Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001775
(1027 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001073109.1| PRKR-interacting protein 1 [Bos taurus]. 209 2e-54
>ref|NP_001073109.1| PRKR-interacting protein 1 [Bos taurus].
Length = 186
Score = 209 bits (533), Expect = 2e-54
Identities = 101/104 (97%), Positives = 103/104 (99%)
Frame = +2
Query: 92 KKEPQTLVIPKNAAEEQKLKLERLMKNPDKAVPIPEKMSEWAPRPPPEFVRDVMGSSAGA 271
KKEPQ L+IPKNAAEEQKLKLERLMKNPDKAVPIPEKMSEWAPRPPPEFVRDVMGSSAGA
Sbjct: 15 KKEPQALIIPKNAAEEQKLKLERLMKNPDKAVPIPEKMSEWAPRPPPEFVRDVMGSSAGA 74
Query: 272 GSGEFHVYRHLRRREYQRQDYMDAMAEKQKLDAEFQKRLERNKI 403
GSGEFHVYRHLRRREYQRQDYMDAMAEKQKL+AEFQKRLERNKI
Sbjct: 75 GSGEFHVYRHLRRREYQRQDYMDAMAEKQKLEAEFQKRLERNKI 118
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,657,051
Number of extensions: 1002558
Number of successful extensions: 5072
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5059
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 239
Effective length of database: 14,273,310
Effective search space: 3411321090
Effective search space used: 3411321090
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001775
(1027 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850116.1| PREDICTED: similar to PRKR interacting protein ... 211 7e-55
>ref|XP_850116.1| PREDICTED: similar to PRKR interacting protein 1 (IL11 inducible)
[Canis familiaris].
Length = 235
Score = 211 bits (538), Expect = 7e-55
Identities = 103/104 (99%), Positives = 103/104 (99%)
Frame = +2
Query: 92 KKEPQTLVIPKNAAEEQKLKLERLMKNPDKAVPIPEKMSEWAPRPPPEFVRDVMGSSAGA 271
KKEPQ LVIPKNAAEEQKLKLERLMKNPDKAVPIPEKMSEWAPRPPPEFVRDVMGSSAGA
Sbjct: 64 KKEPQALVIPKNAAEEQKLKLERLMKNPDKAVPIPEKMSEWAPRPPPEFVRDVMGSSAGA 123
Query: 272 GSGEFHVYRHLRRREYQRQDYMDAMAEKQKLDAEFQKRLERNKI 403
GSGEFHVYRHLRRREYQRQDYMDAMAEKQKLDAEFQKRLERNKI
Sbjct: 124 GSGEFHVYRHLRRREYQRQDYMDAMAEKQKLDAEFQKRLERNKI 167
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,220,461
Number of extensions: 1035599
Number of successful extensions: 5111
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5103
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 239
Effective length of database: 15,440,896
Effective search space: 3690374144
Effective search space used: 3690374144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001775
(1027 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_078929.1| PRKR-interacting protein 1 [Homo sapiens]. 212 4e-55
>ref|NP_078929.1| PRKR-interacting protein 1 [Homo sapiens].
Length = 184
Score = 212 bits (540), Expect = 4e-55
Identities = 103/104 (99%), Positives = 104/104 (100%)
Frame = +2
Query: 92 KKEPQTLVIPKNAAEEQKLKLERLMKNPDKAVPIPEKMSEWAPRPPPEFVRDVMGSSAGA 271
KKEPQTLVIPKNAAEEQKLKLERLMKNPDKAVPIPEKMSEWAPRPPPEFVRDVMGSSAGA
Sbjct: 15 KKEPQTLVIPKNAAEEQKLKLERLMKNPDKAVPIPEKMSEWAPRPPPEFVRDVMGSSAGA 74
Query: 272 GSGEFHVYRHLRRREYQRQDYMDAMAEKQKLDAEFQKRLERNKI 403
GSGEFHVYRHLRRREYQRQDYMDAMAEKQKLDAEFQKRLE+NKI
Sbjct: 75 GSGEFHVYRHLRRREYQRQDYMDAMAEKQKLDAEFQKRLEKNKI 118
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,363,022
Number of extensions: 1006942
Number of successful extensions: 4704
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4697
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 239
Effective length of database: 14,901,872
Effective search space: 3561547408
Effective search space used: 3561547408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001775
(1027 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080050.1| PRKR-interacting protein 1 [Mus musculus]. 208 6e-54
>ref|NP_080050.1| PRKR-interacting protein 1 [Mus musculus].
Length = 186
Score = 208 bits (529), Expect = 6e-54
Identities = 101/104 (97%), Positives = 103/104 (99%)
Frame = +2
Query: 92 KKEPQTLVIPKNAAEEQKLKLERLMKNPDKAVPIPEKMSEWAPRPPPEFVRDVMGSSAGA 271
KKEPQTLVIPKNAAEEQKLKLERLMKNPDKAVPIPEKM+EWAPR PPEFVRDVMGSSAGA
Sbjct: 15 KKEPQTLVIPKNAAEEQKLKLERLMKNPDKAVPIPEKMNEWAPRAPPEFVRDVMGSSAGA 74
Query: 272 GSGEFHVYRHLRRREYQRQDYMDAMAEKQKLDAEFQKRLERNKI 403
GSGEFHVYRHLRRREYQRQDYMDAMAEKQKLDAEFQKRLE+NKI
Sbjct: 75 GSGEFHVYRHLRRREYQRQDYMDAMAEKQKLDAEFQKRLEKNKI 118
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,587,696
Number of extensions: 830619
Number of successful extensions: 4010
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4002
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 240
Effective length of database: 12,553,887
Effective search space: 3012932880
Effective search space used: 3012932880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001775
(1027 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003124432.2| PREDICTED: PRKR-interacting protein 1-like [... 212 3e-55
>ref|XP_003124432.2| PREDICTED: PRKR-interacting protein 1-like [Sus scrofa].
Length = 162
Score = 212 bits (539), Expect = 3e-55
Identities = 103/104 (99%), Positives = 104/104 (100%)
Frame = +2
Query: 92 KKEPQTLVIPKNAAEEQKLKLERLMKNPDKAVPIPEKMSEWAPRPPPEFVRDVMGSSAGA 271
KKEPQTLVIPKNAAEEQKLKLERLMKNPDKAVPIPEK+SEWAPRPPPEFVRDVMGSSAGA
Sbjct: 15 KKEPQTLVIPKNAAEEQKLKLERLMKNPDKAVPIPEKVSEWAPRPPPEFVRDVMGSSAGA 74
Query: 272 GSGEFHVYRHLRRREYQRQDYMDAMAEKQKLDAEFQKRLERNKI 403
GSGEFHVYRHLRRREYQRQDYMDAMAEKQKLDAEFQKRLERNKI
Sbjct: 75 GSGEFHVYRHLRRREYQRQDYMDAMAEKQKLDAEFQKRLERNKI 118
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,051,656
Number of extensions: 650153
Number of successful extensions: 3161
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3149
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 242
Effective length of database: 8,854,232
Effective search space: 2142724144
Effective search space used: 2142724144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001775
(1027 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 886 0.0
>Sscrofa_Chr03
|| Length = 144787322
Score = 886 bits (447), Expect = 0.0
Identities = 496/518 (95%)
Strand = Plus / Plus
Query: 510 gatccagtcagtcccaggagcagctgtccagtagctcagaggaggcatctggaacnnnnn 569
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9547563 gatccagtcagtcccaggagcagctgtccagtagctcagaggaggcatctggaacggagg 9547622
Query: 570 nnnnnnnnnnnncggcagcggccgagcccagcttcatcatggggcgatgaggatgttgtc 629
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9547623 aggaggaggaggcggcagcggccgagcccagcttcatcatggggcgatgaggatgttgtc 9547682
Query: 630 tgcagcagctgttgaggcctgtgaccaggacctcagaaaatcatcctccacgggccccga 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9547683 tgcagcagctgttgaggcctgtgaccaggacctcagaaaatcatcctccacgggccccga 9547742
Query: 690 ggggaagggagcctctgtttgcagctcactttccctcccaaagccgtgcttgcagaagca 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9547743 ggggaagggagcctctgtttgcagctcactttccctcccaaagccgtgcttgcagaagca 9547802
Query: 750 agtaggcccccacccccagggctcgtcgtcccctgtccgcaggactcggcaggactcggc 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9547803 agtaggcccccacccccagggctcgtcgtcccctgtccgcaggactcggcaggactcggc 9547862
Query: 810 ccggcccgtgggagagaggactgtctcctgacactgccaagggcccggccggggtcacag 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9547863 ccggcccgtgggagagaggactgtctcctgacactgccaagggcccggccggggtcacag 9547922
Query: 870 acgtttccgctaaaggggaagctgtcttgcctgttcctccagtgcctgttctcatgtaac 929
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 9547923 acgtttccgctaaaggggaagctgtcttgcctgttcttccagtgcctgttctcatgtaac 9547982
Query: 930 tgaacagtgatgagtttggggctggtttctgtgaaaagaatggtttagtaaaaaacagaa 989
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 9547983 tgaacagtgatgagtttggggctggtttctgtgaaaggaatgttttagtaaaaaacagaa 9548042
Query: 990 aaacttcaggtttttgtgagacctgtgaaatgctgatg 1027
|||||||||||||| ||||||||||||||||||||||
Sbjct: 9548043 aaacttcaggttttgttgagacctgtgaaatgctgatg 9548080
Score = 349 bits (176), Expect = 2e-93
Identities = 176/176 (100%)
Strand = Plus / Plus
Query: 1 tacgcgcgccgccgcttccgcccctccacagggaggctggagagtagtcatggcgagttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9518708 tacgcgcgccgccgcttccgcccctccacagggaggctggagagtagtcatggcgagttc 9518767
Query: 61 agctgcctcctcggtgcgaccgcccaggcccaagaaagagccgcagacgctcgtcatccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9518768 agctgcctcctcggtgcgaccgcccaggcccaagaaagagccgcagacgctcgtcatccc 9518827
Query: 121 caagaatgcggcggaggagcagaagctcaagctggaacggctcatgaagaacccgg 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9518828 caagaatgcggcggaggagcagaagctcaagctggaacggctcatgaagaacccgg 9518883
Score = 202 bits (102), Expect = 3e-49
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 254 ggttcaagtgctggggccggcagcggagagttccatgtgtacaggcatctgcgccggaga 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9520791 ggttcaagtgctggggccggcagcggagagttccatgtgtacaggcatctgcgccggaga 9520850
Query: 314 gagtaccagcggcaggactacatggatgccatggctgagaag 355
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9520851 gagtaccagcggcaggactacatggatgccatggctgagaag 9520892
Score = 174 bits (88), Expect = 6e-41
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 354 agcaaaaactggatgcagagtttcagaaaagactggaaaggaataagattgctgcagagg 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9525321 agcaaaaactggatgcagagtttcagaaaagactggaaaggaataagattgctgcagagg 9525380
Query: 414 agcagactgcaaagcgccggaaaaagcg 441
||||||||||||||||||||||||||||
Sbjct: 9525381 agcagactgcaaagcgccggaaaaagcg 9525408
Score = 155 bits (78), Expect = 6e-35
Identities = 81/82 (98%)
Strand = Plus / Plus
Query: 175 ggacaaagcagttccaattccagaaaaaatgagtgaatgggcacctcgacctcccccgga 234
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 9519559 ggacaaagcagttccaattccagaaaaagtgagtgaatgggcacctcgacctcccccgga 9519618
Query: 235 atttgtccgagatgtaatgggt 256
||||||||||||||||||||||
Sbjct: 9519619 atttgtccgagatgtaatgggt 9519640
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,635,365
Number of extensions: 238
Number of successful extensions: 238
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 6
Length of query: 1027
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1006
Effective length of database: 2,808,413,156
Effective search space: 2825263634936
Effective search space used: 2825263634936
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)