Animal-Genome cDNA 20110601C-001788


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001788
         (1926 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001179905.1| protein TFG [Bos taurus].                         448   e-126
Alignment   gi|XP_002684764.1| PREDICTED: TRK-fused gene [Bos taurus].           446   e-125

>ref|NP_001179905.1| protein TFG [Bos taurus].
          Length = 401

 Score =  448 bits (1153), Expect = e-126
 Identities = 227/241 (94%), Positives = 230/241 (95%)
 Frame = +2

Query: 296  MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD 475
            MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD
Sbjct: 1    MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD 60

Query: 476  EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL 655
            EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL
Sbjct: 61   EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL 120

Query: 656  DSLEPPGEPGPSTNITENDTVDGREEKPAASDSSGKQSTQVMAASMSAFDPLKNQDEINK 835
            DSLEPPGEPGPS++I ENDTVDGREEKPAA+DSSGKQSTQVMAASMSAFDPLKNQDEINK
Sbjct: 121  DSLEPPGEPGPSSSIPENDTVDGREEKPAAADSSGKQSTQVMAASMSAFDPLKNQDEINK 180

Query: 836  NVMSAFGLTDDQVSGPPSAPAEDRSGTPDXXXXXXXXXHPPGVQPQQPPYTGALTQAGQS 1015
            NVMSAFGLTDDQVSGPPSAPAEDRSGTPD         HPPGVQPQQPPYTGA TQAGQS
Sbjct: 181  NVMSAFGLTDDQVSGPPSAPAEDRSGTPDSIASSSSAAHPPGVQPQQPPYTGAQTQAGQS 240

Query: 1016 E 1018
            E
Sbjct: 241  E 241



 Score =  135 bits (339), Expect = 2e-31
 Identities = 67/102 (65%), Positives = 67/102 (65%)
 Frame = +2

Query: 1190 APAPAFSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAPASQPGMAPSQPGAYQ 1369
            APAPAFSG                                  VAPASQPGMAPSQPGAYQ
Sbjct: 300  APAPAFSGQPQQLPAQPPQQYQASSYPQQTYTTQTSQPTNYTVAPASQPGMAPSQPGAYQ 359

Query: 1370 PRPGFTPPPGSTMTPLPSGSNPYARSRPPFGQGYTQPGPGYR 1495
            PRPGFTPPPGSTMTPL SGSNPYARSRPPFGQGYTQPGPGYR
Sbjct: 360  PRPGFTPPPGSTMTPLASGSNPYARSRPPFGQGYTQPGPGYR 401


>ref|XP_002684764.1| PREDICTED: TRK-fused gene [Bos taurus].
          Length = 401

 Score =  446 bits (1148), Expect = e-125
 Identities = 226/241 (93%), Positives = 229/241 (95%)
 Frame = +2

Query: 296  MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD 475
            MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD
Sbjct: 1    MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD 60

Query: 476  EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL 655
            EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL
Sbjct: 61   EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL 120

Query: 656  DSLEPPGEPGPSTNITENDTVDGREEKPAASDSSGKQSTQVMAASMSAFDPLKNQDEINK 835
            DSLEPPGEPGPS++I ENDTVDGREEKPAA+DSSGKQSTQVMAASMSAFDP KNQDEINK
Sbjct: 121  DSLEPPGEPGPSSSIPENDTVDGREEKPAAADSSGKQSTQVMAASMSAFDPXKNQDEINK 180

Query: 836  NVMSAFGLTDDQVSGPPSAPAEDRSGTPDXXXXXXXXXHPPGVQPQQPPYTGALTQAGQS 1015
            NVMSAFGLTDDQVSGPPSAPAEDRSGTPD         HPPGVQPQQPPYTGA TQAGQS
Sbjct: 181  NVMSAFGLTDDQVSGPPSAPAEDRSGTPDSIASSSSAAHPPGVQPQQPPYTGAQTQAGQS 240

Query: 1016 E 1018
            E
Sbjct: 241  E 241



 Score =  135 bits (339), Expect = 2e-31
 Identities = 67/102 (65%), Positives = 67/102 (65%)
 Frame = +2

Query: 1190 APAPAFSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAPASQPGMAPSQPGAYQ 1369
            APAPAFSG                                  VAPASQPGMAPSQPGAYQ
Sbjct: 300  APAPAFSGQPQQLPAQPPQQYQASSYPQQTYTTQTSQPTNYTVAPASQPGMAPSQPGAYQ 359

Query: 1370 PRPGFTPPPGSTMTPLPSGSNPYARSRPPFGQGYTQPGPGYR 1495
            PRPGFTPPPGSTMTPL SGSNPYARSRPPFGQGYTQPGPGYR
Sbjct: 360  PRPGFTPPPGSTMTPLASGSNPYARSRPPFGQGYTQPGPGYR 401


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 64,331,493
Number of extensions: 1754245
Number of successful extensions: 10069
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 9684
Number of HSP's successfully gapped: 4
Length of query: 642
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 533
Effective length of database: 14,074,782
Effective search space: 7501858806
Effective search space used: 7501858806
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001788
         (1926 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_545076.1| PREDICTED: similar to TRK-fused gene isoform 1 ...   447   e-125
Alignment   gi|XP_848568.1| PREDICTED: similar to TRK-fused gene isoform 2 ...   447   e-125
Alignment   gi|XP_856531.1| PREDICTED: similar to TRK-fused gene isoform 3 ...   334   2e-91

>ref|XP_545076.1| PREDICTED: similar to TRK-fused gene isoform 1 [Canis familiaris].
          Length = 401

 Score =  447 bits (1150), Expect = e-125
 Identities = 227/241 (94%), Positives = 229/241 (95%)
 Frame = +2

Query: 296  MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD 475
            MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD
Sbjct: 1    MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD 60

Query: 476  EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL 655
            EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL
Sbjct: 61   EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL 120

Query: 656  DSLEPPGEPGPSTNITENDTVDGREEKPAASDSSGKQSTQVMAASMSAFDPLKNQDEINK 835
            DSLEPPGEPGPS +I ENDTVDGR+EKPAASDSSGKQSTQVMAASMSAFDPLKNQDEINK
Sbjct: 121  DSLEPPGEPGPSGSIPENDTVDGRDEKPAASDSSGKQSTQVMAASMSAFDPLKNQDEINK 180

Query: 836  NVMSAFGLTDDQVSGPPSAPAEDRSGTPDXXXXXXXXXHPPGVQPQQPPYTGALTQAGQS 1015
            NVMSAFGLTDDQVSGPPSAPAEDRSGTPD         HPPGVQPQQPPYTGA TQAGQS
Sbjct: 181  NVMSAFGLTDDQVSGPPSAPAEDRSGTPDSIASSSSAAHPPGVQPQQPPYTGAQTQAGQS 240

Query: 1016 E 1018
            E
Sbjct: 241  E 241



 Score =  127 bits (320), Expect = 3e-29
 Identities = 62/102 (60%), Positives = 65/102 (63%)
 Frame = +2

Query: 1190 APAPAFSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAPASQPGMAPSQPGAYQ 1369
            APAPAF+G                                  V PASQPGMAPSQPGAYQ
Sbjct: 300  APAPAFAGQPQQLSAQPPQQYQASSYPPQTYTTQTSQPTNYTVPPASQPGMAPSQPGAYQ 359

Query: 1370 PRPGFTPPPGSTMTPLPSGSNPYARSRPPFGQGYTQPGPGYR 1495
            PRPGFTPPPGSTMTP PSG NPYAR+RPPFGQGYT+PGPGYR
Sbjct: 360  PRPGFTPPPGSTMTPPPSGPNPYARTRPPFGQGYTKPGPGYR 401


>ref|XP_848568.1| PREDICTED: similar to TRK-fused gene isoform 2 [Canis familiaris].
          Length = 301

 Score =  447 bits (1150), Expect = e-125
 Identities = 227/241 (94%), Positives = 229/241 (95%)
 Frame = +2

Query: 296  MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD 475
            MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD
Sbjct: 1    MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD 60

Query: 476  EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL 655
            EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL
Sbjct: 61   EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL 120

Query: 656  DSLEPPGEPGPSTNITENDTVDGREEKPAASDSSGKQSTQVMAASMSAFDPLKNQDEINK 835
            DSLEPPGEPGPS +I ENDTVDGR+EKPAASDSSGKQSTQVMAASMSAFDPLKNQDEINK
Sbjct: 121  DSLEPPGEPGPSGSIPENDTVDGRDEKPAASDSSGKQSTQVMAASMSAFDPLKNQDEINK 180

Query: 836  NVMSAFGLTDDQVSGPPSAPAEDRSGTPDXXXXXXXXXHPPGVQPQQPPYTGALTQAGQS 1015
            NVMSAFGLTDDQVSGPPSAPAEDRSGTPD         HPPGVQPQQPPYTGA TQAGQS
Sbjct: 181  NVMSAFGLTDDQVSGPPSAPAEDRSGTPDSIASSSSAAHPPGVQPQQPPYTGAQTQAGQS 240

Query: 1016 E 1018
            E
Sbjct: 241  E 241


>ref|XP_856531.1| PREDICTED: similar to TRK-fused gene isoform 3 [Canis familiaris].
          Length = 352

 Score =  334 bits (856), Expect = 2e-91
 Identities = 181/241 (75%), Positives = 182/241 (75%)
 Frame = +2

Query: 296  MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD 475
            MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD
Sbjct: 1    MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD 60

Query: 476  EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL 655
            EDGDLITIFDSSDLSFAIQCSRILKLTLF                               
Sbjct: 61   EDGDLITIFDSSDLSFAIQCSRILKLTLF------------------------------- 89

Query: 656  DSLEPPGEPGPSTNITENDTVDGREEKPAASDSSGKQSTQVMAASMSAFDPLKNQDEINK 835
                              DTVDGR+EKPAASDSSGKQSTQVMAASMSAFDPLKNQDEINK
Sbjct: 90   ------------------DTVDGRDEKPAASDSSGKQSTQVMAASMSAFDPLKNQDEINK 131

Query: 836  NVMSAFGLTDDQVSGPPSAPAEDRSGTPDXXXXXXXXXHPPGVQPQQPPYTGALTQAGQS 1015
            NVMSAFGLTDDQVSGPPSAPAEDRSGTPD         HPPGVQPQQPPYTGA TQAGQS
Sbjct: 132  NVMSAFGLTDDQVSGPPSAPAEDRSGTPDSIASSSSAAHPPGVQPQQPPYTGAQTQAGQS 191

Query: 1016 E 1018
            E
Sbjct: 192  E 192



 Score =  127 bits (320), Expect = 3e-29
 Identities = 62/102 (60%), Positives = 65/102 (63%)
 Frame = +2

Query: 1190 APAPAFSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAPASQPGMAPSQPGAYQ 1369
            APAPAF+G                                  V PASQPGMAPSQPGAYQ
Sbjct: 251  APAPAFAGQPQQLSAQPPQQYQASSYPPQTYTTQTSQPTNYTVPPASQPGMAPSQPGAYQ 310

Query: 1370 PRPGFTPPPGSTMTPLPSGSNPYARSRPPFGQGYTQPGPGYR 1495
            PRPGFTPPPGSTMTP PSG NPYAR+RPPFGQGYT+PGPGYR
Sbjct: 311  PRPGFTPPPGSTMTPPPSGPNPYARTRPPFGQGYTKPGPGYR 352


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 67,153,035
Number of extensions: 1815894
Number of successful extensions: 11546
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 11080
Number of HSP's successfully gapped: 6
Length of query: 642
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 533
Effective length of database: 15,240,880
Effective search space: 8123389040
Effective search space used: 8123389040
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001788
         (1926 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001007566.1| protein TFG isoform 1 [Homo sapiens].             442   e-124
Alignment   gi|NP_001182407.1| protein TFG isoform 1 [Homo sapiens].             442   e-124
Alignment   gi|NP_006061.2| protein TFG isoform 1 [Homo sapiens].                442   e-124
Alignment   gi|NP_001182408.1| protein TFG isoform 2 [Homo sapiens].             441   e-123

>ref|NP_001007566.1| protein TFG isoform 1 [Homo sapiens].
          Length = 400

 Score =  442 bits (1137), Expect = e-124
 Identities = 227/241 (94%), Positives = 228/241 (94%)
 Frame = +2

Query: 296  MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD 475
            MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD
Sbjct: 1    MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD 60

Query: 476  EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL 655
            EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL
Sbjct: 61   EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL 120

Query: 656  DSLEPPGEPGPSTNITENDTVDGREEKPAASDSSGKQSTQVMAASMSAFDPLKNQDEINK 835
            DSLEPPGEPGPSTNI ENDTVDGREEK +ASDSSGKQSTQVMAASMSAFDPLKNQDEINK
Sbjct: 121  DSLEPPGEPGPSTNIPENDTVDGREEK-SASDSSGKQSTQVMAASMSAFDPLKNQDEINK 179

Query: 836  NVMSAFGLTDDQVSGPPSAPAEDRSGTPDXXXXXXXXXHPPGVQPQQPPYTGALTQAGQS 1015
            NVMSAFGLTDDQVSGPPSAPAEDRSGTPD         HPPGVQPQQPPYTGA TQAGQ 
Sbjct: 180  NVMSAFGLTDDQVSGPPSAPAEDRSGTPDSIASSSSAAHPPGVQPQQPPYTGAQTQAGQI 239

Query: 1016 E 1018
            E
Sbjct: 240  E 240



 Score =  125 bits (314), Expect = 1e-28
 Identities = 63/102 (61%), Positives = 64/102 (62%)
 Frame = +2

Query: 1190 APAPAFSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAPASQPGMAPSQPGAYQ 1369
            APAPAFSG                                  VAPASQPGMAPSQPGAYQ
Sbjct: 299  APAPAFSGQPQQLPAQPPQQYQASNYPAQTYTAQTSQPTNYTVAPASQPGMAPSQPGAYQ 358

Query: 1370 PRPGFTPPPGSTMTPLPSGSNPYARSRPPFGQGYTQPGPGYR 1495
            PRPGFT  PGSTMTP PSG NPYAR+RPPFGQGYTQPGPGYR
Sbjct: 359  PRPGFTSLPGSTMTPPPSGPNPYARNRPPFGQGYTQPGPGYR 400


>ref|NP_001182407.1| protein TFG isoform 1 [Homo sapiens].
          Length = 400

 Score =  442 bits (1137), Expect = e-124
 Identities = 227/241 (94%), Positives = 228/241 (94%)
 Frame = +2

Query: 296  MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD 475
            MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD
Sbjct: 1    MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD 60

Query: 476  EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL 655
            EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL
Sbjct: 61   EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL 120

Query: 656  DSLEPPGEPGPSTNITENDTVDGREEKPAASDSSGKQSTQVMAASMSAFDPLKNQDEINK 835
            DSLEPPGEPGPSTNI ENDTVDGREEK +ASDSSGKQSTQVMAASMSAFDPLKNQDEINK
Sbjct: 121  DSLEPPGEPGPSTNIPENDTVDGREEK-SASDSSGKQSTQVMAASMSAFDPLKNQDEINK 179

Query: 836  NVMSAFGLTDDQVSGPPSAPAEDRSGTPDXXXXXXXXXHPPGVQPQQPPYTGALTQAGQS 1015
            NVMSAFGLTDDQVSGPPSAPAEDRSGTPD         HPPGVQPQQPPYTGA TQAGQ 
Sbjct: 180  NVMSAFGLTDDQVSGPPSAPAEDRSGTPDSIASSSSAAHPPGVQPQQPPYTGAQTQAGQI 239

Query: 1016 E 1018
            E
Sbjct: 240  E 240



 Score =  125 bits (314), Expect = 1e-28
 Identities = 63/102 (61%), Positives = 64/102 (62%)
 Frame = +2

Query: 1190 APAPAFSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAPASQPGMAPSQPGAYQ 1369
            APAPAFSG                                  VAPASQPGMAPSQPGAYQ
Sbjct: 299  APAPAFSGQPQQLPAQPPQQYQASNYPAQTYTAQTSQPTNYTVAPASQPGMAPSQPGAYQ 358

Query: 1370 PRPGFTPPPGSTMTPLPSGSNPYARSRPPFGQGYTQPGPGYR 1495
            PRPGFT  PGSTMTP PSG NPYAR+RPPFGQGYTQPGPGYR
Sbjct: 359  PRPGFTSLPGSTMTPPPSGPNPYARNRPPFGQGYTQPGPGYR 400


>ref|NP_006061.2| protein TFG isoform 1 [Homo sapiens].
          Length = 400

 Score =  442 bits (1137), Expect = e-124
 Identities = 227/241 (94%), Positives = 228/241 (94%)
 Frame = +2

Query: 296  MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD 475
            MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD
Sbjct: 1    MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD 60

Query: 476  EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL 655
            EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL
Sbjct: 61   EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL 120

Query: 656  DSLEPPGEPGPSTNITENDTVDGREEKPAASDSSGKQSTQVMAASMSAFDPLKNQDEINK 835
            DSLEPPGEPGPSTNI ENDTVDGREEK +ASDSSGKQSTQVMAASMSAFDPLKNQDEINK
Sbjct: 121  DSLEPPGEPGPSTNIPENDTVDGREEK-SASDSSGKQSTQVMAASMSAFDPLKNQDEINK 179

Query: 836  NVMSAFGLTDDQVSGPPSAPAEDRSGTPDXXXXXXXXXHPPGVQPQQPPYTGALTQAGQS 1015
            NVMSAFGLTDDQVSGPPSAPAEDRSGTPD         HPPGVQPQQPPYTGA TQAGQ 
Sbjct: 180  NVMSAFGLTDDQVSGPPSAPAEDRSGTPDSIASSSSAAHPPGVQPQQPPYTGAQTQAGQI 239

Query: 1016 E 1018
            E
Sbjct: 240  E 240



 Score =  125 bits (314), Expect = 1e-28
 Identities = 63/102 (61%), Positives = 64/102 (62%)
 Frame = +2

Query: 1190 APAPAFSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAPASQPGMAPSQPGAYQ 1369
            APAPAFSG                                  VAPASQPGMAPSQPGAYQ
Sbjct: 299  APAPAFSGQPQQLPAQPPQQYQASNYPAQTYTAQTSQPTNYTVAPASQPGMAPSQPGAYQ 358

Query: 1370 PRPGFTPPPGSTMTPLPSGSNPYARSRPPFGQGYTQPGPGYR 1495
            PRPGFT  PGSTMTP PSG NPYAR+RPPFGQGYTQPGPGYR
Sbjct: 359  PRPGFTSLPGSTMTPPPSGPNPYARNRPPFGQGYTQPGPGYR 400


>ref|NP_001182408.1| protein TFG isoform 2 [Homo sapiens].
          Length = 396

 Score =  441 bits (1134), Expect = e-123
 Identities = 226/239 (94%), Positives = 227/239 (94%)
 Frame = +2

Query: 296  MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD 475
            MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD
Sbjct: 1    MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD 60

Query: 476  EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL 655
            EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL
Sbjct: 61   EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL 120

Query: 656  DSLEPPGEPGPSTNITENDTVDGREEKPAASDSSGKQSTQVMAASMSAFDPLKNQDEINK 835
            DSLEPPGEPGPSTNI ENDTVDGREEK +ASDSSGKQSTQVMAASMSAFDPLKNQDEINK
Sbjct: 121  DSLEPPGEPGPSTNIPENDTVDGREEK-SASDSSGKQSTQVMAASMSAFDPLKNQDEINK 179

Query: 836  NVMSAFGLTDDQVSGPPSAPAEDRSGTPDXXXXXXXXXHPPGVQPQQPPYTGALTQAGQ 1012
            NVMSAFGLTDDQVSGPPSAPAEDRSGTPD         HPPGVQPQQPPYTGA TQAGQ
Sbjct: 180  NVMSAFGLTDDQVSGPPSAPAEDRSGTPDSIASSSSAAHPPGVQPQQPPYTGAQTQAGQ 238



 Score =  125 bits (314), Expect = 1e-28
 Identities = 63/102 (61%), Positives = 64/102 (62%)
 Frame = +2

Query: 1190 APAPAFSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAPASQPGMAPSQPGAYQ 1369
            APAPAFSG                                  VAPASQPGMAPSQPGAYQ
Sbjct: 295  APAPAFSGQPQQLPAQPPQQYQASNYPAQTYTAQTSQPTNYTVAPASQPGMAPSQPGAYQ 354

Query: 1370 PRPGFTPPPGSTMTPLPSGSNPYARSRPPFGQGYTQPGPGYR 1495
            PRPGFT  PGSTMTP PSG NPYAR+RPPFGQGYTQPGPGYR
Sbjct: 355  PRPGFTSLPGSTMTPPPSGPNPYARNRPPFGQGYTQPGPGYR 396


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 65,813,347
Number of extensions: 1766019
Number of successful extensions: 10177
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 9770
Number of HSP's successfully gapped: 8
Length of query: 642
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 533
Effective length of database: 14,704,088
Effective search space: 7837278904
Effective search space used: 7837278904
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001788
         (1926 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_062652.1| protein TFG [Mus musculus].                          435   e-122

>ref|NP_062652.1| protein TFG [Mus musculus].
          Length = 397

 Score =  435 bits (1119), Expect = e-122
 Identities = 223/241 (92%), Positives = 225/241 (93%)
 Frame = +2

Query: 296  MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD 475
            MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD
Sbjct: 1    MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD 60

Query: 476  EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL 655
            EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRREL+ELRNKVNRLL
Sbjct: 61   EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELVELRNKVNRLL 120

Query: 656  DSLEPPGEPGPSTNITENDTVDGREEKPAASDSSGKQSTQVMAASMSAFDPLKNQDEINK 835
            DSLEPPGEPGPST+I ENDTVDGREEKPAASDSSGKQSTQVMAASMSAFDPLKNQDEINK
Sbjct: 121  DSLEPPGEPGPSTSIPENDTVDGREEKPAASDSSGKQSTQVMAASMSAFDPLKNQDEINK 180

Query: 836  NVMSAFGLTDDQVSGPPSAPAEDRSGTPDXXXXXXXXXHPPGVQPQQPPYTGALTQAGQS 1015
            NVMSAFGLTDDQVSGPPSAP EDRSGTPD         H P VQPQQPPY GA TQAGQ 
Sbjct: 181  NVMSAFGLTDDQVSGPPSAPTEDRSGTPDSIASSSSAAH-PAVQPQQPPYAGAQTQAGQI 239

Query: 1016 E 1018
            E
Sbjct: 240  E 240



 Score =  119 bits (298), Expect = 8e-27
 Identities = 59/102 (57%), Positives = 61/102 (59%)
 Frame = +2

Query: 1190 APAPAFSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAPASQPGMAPSQPGAYQ 1369
            APAPAFSG                                  V P SQPGMAPSQPGAYQ
Sbjct: 296  APAPAFSGQPQQLPAQPPQQYQASTYPPQTYTTQPSQPANYTVPPGSQPGMAPSQPGAYQ 355

Query: 1370 PRPGFTPPPGSTMTPLPSGSNPYARSRPPFGQGYTQPGPGYR 1495
            PRPGFTP P STMTP  SG+NPYAR+RPPFGQGY QPGPGYR
Sbjct: 356  PRPGFTPSPASTMTPPSSGANPYARNRPPFGQGYAQPGPGYR 397


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 55,739,530
Number of extensions: 1467420
Number of successful extensions: 7960
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7575
Number of HSP's successfully gapped: 2
Length of query: 642
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 534
Effective length of database: 12,373,671
Effective search space: 6607540314
Effective search space used: 6607540314
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001788
         (1926 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003358886.1| PREDICTED: protein TFG [Sus scrofa].              416   e-116

>ref|XP_003358886.1| PREDICTED: protein TFG [Sus scrofa].
          Length = 391

 Score =  416 bits (1069), Expect = e-116
 Identities = 216/241 (89%), Positives = 216/241 (89%)
 Frame = +2

Query: 296  MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKD 475
            MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQ VF              KD
Sbjct: 1    MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQSVFSW-----------IKD 49

Query: 476  EDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL 655
             DGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL
Sbjct: 50   ADGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLL 109

Query: 656  DSLEPPGEPGPSTNITENDTVDGREEKPAASDSSGKQSTQVMAASMSAFDPLKNQDEINK 835
            DSLEPPGEPGPSTNITENDTVDGREEKPAASDSSGKQSTQVMAASMSAFDPLKNQDEINK
Sbjct: 110  DSLEPPGEPGPSTNITENDTVDGREEKPAASDSSGKQSTQVMAASMSAFDPLKNQDEINK 169

Query: 836  NVMSAFGLTDDQVSGPPSAPAEDRSGTPDXXXXXXXXXHPPGVQPQQPPYTGALTQAGQS 1015
            NVMSAFGLTDDQVSGPPSAPAEDRSGTPD         HPPGVQPQQPPYTGALTQAGQS
Sbjct: 170  NVMSAFGLTDDQVSGPPSAPAEDRSGTPDSIASSSSAAHPPGVQPQQPPYTGALTQAGQS 229

Query: 1016 E 1018
            E
Sbjct: 230  E 230



 Score =  138 bits (347), Expect = 1e-32
 Identities = 68/102 (66%), Positives = 68/102 (66%)
 Frame = +2

Query: 1190 APAPAFSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAPASQPGMAPSQPGAYQ 1369
            APAPAFSG                                  VAPASQPGMAPSQPGAYQ
Sbjct: 290  APAPAFSGQPQQMPAQPPQQYQASSYPPQTYTTQTSQPTNYTVAPASQPGMAPSQPGAYQ 349

Query: 1370 PRPGFTPPPGSTMTPLPSGSNPYARSRPPFGQGYTQPGPGYR 1495
            PRPGFTPPPGSTMTPLPSGSNPYARSRPPFGQGYTQPGPGYR
Sbjct: 350  PRPGFTPPPGSTMTPLPSGSNPYARSRPPFGQGYTQPGPGYR 391


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 41,444,102
Number of extensions: 1131811
Number of successful extensions: 6707
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6377
Number of HSP's successfully gapped: 2
Length of query: 642
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 537
Effective length of database: 8,729,747
Effective search space: 4687874139
Effective search space used: 4687874139
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001788
         (1926 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr13                                                        1532   0.0  
Sscrofa_Chr09                                                         147   3e-32
Sscrofa_Chr15                                                          60   5e-06

>Sscrofa_Chr13 
||          Length = 218635234

 Score = 1532 bits (773), Expect = 0.0
 Identities = 798/810 (98%)
 Strand = Plus / Minus

                                                                             
Query: 1116      caggctatagtcagcagaccggaccccaacaacctcagcagttccagggatatggccagc 1175
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167906027 caggctatagtcagcagaccggaccccaacaacctcagcagttccagggatatggccagc 167905968

                                                                             
Query: 1176      aaccaacttcccaggcaccggctcctgccttttctggccagcctcagcagatgcctgctc 1235
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167905967 aaccaacttcccaggcaccggctcctgccttttctggccagcctcagcagatgcctgctc 167905908

                                                                             
Query: 1236      aaccaccacagcagtaccaggcgagcagttaccctccacagacttacactacccagactt 1295
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167905907 aaccaccacagcagtaccaggcgagcagttaccctccacagacttacactacccagactt 167905848

                                                                             
Query: 1296      cccagcctactaattacactgtggcccctgcctcacaacctggaatggctccaagccaac 1355
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167905847 cccagcctactaattacactgtggcccctgcctcacaacctggaatggctccaagccaac 167905788

                                                                             
Query: 1356      ccggggcctatcagcccagaccaggttttactccacctcctggaagtaccatgacccctc 1415
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167905787 ccggggcctatcagcccagaccaggttttactccacctcctggaagtaccatgacccctc 167905728

                                                                             
Query: 1416      ttccaagtgggtctaacccttatgcacgtagccgtcctccctttggtcagggctataccc 1475
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167905727 ttccaagtgggtctaacccttatgcacgtagccgtcctccctttggtcagggctataccc 167905668

                                                                             
Query: 1476      aacctggaccaggttaccgataaagaggctcagttacactgatgattgtagctgctagct 1535
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167905667 aacctggaccaggttaccgataaagaggctcagttacactgatgattgtagctgctagct 167905608

                                                                             
Query: 1536      ctttgcctcccaaaagactccaatactactattttaatttgtattgaagttcagaaattt 1595
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167905607 ctttgcctcccaaaagactccaatactactattttaatttgtattgaagttcagaaattt 167905548

                                                                             
Query: 1596      aaaaagcagagcattttttattgttgctgttaattgagagtataatttgctgggnnnnnn 1655
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||      
Sbjct: 167905547 aaaaagcagagcattttttattgttgctgttaattgagagtataatttgctgggaaaaaa 167905488

                                                                             
Query: 1656      nnnnngaccaaaatgaaagttcttttcctcccttgcttaaaataagtgtagcagcttcct 1715
                      |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167905487 aaaaagaccaaaatgaaagttcttttcctcccttgcttaaaataagtgtagcagcttcct 167905428

                                                                             
Query: 1716      agttactttggaacactactcttaaatgtgtgcaaagtgattgactttctagcttgcctt 1775
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167905427 agttactttggaacactactcttaaatgtgtgcaaagtgattgactttctagcttgcctt 167905368

                                                                             
Query: 1776      gtccagaggatattaaaatgctaggttgaagttcagtcatcttacttggctttttactat 1835
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167905367 gtccagaggatattaaaatgctaggttgaagttcagtcatcttacttggctttttactat 167905308

                                                                             
Query: 1836      taacatgatgtactaaagtagattcctttgaaaagacaactagatattatgtattaaatg 1895
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 167905307 taacatgatgtactaaagtagattcctttgaaaagacaactagatattatgtataaaatg 167905248

                                               
Query: 1896      taacactgataggttaataaagatgattga 1925
                 ||||||||||||||||||||||||||||||
Sbjct: 167905247 taacactgataggttaataaagatgattga 167905218



 Score =  498 bits (251), Expect = e-138
 Identities = 251/251 (100%)
 Strand = Plus / Minus

                                                                             
Query: 1         cttcttgtacccgccccctctgctttccccacctgccacgtactgggcccgaggtctcgc 60
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168041387 cttcttgtacccgccccctctgctttccccacctgccacgtactgggcccgaggtctcgc 168041328

                                                                             
Query: 61        taggcttggtgggtctgtgcgattggccggggccagcgcaagcctgccagcgaggtgcgg 120
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168041327 taggcttggtgggtctgtgcgattggccggggccagcgcaagcctgccagcgaggtgcgg 168041268

                                                                             
Query: 121       cgggccggagggcaaccgagtgggccgtgactgcagctttctcccagcgccccagagcct 180
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168041267 cgggccggagggcaaccgagtgggccgtgactgcagctttctcccagcgccccagagcct 168041208

                                                                             
Query: 181       ggcagtggcagcctcgcacgagttgaatcagcggagacctgcggaggggtggcggcggcc 240
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168041207 ggcagtggcagcctcgcacgagttgaatcagcggagacctgcggaggggtggcggcggcc 168041148

                            
Query: 241       tcggcaaaccg 251
                 |||||||||||
Sbjct: 168041147 tcggcaaaccg 168041137



 Score =  339 bits (171), Expect = 3e-90
 Identities = 177/179 (98%)
 Strand = Plus / Minus

                                                                             
Query: 251       gtctttctctagagttaagacatatagaacatcctggagtctaccatgaatggacagttg 310
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168007962 gtctttctctagagttaagacatatagaacatcctggagtctaccatgaatggacagttg 168007903

                                                                             
Query: 311       gatctgagtgggaagctaatcatcaaagctcaacttggggaggatattcgacgaattccc 370
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168007902 gatctgagtgggaagctaatcatcaaagctcaacttggggaggatattcgacgaattccc 168007843

                                                                            
Query: 371       attcataatgaagatattacttatgatgaattagtgctaatgatgcaaagagtcttcag 429
                 |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 168007842 attcataatgaagatattacttatgatgaattagtgttaatgatgcaaagtgtcttcag 168007784



 Score =  337 bits (170), Expect = 1e-89
 Identities = 170/170 (100%)
 Strand = Plus / Minus

                                                                             
Query: 710       gatactgtggatggtagggaagaaaagcctgctgcttctgattcttctggaaaacagtct 769
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167919051 gatactgtggatggtagggaagaaaagcctgctgcttctgattcttctggaaaacagtct 167918992

                                                                             
Query: 770       actcaggtgatggcagcaagtatgtcagcttttgatcctttaaaaaaccaagatgaaatc 829
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167918991 actcaggtgatggcagcaagtatgtcagcttttgatcctttaaaaaaccaagatgaaatc 167918932

                                                                   
Query: 830       aataaaaatgtcatgtcagcatttggcctaacagatgatcaggtttcagg 879
                 ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167918931 aataaaaatgtcatgtcagcatttggcctaacagatgatcaggtttcagg 167918882



 Score =  293 bits (148), Expect = 2e-76
 Identities = 148/148 (100%)
 Strand = Plus / Minus

                                                                             
Query: 563       gttaatggtcaaccaagaccccttgaatcaagtcaagtgaaatatctacgtcgagaactg 622
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167924755 gttaatggtcaaccaagaccccttgaatcaagtcaagtgaaatatctacgtcgagaactg 167924696

                                                                             
Query: 623       atagaacttcgaaataaagtgaatcgcttgttggatagcttggaaccacctggagaacca 682
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167924695 atagaacttcgaaataaagtgaatcgcttgttggatagcttggaaccacctggagaacca 167924636

                                             
Query: 683       ggaccgtccaccaacattactgaaaatg 710
                 ||||||||||||||||||||||||||||
Sbjct: 167924635 ggaccgtccaccaacattactgaaaatg 167924608



 Score =  289 bits (146), Expect = 3e-75
 Identities = 146/146 (100%)
 Strand = Plus / Minus

                                                                             
Query: 876       cagggccacccagtgctcctgcagaagaccgttcaggaactcccgacagcattgcttctt 935
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167914294 cagggccacccagtgctcctgcagaagaccgttcaggaactcccgacagcattgcttctt 167914235

                                                                             
Query: 936       cctcctctgcagctcacccaccaggagttcagccacagcagccaccatatacaggagctc 995
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167914234 cctcctctgcagctcacccaccaggagttcagccacagcagccaccatatacaggagctc 167914175

                                           
Query: 996       tgactcaagcaggtcagagtgaaggt 1021
                 ||||||||||||||||||||||||||
Sbjct: 167914174 tgactcaagcaggtcagagtgaaggt 167914149



 Score =  170 bits (86), Expect = 2e-39
 Identities = 86/86 (100%)
 Strand = Plus / Minus

                                                                             
Query: 478       agatggagatcttataacaatttttgatagttctgacctttcctttgcaattcagtgtag 537
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167931302 agatggagatcttataacaatttttgatagttctgacctttcctttgcaattcagtgtag 167931243

                                           
Query: 538       taggatactgaaactgacattatttg 563
                 ||||||||||||||||||||||||||
Sbjct: 167931242 taggatactgaaactgacattatttg 167931217



 Score =  168 bits (85), Expect = 7e-39
 Identities = 85/85 (100%)
 Strand = Plus / Minus

                                                                             
Query: 1018      aggtcagatgtaccagcagtacccgcagcaggctggctatggcactcagcagccacaggc 1077
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167908798 aggtcagatgtaccagcagtacccgcagcaggctggctatggcactcagcagccacaggc 167908739

                                          
Query: 1078      gccgccccagccgccacagcagtac 1102
                 |||||||||||||||||||||||||
Sbjct: 167908738 gccgccccagccgccacagcagtac 167908714


>Sscrofa_Chr09 
||          Length = 153670197

 Score =  147 bits (74), Expect = 3e-32
 Identities = 144/165 (87%), Gaps = 3/165 (1%)
 Strand = Plus / Minus

                                                                             
Query: 1702      tgtagcagcttcctagttactttggaacactactcttaaatgtgtgcaaagtgattgact 1761
                 ||||||||||||||||||| |||  || |||| ||| | |  |||| |||||||||||||
Sbjct: 116609058 tgtagcagcttcctagttagtttacaatactaatctcacac-tgtgtaaagtgattgact 116609000

                                                                             
Query: 1762      ttctagcttgccttgtccagaggatattaaaatgctaggttgaagttcagtcatcttact 1821
                   ||||||||||||||||||||||||||||||||||||||||||||  || |  ||||||
Sbjct: 116608999 --ctagcttgccttgtccagaggatattaaaatgctaggttgaagtgtagcccccttact 116608942

                                                              
Query: 1822      tggctttttactattaacatgatgtactaaagtagattcctttga 1866
                 |||||||| ||||||||| |||||| ||||||||||| |||||||
Sbjct: 116608941 tggcttttcactattaacgtgatgtcctaaagtagatccctttga 116608897


>Sscrofa_Chr15 
||          Length = 157681621

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                      
Query: 439      tctgagtaatgatgaagttacaataaaatataaagatg 476
                |||||||||||||||||| ||||| |||||||||||||
Sbjct: 38603023 tctgagtaatgatgaagtaacaatgaaatataaagatg 38602986


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 64,596,822
Number of extensions: 503
Number of successful extensions: 503
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 502
Number of HSP's successfully gapped: 11
Length of query: 1926
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1904
Effective length of database: 2,808,408,574
Effective search space: 5347209924896
Effective search space used: 5347209924896
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)