Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001788
(1926 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001179905.1| protein TFG [Bos taurus]. 448 e-126
Alignment gi|XP_002684764.1| PREDICTED: TRK-fused gene [Bos taurus]. 446 e-125
>ref|NP_001179905.1| protein TFG [Bos taurus].
Length = 401
Score = 448 bits (1153), Expect = e-126
Identities = 227/241 (94%), Positives = 230/241 (95%)
Frame = +2
Query: 296 MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD 475
MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD
Sbjct: 1 MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD 60
Query: 476 EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL 655
EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL
Sbjct: 61 EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL 120
Query: 656 DSLEPPGEPGPSTNITENDTVDGREEKPAASDSSGKQSTQVMAASMSAFDPLKNQDEINK 835
DSLEPPGEPGPS++I ENDTVDGREEKPAA+DSSGKQSTQVMAASMSAFDPLKNQDEINK
Sbjct: 121 DSLEPPGEPGPSSSIPENDTVDGREEKPAAADSSGKQSTQVMAASMSAFDPLKNQDEINK 180
Query: 836 NVMSAFGLTDDQVSGPPSAPAEDRSGTPDXXXXXXXXXHPPGVQPQQPPYTGALTQAGQS 1015
NVMSAFGLTDDQVSGPPSAPAEDRSGTPD HPPGVQPQQPPYTGA TQAGQS
Sbjct: 181 NVMSAFGLTDDQVSGPPSAPAEDRSGTPDSIASSSSAAHPPGVQPQQPPYTGAQTQAGQS 240
Query: 1016 E 1018
E
Sbjct: 241 E 241
Score = 135 bits (339), Expect = 2e-31
Identities = 67/102 (65%), Positives = 67/102 (65%)
Frame = +2
Query: 1190 APAPAFSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAPASQPGMAPSQPGAYQ 1369
APAPAFSG VAPASQPGMAPSQPGAYQ
Sbjct: 300 APAPAFSGQPQQLPAQPPQQYQASSYPQQTYTTQTSQPTNYTVAPASQPGMAPSQPGAYQ 359
Query: 1370 PRPGFTPPPGSTMTPLPSGSNPYARSRPPFGQGYTQPGPGYR 1495
PRPGFTPPPGSTMTPL SGSNPYARSRPPFGQGYTQPGPGYR
Sbjct: 360 PRPGFTPPPGSTMTPLASGSNPYARSRPPFGQGYTQPGPGYR 401
>ref|XP_002684764.1| PREDICTED: TRK-fused gene [Bos taurus].
Length = 401
Score = 446 bits (1148), Expect = e-125
Identities = 226/241 (93%), Positives = 229/241 (95%)
Frame = +2
Query: 296 MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD 475
MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD
Sbjct: 1 MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD 60
Query: 476 EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL 655
EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL
Sbjct: 61 EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL 120
Query: 656 DSLEPPGEPGPSTNITENDTVDGREEKPAASDSSGKQSTQVMAASMSAFDPLKNQDEINK 835
DSLEPPGEPGPS++I ENDTVDGREEKPAA+DSSGKQSTQVMAASMSAFDP KNQDEINK
Sbjct: 121 DSLEPPGEPGPSSSIPENDTVDGREEKPAAADSSGKQSTQVMAASMSAFDPXKNQDEINK 180
Query: 836 NVMSAFGLTDDQVSGPPSAPAEDRSGTPDXXXXXXXXXHPPGVQPQQPPYTGALTQAGQS 1015
NVMSAFGLTDDQVSGPPSAPAEDRSGTPD HPPGVQPQQPPYTGA TQAGQS
Sbjct: 181 NVMSAFGLTDDQVSGPPSAPAEDRSGTPDSIASSSSAAHPPGVQPQQPPYTGAQTQAGQS 240
Query: 1016 E 1018
E
Sbjct: 241 E 241
Score = 135 bits (339), Expect = 2e-31
Identities = 67/102 (65%), Positives = 67/102 (65%)
Frame = +2
Query: 1190 APAPAFSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAPASQPGMAPSQPGAYQ 1369
APAPAFSG VAPASQPGMAPSQPGAYQ
Sbjct: 300 APAPAFSGQPQQLPAQPPQQYQASSYPQQTYTTQTSQPTNYTVAPASQPGMAPSQPGAYQ 359
Query: 1370 PRPGFTPPPGSTMTPLPSGSNPYARSRPPFGQGYTQPGPGYR 1495
PRPGFTPPPGSTMTPL SGSNPYARSRPPFGQGYTQPGPGYR
Sbjct: 360 PRPGFTPPPGSTMTPLASGSNPYARSRPPFGQGYTQPGPGYR 401
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 64,331,493
Number of extensions: 1754245
Number of successful extensions: 10069
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 9684
Number of HSP's successfully gapped: 4
Length of query: 642
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 533
Effective length of database: 14,074,782
Effective search space: 7501858806
Effective search space used: 7501858806
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001788
(1926 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_545076.1| PREDICTED: similar to TRK-fused gene isoform 1 ... 447 e-125
Alignment gi|XP_848568.1| PREDICTED: similar to TRK-fused gene isoform 2 ... 447 e-125
Alignment gi|XP_856531.1| PREDICTED: similar to TRK-fused gene isoform 3 ... 334 2e-91
>ref|XP_545076.1| PREDICTED: similar to TRK-fused gene isoform 1 [Canis familiaris].
Length = 401
Score = 447 bits (1150), Expect = e-125
Identities = 227/241 (94%), Positives = 229/241 (95%)
Frame = +2
Query: 296 MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD 475
MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD
Sbjct: 1 MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD 60
Query: 476 EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL 655
EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL
Sbjct: 61 EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL 120
Query: 656 DSLEPPGEPGPSTNITENDTVDGREEKPAASDSSGKQSTQVMAASMSAFDPLKNQDEINK 835
DSLEPPGEPGPS +I ENDTVDGR+EKPAASDSSGKQSTQVMAASMSAFDPLKNQDEINK
Sbjct: 121 DSLEPPGEPGPSGSIPENDTVDGRDEKPAASDSSGKQSTQVMAASMSAFDPLKNQDEINK 180
Query: 836 NVMSAFGLTDDQVSGPPSAPAEDRSGTPDXXXXXXXXXHPPGVQPQQPPYTGALTQAGQS 1015
NVMSAFGLTDDQVSGPPSAPAEDRSGTPD HPPGVQPQQPPYTGA TQAGQS
Sbjct: 181 NVMSAFGLTDDQVSGPPSAPAEDRSGTPDSIASSSSAAHPPGVQPQQPPYTGAQTQAGQS 240
Query: 1016 E 1018
E
Sbjct: 241 E 241
Score = 127 bits (320), Expect = 3e-29
Identities = 62/102 (60%), Positives = 65/102 (63%)
Frame = +2
Query: 1190 APAPAFSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAPASQPGMAPSQPGAYQ 1369
APAPAF+G V PASQPGMAPSQPGAYQ
Sbjct: 300 APAPAFAGQPQQLSAQPPQQYQASSYPPQTYTTQTSQPTNYTVPPASQPGMAPSQPGAYQ 359
Query: 1370 PRPGFTPPPGSTMTPLPSGSNPYARSRPPFGQGYTQPGPGYR 1495
PRPGFTPPPGSTMTP PSG NPYAR+RPPFGQGYT+PGPGYR
Sbjct: 360 PRPGFTPPPGSTMTPPPSGPNPYARTRPPFGQGYTKPGPGYR 401
>ref|XP_848568.1| PREDICTED: similar to TRK-fused gene isoform 2 [Canis familiaris].
Length = 301
Score = 447 bits (1150), Expect = e-125
Identities = 227/241 (94%), Positives = 229/241 (95%)
Frame = +2
Query: 296 MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD 475
MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD
Sbjct: 1 MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD 60
Query: 476 EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL 655
EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL
Sbjct: 61 EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL 120
Query: 656 DSLEPPGEPGPSTNITENDTVDGREEKPAASDSSGKQSTQVMAASMSAFDPLKNQDEINK 835
DSLEPPGEPGPS +I ENDTVDGR+EKPAASDSSGKQSTQVMAASMSAFDPLKNQDEINK
Sbjct: 121 DSLEPPGEPGPSGSIPENDTVDGRDEKPAASDSSGKQSTQVMAASMSAFDPLKNQDEINK 180
Query: 836 NVMSAFGLTDDQVSGPPSAPAEDRSGTPDXXXXXXXXXHPPGVQPQQPPYTGALTQAGQS 1015
NVMSAFGLTDDQVSGPPSAPAEDRSGTPD HPPGVQPQQPPYTGA TQAGQS
Sbjct: 181 NVMSAFGLTDDQVSGPPSAPAEDRSGTPDSIASSSSAAHPPGVQPQQPPYTGAQTQAGQS 240
Query: 1016 E 1018
E
Sbjct: 241 E 241
>ref|XP_856531.1| PREDICTED: similar to TRK-fused gene isoform 3 [Canis familiaris].
Length = 352
Score = 334 bits (856), Expect = 2e-91
Identities = 181/241 (75%), Positives = 182/241 (75%)
Frame = +2
Query: 296 MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD 475
MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD
Sbjct: 1 MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD 60
Query: 476 EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL 655
EDGDLITIFDSSDLSFAIQCSRILKLTLF
Sbjct: 61 EDGDLITIFDSSDLSFAIQCSRILKLTLF------------------------------- 89
Query: 656 DSLEPPGEPGPSTNITENDTVDGREEKPAASDSSGKQSTQVMAASMSAFDPLKNQDEINK 835
DTVDGR+EKPAASDSSGKQSTQVMAASMSAFDPLKNQDEINK
Sbjct: 90 ------------------DTVDGRDEKPAASDSSGKQSTQVMAASMSAFDPLKNQDEINK 131
Query: 836 NVMSAFGLTDDQVSGPPSAPAEDRSGTPDXXXXXXXXXHPPGVQPQQPPYTGALTQAGQS 1015
NVMSAFGLTDDQVSGPPSAPAEDRSGTPD HPPGVQPQQPPYTGA TQAGQS
Sbjct: 132 NVMSAFGLTDDQVSGPPSAPAEDRSGTPDSIASSSSAAHPPGVQPQQPPYTGAQTQAGQS 191
Query: 1016 E 1018
E
Sbjct: 192 E 192
Score = 127 bits (320), Expect = 3e-29
Identities = 62/102 (60%), Positives = 65/102 (63%)
Frame = +2
Query: 1190 APAPAFSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAPASQPGMAPSQPGAYQ 1369
APAPAF+G V PASQPGMAPSQPGAYQ
Sbjct: 251 APAPAFAGQPQQLSAQPPQQYQASSYPPQTYTTQTSQPTNYTVPPASQPGMAPSQPGAYQ 310
Query: 1370 PRPGFTPPPGSTMTPLPSGSNPYARSRPPFGQGYTQPGPGYR 1495
PRPGFTPPPGSTMTP PSG NPYAR+RPPFGQGYT+PGPGYR
Sbjct: 311 PRPGFTPPPGSTMTPPPSGPNPYARTRPPFGQGYTKPGPGYR 352
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 67,153,035
Number of extensions: 1815894
Number of successful extensions: 11546
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 11080
Number of HSP's successfully gapped: 6
Length of query: 642
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 533
Effective length of database: 15,240,880
Effective search space: 8123389040
Effective search space used: 8123389040
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001788
(1926 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001007566.1| protein TFG isoform 1 [Homo sapiens]. 442 e-124
Alignment gi|NP_001182407.1| protein TFG isoform 1 [Homo sapiens]. 442 e-124
Alignment gi|NP_006061.2| protein TFG isoform 1 [Homo sapiens]. 442 e-124
Alignment gi|NP_001182408.1| protein TFG isoform 2 [Homo sapiens]. 441 e-123
>ref|NP_001007566.1| protein TFG isoform 1 [Homo sapiens].
Length = 400
Score = 442 bits (1137), Expect = e-124
Identities = 227/241 (94%), Positives = 228/241 (94%)
Frame = +2
Query: 296 MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD 475
MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD
Sbjct: 1 MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD 60
Query: 476 EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL 655
EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL
Sbjct: 61 EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL 120
Query: 656 DSLEPPGEPGPSTNITENDTVDGREEKPAASDSSGKQSTQVMAASMSAFDPLKNQDEINK 835
DSLEPPGEPGPSTNI ENDTVDGREEK +ASDSSGKQSTQVMAASMSAFDPLKNQDEINK
Sbjct: 121 DSLEPPGEPGPSTNIPENDTVDGREEK-SASDSSGKQSTQVMAASMSAFDPLKNQDEINK 179
Query: 836 NVMSAFGLTDDQVSGPPSAPAEDRSGTPDXXXXXXXXXHPPGVQPQQPPYTGALTQAGQS 1015
NVMSAFGLTDDQVSGPPSAPAEDRSGTPD HPPGVQPQQPPYTGA TQAGQ
Sbjct: 180 NVMSAFGLTDDQVSGPPSAPAEDRSGTPDSIASSSSAAHPPGVQPQQPPYTGAQTQAGQI 239
Query: 1016 E 1018
E
Sbjct: 240 E 240
Score = 125 bits (314), Expect = 1e-28
Identities = 63/102 (61%), Positives = 64/102 (62%)
Frame = +2
Query: 1190 APAPAFSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAPASQPGMAPSQPGAYQ 1369
APAPAFSG VAPASQPGMAPSQPGAYQ
Sbjct: 299 APAPAFSGQPQQLPAQPPQQYQASNYPAQTYTAQTSQPTNYTVAPASQPGMAPSQPGAYQ 358
Query: 1370 PRPGFTPPPGSTMTPLPSGSNPYARSRPPFGQGYTQPGPGYR 1495
PRPGFT PGSTMTP PSG NPYAR+RPPFGQGYTQPGPGYR
Sbjct: 359 PRPGFTSLPGSTMTPPPSGPNPYARNRPPFGQGYTQPGPGYR 400
>ref|NP_001182407.1| protein TFG isoform 1 [Homo sapiens].
Length = 400
Score = 442 bits (1137), Expect = e-124
Identities = 227/241 (94%), Positives = 228/241 (94%)
Frame = +2
Query: 296 MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD 475
MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD
Sbjct: 1 MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD 60
Query: 476 EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL 655
EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL
Sbjct: 61 EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL 120
Query: 656 DSLEPPGEPGPSTNITENDTVDGREEKPAASDSSGKQSTQVMAASMSAFDPLKNQDEINK 835
DSLEPPGEPGPSTNI ENDTVDGREEK +ASDSSGKQSTQVMAASMSAFDPLKNQDEINK
Sbjct: 121 DSLEPPGEPGPSTNIPENDTVDGREEK-SASDSSGKQSTQVMAASMSAFDPLKNQDEINK 179
Query: 836 NVMSAFGLTDDQVSGPPSAPAEDRSGTPDXXXXXXXXXHPPGVQPQQPPYTGALTQAGQS 1015
NVMSAFGLTDDQVSGPPSAPAEDRSGTPD HPPGVQPQQPPYTGA TQAGQ
Sbjct: 180 NVMSAFGLTDDQVSGPPSAPAEDRSGTPDSIASSSSAAHPPGVQPQQPPYTGAQTQAGQI 239
Query: 1016 E 1018
E
Sbjct: 240 E 240
Score = 125 bits (314), Expect = 1e-28
Identities = 63/102 (61%), Positives = 64/102 (62%)
Frame = +2
Query: 1190 APAPAFSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAPASQPGMAPSQPGAYQ 1369
APAPAFSG VAPASQPGMAPSQPGAYQ
Sbjct: 299 APAPAFSGQPQQLPAQPPQQYQASNYPAQTYTAQTSQPTNYTVAPASQPGMAPSQPGAYQ 358
Query: 1370 PRPGFTPPPGSTMTPLPSGSNPYARSRPPFGQGYTQPGPGYR 1495
PRPGFT PGSTMTP PSG NPYAR+RPPFGQGYTQPGPGYR
Sbjct: 359 PRPGFTSLPGSTMTPPPSGPNPYARNRPPFGQGYTQPGPGYR 400
>ref|NP_006061.2| protein TFG isoform 1 [Homo sapiens].
Length = 400
Score = 442 bits (1137), Expect = e-124
Identities = 227/241 (94%), Positives = 228/241 (94%)
Frame = +2
Query: 296 MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD 475
MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD
Sbjct: 1 MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD 60
Query: 476 EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL 655
EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL
Sbjct: 61 EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL 120
Query: 656 DSLEPPGEPGPSTNITENDTVDGREEKPAASDSSGKQSTQVMAASMSAFDPLKNQDEINK 835
DSLEPPGEPGPSTNI ENDTVDGREEK +ASDSSGKQSTQVMAASMSAFDPLKNQDEINK
Sbjct: 121 DSLEPPGEPGPSTNIPENDTVDGREEK-SASDSSGKQSTQVMAASMSAFDPLKNQDEINK 179
Query: 836 NVMSAFGLTDDQVSGPPSAPAEDRSGTPDXXXXXXXXXHPPGVQPQQPPYTGALTQAGQS 1015
NVMSAFGLTDDQVSGPPSAPAEDRSGTPD HPPGVQPQQPPYTGA TQAGQ
Sbjct: 180 NVMSAFGLTDDQVSGPPSAPAEDRSGTPDSIASSSSAAHPPGVQPQQPPYTGAQTQAGQI 239
Query: 1016 E 1018
E
Sbjct: 240 E 240
Score = 125 bits (314), Expect = 1e-28
Identities = 63/102 (61%), Positives = 64/102 (62%)
Frame = +2
Query: 1190 APAPAFSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAPASQPGMAPSQPGAYQ 1369
APAPAFSG VAPASQPGMAPSQPGAYQ
Sbjct: 299 APAPAFSGQPQQLPAQPPQQYQASNYPAQTYTAQTSQPTNYTVAPASQPGMAPSQPGAYQ 358
Query: 1370 PRPGFTPPPGSTMTPLPSGSNPYARSRPPFGQGYTQPGPGYR 1495
PRPGFT PGSTMTP PSG NPYAR+RPPFGQGYTQPGPGYR
Sbjct: 359 PRPGFTSLPGSTMTPPPSGPNPYARNRPPFGQGYTQPGPGYR 400
>ref|NP_001182408.1| protein TFG isoform 2 [Homo sapiens].
Length = 396
Score = 441 bits (1134), Expect = e-123
Identities = 226/239 (94%), Positives = 227/239 (94%)
Frame = +2
Query: 296 MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD 475
MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD
Sbjct: 1 MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD 60
Query: 476 EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL 655
EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL
Sbjct: 61 EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL 120
Query: 656 DSLEPPGEPGPSTNITENDTVDGREEKPAASDSSGKQSTQVMAASMSAFDPLKNQDEINK 835
DSLEPPGEPGPSTNI ENDTVDGREEK +ASDSSGKQSTQVMAASMSAFDPLKNQDEINK
Sbjct: 121 DSLEPPGEPGPSTNIPENDTVDGREEK-SASDSSGKQSTQVMAASMSAFDPLKNQDEINK 179
Query: 836 NVMSAFGLTDDQVSGPPSAPAEDRSGTPDXXXXXXXXXHPPGVQPQQPPYTGALTQAGQ 1012
NVMSAFGLTDDQVSGPPSAPAEDRSGTPD HPPGVQPQQPPYTGA TQAGQ
Sbjct: 180 NVMSAFGLTDDQVSGPPSAPAEDRSGTPDSIASSSSAAHPPGVQPQQPPYTGAQTQAGQ 238
Score = 125 bits (314), Expect = 1e-28
Identities = 63/102 (61%), Positives = 64/102 (62%)
Frame = +2
Query: 1190 APAPAFSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAPASQPGMAPSQPGAYQ 1369
APAPAFSG VAPASQPGMAPSQPGAYQ
Sbjct: 295 APAPAFSGQPQQLPAQPPQQYQASNYPAQTYTAQTSQPTNYTVAPASQPGMAPSQPGAYQ 354
Query: 1370 PRPGFTPPPGSTMTPLPSGSNPYARSRPPFGQGYTQPGPGYR 1495
PRPGFT PGSTMTP PSG NPYAR+RPPFGQGYTQPGPGYR
Sbjct: 355 PRPGFTSLPGSTMTPPPSGPNPYARNRPPFGQGYTQPGPGYR 396
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 65,813,347
Number of extensions: 1766019
Number of successful extensions: 10177
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 9770
Number of HSP's successfully gapped: 8
Length of query: 642
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 533
Effective length of database: 14,704,088
Effective search space: 7837278904
Effective search space used: 7837278904
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001788
(1926 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062652.1| protein TFG [Mus musculus]. 435 e-122
>ref|NP_062652.1| protein TFG [Mus musculus].
Length = 397
Score = 435 bits (1119), Expect = e-122
Identities = 223/241 (92%), Positives = 225/241 (93%)
Frame = +2
Query: 296 MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD 475
MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD
Sbjct: 1 MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD 60
Query: 476 EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL 655
EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRREL+ELRNKVNRLL
Sbjct: 61 EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELVELRNKVNRLL 120
Query: 656 DSLEPPGEPGPSTNITENDTVDGREEKPAASDSSGKQSTQVMAASMSAFDPLKNQDEINK 835
DSLEPPGEPGPST+I ENDTVDGREEKPAASDSSGKQSTQVMAASMSAFDPLKNQDEINK
Sbjct: 121 DSLEPPGEPGPSTSIPENDTVDGREEKPAASDSSGKQSTQVMAASMSAFDPLKNQDEINK 180
Query: 836 NVMSAFGLTDDQVSGPPSAPAEDRSGTPDXXXXXXXXXHPPGVQPQQPPYTGALTQAGQS 1015
NVMSAFGLTDDQVSGPPSAP EDRSGTPD H P VQPQQPPY GA TQAGQ
Sbjct: 181 NVMSAFGLTDDQVSGPPSAPTEDRSGTPDSIASSSSAAH-PAVQPQQPPYAGAQTQAGQI 239
Query: 1016 E 1018
E
Sbjct: 240 E 240
Score = 119 bits (298), Expect = 8e-27
Identities = 59/102 (57%), Positives = 61/102 (59%)
Frame = +2
Query: 1190 APAPAFSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAPASQPGMAPSQPGAYQ 1369
APAPAFSG V P SQPGMAPSQPGAYQ
Sbjct: 296 APAPAFSGQPQQLPAQPPQQYQASTYPPQTYTTQPSQPANYTVPPGSQPGMAPSQPGAYQ 355
Query: 1370 PRPGFTPPPGSTMTPLPSGSNPYARSRPPFGQGYTQPGPGYR 1495
PRPGFTP P STMTP SG+NPYAR+RPPFGQGY QPGPGYR
Sbjct: 356 PRPGFTPSPASTMTPPSSGANPYARNRPPFGQGYAQPGPGYR 397
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 55,739,530
Number of extensions: 1467420
Number of successful extensions: 7960
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7575
Number of HSP's successfully gapped: 2
Length of query: 642
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 534
Effective length of database: 12,373,671
Effective search space: 6607540314
Effective search space used: 6607540314
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001788
(1926 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003358886.1| PREDICTED: protein TFG [Sus scrofa]. 416 e-116
>ref|XP_003358886.1| PREDICTED: protein TFG [Sus scrofa].
Length = 391
Score = 416 bits (1069), Expect = e-116
Identities = 216/241 (89%), Positives = 216/241 (89%)
Frame = +2
Query: 296 MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD 475
MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQ VF KD
Sbjct: 1 MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQSVFSW-----------IKD 49
Query: 476 EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL 655
DGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL
Sbjct: 50 ADGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL 109
Query: 656 DSLEPPGEPGPSTNITENDTVDGREEKPAASDSSGKQSTQVMAASMSAFDPLKNQDEINK 835
DSLEPPGEPGPSTNITENDTVDGREEKPAASDSSGKQSTQVMAASMSAFDPLKNQDEINK
Sbjct: 110 DSLEPPGEPGPSTNITENDTVDGREEKPAASDSSGKQSTQVMAASMSAFDPLKNQDEINK 169
Query: 836 NVMSAFGLTDDQVSGPPSAPAEDRSGTPDXXXXXXXXXHPPGVQPQQPPYTGALTQAGQS 1015
NVMSAFGLTDDQVSGPPSAPAEDRSGTPD HPPGVQPQQPPYTGALTQAGQS
Sbjct: 170 NVMSAFGLTDDQVSGPPSAPAEDRSGTPDSIASSSSAAHPPGVQPQQPPYTGALTQAGQS 229
Query: 1016 E 1018
E
Sbjct: 230 E 230
Score = 138 bits (347), Expect = 1e-32
Identities = 68/102 (66%), Positives = 68/102 (66%)
Frame = +2
Query: 1190 APAPAFSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAPASQPGMAPSQPGAYQ 1369
APAPAFSG VAPASQPGMAPSQPGAYQ
Sbjct: 290 APAPAFSGQPQQMPAQPPQQYQASSYPPQTYTTQTSQPTNYTVAPASQPGMAPSQPGAYQ 349
Query: 1370 PRPGFTPPPGSTMTPLPSGSNPYARSRPPFGQGYTQPGPGYR 1495
PRPGFTPPPGSTMTPLPSGSNPYARSRPPFGQGYTQPGPGYR
Sbjct: 350 PRPGFTPPPGSTMTPLPSGSNPYARSRPPFGQGYTQPGPGYR 391
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 41,444,102
Number of extensions: 1131811
Number of successful extensions: 6707
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6377
Number of HSP's successfully gapped: 2
Length of query: 642
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 537
Effective length of database: 8,729,747
Effective search space: 4687874139
Effective search space used: 4687874139
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001788
(1926 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 1532 0.0
Sscrofa_Chr09 147 3e-32
Sscrofa_Chr15 60 5e-06
>Sscrofa_Chr13
|| Length = 218635234
Score = 1532 bits (773), Expect = 0.0
Identities = 798/810 (98%)
Strand = Plus / Minus
Query: 1116 caggctatagtcagcagaccggaccccaacaacctcagcagttccagggatatggccagc 1175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167906027 caggctatagtcagcagaccggaccccaacaacctcagcagttccagggatatggccagc 167905968
Query: 1176 aaccaacttcccaggcaccggctcctgccttttctggccagcctcagcagatgcctgctc 1235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167905967 aaccaacttcccaggcaccggctcctgccttttctggccagcctcagcagatgcctgctc 167905908
Query: 1236 aaccaccacagcagtaccaggcgagcagttaccctccacagacttacactacccagactt 1295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167905907 aaccaccacagcagtaccaggcgagcagttaccctccacagacttacactacccagactt 167905848
Query: 1296 cccagcctactaattacactgtggcccctgcctcacaacctggaatggctccaagccaac 1355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167905847 cccagcctactaattacactgtggcccctgcctcacaacctggaatggctccaagccaac 167905788
Query: 1356 ccggggcctatcagcccagaccaggttttactccacctcctggaagtaccatgacccctc 1415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167905787 ccggggcctatcagcccagaccaggttttactccacctcctggaagtaccatgacccctc 167905728
Query: 1416 ttccaagtgggtctaacccttatgcacgtagccgtcctccctttggtcagggctataccc 1475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167905727 ttccaagtgggtctaacccttatgcacgtagccgtcctccctttggtcagggctataccc 167905668
Query: 1476 aacctggaccaggttaccgataaagaggctcagttacactgatgattgtagctgctagct 1535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167905667 aacctggaccaggttaccgataaagaggctcagttacactgatgattgtagctgctagct 167905608
Query: 1536 ctttgcctcccaaaagactccaatactactattttaatttgtattgaagttcagaaattt 1595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167905607 ctttgcctcccaaaagactccaatactactattttaatttgtattgaagttcagaaattt 167905548
Query: 1596 aaaaagcagagcattttttattgttgctgttaattgagagtataatttgctgggnnnnnn 1655
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167905547 aaaaagcagagcattttttattgttgctgttaattgagagtataatttgctgggaaaaaa 167905488
Query: 1656 nnnnngaccaaaatgaaagttcttttcctcccttgcttaaaataagtgtagcagcttcct 1715
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167905487 aaaaagaccaaaatgaaagttcttttcctcccttgcttaaaataagtgtagcagcttcct 167905428
Query: 1716 agttactttggaacactactcttaaatgtgtgcaaagtgattgactttctagcttgcctt 1775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167905427 agttactttggaacactactcttaaatgtgtgcaaagtgattgactttctagcttgcctt 167905368
Query: 1776 gtccagaggatattaaaatgctaggttgaagttcagtcatcttacttggctttttactat 1835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167905367 gtccagaggatattaaaatgctaggttgaagttcagtcatcttacttggctttttactat 167905308
Query: 1836 taacatgatgtactaaagtagattcctttgaaaagacaactagatattatgtattaaatg 1895
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 167905307 taacatgatgtactaaagtagattcctttgaaaagacaactagatattatgtataaaatg 167905248
Query: 1896 taacactgataggttaataaagatgattga 1925
||||||||||||||||||||||||||||||
Sbjct: 167905247 taacactgataggttaataaagatgattga 167905218
Score = 498 bits (251), Expect = e-138
Identities = 251/251 (100%)
Strand = Plus / Minus
Query: 1 cttcttgtacccgccccctctgctttccccacctgccacgtactgggcccgaggtctcgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168041387 cttcttgtacccgccccctctgctttccccacctgccacgtactgggcccgaggtctcgc 168041328
Query: 61 taggcttggtgggtctgtgcgattggccggggccagcgcaagcctgccagcgaggtgcgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168041327 taggcttggtgggtctgtgcgattggccggggccagcgcaagcctgccagcgaggtgcgg 168041268
Query: 121 cgggccggagggcaaccgagtgggccgtgactgcagctttctcccagcgccccagagcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168041267 cgggccggagggcaaccgagtgggccgtgactgcagctttctcccagcgccccagagcct 168041208
Query: 181 ggcagtggcagcctcgcacgagttgaatcagcggagacctgcggaggggtggcggcggcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168041207 ggcagtggcagcctcgcacgagttgaatcagcggagacctgcggaggggtggcggcggcc 168041148
Query: 241 tcggcaaaccg 251
|||||||||||
Sbjct: 168041147 tcggcaaaccg 168041137
Score = 339 bits (171), Expect = 3e-90
Identities = 177/179 (98%)
Strand = Plus / Minus
Query: 251 gtctttctctagagttaagacatatagaacatcctggagtctaccatgaatggacagttg 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168007962 gtctttctctagagttaagacatatagaacatcctggagtctaccatgaatggacagttg 168007903
Query: 311 gatctgagtgggaagctaatcatcaaagctcaacttggggaggatattcgacgaattccc 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168007902 gatctgagtgggaagctaatcatcaaagctcaacttggggaggatattcgacgaattccc 168007843
Query: 371 attcataatgaagatattacttatgatgaattagtgctaatgatgcaaagagtcttcag 429
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 168007842 attcataatgaagatattacttatgatgaattagtgttaatgatgcaaagtgtcttcag 168007784
Score = 337 bits (170), Expect = 1e-89
Identities = 170/170 (100%)
Strand = Plus / Minus
Query: 710 gatactgtggatggtagggaagaaaagcctgctgcttctgattcttctggaaaacagtct 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167919051 gatactgtggatggtagggaagaaaagcctgctgcttctgattcttctggaaaacagtct 167918992
Query: 770 actcaggtgatggcagcaagtatgtcagcttttgatcctttaaaaaaccaagatgaaatc 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167918991 actcaggtgatggcagcaagtatgtcagcttttgatcctttaaaaaaccaagatgaaatc 167918932
Query: 830 aataaaaatgtcatgtcagcatttggcctaacagatgatcaggtttcagg 879
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167918931 aataaaaatgtcatgtcagcatttggcctaacagatgatcaggtttcagg 167918882
Score = 293 bits (148), Expect = 2e-76
Identities = 148/148 (100%)
Strand = Plus / Minus
Query: 563 gttaatggtcaaccaagaccccttgaatcaagtcaagtgaaatatctacgtcgagaactg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167924755 gttaatggtcaaccaagaccccttgaatcaagtcaagtgaaatatctacgtcgagaactg 167924696
Query: 623 atagaacttcgaaataaagtgaatcgcttgttggatagcttggaaccacctggagaacca 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167924695 atagaacttcgaaataaagtgaatcgcttgttggatagcttggaaccacctggagaacca 167924636
Query: 683 ggaccgtccaccaacattactgaaaatg 710
||||||||||||||||||||||||||||
Sbjct: 167924635 ggaccgtccaccaacattactgaaaatg 167924608
Score = 289 bits (146), Expect = 3e-75
Identities = 146/146 (100%)
Strand = Plus / Minus
Query: 876 cagggccacccagtgctcctgcagaagaccgttcaggaactcccgacagcattgcttctt 935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167914294 cagggccacccagtgctcctgcagaagaccgttcaggaactcccgacagcattgcttctt 167914235
Query: 936 cctcctctgcagctcacccaccaggagttcagccacagcagccaccatatacaggagctc 995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167914234 cctcctctgcagctcacccaccaggagttcagccacagcagccaccatatacaggagctc 167914175
Query: 996 tgactcaagcaggtcagagtgaaggt 1021
||||||||||||||||||||||||||
Sbjct: 167914174 tgactcaagcaggtcagagtgaaggt 167914149
Score = 170 bits (86), Expect = 2e-39
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 478 agatggagatcttataacaatttttgatagttctgacctttcctttgcaattcagtgtag 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167931302 agatggagatcttataacaatttttgatagttctgacctttcctttgcaattcagtgtag 167931243
Query: 538 taggatactgaaactgacattatttg 563
||||||||||||||||||||||||||
Sbjct: 167931242 taggatactgaaactgacattatttg 167931217
Score = 168 bits (85), Expect = 7e-39
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 1018 aggtcagatgtaccagcagtacccgcagcaggctggctatggcactcagcagccacaggc 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167908798 aggtcagatgtaccagcagtacccgcagcaggctggctatggcactcagcagccacaggc 167908739
Query: 1078 gccgccccagccgccacagcagtac 1102
|||||||||||||||||||||||||
Sbjct: 167908738 gccgccccagccgccacagcagtac 167908714
>Sscrofa_Chr09
|| Length = 153670197
Score = 147 bits (74), Expect = 3e-32
Identities = 144/165 (87%), Gaps = 3/165 (1%)
Strand = Plus / Minus
Query: 1702 tgtagcagcttcctagttactttggaacactactcttaaatgtgtgcaaagtgattgact 1761
||||||||||||||||||| ||| || |||| ||| | | |||| |||||||||||||
Sbjct: 116609058 tgtagcagcttcctagttagtttacaatactaatctcacac-tgtgtaaagtgattgact 116609000
Query: 1762 ttctagcttgccttgtccagaggatattaaaatgctaggttgaagttcagtcatcttact 1821
|||||||||||||||||||||||||||||||||||||||||||| || | ||||||
Sbjct: 116608999 --ctagcttgccttgtccagaggatattaaaatgctaggttgaagtgtagcccccttact 116608942
Query: 1822 tggctttttactattaacatgatgtactaaagtagattcctttga 1866
|||||||| ||||||||| |||||| ||||||||||| |||||||
Sbjct: 116608941 tggcttttcactattaacgtgatgtcctaaagtagatccctttga 116608897
>Sscrofa_Chr15
|| Length = 157681621
Score = 60.0 bits (30), Expect = 5e-06
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 439 tctgagtaatgatgaagttacaataaaatataaagatg 476
|||||||||||||||||| ||||| |||||||||||||
Sbjct: 38603023 tctgagtaatgatgaagtaacaatgaaatataaagatg 38602986
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 64,596,822
Number of extensions: 503
Number of successful extensions: 503
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 502
Number of HSP's successfully gapped: 11
Length of query: 1926
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1904
Effective length of database: 2,808,408,574
Effective search space: 5347209924896
Effective search space used: 5347209924896
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)