+GR++AGQ LDIN+A EPK NR K G+KR+A+ +Y R
Sbjct: 63 ARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYYDR 122
Query: 888 LFDYRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIPVKLFARSTAITTGSAKIKLKSSE 1067
++ Y ++S + S KLK +
Sbjct: 123 MYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFN--SKSGQRGSSSKSGKLKGDD 180
Query: 1068 LQAIKTELTQIKSNIDALLGRLEQIAEEQ 1154
LQ IK ELTQIK +D+LL LE+I +EQ
Sbjct: 181 LQTIKKELTQIKQKVDSLLESLEKIEKEQ 209
>ref|XP_863871.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein C
isoform b isoform 23 [Canis familiaris].
Length = 294
Score = 174 bits (441), Expect = 2e-43
Identities = 102/209 (48%), Positives = 126/209 (60%), Gaps = 17/209 (8%)
Frame = +3
Query: 579 SNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFVQYANERH 758
SNVTNK DP+S+NSRVFIGNLNT VVKKSDVE IFSKYG++ GCSVHKG+AFVQY NER+
Sbjct: 3 SNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERN 62
Query: 759 ARAAVLGENGRVLAGQTLDINMAGEPKPNRPK-GLKRTASAIY----------------R 887
ARAAV GE+GR++AGQ LDIN+A EPK NR K G+KR+A+ +Y R
Sbjct: 63 ARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYYDR 122
Query: 888 LFDYRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIPVKLFARSTAITTGSAKIKLKSSE 1067
++ Y ++S + S KLK +
Sbjct: 123 MYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFN--SKSGQRGSSSKSGKLKGDD 180
Query: 1068 LQAIKTELTQIKSNIDALLGRLEQIAEEQ 1154
LQ IK ELTQIK +D+LL LE+I +EQ
Sbjct: 181 LQTIKKELTQIKQKVDSLLESLEKIEKEQ 209
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,399,123
Number of extensions: 949241
Number of successful extensions: 4596
Number of sequences better than 1.0e-05: 33
Number of HSP's gapped: 4550
Number of HSP's successfully gapped: 34
Length of query: 433
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 327
Effective length of database: 15,340,888
Effective search space: 5016470376
Effective search space used: 5016470376
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001774
(1299 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031393.2| RNA-binding protein Raly isoform 2 [Homo sapien... 324 1e-88
Alignment gi|NP_057951.1| RNA-binding protein Raly isoform 1 [Homo sapien... 314 1e-85
Alignment gi|NP_001093863.1| RNA-binding Raly-like protein isoform 2 [Hom... 219 4e-57
Alignment gi|NP_001093862.1| RNA-binding Raly-like protein isoform 2 [Hom... 219 4e-57
Alignment gi|NP_001093861.1| RNA-binding Raly-like protein isoform 1 [Hom... 219 4e-57
Alignment gi|NP_776247.3| RNA-binding Raly-like protein isoform 2 [Homo s... 219 4e-57
Alignment gi|NP_001070911.1| heterogeneous nuclear ribonucleoproteins C1/... 177 2e-44
Alignment gi|NP_004491.2| heterogeneous nuclear ribonucleoproteins C1/C2 ... 177 2e-44
Alignment gi|NP_001013653.1| heterogeneous nuclear ribonucleoprotein C-li... 166 4e-41
Alignment gi|NP_001139653.1| heterogeneous nuclear ribonucleoprotein C-li... 164 2e-40
>ref|NP_031393.2| RNA-binding protein Raly isoform 2 [Homo sapiens].
Length = 290
Score = 324 bits (831), Expect = 1e-88
Identities = 169/210 (80%), Positives = 176/210 (83%)
Frame = +3
Query: 558 MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFV 737
MSLK+Q SNVTNKNDPKSINSRVFIGNLNTA+VKKSDVETIFSKYGRVAGCSVHKGYAFV
Sbjct: 1 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV 60
Query: 738 QYANERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPKGLKRTASAIYRLFDYRGXXXX 917
QY+NERHARAAVLGENGRVLAGQTLDINMAGEPKP+RPKGLKR ASAIYRLFDYRG
Sbjct: 61 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPKGLKRAASAIYRLFDYRGRLSP 120
Query: 918 XXXXXXXXXXXXXXXXXXXXXXXXTIPVKLFARSTAITTGSAKIKLKSSELQAIKTELTQ 1097
+PVKLFARSTA+TT SAKIKLKSSELQAIKTELTQ
Sbjct: 121 VPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKIKLKSSELQAIKTELTQ 180
Query: 1098 IKSNIDALLGRLEQIAEEQKANPDGKKKGE 1187
IKSNIDALL RLEQIA EQKANPDGKKKG+
Sbjct: 181 IKSNIDALLSRLEQIAAEQKANPDGKKKGD 210
>ref|NP_057951.1| RNA-binding protein Raly isoform 1 [Homo sapiens].
Length = 306
Score = 314 bits (804), Expect = 1e-85
Identities = 169/226 (74%), Positives = 176/226 (77%), Gaps = 16/226 (7%)
Frame = +3
Query: 558 MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFV 737
MSLK+Q SNVTNKNDPKSINSRVFIGNLNTA+VKKSDVETIFSKYGRVAGCSVHKGYAFV
Sbjct: 1 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV 60
Query: 738 QYANERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPKGLKRTASAIY----------- 884
QY+NERHARAAVLGENGRVLAGQTLDINMAGEPKP+RPKGLKR ASAIY
Sbjct: 61 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPKGLKRAASAIYSGYIFDYDYYR 120
Query: 885 -----RLFDYRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIPVKLFARSTAITTGSAKI 1049
RLFDYRG +PVKLFARSTA+TT SAKI
Sbjct: 121 DDFYDRLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKI 180
Query: 1050 KLKSSELQAIKTELTQIKSNIDALLGRLEQIAEEQKANPDGKKKGE 1187
KLKSSELQAIKTELTQIKSNIDALL RLEQIA EQKANPDGKKKG+
Sbjct: 181 KLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGD 226
>ref|NP_001093863.1| RNA-binding Raly-like protein isoform 2 [Homo sapiens].
Length = 291
Score = 219 bits (558), Expect = 4e-57
Identities = 130/236 (55%), Positives = 148/236 (62%), Gaps = 28/236 (11%)
Frame = +3
Query: 558 MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFV 737
M+ K QTSNVTNKNDPKSINSRVFIGNLNTA+VKK D+E IFSKYG++ GCSVHKGYAFV
Sbjct: 1 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60
Query: 738 QYANERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPK-GLKRTASAIY---------- 884
QY +ERHARAAV GEN RV+AGQ LDINMAGEPKP RPK G KR SA+Y
Sbjct: 61 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 120
Query: 885 -----------------RLFDYRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIPVKLFA 1013
RLFDY G +K +
Sbjct: 121 VGGYVFDYDYYRDDFYNRLFDYHG-RVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGS 179
Query: 1014 RSTAITTGSAKIKLKSSELQAIKTELTQIKSNIDALLGRLEQIAEEQKANPDGKKK 1181
RSTA +GS KLKS ELQ IK ELTQIK+ ID+LLGRLE+I ++QKA + +KK
Sbjct: 180 RSTA--SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKK 233
>ref|NP_001093862.1| RNA-binding Raly-like protein isoform 2 [Homo sapiens].
Length = 291
Score = 219 bits (558), Expect = 4e-57
Identities = 130/236 (55%), Positives = 148/236 (62%), Gaps = 28/236 (11%)
Frame = +3
Query: 558 MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFV 737
M+ K QTSNVTNKNDPKSINSRVFIGNLNTA+VKK D+E IFSKYG++ GCSVHKGYAFV
Sbjct: 1 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60
Query: 738 QYANERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPK-GLKRTASAIY---------- 884
QY +ERHARAAV GEN RV+AGQ LDINMAGEPKP RPK G KR SA+Y
Sbjct: 61 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 120
Query: 885 -----------------RLFDYRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIPVKLFA 1013
RLFDY G +K +
Sbjct: 121 VGGYVFDYDYYRDDFYNRLFDYHG-RVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGS 179
Query: 1014 RSTAITTGSAKIKLKSSELQAIKTELTQIKSNIDALLGRLEQIAEEQKANPDGKKK 1181
RSTA +GS KLKS ELQ IK ELTQIK+ ID+LLGRLE+I ++QKA + +KK
Sbjct: 180 RSTA--SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKK 233
>ref|NP_001093861.1| RNA-binding Raly-like protein isoform 1 [Homo sapiens].
Length = 304
Score = 219 bits (558), Expect = 4e-57
Identities = 130/236 (55%), Positives = 148/236 (62%), Gaps = 28/236 (11%)
Frame = +3
Query: 558 MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFV 737
M+ K QTSNVTNKNDPKSINSRVFIGNLNTA+VKK D+E IFSKYG++ GCSVHKGYAFV
Sbjct: 14 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 73
Query: 738 QYANERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPK-GLKRTASAIY---------- 884
QY +ERHARAAV GEN RV+AGQ LDINMAGEPKP RPK G KR SA+Y
Sbjct: 74 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 133
Query: 885 -----------------RLFDYRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIPVKLFA 1013
RLFDY G +K +
Sbjct: 134 VGGYVFDYDYYRDDFYNRLFDYHG-RVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGS 192
Query: 1014 RSTAITTGSAKIKLKSSELQAIKTELTQIKSNIDALLGRLEQIAEEQKANPDGKKK 1181
RSTA +GS KLKS ELQ IK ELTQIK+ ID+LLGRLE+I ++QKA + +KK
Sbjct: 193 RSTA--SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKK 246
>ref|NP_776247.3| RNA-binding Raly-like protein isoform 2 [Homo sapiens].
Length = 291
Score = 219 bits (558), Expect = 4e-57
Identities = 130/236 (55%), Positives = 148/236 (62%), Gaps = 28/236 (11%)
Frame = +3
Query: 558 MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFV 737
M+ K QTSNVTNKNDPKSINSRVFIGNLNTA+VKK D+E IFSKYG++ GCSVHKGYAFV
Sbjct: 1 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60
Query: 738 QYANERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPK-GLKRTASAIY---------- 884
QY +ERHARAAV GEN RV+AGQ LDINMAGEPKP RPK G KR SA+Y
Sbjct: 61 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 120
Query: 885 -----------------RLFDYRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIPVKLFA 1013
RLFDY G +K +
Sbjct: 121 VGGYVFDYDYYRDDFYNRLFDYHG-RVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGS 179
Query: 1014 RSTAITTGSAKIKLKSSELQAIKTELTQIKSNIDALLGRLEQIAEEQKANPDGKKK 1181
RSTA +GS KLKS ELQ IK ELTQIK+ ID+LLGRLE+I ++QKA + +KK
Sbjct: 180 RSTA--SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKK 233
>ref|NP_001070911.1| heterogeneous nuclear ribonucleoproteins C1/C2 isoform b [Homo
sapiens].
Length = 293
Score = 177 bits (449), Expect = 2e-44
Identities = 106/210 (50%), Positives = 129/210 (61%), Gaps = 18/210 (8%)
Frame = +3
Query: 579 SNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFVQYANERH 758
SNVTNK DP+S+NSRVFIGNLNT VVKKSDVE IFSKYG++ GCSVHKG+AFVQY NER+
Sbjct: 3 SNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERN 62
Query: 759 ARAAVLGENGRVLAGQTLDINMAGEPKPNRPK-GLKRTASAIY----------------R 887
ARAAV GE+GR++AGQ LDIN+A EPK NR K G+KR+A+ +Y R
Sbjct: 63 ARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYYDR 122
Query: 888 LFDYRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIPVKLFARSTAITTGSAKI-KLKSS 1064
++ Y K S + GS+K KLK
Sbjct: 123 MYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRG----KSGFNSKSGQRGSSKSGKLKGD 178
Query: 1065 ELQAIKTELTQIKSNIDALLGRLEQIAEEQ 1154
+LQAIK ELTQIK +D+LL LE+I +EQ
Sbjct: 179 DLQAIKKELTQIKQKVDSLLENLEKIEKEQ 208
>ref|NP_004491.2| heterogeneous nuclear ribonucleoproteins C1/C2 isoform b [Homo
sapiens].
Length = 293
Score = 177 bits (449), Expect = 2e-44
Identities = 106/210 (50%), Positives = 129/210 (61%), Gaps = 18/210 (8%)
Frame = +3
Query: 579 SNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFVQYANERH 758
SNVTNK DP+S+NSRVFIGNLNT VVKKSDVE IFSKYG++ GCSVHKG+AFVQY NER+
Sbjct: 3 SNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERN 62
Query: 759 ARAAVLGENGRVLAGQTLDINMAGEPKPNRPK-GLKRTASAIY----------------R 887
ARAAV GE+GR++AGQ LDIN+A EPK NR K G+KR+A+ +Y R
Sbjct: 63 ARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYYDR 122
Query: 888 LFDYRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIPVKLFARSTAITTGSAKI-KLKSS 1064
++ Y K S + GS+K KLK
Sbjct: 123 MYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRG----KSGFNSKSGQRGSSKSGKLKGD 178
Query: 1065 ELQAIKTELTQIKSNIDALLGRLEQIAEEQ 1154
+LQAIK ELTQIK +D+LL LE+I +EQ
Sbjct: 179 DLQAIKKELTQIKQKVDSLLENLEKIEKEQ 208
>ref|NP_001013653.1| heterogeneous nuclear ribonucleoprotein C-like 1 [Homo sapiens].
Length = 293
Score = 166 bits (420), Expect = 4e-41
Identities = 104/206 (50%), Positives = 126/206 (61%), Gaps = 14/206 (6%)
Frame = +3
Query: 579 SNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFVQYANERH 758
SNVTNK DP S+NSRVFIGNLNT VVKKSDVE IFSKYG++AGCSVHKG+AFVQY E++
Sbjct: 3 SNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKN 62
Query: 759 ARAAVLGENGRVLAGQTLDINMAGEPKPNRPK-GLKRTASAIY-RLFD---------YRG 905
ARAAV GE+GR++A Q +DIN+A EPK NR G+KR+A+ +Y FD Y G
Sbjct: 63 ARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYGFQRDYYDG 122
Query: 906 XXXXXXXXXXXXXXXXXXXXXXXXXXXXTIP--VKLFARSTAITTGSAKI-KLKSSELQA 1076
K S + GS+K KLK +LQA
Sbjct: 123 MYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDLQA 182
Query: 1077 IKTELTQIKSNIDALLGRLEQIAEEQ 1154
IK ELTQIK +D+LL LE+I +EQ
Sbjct: 183 IKQELTQIKQKVDSLLENLEKIEKEQ 208
>ref|NP_001139653.1| heterogeneous nuclear ribonucleoprotein C-like [Homo sapiens].
Length = 293
Score = 164 bits (415), Expect = 2e-40
Identities = 102/205 (49%), Positives = 125/205 (60%), Gaps = 14/205 (6%)
Frame = +3
Query: 579 SNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFVQYANERH 758
SNVTNK DP S+NSRVFIGNLNT VVKKSDVE IFSKYG++AGCSVHKG+AFVQY E++
Sbjct: 3 SNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKN 62
Query: 759 ARAAVLGENGRVLAGQTLDINMAGEPKPNRPK-GLKRTASAIYRLF---------DYRG- 905
ARAAV GE+GR++A Q +DIN+A EPK NR G+KR+A+ +Y DY G
Sbjct: 63 ARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYYGG 122
Query: 906 --XXXXXXXXXXXXXXXXXXXXXXXXXXXXTIPVKLFARSTAITTGSAKI-KLKSSELQA 1076
+ K S + GS+K KLK +LQA
Sbjct: 123 MYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDLQA 182
Query: 1077 IKTELTQIKSNIDALLGRLEQIAEE 1151
IK ELTQIK +D+LL LE+I +E
Sbjct: 183 IKQELTQIKQKVDSLLENLEKIEKE 207
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,650,390
Number of extensions: 927353
Number of successful extensions: 4333
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 4298
Number of HSP's successfully gapped: 20
Length of query: 433
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 328
Effective length of database: 14,835,944
Effective search space: 4866189632
Effective search space used: 4866189632
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001774
(1299 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_075619.2| RNA-binding protein Raly short isoform [Mus mus... 338 7e-93
Alignment gi|NP_001132984.1| RNA-binding protein Raly short isoform [Mus ... 338 7e-93
Alignment gi|NP_001132983.1| RNA-binding protein Raly short isoform [Mus ... 338 7e-93
Alignment gi|NP_001132985.1| RNA-binding protein Raly long isoform [Mus m... 327 1e-89
Alignment gi|NP_001156800.1| RNA-binding Raly-like protein isoform a [Mus... 218 6e-57
Alignment gi|NP_848746.1| RNA-binding Raly-like protein isoform a [Mus mu... 218 6e-57
Alignment gi|NP_001164453.1| heterogeneous nuclear ribonucleoproteins C1/... 177 2e-44
Alignment gi|NP_001164452.1| heterogeneous nuclear ribonucleoproteins C1/... 177 2e-44
Alignment gi|NP_001164455.1| heterogeneous nuclear ribonucleoproteins C1/... 177 2e-44
Alignment gi|NP_001164454.1| heterogeneous nuclear ribonucleoproteins C1/... 176 5e-44
>ref|NP_075619.2| RNA-binding protein Raly short isoform [Mus musculus].
Length = 296
Score = 338 bits (866), Expect = 7e-93
Identities = 177/210 (84%), Positives = 180/210 (85%)
Frame = +3
Query: 558 MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFV 737
MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFV
Sbjct: 1 MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFV 60
Query: 738 QYANERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPKGLKRTASAIYRLFDYRGXXXX 917
QYANERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPKGLKR A+AIYRLFDYRG
Sbjct: 61 QYANERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPKGLKRAATAIYRLFDYRGRLSP 120
Query: 918 XXXXXXXXXXXXXXXXXXXXXXXXTIPVKLFARSTAITTGSAKIKLKSSELQAIKTELTQ 1097
TIPVKLFARSTA+TTGSAKIKLKSSELQ IKTELTQ
Sbjct: 121 VPVPRAVPVKRPRVTVPLVRRVKTTIPVKLFARSTAVTTGSAKIKLKSSELQTIKTELTQ 180
Query: 1098 IKSNIDALLGRLEQIAEEQKANPDGKKKGE 1187
IKSNIDALLGRLEQIAEEQKANPDGKKKG+
Sbjct: 181 IKSNIDALLGRLEQIAEEQKANPDGKKKGD 210
>ref|NP_001132984.1| RNA-binding protein Raly short isoform [Mus musculus].
Length = 296
Score = 338 bits (866), Expect = 7e-93
Identities = 177/210 (84%), Positives = 180/210 (85%)
Frame = +3
Query: 558 MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFV 737
MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFV
Sbjct: 1 MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFV 60
Query: 738 QYANERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPKGLKRTASAIYRLFDYRGXXXX 917
QYANERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPKGLKR A+AIYRLFDYRG
Sbjct: 61 QYANERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPKGLKRAATAIYRLFDYRGRLSP 120
Query: 918 XXXXXXXXXXXXXXXXXXXXXXXXTIPVKLFARSTAITTGSAKIKLKSSELQAIKTELTQ 1097
TIPVKLFARSTA+TTGSAKIKLKSSELQ IKTELTQ
Sbjct: 121 VPVPRAVPVKRPRVTVPLVRRVKTTIPVKLFARSTAVTTGSAKIKLKSSELQTIKTELTQ 180
Query: 1098 IKSNIDALLGRLEQIAEEQKANPDGKKKGE 1187
IKSNIDALLGRLEQIAEEQKANPDGKKKG+
Sbjct: 181 IKSNIDALLGRLEQIAEEQKANPDGKKKGD 210
>ref|NP_001132983.1| RNA-binding protein Raly short isoform [Mus musculus].
Length = 296
Score = 338 bits (866), Expect = 7e-93
Identities = 177/210 (84%), Positives = 180/210 (85%)
Frame = +3
Query: 558 MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFV 737
MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFV
Sbjct: 1 MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFV 60
Query: 738 QYANERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPKGLKRTASAIYRLFDYRGXXXX 917
QYANERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPKGLKR A+AIYRLFDYRG
Sbjct: 61 QYANERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPKGLKRAATAIYRLFDYRGRLSP 120
Query: 918 XXXXXXXXXXXXXXXXXXXXXXXXTIPVKLFARSTAITTGSAKIKLKSSELQAIKTELTQ 1097
TIPVKLFARSTA+TTGSAKIKLKSSELQ IKTELTQ
Sbjct: 121 VPVPRAVPVKRPRVTVPLVRRVKTTIPVKLFARSTAVTTGSAKIKLKSSELQTIKTELTQ 180
Query: 1098 IKSNIDALLGRLEQIAEEQKANPDGKKKGE 1187
IKSNIDALLGRLEQIAEEQKANPDGKKKG+
Sbjct: 181 IKSNIDALLGRLEQIAEEQKANPDGKKKGD 210
>ref|NP_001132985.1| RNA-binding protein Raly long isoform [Mus musculus].
Length = 312
Score = 327 bits (839), Expect = 1e-89
Identities = 177/226 (78%), Positives = 180/226 (79%), Gaps = 16/226 (7%)
Frame = +3
Query: 558 MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFV 737
MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFV
Sbjct: 1 MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFV 60
Query: 738 QYANERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPKGLKRTASAIY----------- 884
QYANERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPKGLKR A+AIY
Sbjct: 61 QYANERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPKGLKRAATAIYSGYSFDYDYYQ 120
Query: 885 -----RLFDYRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIPVKLFARSTAITTGSAKI 1049
RLFDYRG TIPVKLFARSTA+TTGSAKI
Sbjct: 121 DYFCARLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTTIPVKLFARSTAVTTGSAKI 180
Query: 1050 KLKSSELQAIKTELTQIKSNIDALLGRLEQIAEEQKANPDGKKKGE 1187
KLKSSELQ IKTELTQIKSNIDALLGRLEQIAEEQKANPDGKKKG+
Sbjct: 181 KLKSSELQTIKTELTQIKSNIDALLGRLEQIAEEQKANPDGKKKGD 226
>ref|NP_001156800.1| RNA-binding Raly-like protein isoform a [Mus musculus].
Length = 293
Score = 218 bits (556), Expect = 6e-57
Identities = 127/236 (53%), Positives = 147/236 (62%), Gaps = 28/236 (11%)
Frame = +3
Query: 558 MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFV 737
M+ K QTSN+TNKNDPKSINSRVFIGNLNTA+VKK D+E IFSKYG++ GCSVHKGYAFV
Sbjct: 1 MTGKTQTSNITNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60
Query: 738 QYANERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPK-GLKRTASAIY---------- 884
QY +ERHARAAV GEN RV+AGQ LDINMAGEPKP RPK G KR SA+Y
Sbjct: 61 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGSKRPLSALYRLESKEPFLS 120
Query: 885 -----------------RLFDYRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIPVKLFA 1013
RLFDY G +K +
Sbjct: 121 VGGYVFDYDYYRDDFYNRLFDYHG-RVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGS 179
Query: 1014 RSTAITTGSAKIKLKSSELQAIKTELTQIKSNIDALLGRLEQIAEEQKANPDGKKK 1181
RST + S+ KLKS ELQ IK ELTQIK+ ID+LLGRLE+I ++QKA + +KK
Sbjct: 180 RSTVGGSSSSGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKK 235
>ref|NP_848746.1| RNA-binding Raly-like protein isoform a [Mus musculus].
Length = 293
Score = 218 bits (556), Expect = 6e-57
Identities = 127/236 (53%), Positives = 147/236 (62%), Gaps = 28/236 (11%)
Frame = +3
Query: 558 MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFV 737
M+ K QTSN+TNKNDPKSINSRVFIGNLNTA+VKK D+E IFSKYG++ GCSVHKGYAFV
Sbjct: 1 MTGKTQTSNITNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60
Query: 738 QYANERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPK-GLKRTASAIY---------- 884
QY +ERHARAAV GEN RV+AGQ LDINMAGEPKP RPK G KR SA+Y
Sbjct: 61 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGSKRPLSALYRLESKEPFLS 120
Query: 885 -----------------RLFDYRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIPVKLFA 1013
RLFDY G +K +
Sbjct: 121 VGGYVFDYDYYRDDFYNRLFDYHG-RVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGS 179
Query: 1014 RSTAITTGSAKIKLKSSELQAIKTELTQIKSNIDALLGRLEQIAEEQKANPDGKKK 1181
RST + S+ KLKS ELQ IK ELTQIK+ ID+LLGRLE+I ++QKA + +KK
Sbjct: 180 RSTVGGSSSSGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKK 235
>ref|NP_001164453.1| heterogeneous nuclear ribonucleoproteins C1/C2 isoform 2 [Mus
musculus].
Length = 300
Score = 177 bits (449), Expect = 2e-44
Identities = 104/214 (48%), Positives = 128/214 (59%), Gaps = 17/214 (7%)
Frame = +3
Query: 579 SNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFVQYANERH 758
SNVTNK DP+S+NSRVFIGNLNT VVKKSDVE IFSKYG++ GCSVHKG+AFVQY NER+
Sbjct: 3 SNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERN 62
Query: 759 ARAAVLGENGRVLAGQTLDINMAGEPKPNRPK-GLKRTASAIY----------------R 887
ARAAV GE+GR++AGQ LDIN+A EPK NR K G+KR+A+ +Y R
Sbjct: 63 ARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYYDR 122
Query: 888 LFDYRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIPVKLFARSTAITTGSAKIKLKSSE 1067
++ Y ++S + S KLK +
Sbjct: 123 MYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFN--SKSGQRGSSSKSGKLKGDD 180
Query: 1068 LQAIKTELTQIKSNIDALLGRLEQIAEEQKANPD 1169
LQAIK ELTQIK +D+LL LE+I +EQ D
Sbjct: 181 LQAIKKELTQIKQKVDSLLESLEKIEKEQSKQAD 214
>ref|NP_001164452.1| heterogeneous nuclear ribonucleoproteins C1/C2 isoform 2 [Mus
musculus].
Length = 300
Score = 177 bits (449), Expect = 2e-44
Identities = 104/214 (48%), Positives = 128/214 (59%), Gaps = 17/214 (7%)
Frame = +3
Query: 579 SNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFVQYANERH 758
SNVTNK DP+S+NSRVFIGNLNT VVKKSDVE IFSKYG++ GCSVHKG+AFVQY NER+
Sbjct: 3 SNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERN 62
Query: 759 ARAAVLGENGRVLAGQTLDINMAGEPKPNRPK-GLKRTASAIY----------------R 887
ARAAV GE+GR++AGQ LDIN+A EPK NR K G+KR+A+ +Y R
Sbjct: 63 ARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYYDR 122
Query: 888 LFDYRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIPVKLFARSTAITTGSAKIKLKSSE 1067
++ Y ++S + S KLK +
Sbjct: 123 MYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFN--SKSGQRGSSSKSGKLKGDD 180
Query: 1068 LQAIKTELTQIKSNIDALLGRLEQIAEEQKANPD 1169
LQAIK ELTQIK +D+LL LE+I +EQ D
Sbjct: 181 LQAIKKELTQIKQKVDSLLESLEKIEKEQSKQAD 214
>ref|NP_001164455.1| heterogeneous nuclear ribonucleoproteins C1/C2 isoform 4 [Mus
musculus].
Length = 292
Score = 177 bits (448), Expect = 2e-44
Identities = 104/218 (47%), Positives = 130/218 (59%), Gaps = 17/218 (7%)
Frame = +3
Query: 579 SNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFVQYANERH 758
SNVTNK DP+S+NSRVFIGNLNT VVKKSDVE IFSKYG++ GCSVHKG+AFVQY NER+
Sbjct: 3 SNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERN 62
Query: 759 ARAAVLGENGRVLAGQTLDINMAGEPKPNRPK-GLKRTASAIY----------------R 887
ARAAV GE+GR++AGQ LDIN+A EPK NR K G+KR+A+ +Y R
Sbjct: 63 ARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYYDR 122
Query: 888 LFDYRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIPVKLFARSTAITTGSAKIKLKSSE 1067
++ Y ++S + S KLK +
Sbjct: 123 MYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFN--SKSGQRGSSSKSGKLKGDD 180
Query: 1068 LQAIKTELTQIKSNIDALLGRLEQIAEEQKANPDGKKK 1181
LQAIK ELTQIK +D+LL LE+I +EQ + K +
Sbjct: 181 LQAIKKELTQIKQKVDSLLESLEKIEKEQSKQAEMKNE 218
>ref|NP_001164454.1| heterogeneous nuclear ribonucleoproteins C1/C2 isoform 3 [Mus
musculus].
Length = 293
Score = 176 bits (445), Expect = 5e-44
Identities = 103/209 (49%), Positives = 127/209 (60%), Gaps = 17/209 (8%)
Frame = +3
Query: 579 SNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFVQYANERH 758
SNVTNK DP+S+NSRVFIGNLNT VVKKSDVE IFSKYG++ GCSVHKG+AFVQY NER+
Sbjct: 3 SNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERN 62
Query: 759 ARAAVLGENGRVLAGQTLDINMAGEPKPNRPK-GLKRTASAIY----------------R 887
ARAAV GE+GR++AGQ LDIN+A EPK NR K G+KR+A+ +Y R
Sbjct: 63 ARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYYDR 122
Query: 888 LFDYRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIPVKLFARSTAITTGSAKIKLKSSE 1067
++ Y ++S + S KLK +
Sbjct: 123 MYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFN--SKSGQRGSSSKSGKLKGDD 180
Query: 1068 LQAIKTELTQIKSNIDALLGRLEQIAEEQ 1154
LQAIK ELTQIK +D+LL LE+I +EQ
Sbjct: 181 LQAIKKELTQIKQKVDSLLESLEKIEKEQ 209
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,891,359
Number of extensions: 782236
Number of successful extensions: 3714
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 3644
Number of HSP's successfully gapped: 17
Length of query: 433
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 329
Effective length of database: 12,493,815
Effective search space: 4110465135
Effective search space used: 4110465135
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001774
(1299 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134451.1| PREDICTED: RNA-binding protein Raly isoform ... 344 7e-95
Alignment gi|XP_003134445.2| PREDICTED: RNA-binding protein Raly-like iso... 333 1e-91
Alignment gi|XP_003359995.1| PREDICTED: RNA-binding protein Raly [Sus scr... 333 1e-91
Alignment gi|XP_001929139.2| PREDICTED: RNA-binding protein Raly isoform ... 333 1e-91
Alignment gi|NP_001230623.1| heterogeneous nuclear ribonucleoprotein C (C... 176 3e-44
Alignment gi|NP_001230622.1| heterogeneous nuclear ribonucleoprotein C (C... 159 4e-39
Alignment gi|XP_003125632.1| PREDICTED: RNA-binding Raly-like protein-lik... 146 3e-35
Alignment gi|NP_001070685.1| serine/arginine-rich splicing factor 6 [Sus ... 51 2e-06
Alignment gi|XP_003360793.1| PREDICTED: serine/arginine-rich splicing fac... 49 8e-06
Alignment gi|XP_001927469.2| PREDICTED: serine/arginine-rich splicing fac... 49 8e-06
>ref|XP_003134451.1| PREDICTED: RNA-binding protein Raly isoform 2 [Sus scrofa].
Length = 311
Score = 344 bits (882), Expect = 7e-95
Identities = 182/210 (86%), Positives = 182/210 (86%)
Frame = +3
Query: 558 MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFV 737
MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFV
Sbjct: 1 MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFV 60
Query: 738 QYANERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPKGLKRTASAIYRLFDYRGXXXX 917
QYANERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPKGLKRTASAIYRLFDYRG
Sbjct: 61 QYANERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPKGLKRTASAIYRLFDYRGRLSP 120
Query: 918 XXXXXXXXXXXXXXXXXXXXXXXXTIPVKLFARSTAITTGSAKIKLKSSELQAIKTELTQ 1097
TIPVKLFARSTAITTGSAKIKLKSSELQAIKTELTQ
Sbjct: 121 VPVPRAVPVKRPRVTVPLVRRVKTTIPVKLFARSTAITTGSAKIKLKSSELQAIKTELTQ 180
Query: 1098 IKSNIDALLGRLEQIAEEQKANPDGKKKGE 1187
IKSNIDALLGRLEQIAEEQKANPDGKKKGE
Sbjct: 181 IKSNIDALLGRLEQIAEEQKANPDGKKKGE 210
>ref|XP_003134445.2| PREDICTED: RNA-binding protein Raly-like isoform 1 [Sus scrofa].
Length = 327
Score = 333 bits (855), Expect = 1e-91
Identities = 182/226 (80%), Positives = 182/226 (80%), Gaps = 16/226 (7%)
Frame = +3
Query: 558 MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFV 737
MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFV
Sbjct: 1 MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFV 60
Query: 738 QYANERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPKGLKRTASAIY----------- 884
QYANERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPKGLKRTASAIY
Sbjct: 61 QYANERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPKGLKRTASAIYSGYSFDYDYYR 120
Query: 885 -----RLFDYRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIPVKLFARSTAITTGSAKI 1049
RLFDYRG TIPVKLFARSTAITTGSAKI
Sbjct: 121 DDFYDRLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTTIPVKLFARSTAITTGSAKI 180
Query: 1050 KLKSSELQAIKTELTQIKSNIDALLGRLEQIAEEQKANPDGKKKGE 1187
KLKSSELQAIKTELTQIKSNIDALLGRLEQIAEEQKANPDGKKKGE
Sbjct: 181 KLKSSELQAIKTELTQIKSNIDALLGRLEQIAEEQKANPDGKKKGE 226
>ref|XP_003359995.1| PREDICTED: RNA-binding protein Raly [Sus scrofa].
Length = 327
Score = 333 bits (855), Expect = 1e-91
Identities = 182/226 (80%), Positives = 182/226 (80%), Gaps = 16/226 (7%)
Frame = +3
Query: 558 MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFV 737
MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFV
Sbjct: 1 MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFV 60
Query: 738 QYANERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPKGLKRTASAIY----------- 884
QYANERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPKGLKRTASAIY
Sbjct: 61 QYANERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPKGLKRTASAIYSGYSFDYDYYR 120
Query: 885 -----RLFDYRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIPVKLFARSTAITTGSAKI 1049
RLFDYRG TIPVKLFARSTAITTGSAKI
Sbjct: 121 DDFYDRLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTTIPVKLFARSTAITTGSAKI 180
Query: 1050 KLKSSELQAIKTELTQIKSNIDALLGRLEQIAEEQKANPDGKKKGE 1187
KLKSSELQAIKTELTQIKSNIDALLGRLEQIAEEQKANPDGKKKGE
Sbjct: 181 KLKSSELQAIKTELTQIKSNIDALLGRLEQIAEEQKANPDGKKKGE 226
>ref|XP_001929139.2| PREDICTED: RNA-binding protein Raly isoform 1 [Sus scrofa].
Length = 327
Score = 333 bits (855), Expect = 1e-91
Identities = 182/226 (80%), Positives = 182/226 (80%), Gaps = 16/226 (7%)
Frame = +3
Query: 558 MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFV 737
MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFV
Sbjct: 1 MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFV 60
Query: 738 QYANERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPKGLKRTASAIY----------- 884
QYANERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPKGLKRTASAIY
Sbjct: 61 QYANERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPKGLKRTASAIYSGYSFDYDYYR 120
Query: 885 -----RLFDYRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIPVKLFARSTAITTGSAKI 1049
RLFDYRG TIPVKLFARSTAITTGSAKI
Sbjct: 121 DDFYDRLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTTIPVKLFARSTAITTGSAKI 180
Query: 1050 KLKSSELQAIKTELTQIKSNIDALLGRLEQIAEEQKANPDGKKKGE 1187
KLKSSELQAIKTELTQIKSNIDALLGRLEQIAEEQKANPDGKKKGE
Sbjct: 181 KLKSSELQAIKTELTQIKSNIDALLGRLEQIAEEQKANPDGKKKGE 226
>ref|NP_001230623.1| heterogeneous nuclear ribonucleoprotein C (C1/C2) 2 [Sus scrofa].
Length = 294
Score = 176 bits (445), Expect = 3e-44
Identities = 103/209 (49%), Positives = 127/209 (60%), Gaps = 17/209 (8%)
Frame = +3
Query: 579 SNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFVQYANERH 758
SNVTNK DP+S+NSRVFIGNLNT VVKKSDVE IFSKYG++ GCSVHKG+AFVQY NER+
Sbjct: 3 SNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERN 62
Query: 759 ARAAVLGENGRVLAGQTLDINMAGEPKPNRPK-GLKRTASAIY----------------R 887
ARAAV GE+GR++AGQ LDIN+A EPK NR K G+KR+A+ +Y R
Sbjct: 63 ARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYYDR 122
Query: 888 LFDYRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIPVKLFARSTAITTGSAKIKLKSSE 1067
++ Y ++S + S KLK +
Sbjct: 123 MYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFN--SKSGQRGSSSKSGKLKGDD 180
Query: 1068 LQAIKTELTQIKSNIDALLGRLEQIAEEQ 1154
LQAIK ELTQIK +D+LL LE+I +EQ
Sbjct: 181 LQAIKKELTQIKQKVDSLLESLEKIEKEQ 209
>ref|NP_001230622.1| heterogeneous nuclear ribonucleoprotein C (C1/C2) 1 [Sus scrofa].
Length = 313
Score = 159 bits (401), Expect = 4e-39
Identities = 77/103 (74%), Positives = 91/103 (88%), Gaps = 1/103 (0%)
Frame = +3
Query: 579 SNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFVQYANERH 758
SNVTNK DP+S+NSRVFIGNLNT VVKKSDVE IFSKYG++ GCSVHKG+AFVQY NER+
Sbjct: 3 SNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERN 62
Query: 759 ARAAVLGENGRVLAGQTLDINMAGEPKPNRPK-GLKRTASAIY 884
ARAAV GE+GR++AGQ LDIN+A EPK NR K G+KR+A+ +Y
Sbjct: 63 ARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMY 105
>ref|XP_003125632.1| PREDICTED: RNA-binding Raly-like protein-like [Sus scrofa].
Length = 88
Score = 146 bits (368), Expect = 3e-35
Identities = 69/86 (80%), Positives = 77/86 (89%)
Frame = +3
Query: 558 MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFV 737
M+ K QTSNVTNKNDPKSINSRVFIGNLNTA+VKK D+E IFSKYG++ GCSVHKGYAFV
Sbjct: 1 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60
Query: 738 QYANERHARAAVLGENGRVLAGQTLD 815
QY +ERHARAAV GEN R++AGQ LD
Sbjct: 61 QYMSERHARAAVAGENARIIAGQPLD 86
>ref|NP_001070685.1| serine/arginine-rich splicing factor 6 [Sus scrofa].
Length = 345
Score = 50.8 bits (120), Expect = 2e-06
Identities = 28/76 (36%), Positives = 44/76 (57%)
Frame = +3
Query: 621 RVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFVQYANERHARAAVLGENGRVLA 800
RV+IG L+ V +K D++ FS YGR+ + GY FV++ + R A AV NG+ L
Sbjct: 3 RVYIGRLSYNVREK-DIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELC 61
Query: 801 GQTLDINMAGEPKPNR 848
G+ + + A P+ +R
Sbjct: 62 GERVIVEHARGPRRDR 77
>ref|XP_003360793.1| PREDICTED: serine/arginine-rich splicing factor 5-like [Sus
scrofa].
Length = 221
Score = 48.5 bits (114), Expect = 8e-06
Identities = 27/69 (39%), Positives = 39/69 (56%)
Frame = +3
Query: 621 RVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFVQYANERHARAAVLGENGRVLA 800
RVFIG LN A +K DVE F YGR+ + +G+ FV++ + R A AV +G+ L
Sbjct: 5 RVFIGRLNPAAREK-DVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELC 63
Query: 801 GQTLDINMA 827
+ + I A
Sbjct: 64 SERVTIEHA 72
>ref|XP_001927469.2| PREDICTED: serine/arginine-rich splicing factor 5 isoform 2 [Sus
scrofa].
Length = 272
Score = 48.5 bits (114), Expect = 8e-06
Identities = 27/69 (39%), Positives = 39/69 (56%)
Frame = +3
Query: 621 RVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFVQYANERHARAAVLGENGRVLA 800
RVFIG LN A +K DVE F YGR+ + +G+ FV++ + R A AV +G+ L
Sbjct: 5 RVFIGRLNPAAREK-DVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELC 63
Query: 801 GQTLDINMA 827
+ + I A
Sbjct: 64 SERVTIEHA 72
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,090,895
Number of extensions: 821627
Number of successful extensions: 2921
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 2891
Number of HSP's successfully gapped: 11
Length of query: 433
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 331
Effective length of database: 8,804,438
Effective search space: 2914268978
Effective search space used: 2914268978
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001774
(1299 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 527 e-147
Sscrofa_Chr01 80 3e-12
Sscrofa_Chr04 68 1e-08
>Sscrofa_Chr17
|| Length = 69701581
Score = 527 bits (266), Expect = e-147
Identities = 266/266 (100%)
Strand = Plus / Minus
Query: 548 ggtggctaccatgtccttaaagatccagacaagcaacgtaaccaacaagaatgaccccaa 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42879590 ggtggctaccatgtccttaaagatccagacaagcaacgtaaccaacaagaatgaccccaa 42879531
Query: 608 gtctatcaactctagggtcttcattggaaacctcaacacagccgtggtgaagaaatctga 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42879530 gtctatcaactctagggtcttcattggaaacctcaacacagccgtggtgaagaaatctga 42879471
Query: 668 tgtggagactatcttctccaagtatggccgtgtggccggctgttctgtgcacaagggcta 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42879470 tgtggagactatcttctccaagtatggccgtgtggccggctgttctgtgcacaagggcta 42879411
Query: 728 tgcctttgtgcagtatgccaacgagcgccatgcccgggcagctgtgctgggagagaatgg 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42879410 tgcctttgtgcagtatgccaacgagcgccatgcccgggcagctgtgctgggagagaatgg 42879351
Query: 788 gcgagtgctggccgggcagaccctgg 813
||||||||||||||||||||||||||
Sbjct: 42879350 gcgagtgctggccgggcagaccctgg 42879325
Score = 434 bits (219), Expect = e-119
Identities = 219/219 (100%)
Strand = Plus / Minus
Query: 8 aagctagactggagaggtgggacgagcccttgcgcgtggggggccgggctgtgtcagggc 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42965765 aagctagactggagaggtgggacgagcccttgcgcgtggggggccgggctgtgtcagggc 42965706
Query: 68 gacgctacggactcctcgcgcttgagtcgccgtgccctttggagacagaggcgggggaag 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42965705 gacgctacggactcctcgcgcttgagtcgccgtgccctttggagacagaggcgggggaag 42965646
Query: 128 agggcgactgggccacggccggagcggcgggcggcgcggagcccgctccgtgctccccta 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42965645 agggcgactgggccacggccggagcggcgggcggcgcggagcccgctccgtgctccccta 42965586
Query: 188 cccccgcgcgcctcagtggtgctggccgagggaaggact 226
|||||||||||||||||||||||||||||||||||||||
Sbjct: 42965585 cccccgcgcgcctcagtggtgctggccgagggaaggact 42965547
Score = 347 bits (175), Expect = 9e-93
Identities = 175/175 (100%)
Strand = Plus / Minus
Query: 296 gagcagagagaagctgagggggcggtagcggcagcggcgattcgcgtgcctgtgctcagc 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42965477 gagcagagagaagctgagggggcggtagcggcagcggcgattcgcgtgcctgtgctcagc 42965418
Query: 356 tcctcacgccgcggccggggccgccttctccctccttccttcccgcccccgagtgcggcg 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42965417 tcctcacgccgcggccggggccgccttctccctccttccttcccgcccccgagtgcggcg 42965358
Query: 416 gtaccgcctccttcagcgccgcgcggcttcctccagacctccgtgcgcgggtgag 470
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42965357 gtaccgcctccttcagcgccgcgcggcttcctccagacctccgtgcgcgggtgag 42965303
Score = 339 bits (171), Expect = 2e-90
Identities = 171/171 (100%)
Strand = Plus / Minus
Query: 883 acaggctcttcgactatcggggccgcctgtcaccagtgccagtgcccagggcggtccctg 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42875295 acaggctcttcgactatcggggccgcctgtcaccagtgccagtgcccagggcggtccctg 42875236
Query: 943 tgaagcgaccccgggtcacagtccccttggtccggcgtgtcaaaaccaccatacctgtca 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42875235 tgaagcgaccccgggtcacagtccccttggtccggcgtgtcaaaaccaccatacctgtca 42875176
Query: 1003 agctctttgcccgctccacagctatcaccaccggctcagccaagatcaagt 1053
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42875175 agctctttgcccgctccacagctatcaccaccggctcagccaagatcaagt 42875125
Score = 210 bits (106), Expect = 1e-51
Identities = 112/114 (98%)
Strand = Plus / Minus
Query: 1054 taaagagcagtgaactgcaggccatcaagacagagctgacccagatcaagtccaacatcg 1113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42874407 taaagagcagtgaactgcaggccatcaagacagagctgacccagatcaagtccaacatcg 42874348
Query: 1114 atgccctgctgggtcgcttggagcaaattgctgaggagcaaaaagccaatccag 1167
||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 42874347 atgccctgctgggtcgcttggagcagattgctgaggagcagaaagccaatccag 42874294
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 465 ggtgagctctgttctcagaggcatttggtgctgatcctgtaacccaaaagaggaaattgc 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42925743 ggtgagctctgttctcagaggcatttggtgctgatcctgtaacccaaaagaggaaattgc 42925684
Query: 525 tgcctgagatcagccttggtactggt 550
||||||||||||||||||||||||||
Sbjct: 42925683 tgcctgagatcagccttggtactggt 42925658
Score = 149 bits (75), Expect = 4e-33
Identities = 75/75 (100%)
Strand = Plus / Minus
Query: 813 gacatcaacatggctggagagcccaagcccaacagacccaaggggctaaaaagaacagca 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42877894 gacatcaacatggctggagagcccaagcccaacagacccaaggggctaaaaagaacagca 42877835
Query: 873 tctgccatatacagg 887
|||||||||||||||
Sbjct: 42877834 tctgccatatacagg 42877820
>Sscrofa_Chr01
|| Length = 315321322
Score = 79.8 bits (40), Expect = 3e-12
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 478 ctcagaggcatttggtgctgatcctgtaacccaaaagaggaaattgctgcctgagatcag 537
|||||||||| ||||| |||||||||||||| |||| |||||||||||| ||||| ||||
Sbjct: 218275488 ctcagaggcagttggtactgatcctgtaaccaaaaataggaaattgctggctgagctcag 218275547
Query: 538 cctt 541
||||
Sbjct: 218275548 cctt 218275551
>Sscrofa_Chr04
|| Length = 143465943
Score = 67.9 bits (34), Expect = 1e-08
Identities = 67/78 (85%)
Strand = Plus / Minus
Query: 573 cagacaagcaacgtaaccaacaagaatgaccccaagtctatcaactctagggtcttcatt 632
||||| ||||| || ||||| ||||||||||||||||| ||||||||| | || ||||||
Sbjct: 57539553 cagaccagcaatgtcaccaataagaatgaccccaagtccatcaactctcgagttttcatt 57539494
Query: 633 ggaaacctcaacacagcc 650
||||| || || ||||||
Sbjct: 57539493 ggaaatctaaatacagcc 57539476
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,830,672
Number of extensions: 269
Number of successful extensions: 269
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 269
Number of HSP's successfully gapped: 9
Length of query: 1299
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1278
Effective length of database: 2,808,413,156
Effective search space: 3589152013368
Effective search space used: 3589152013368
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)