Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001795
(1045 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014411.1| histone H3.3 [Bos taurus]. 265 7e-71
Alignment gi|NP_001229500.1| H3 histone, family 3B [Bos taurus]. 265 7e-71
Alignment gi|XP_002688969.1| PREDICTED: histone H3.3B-like [Bos taurus]. 261 9e-70
Alignment gi|XP_002684244.1| PREDICTED: H3 histone, family 3A [Bos taurus]. 261 9e-70
Alignment gi|XP_002688445.1| PREDICTED: histone H3.3B-like [Bos taurus]. 260 2e-69
Alignment gi|NP_001092840.1| H3 histone, family 3C [Bos taurus]. 258 5e-69
Alignment gi|NP_001160041.1| histone H3.2 [Bos taurus]. 258 5e-69
Alignment gi|XP_002686103.1| PREDICTED: histone cluster 2, H3c2-like [Bos... 258 5e-69
Alignment gi|XP_002686099.1| PREDICTED: histone cluster 2, H3c2-like [Bos... 258 5e-69
Alignment gi|XP_001249529.1| PREDICTED: H3 histone, family 3A [Bos taurus]. 258 5e-69
>ref|NP_001014411.1| histone H3.3 [Bos taurus].
Length = 136
Score = 265 bits (676), Expect = 7e-71
Identities = 136/136 (100%), Positives = 136/136 (100%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 496 MPKDIQLARRIRGERA 543
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_001229500.1| H3 histone, family 3B [Bos taurus].
Length = 136
Score = 265 bits (676), Expect = 7e-71
Identities = 136/136 (100%), Positives = 136/136 (100%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 496 MPKDIQLARRIRGERA 543
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_002688969.1| PREDICTED: histone H3.3B-like [Bos taurus].
Length = 136
Score = 261 bits (666), Expect = 9e-70
Identities = 134/136 (98%), Positives = 135/136 (99%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTA KSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTASKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 496 MPKDIQLARRIRGERA 543
+PKDIQLARRIRGERA
Sbjct: 121 IPKDIQLARRIRGERA 136
>ref|XP_002684244.1| PREDICTED: H3 histone, family 3A [Bos taurus].
Length = 136
Score = 261 bits (666), Expect = 9e-70
Identities = 134/136 (98%), Positives = 135/136 (99%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTA KSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTASKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 496 MPKDIQLARRIRGERA 543
+PKDIQLARRIRGERA
Sbjct: 121 IPKDIQLARRIRGERA 136
>ref|XP_002688445.1| PREDICTED: histone H3.3B-like [Bos taurus].
Length = 136
Score = 260 bits (664), Expect = 2e-69
Identities = 133/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTARKSTGGKAPRKQLATKAARK+APS GGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKTAPSIGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQD+KTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDYKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 496 MPKDIQLARRIRGERA 543
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_001092840.1| H3 histone, family 3C [Bos taurus].
Length = 136
Score = 258 bits (660), Expect = 5e-69
Identities = 131/136 (96%), Positives = 135/136 (99%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTARKSTGGKAPRKQL TKAARKSAPSTGG+KKPHRYRPGTVALREIRR+QKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLVTKAARKSAPSTGGMKKPHRYRPGTVALREIRRHQKSTE 60
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVT+
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTV 120
Query: 496 MPKDIQLARRIRGERA 543
MP+DIQLARRIRGERA
Sbjct: 121 MPRDIQLARRIRGERA 136
>ref|NP_001160041.1| histone H3.2 [Bos taurus].
Length = 136
Score = 258 bits (660), Expect = 5e-69
Identities = 132/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 496 MPKDIQLARRIRGERA 543
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_002686103.1| PREDICTED: histone cluster 2, H3c2-like [Bos taurus].
Length = 136
Score = 258 bits (660), Expect = 5e-69
Identities = 132/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 496 MPKDIQLARRIRGERA 543
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_002686099.1| PREDICTED: histone cluster 2, H3c2-like [Bos taurus].
Length = 136
Score = 258 bits (660), Expect = 5e-69
Identities = 132/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 496 MPKDIQLARRIRGERA 543
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_001249529.1| PREDICTED: H3 histone, family 3A [Bos taurus].
Length = 136
Score = 258 bits (660), Expect = 5e-69
Identities = 132/136 (97%), Positives = 134/136 (98%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTARKSTGGKAPRKQL TKAARK+APS GGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLTTKAARKTAPSIGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQD+KTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDYKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 496 MPKDIQLARRIRGERA 543
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,272,357
Number of extensions: 904790
Number of successful extensions: 2517
Number of sequences better than 1.0e-05: 59
Number of HSP's gapped: 2499
Number of HSP's successfully gapped: 59
Length of query: 348
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 245
Effective length of database: 14,273,310
Effective search space: 3496960950
Effective search space used: 3496960950
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001795
(1045 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_858804.1| PREDICTED: similar to H3 histone, family 3B iso... 265 7e-71
Alignment gi|XP_533123.2| PREDICTED: similar to H3 histone, family 3B iso... 265 7e-71
Alignment gi|XP_537232.1| PREDICTED: similar to H3 histone, family 3B iso... 265 7e-71
Alignment gi|XP_859248.1| PREDICTED: similar to histone 1, H2ai (predicte... 259 4e-69
Alignment gi|XP_537880.2| PREDICTED: similar to histone 1, H2ai (predicte... 259 4e-69
Alignment gi|XP_540290.1| PREDICTED: similar to H3 histone, family 2 isof... 258 5e-69
Alignment gi|XP_540285.1| PREDICTED: similar to H3 histone, family 2 isof... 258 5e-69
Alignment gi|XP_850744.1| PREDICTED: similar to CG31613-PA [Canis familia... 258 5e-69
Alignment gi|XP_854287.1| PREDICTED: similar to histone 1, H2ai (predicte... 256 2e-68
Alignment gi|XP_545428.1| PREDICTED: similar to histone 1, H2ai (predicte... 256 2e-68
>ref|XP_858804.1| PREDICTED: similar to H3 histone, family 3B isoform 4 [Canis
familiaris].
Length = 136
Score = 265 bits (676), Expect = 7e-71
Identities = 136/136 (100%), Positives = 136/136 (100%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 496 MPKDIQLARRIRGERA 543
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_533123.2| PREDICTED: similar to H3 histone, family 3B isoform 2 [Canis
familiaris].
Length = 136
Score = 265 bits (676), Expect = 7e-71
Identities = 136/136 (100%), Positives = 136/136 (100%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 496 MPKDIQLARRIRGERA 543
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_537232.1| PREDICTED: similar to H3 histone, family 3B isoform 1 [Canis
familiaris].
Length = 136
Score = 265 bits (676), Expect = 7e-71
Identities = 136/136 (100%), Positives = 136/136 (100%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 496 MPKDIQLARRIRGERA 543
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_859248.1| PREDICTED: similar to histone 1, H2ai (predicted) isoform 3 [Canis
familiaris].
Length = 259
Score = 259 bits (661), Expect = 4e-69
Identities = 133/140 (95%), Positives = 137/140 (97%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 496 MPKDIQLARRIRGERA*VKA 555
MPKDIQLARRIRGERA VK+
Sbjct: 121 MPKDIQLARRIRGERAEVKS 140
>ref|XP_537880.2| PREDICTED: similar to histone 1, H2ai (predicted) isoform 1 [Canis
familiaris].
Length = 259
Score = 259 bits (661), Expect = 4e-69
Identities = 133/140 (95%), Positives = 137/140 (97%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 496 MPKDIQLARRIRGERA*VKA 555
MPKDIQLARRIRGERA VK+
Sbjct: 121 MPKDIQLARRIRGERAEVKS 140
>ref|XP_540290.1| PREDICTED: similar to H3 histone, family 2 isoform 2 [Canis
familiaris].
Length = 174
Score = 258 bits (660), Expect = 5e-69
Identities = 132/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 39 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 98
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 99 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 158
Query: 496 MPKDIQLARRIRGERA 543
MPKDIQLARRIRGERA
Sbjct: 159 MPKDIQLARRIRGERA 174
>ref|XP_540285.1| PREDICTED: similar to H3 histone, family 2 isoform 2 [Canis
familiaris].
Length = 174
Score = 258 bits (660), Expect = 5e-69
Identities = 132/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 39 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 98
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 99 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 158
Query: 496 MPKDIQLARRIRGERA 543
MPKDIQLARRIRGERA
Sbjct: 159 MPKDIQLARRIRGERA 174
>ref|XP_850744.1| PREDICTED: similar to CG31613-PA [Canis familiaris].
Length = 136
Score = 258 bits (660), Expect = 5e-69
Identities = 132/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 496 MPKDIQLARRIRGERA 543
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_854287.1| PREDICTED: similar to histone 1, H2ai (predicted) [Canis
familiaris].
Length = 156
Score = 256 bits (655), Expect = 2e-68
Identities = 131/136 (96%), Positives = 134/136 (98%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 21 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 80
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 81 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 140
Query: 496 MPKDIQLARRIRGERA 543
MPKDIQLARRIRGERA
Sbjct: 141 MPKDIQLARRIRGERA 156
>ref|XP_545428.1| PREDICTED: similar to histone 1, H2ai (predicted) [Canis
familiaris].
Length = 136
Score = 256 bits (655), Expect = 2e-68
Identities = 131/136 (96%), Positives = 134/136 (98%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 496 MPKDIQLARRIRGERA 543
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,758,158
Number of extensions: 914096
Number of successful extensions: 2534
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 2530
Number of HSP's successfully gapped: 29
Length of query: 348
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 244
Effective length of database: 15,407,560
Effective search space: 3759444640
Effective search space used: 3759444640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001795
(1045 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002098.1| histone H3.3 [Homo sapiens]. 265 7e-71
Alignment gi|NP_005315.1| histone H3.3 [Homo sapiens]. 265 7e-71
Alignment gi|NP_001005464.1| histone H3.2 [Homo sapiens]. 258 5e-69
Alignment gi|NP_066403.2| histone H3.2 [Homo sapiens]. 258 5e-69
Alignment gi|NP_001116847.1| histone H3.2 [Homo sapiens]. 258 5e-69
Alignment gi|NP_003521.2| histone cluster 1, H3d [Homo sapiens]. 256 2e-68
Alignment gi|NP_066298.1| histone H3.1 [Homo sapiens]. 256 2e-68
Alignment gi|NP_003527.1| histone H3.1 [Homo sapiens]. 256 2e-68
Alignment gi|NP_003528.1| histone H3.1 [Homo sapiens]. 256 2e-68
Alignment gi|NP_003526.1| histone H3.1 [Homo sapiens]. 256 2e-68
>ref|NP_002098.1| histone H3.3 [Homo sapiens].
Length = 136
Score = 265 bits (676), Expect = 7e-71
Identities = 136/136 (100%), Positives = 136/136 (100%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 496 MPKDIQLARRIRGERA 543
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_005315.1| histone H3.3 [Homo sapiens].
Length = 136
Score = 265 bits (676), Expect = 7e-71
Identities = 136/136 (100%), Positives = 136/136 (100%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 496 MPKDIQLARRIRGERA 543
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_001005464.1| histone H3.2 [Homo sapiens].
Length = 136
Score = 258 bits (660), Expect = 5e-69
Identities = 132/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 496 MPKDIQLARRIRGERA 543
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_066403.2| histone H3.2 [Homo sapiens].
Length = 136
Score = 258 bits (660), Expect = 5e-69
Identities = 132/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 496 MPKDIQLARRIRGERA 543
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_001116847.1| histone H3.2 [Homo sapiens].
Length = 136
Score = 258 bits (660), Expect = 5e-69
Identities = 132/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 496 MPKDIQLARRIRGERA 543
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_003521.2| histone cluster 1, H3d [Homo sapiens].
Length = 136
Score = 256 bits (655), Expect = 2e-68
Identities = 131/136 (96%), Positives = 134/136 (98%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 496 MPKDIQLARRIRGERA 543
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_066298.1| histone H3.1 [Homo sapiens].
Length = 136
Score = 256 bits (655), Expect = 2e-68
Identities = 131/136 (96%), Positives = 134/136 (98%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 496 MPKDIQLARRIRGERA 543
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_003527.1| histone H3.1 [Homo sapiens].
Length = 136
Score = 256 bits (655), Expect = 2e-68
Identities = 131/136 (96%), Positives = 134/136 (98%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 496 MPKDIQLARRIRGERA 543
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_003528.1| histone H3.1 [Homo sapiens].
Length = 136
Score = 256 bits (655), Expect = 2e-68
Identities = 131/136 (96%), Positives = 134/136 (98%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 496 MPKDIQLARRIRGERA 543
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_003526.1| histone H3.1 [Homo sapiens].
Length = 136
Score = 256 bits (655), Expect = 2e-68
Identities = 131/136 (96%), Positives = 134/136 (98%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 496 MPKDIQLARRIRGERA 543
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,067,197
Number of extensions: 893162
Number of successful extensions: 2376
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 2373
Number of HSP's successfully gapped: 19
Length of query: 348
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 245
Effective length of database: 14,901,872
Effective search space: 3650958640
Effective search space used: 3650958640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001795
(1045 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032237.1| histone H3.3 [Mus musculus]. 265 6e-71
Alignment gi|NP_032236.1| histone H3.3 [Mus musculus]. 265 6e-71
Alignment gi|XP_003085943.1| PREDICTED: histone H3.3-like [Mus musculus]. 263 1e-70
Alignment gi|XP_001477409.1| PREDICTED: histone H3.3-like isoform 1 [Mus ... 261 6e-70
Alignment gi|XP_894986.1| PREDICTED: histone H3.3-like [Mus musculus]. 260 1e-69
Alignment gi|XP_003086287.1| PREDICTED: histone H3.3-like [Mus musculus]. 259 2e-69
Alignment gi|NP_473386.1| histone H3.2 [Mus musculus]. 258 4e-69
Alignment gi|NP_038576.1| histone H3.2 [Mus musculus]. 258 4e-69
Alignment gi|NP_835587.1| histone H3.2 [Mus musculus]. 258 4e-69
Alignment gi|NP_835512.1| histone H3.2 [Mus musculus]. 258 4e-69
>ref|NP_032237.1| histone H3.3 [Mus musculus].
Length = 136
Score = 265 bits (676), Expect = 6e-71
Identities = 136/136 (100%), Positives = 136/136 (100%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 496 MPKDIQLARRIRGERA 543
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_032236.1| histone H3.3 [Mus musculus].
Length = 136
Score = 265 bits (676), Expect = 6e-71
Identities = 136/136 (100%), Positives = 136/136 (100%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 496 MPKDIQLARRIRGERA 543
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_003085943.1| PREDICTED: histone H3.3-like [Mus musculus].
Length = 136
Score = 263 bits (673), Expect = 1e-70
Identities = 135/136 (99%), Positives = 136/136 (100%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQK+TE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKATE 60
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 496 MPKDIQLARRIRGERA 543
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_001477409.1| PREDICTED: histone H3.3-like isoform 1 [Mus musculus].
Length = 136
Score = 261 bits (667), Expect = 6e-70
Identities = 134/136 (98%), Positives = 135/136 (99%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTARKSTGGKAPRKQLATKAARKSAPS GGVKKPHRYRPGTVALREIRRYQK+TE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSIGGVKKPHRYRPGTVALREIRRYQKATE 60
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 496 MPKDIQLARRIRGERA 543
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_894986.1| PREDICTED: histone H3.3-like [Mus musculus].
Length = 136
Score = 260 bits (665), Expect = 1e-69
Identities = 134/136 (98%), Positives = 134/136 (98%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MA TKQTARKSTGGKAPRKQLATKA RKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MALTKQTARKSTGGKAPRKQLATKATRKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 496 MPKDIQLARRIRGERA 543
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_003086287.1| PREDICTED: histone H3.3-like [Mus musculus].
Length = 136
Score = 259 bits (663), Expect = 2e-69
Identities = 134/136 (98%), Positives = 134/136 (98%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MA TKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MALTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLV EIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVXEIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 496 MPKDIQLARRIRGERA 543
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_473386.1| histone H3.2 [Mus musculus].
Length = 136
Score = 258 bits (660), Expect = 4e-69
Identities = 132/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 496 MPKDIQLARRIRGERA 543
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_038576.1| histone H3.2 [Mus musculus].
Length = 136
Score = 258 bits (660), Expect = 4e-69
Identities = 132/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 496 MPKDIQLARRIRGERA 543
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_835587.1| histone H3.2 [Mus musculus].
Length = 136
Score = 258 bits (660), Expect = 4e-69
Identities = 132/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 496 MPKDIQLARRIRGERA 543
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_835512.1| histone H3.2 [Mus musculus].
Length = 136
Score = 258 bits (660), Expect = 4e-69
Identities = 132/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 496 MPKDIQLARRIRGERA 543
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,718,483
Number of extensions: 756498
Number of successful extensions: 2001
Number of sequences better than 1.0e-05: 30
Number of HSP's gapped: 1997
Number of HSP's successfully gapped: 30
Length of query: 348
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 246
Effective length of database: 12,553,887
Effective search space: 3088256202
Effective search space used: 3088256202
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001795
(1045 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999095.1| histone H3.3 [Sus scrofa]. 265 4e-71
Alignment gi|XP_003131242.1| PREDICTED: histone H3.3-like [Sus scrofa]. 265 4e-71
Alignment gi|XP_003355255.1| PREDICTED: histone H3.2-like [Sus scrofa]. 258 3e-69
Alignment gi|XP_003125833.1| PREDICTED: histone H3.2 [Sus scrofa]. 258 3e-69
Alignment gi|XP_003356567.1| PREDICTED: hypothetical protein LOC100627410... 258 4e-69
Alignment gi|XP_003128260.1| PREDICTED: histone H3.1-like [Sus scrofa]. 256 1e-68
Alignment gi|XP_003356602.1| PREDICTED: histone H3.1-like [Sus scrofa]. 256 1e-68
Alignment gi|XP_003356599.1| PREDICTED: histone H3.1-like [Sus scrofa]. 256 1e-68
Alignment gi|XP_001927401.1| PREDICTED: histone H3.1-like [Sus scrofa]. 256 1e-68
Alignment gi|XP_001927414.1| PREDICTED: histone H3.1-like [Sus scrofa]. 256 1e-68
>ref|NP_999095.1| histone H3.3 [Sus scrofa].
Length = 136
Score = 265 bits (676), Expect = 4e-71
Identities = 136/136 (100%), Positives = 136/136 (100%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 496 MPKDIQLARRIRGERA 543
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_003131242.1| PREDICTED: histone H3.3-like [Sus scrofa].
Length = 136
Score = 265 bits (676), Expect = 4e-71
Identities = 136/136 (100%), Positives = 136/136 (100%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 496 MPKDIQLARRIRGERA 543
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_003355255.1| PREDICTED: histone H3.2-like [Sus scrofa].
Length = 136
Score = 258 bits (660), Expect = 3e-69
Identities = 132/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 496 MPKDIQLARRIRGERA 543
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_003125833.1| PREDICTED: histone H3.2 [Sus scrofa].
Length = 136
Score = 258 bits (660), Expect = 3e-69
Identities = 132/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 496 MPKDIQLARRIRGERA 543
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_003356567.1| PREDICTED: hypothetical protein LOC100627410 [Sus scrofa].
Length = 282
Score = 258 bits (659), Expect = 4e-69
Identities = 133/136 (97%), Positives = 134/136 (98%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
+ARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 147 VARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 206
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 207 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 266
Query: 496 MPKDIQLARRIRGERA 543
MPKDIQLA IRGERA
Sbjct: 267 MPKDIQLAHCIRGERA 282
>ref|XP_003128260.1| PREDICTED: histone H3.1-like [Sus scrofa].
Length = 136
Score = 256 bits (655), Expect = 1e-68
Identities = 131/136 (96%), Positives = 134/136 (98%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 496 MPKDIQLARRIRGERA 543
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_003356602.1| PREDICTED: histone H3.1-like [Sus scrofa].
Length = 136
Score = 256 bits (655), Expect = 1e-68
Identities = 131/136 (96%), Positives = 134/136 (98%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 496 MPKDIQLARRIRGERA 543
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_003356599.1| PREDICTED: histone H3.1-like [Sus scrofa].
Length = 136
Score = 256 bits (655), Expect = 1e-68
Identities = 131/136 (96%), Positives = 134/136 (98%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 496 MPKDIQLARRIRGERA 543
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_001927401.1| PREDICTED: histone H3.1-like [Sus scrofa].
Length = 136
Score = 256 bits (655), Expect = 1e-68
Identities = 131/136 (96%), Positives = 134/136 (98%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 496 MPKDIQLARRIRGERA 543
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_001927414.1| PREDICTED: histone H3.1-like [Sus scrofa].
Length = 136
Score = 256 bits (655), Expect = 1e-68
Identities = 131/136 (96%), Positives = 134/136 (98%)
Frame = +1
Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 496 MPKDIQLARRIRGERA 543
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,880,624
Number of extensions: 609810
Number of successful extensions: 1546
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 1544
Number of HSP's successfully gapped: 17
Length of query: 348
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 248
Effective length of database: 8,854,232
Effective search space: 2195849536
Effective search space used: 2195849536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001795
(1045 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 1037 0.0
Sscrofa_Chr07 184 6e-44
Sscrofa_Chr09 149 4e-33
Sscrofa_Chr04 137 1e-29
Sscrofa_Chr01 113 2e-22
Sscrofa_Chr03 96 5e-17
Sscrofa_Chr15 60 3e-06
>Sscrofa_Chr12
|| Length = 63588571
Score = 1037 bits (523), Expect = 0.0
Identities = 567/580 (97%), Gaps = 3/580 (0%)
Strand = Plus / Plus
Query: 415 caggaggctagtgaagcgtacctggtgggtttatttgaagataccaatctgtgtgccatc 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5579820 caggaggctagtgaagcgtacctggtgggtttatttgaagataccaatctgtgtgccatc 5579879
Query: 475 cacgctaagagagtcaccatcatgcccaaagacatccagttggctcgccggatacgggga 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5579880 cacgctaagagagtcaccatcatgcccaaagacatccagttggctcgccggatacgggga 5579939
Query: 535 gagagagcttaagtgaaggcagtttttatggtgttttgtagtaaattctgtaaaatactt 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5579940 gagagagcttaagtgaaggcagtttttatggtgttttgtagtaaattctgtaaaatactt 5579999
Query: 595 tggtttaatttgtgacnnnnnnngtaagaaattgtttataatatgttgcatttgtactta 654
|||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 5580000 tggtttaatttgtgactttttttgtaagaaattgtttataatatgttgcatttgtactta 5580059
Query: 655 agtcattccatctttcactcaggatgaatgcgaaaagtgactgttcacagacctcagtga 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5580060 agtcattccatctttcactcaggatgaatgcgaaaagtgactgttcacagacctcagtga 5580119
Query: 715 tgtgagcactgttgctcaggagtgacaagttgctaatatgcagaagggatgggtgatatt 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5580120 tgtgagcactgttgctcaggagtgacaagttgctaatatgcagaagggatgggtgatatt 5580179
Query: 775 tcttgcttctcatgatgcatgtttctgtatgttaatgacttgttgggtagctattaaggt 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5580180 tcttgcttctcatgatgcatgtttctgtatgttaatgacttgttgggtagctattaaggt 5580239
Query: 835 actagaattgataaatgtgtacagggtccttttgcaataaaactggttatgacttgatcc 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5580240 actagaattgataaatgtgtacagggtccttttgcaataaaactggttatgacttgatcc 5580299
Query: 895 aagtgtttaacaattggggctgttaagtctgaccatacatcactgtgatagaatgggggg 954
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 5580300 aagtgtttaacaattggggctgttaagtctgaccatacatcactgtgatagaat-gtggg 5580358
Query: 955 ctttttcaaggggtgaaaaatacaagtcttaaccccagtg 994
||||||||| ||||| || ||||||||||||||| |||||
Sbjct: 5580359 ctttttcaa-gggtg-aagatacaagtcttaaccacagtg 5580396
Score = 317 bits (160), Expect = 7e-84
Identities = 163/164 (99%)
Strand = Plus / Plus
Query: 255 tcgctacaggcccgggaccgtcgcgcttcgagaaatccgtcgttaccaaaagtccacgga 314
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5579573 tcgctccaggcccgggaccgtcgcgcttcgagaaatccgtcgttaccaaaagtccacgga 5579632
Query: 315 gcttctgatccggaagctgcccttccagaggttggtgagggagatcgcccaggatttcaa 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5579633 gcttctgatccggaagctgcccttccagaggttggtgagggagatcgcccaggatttcaa 5579692
Query: 375 aactgacttgaggttccagagcgccgccattggtgcgcttcagg 418
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5579693 aactgacttgaggttccagagcgccgccattggtgcgcttcagg 5579736
Score = 278 bits (140), Expect = 6e-72
Identities = 140/140 (100%)
Strand = Plus / Plus
Query: 125 ggtaaaagaaaatggcccgaaccaagcagactgctcgtaagtccacgggtgggaaagcgc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5579323 ggtaaaagaaaatggcccgaaccaagcagactgctcgtaagtccacgggtgggaaagcgc 5579382
Query: 185 cccgcaaacagctggccactaaagctgccaggaaaagcgctccctctaccggcggggtga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5579383 cccgcaaacagctggccactaaagctgccaggaaaagcgctccctctaccggcggggtga 5579442
Query: 245 aaaaacctcatcgctacagg 264
||||||||||||||||||||
Sbjct: 5579443 aaaaacctcatcgctacagg 5579462
Score = 256 bits (129), Expect = 2e-65
Identities = 129/129 (100%)
Strand = Plus / Plus
Query: 1 ggagcgcagagcggtttggtcgttcgttggagttgcttcttgctttggttcggcgactgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5578729 ggagcgcagagcggtttggtcgttcgttggagttgcttcttgctttggttcggcgactgc 5578788
Query: 61 ggctcttcattgggcggcgggagcggcacggcggtgggggaagcggcctcagacttcgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5578789 ggctcttcattgggcggcgggagcggcacggcggtgggggaagcggcctcagacttcgct 5578848
Query: 121 gttgggtaa 129
|||||||||
Sbjct: 5578849 gttgggtaa 5578857
>Sscrofa_Chr07
|| Length = 134764511
Score = 184 bits (93), Expect = 6e-44
Identities = 315/389 (80%)
Strand = Plus / Minus
Query: 136 atggcccgaaccaagcagactgctcgtaagtccacgggtgggaaagcgccccgcaaacag 195
||||| || ||||||||||| ||||| |||||||| || || || ||||| ||||| |||
Sbjct: 23089448 atggctcgtaccaagcagacagctcgcaagtccaccggcggcaaggcgccgcgcaagcag 23089389
Query: 196 ctggccactaaagctgccaggaaaagcgctccctctaccggcggggtgaaaaaacctcat 255
|||||||| || || ||| | || ||||| ||| | |||||||| ||||| || || ||
Sbjct: 23089388 ctggccaccaaggcggcccgcaagagcgcgcccgccaccggcggcgtgaagaagccgcac 23089329
Query: 256 cgctacaggcccgggaccgtcgcgcttcgagaaatccgtcgttaccaaaagtccacggag 315
|||||| ||||||| || || || || || || ||||| || ||||| ||||||||||||
Sbjct: 23089328 cgctactggcccggcacggtggccctgcgcgagatccggcgctaccagaagtccacggag 23089269
Query: 316 cttctgatccggaagctgcccttccagaggttggtgagggagatcgcccaggatttcaaa 375
|| |||||||| |||||||| |||||| || ||||| | |||||||| ||||| |||||
Sbjct: 23089268 ctgctgatccgcaagctgccgttccagcggctggtgcgcgagatcgcgcaggacttcaag 23089209
Query: 376 actgacttgaggttccagagcgccgccattggtgcgcttcaggaggctagtgaagcgtac 435
|| ||| || | ||||||||| | ||| | ||||| |||||||| | || || |||
Sbjct: 23089208 accgacctgcgcttccagagctcggccgtgatggcgctgcaggaggcgtgcgaggcctac 23089149
Query: 436 ctggtgggtttatttgaagataccaatctgtgtgccatccacgctaagagagtcaccatc 495
|||||||| | || || || ||||| ||||||||||||||||| ||| | |||||||||
Sbjct: 23089148 ctggtggggctcttcgaggacaccaacctgtgtgccatccacgccaagcgcgtcaccatc 23089089
Query: 496 atgcccaaagacatccagttggctcgccg 524
|||||||| ||||||||| ||||||||||
Sbjct: 23089088 atgcccaaggacatccagctggctcgccg 23089060
Score = 176 bits (89), Expect = 2e-41
Identities = 314/389 (80%)
Strand = Plus / Minus
Query: 136 atggcccgaaccaagcagactgctcgtaagtccacgggtgggaaagcgccccgcaaacag 195
||||| || ||||||||||| ||||| |||||||| || || || ||||| ||||| |||
Sbjct: 22080010 atggctcgtaccaagcagaccgctcgcaagtccaccggcggcaaggcgccgcgcaagcag 22079951
Query: 196 ctggccactaaagctgccaggaaaagcgctccctctaccggcggggtgaaaaaacctcat 255
|||||||| || || ||| | || ||||| ||| | |||||||| ||||| || || ||
Sbjct: 22079950 ctggccaccaaggcggcccgcaagagcgcgcccgccaccggcggcgtgaagaagccgcac 22079891
Query: 256 cgctacaggcccgggaccgtcgcgcttcgagaaatccgtcgttaccaaaagtccacggag 315
|||||| ||||||| || || || || || || ||||| || ||||| ||||||||||||
Sbjct: 22079890 cgctaccggcccggcacggtggccctgcgcgagatccggcgctaccagaagtccacggag 22079831
Query: 316 cttctgatccggaagctgcccttccagaggttggtgagggagatcgcccaggatttcaaa 375
|| |||||||| |||||||| |||||| || ||||| | |||||||| ||||| |||||
Sbjct: 22079830 ctgctgatccgcaagctgccgttccagcggctggtgcgcgagatcgcgcaggacttcaag 22079771
Query: 376 actgacttgaggttccagagcgccgccattggtgcgcttcaggaggctagtgaagcgtac 435
|| ||| || | ||||||||| | ||| | ||||| |||||||| | || || |||
Sbjct: 22079770 acggacctgcgcttccagagctcggccgtgatggcgctgcaggaggcgtgcgaggcctac 22079711
Query: 436 ctggtgggtttatttgaagataccaatctgtgtgccatccacgctaagagagtcaccatc 495
|||||||| | || || || ||||| ||||| ||||||||||| ||| | |||||||||
Sbjct: 22079710 ctggtggggctcttcgaggacaccaacctgtgcgccatccacgccaagcgcgtcaccatc 22079651
Query: 496 atgcccaaagacatccagttggctcgccg 524
|||||||| ||||||||| ||||||||||
Sbjct: 22079650 atgcccaaggacatccagctggctcgccg 22079622
Score = 168 bits (85), Expect = 4e-39
Identities = 304/377 (80%)
Strand = Plus / Minus
Query: 148 aagcagactgctcgtaagtccacgggtgggaaagcgccccgcaaacagctggccactaaa 207
|||||||| ||||| |||||||| || || || ||||| ||||| ||||||||||| ||
Sbjct: 23187070 aagcagaccgctcgcaagtccaccggcggcaaggcgccgcgcaagcagctggccaccaag 23187011
Query: 208 gctgccaggaaaagcgctccctctaccggcggggtgaaaaaacctcatcgctacaggccc 267
|| ||| | || ||||| ||| | |||||||| ||||| || || || |||||| |||||
Sbjct: 23187010 gcggcccgcaagagcgcgcccgccaccggcggcgtgaagaagccgcaccgctaccggccc 23186951
Query: 268 gggaccgtcgcgcttcgagaaatccgtcgttaccaaaagtccacggagcttctgatccgg 327
|| || || || || || || ||||| || ||||| |||||||||||||| ||||||||
Sbjct: 23186950 ggcacggtggccctgcgcgagatccggcgctaccagaagtccacggagctgctgatccgc 23186891
Query: 328 aagctgcccttccagaggttggtgagggagatcgcccaggatttcaaaactgacttgagg 387
|||||||| |||||| || ||||| | |||||||| ||||| ||||| || ||| || |
Sbjct: 23186890 aagctgccgttccagcggctggtgcgcgagatcgcgcaggacttcaagacggacctgcgc 23186831
Query: 388 ttccagagcgccgccattggtgcgcttcaggaggctagtgaagcgtacctggtgggttta 447
||||||||| | ||| | ||||| |||||||| | || || ||||||||||| |
Sbjct: 23186830 ttccagagctcggccgtgatggcgctgcaggaggcgtgcgaggcctacctggtggggctc 23186771
Query: 448 tttgaagataccaatctgtgtgccatccacgctaagagagtcaccatcatgcccaaagac 507
|| || || ||||| ||||| ||||||||||| ||| | ||||||||||||||||| |||
Sbjct: 23186770 ttcgaggacaccaacctgtgcgccatccacgccaagcgcgtcaccatcatgcccaaggac 23186711
Query: 508 atccagttggctcgccg 524
|||||| ||||||||||
Sbjct: 23186710 atccagctggctcgccg 23186694
Score = 167 bits (84), Expect = 2e-38
Identities = 331/412 (80%), Gaps = 1/412 (0%)
Strand = Plus / Minus
Query: 136 atggcccgaaccaagcagactgctcgtaagtccacgggtgggaaag-cgccccgcaaaca 194
||||| || ||||||||||| ||||| |||||||| || || || | |||| ||||| ||
Sbjct: 23179687 atggctcgtaccaagcagaccgctcgcaagtccaccggcggcaagggcgccgcgcaagca 23179628
Query: 195 gctggccactaaagctgccaggaaaagcgctccctctaccggcggggtgaaaaaacctca 254
||||||||| || || ||| | || ||||| ||| | |||||||| ||||| || || ||
Sbjct: 23179627 gctggccaccaaggcggcccgcaagagcgcgcccgccaccggcggcgtgaagaagccgca 23179568
Query: 255 tcgctacaggcccgggaccgtcgcgcttcgagaaatccgtcgttaccaaaagtccacgga 314
|||||| ||||||| || || || || || || ||||| || ||||| |||||||||||
Sbjct: 23179567 ccgctaccggcccggcacggtggccctgcgcgagatccggcgctaccagaagtccacgga 23179508
Query: 315 gcttctgatccggaagctgcccttccagaggttggtgagggagatcgcccaggatttcaa 374
||| |||||||| |||||||| |||||| || ||||| | |||||||| ||||| |||||
Sbjct: 23179507 gctgctgatccgcaagctgccgttccagcggctggtgcgcgagatcgcgcaggacttcaa 23179448
Query: 375 aactgacttgaggttccagagcgccgccattggtgcgcttcaggaggctagtgaagcgta 434
|| ||| || | ||||||||| | ||| | ||||| |||||||| | || || ||
Sbjct: 23179447 gacggacctgcgcttccagagctcggccgtgatggcgctgcaggaggcgtgcgaggccta 23179388
Query: 435 cctggtgggtttatttgaagataccaatctgtgtgccatccacgctaagagagtcaccat 494
||||||||| | || || || ||||| ||||| ||||||||||| ||| | ||||||||
Sbjct: 23179387 cctggtggggctcttcgaggacaccaacctgtgcgccatccacgccaagcgcgtcaccat 23179328
Query: 495 catgcccaaagacatccagttggctcgccggatacggggagagagagcttaa 546
||||||||| ||||||||| |||||||||| || || || || |||||||||
Sbjct: 23179327 catgcccaaggacatccagctggctcgccgcatccgcggggaaagagcttaa 23179276
Score = 103 bits (52), Expect = 2e-19
Identities = 229/288 (79%)
Strand = Plus / Plus
Query: 226 ccctctaccggcggggtgaaaaaacctcatcgctacaggcccgggaccgtcgcgcttcga 285
|||||||| || |||||||| ||||||||||| |||||||| || ||||| || || ||
Sbjct: 5756374 ccctctactggaggggtgaagaaacctcatcgttacaggcctggtaccgtggcactccgt 5756433
Query: 286 gaaatccgtcgttaccaaaagtccacggagcttctgatccggaagctgcccttccagagg 345
||||| | ||||| || |||||||| || |||||||| || ||||| ||||||||| |
Sbjct: 5756434 gaaattagacgttatcagaagtccactgaacttctgattcgcaagcttcccttccagcgt 5756493
Query: 346 ttggtgagggagatcgcccaggatttcaaaactgacttgaggttccagagcgccgccatt 405
||||| |||| || || ||||| |||||||| || || | |||||||| || || |||
Sbjct: 5756494 ctggtgcgggaaattgctcaggacttcaaaacagatctgcgcttccagagtgcagctatt 5756553
Query: 406 ggtgcgcttcaggaggctagtgaagcgtacctggtgggtttatttgaagataccaatctg 465
||||| | |||||||| ||||| || || ||||| || | |||||||| ||||| |||
Sbjct: 5756554 ggtgctttgcaggaggcaagtgaggcctatctggttggcctttttgaagacaccaacctg 5756613
Query: 466 tgtgccatccacgctaagagagtcaccatcatgcccaaagacatccag 513
||||| ||||| || || | || || || ||||| ||||||||||||
Sbjct: 5756614 tgtgctatccatgccaaacgtgtaacaattatgccaaaagacatccag 5756661
>Sscrofa_Chr09
|| Length = 153670197
Score = 149 bits (75), Expect = 4e-33
Identities = 108/119 (90%)
Strand = Plus / Minus
Query: 729 ctcaggagtgacaagttgctaatatgcagaagggatgggtgatatttcttgcttctcatg 788
||||||||||||| ||||||||||||||||||| ||| |||||||||||||||| |||||
Sbjct: 22972573 ctcaggagtgacacgttgctaatatgcagaaggaatgagtgatatttcttgcttatcatg 22972514
Query: 789 atgcatgtttctgtatgttaatgacttgttgggtagctattaaggtactagaattgata 847
||||||||||||||| | | || | ||||||||||| |||||||| |||||||||||||
Sbjct: 22972513 atgcatgtttctgtacggttataatttgttgggtagttattaaggcactagaattgata 22972455
>Sscrofa_Chr04
|| Length = 143465943
Score = 137 bits (69), Expect = 1e-29
Identities = 237/293 (80%)
Strand = Plus / Minus
Query: 232 accggcggggtgaaaaaacctcatcgctacaggcccgggaccgtcgcgcttcgagaaatc 291
|||||||| ||||| || || || |||||| |||| || ||||| || || || || |||
Sbjct: 108522382 accggcggcgtgaagaagccccaccgctaccggccgggcaccgtggccctgcgggagatc 108522323
Query: 292 cgtcgttaccaaaagtccacggagcttctgatccggaagctgcccttccagaggttggtg 351
|| || ||||| ||||| || ||||| |||||||| ||||||||||||||| | |||||
Sbjct: 108522322 cggcgctaccagaagtcgaccgagctgctgatccgcaagctgcccttccagcgcctggtg 108522263
Query: 352 agggagatcgcccaggatttcaaaactgacttgaggttccagagcgccgccattggtgcg 411
| |||||||| ||||| ||||| || ||| || | ||||||||| | ||| | |||
Sbjct: 108522262 cgcgagatcgcgcaggacttcaagacggacctgcgcttccagagctcggccgtgatggcg 108522203
Query: 412 cttcaggaggctagtgaagcgtacctggtgggtttatttgaagataccaatctgtgtgcc 471
|| |||||||| || || || ||||||||||| | |||||||| || || |||||||||
Sbjct: 108522202 ctgcaggaggcgagcgaggcctacctggtggggctgtttgaagacacgaacctgtgtgcc 108522143
Query: 472 atccacgctaagagagtcaccatcatgcccaaagacatccagttggctcgccg 524
|||||||| ||| | || |||||||||||||||||||||||| |||| |||||
Sbjct: 108522142 atccacgccaagcgcgtgaccatcatgcccaaagacatccagctggcccgccg 108522090
Score = 137 bits (69), Expect = 1e-29
Identities = 237/293 (80%)
Strand = Plus / Minus
Query: 232 accggcggggtgaaaaaacctcatcgctacaggcccgggaccgtcgcgcttcgagaaatc 291
|||||||| ||||| || || || |||||| |||| || ||||| || || || || |||
Sbjct: 108799627 accggcggcgtgaagaagccccaccgctaccggccgggcaccgtggccctgcgggagatc 108799568
Query: 292 cgtcgttaccaaaagtccacggagcttctgatccggaagctgcccttccagaggttggtg 351
|| || ||||| ||||| || ||||| |||||||| ||||||||||||||| | |||||
Sbjct: 108799567 cggcgctaccagaagtcgaccgagctgctgatccgcaagctgcccttccagcgcctggtg 108799508
Query: 352 agggagatcgcccaggatttcaaaactgacttgaggttccagagcgccgccattggtgcg 411
| |||||||| ||||| ||||| || ||| || | ||||||||| | ||| | |||
Sbjct: 108799507 cgcgagatcgcgcaggacttcaagacggacctgcgcttccagagctcggccgtgatggcg 108799448
Query: 412 cttcaggaggctagtgaagcgtacctggtgggtttatttgaagataccaatctgtgtgcc 471
|| |||||||| || || || ||||||||||| | |||||||| || || |||||||||
Sbjct: 108799447 ctgcaggaggcgagcgaggcctacctggtggggctgtttgaagacacgaacctgtgtgcc 108799388
Query: 472 atccacgctaagagagtcaccatcatgcccaaagacatccagttggctcgccg 524
|||||||| ||| | || |||||||||||||||||||||||| |||| |||||
Sbjct: 108799387 atccacgccaagcgcgtgaccatcatgcccaaagacatccagctggcccgccg 108799335
Score = 137 bits (69), Expect = 1e-29
Identities = 237/293 (80%)
Strand = Plus / Plus
Query: 232 accggcggggtgaaaaaacctcatcgctacaggcccgggaccgtcgcgcttcgagaaatc 291
|||||||| ||||| || || || |||||| |||| || ||||| || || || || |||
Sbjct: 108826607 accggcggcgtgaagaagccccaccgctaccggccgggcaccgtggccctgcgggagatc 108826666
Query: 292 cgtcgttaccaaaagtccacggagcttctgatccggaagctgcccttccagaggttggtg 351
|| || ||||| ||||| || ||||| |||||||| ||||||||||||||| | |||||
Sbjct: 108826667 cggcgctaccagaagtcgaccgagctgctgatccgcaagctgcccttccagcgcctggtg 108826726
Query: 352 agggagatcgcccaggatttcaaaactgacttgaggttccagagcgccgccattggtgcg 411
| |||||||| ||||| ||||| || ||| || | ||||||||| | ||| | |||
Sbjct: 108826727 cgcgagatcgcgcaggacttcaagacggacctgcgcttccagagctcggccgtgatggcg 108826786
Query: 412 cttcaggaggctagtgaagcgtacctggtgggtttatttgaagataccaatctgtgtgcc 471
|| |||||||| || || || ||||||||||| | |||||||| || || |||||||||
Sbjct: 108826787 ctgcaggaggcgagcgaggcctacctggtggggctgtttgaagacacgaacctgtgtgcc 108826846
Query: 472 atccacgctaagagagtcaccatcatgcccaaagacatccagttggctcgccg 524
|||||||| ||| | || |||||||||||||||||||||||| |||| |||||
Sbjct: 108826847 atccacgccaagcgcgtgaccatcatgcccaaagacatccagctggcccgccg 108826899
>Sscrofa_Chr01
|| Length = 315321322
Score = 113 bits (57), Expect = 2e-22
Identities = 81/89 (91%)
Strand = Plus / Minus
Query: 843 tgataaatgtgtacagggtccttttgcaataaaactggttatgacttgatccaagtgttt 902
|||||||||||||||||||||||||||||| || || ||||||||||||| ||| |||||
Sbjct: 199949814 tgataaatgtgtacagggtccttttgcaatgaagcttgttatgacttgatgcaattgttt 199949755
Query: 903 aacaattggggctgttaagtctgaccata 931
||||||||||||| ||| |||| ||||||
Sbjct: 199949754 aacaattggggcttttacgtctcaccata 199949726
>Sscrofa_Chr03
|| Length = 144787322
Score = 95.6 bits (48), Expect = 5e-17
Identities = 202/252 (80%), Gaps = 1/252 (0%)
Strand = Plus / Plus
Query: 226 ccctctaccggcggggtgaaaaaacctcatcgctacaggcccgggaccgtcgcgcttcga 285
|||||||| || |||||||| ||||||||||| |||||||| || ||||| || || ||
Sbjct: 106880436 ccctctactggaggggtgaagaaacctcatcgttacaggcctggtaccgtggcactccgt 106880495
Query: 286 gaaatccgtcgttaccaaaagtccacggagcttctgatccggaagctgcccttccagag- 344
||||| | ||||| || |||||||| || |||||||| || ||||| ||||||||| |
Sbjct: 106880496 gaaattagacgttatcagaagtccactgaacttctgattcgcaagcttcccttccagcgt 106880555
Query: 345 gttggtgagggagatcgcccaggatttcaaaactgacttgaggttccagagcgccgccat 404
|||||| |||| || || ||||| |||||||| || || | |||||||| || || ||
Sbjct: 106880556 cttggtgcgggaaattgctcaggacttcaaaacagatatgcgcttccagagtgcagctat 106880615
Query: 405 tggtgcgcttcaggaggctagtgaagcgtacctggtgggtttatttgaagataccaatct 464
|||||| | |||||||| ||||| || || ||||| || | |||||||| ||||| ||
Sbjct: 106880616 tggtgctttgcaggaggcaagtgaggcctatctggttggcctttttgaagacaccaacct 106880675
Query: 465 gtgtgccatcca 476
|||||| |||||
Sbjct: 106880676 gtgtgctatcca 106880687
>Sscrofa_Chr15
|| Length = 157681621
Score = 60.0 bits (30), Expect = 3e-06
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 321 gatccggaagctgcccttccagaggttggtgagggagatcgcccaggatttcaaaactga 380
||||| ||||| ||| ||||||||||||| ||||||| || |||||| |||||||||||
Sbjct: 153929629 gatccagaagcggcctttccagaggttggggagggagttcacccagggcttcaaaactga 153929570
Query: 381 ct 382
||
Sbjct: 153929569 ct 153929568
Score = 60.0 bits (30), Expect = 3e-06
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 321 gatccggaagctgcccttccagaggttggtgagggagatcgcccaggatttcaaaactga 380
||||| ||||| ||| ||||||||||||| ||||||| || |||||| |||||||||||
Sbjct: 154371033 gatccagaagcggcctttccagaggttggggagggagttcacccagggcttcaaaactga 154371092
Query: 381 ct 382
||
Sbjct: 154371093 ct 154371094
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,939,765
Number of extensions: 176
Number of successful extensions: 176
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 24
Length of query: 1045
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1024
Effective length of database: 2,808,413,156
Effective search space: 2875815071744
Effective search space used: 2875815071744
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)