Animal-Genome cDNA 20110601C-001795


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001795
         (1045 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001014411.1| histone H3.3 [Bos taurus].                        265   7e-71
Alignment   gi|NP_001229500.1| H3 histone, family 3B [Bos taurus].               265   7e-71
Alignment   gi|XP_002688969.1| PREDICTED: histone H3.3B-like [Bos taurus].       261   9e-70
Alignment   gi|XP_002684244.1| PREDICTED: H3 histone, family 3A [Bos taurus].    261   9e-70
Alignment   gi|XP_002688445.1| PREDICTED: histone H3.3B-like [Bos taurus].       260   2e-69
Alignment   gi|NP_001092840.1| H3 histone, family 3C [Bos taurus].               258   5e-69
Alignment   gi|NP_001160041.1| histone H3.2 [Bos taurus].                        258   5e-69
Alignment   gi|XP_002686103.1| PREDICTED: histone cluster 2, H3c2-like [Bos...   258   5e-69
Alignment   gi|XP_002686099.1| PREDICTED: histone cluster 2, H3c2-like [Bos...   258   5e-69
Alignment   gi|XP_001249529.1| PREDICTED: H3 histone, family 3A [Bos taurus].    258   5e-69

>ref|NP_001014411.1| histone H3.3 [Bos taurus].
          Length = 136

 Score =  265 bits (676), Expect = 7e-71
 Identities = 136/136 (100%), Positives = 136/136 (100%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 496 MPKDIQLARRIRGERA 543
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


>ref|NP_001229500.1| H3 histone, family 3B [Bos taurus].
          Length = 136

 Score =  265 bits (676), Expect = 7e-71
 Identities = 136/136 (100%), Positives = 136/136 (100%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 496 MPKDIQLARRIRGERA 543
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


>ref|XP_002688969.1| PREDICTED: histone H3.3B-like [Bos taurus].
          Length = 136

 Score =  261 bits (666), Expect = 9e-70
 Identities = 134/136 (98%), Positives = 135/136 (99%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTA KSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTASKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 496 MPKDIQLARRIRGERA 543
           +PKDIQLARRIRGERA
Sbjct: 121 IPKDIQLARRIRGERA 136


>ref|XP_002684244.1| PREDICTED: H3 histone, family 3A [Bos taurus].
          Length = 136

 Score =  261 bits (666), Expect = 9e-70
 Identities = 134/136 (98%), Positives = 135/136 (99%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTA KSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTASKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 496 MPKDIQLARRIRGERA 543
           +PKDIQLARRIRGERA
Sbjct: 121 IPKDIQLARRIRGERA 136


>ref|XP_002688445.1| PREDICTED: histone H3.3B-like [Bos taurus].
          Length = 136

 Score =  260 bits (664), Expect = 2e-69
 Identities = 133/136 (97%), Positives = 135/136 (99%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTARKSTGGKAPRKQLATKAARK+APS GGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKTAPSIGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQD+KTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDYKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 496 MPKDIQLARRIRGERA 543
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


>ref|NP_001092840.1| H3 histone, family 3C [Bos taurus].
          Length = 136

 Score =  258 bits (660), Expect = 5e-69
 Identities = 131/136 (96%), Positives = 135/136 (99%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTARKSTGGKAPRKQL TKAARKSAPSTGG+KKPHRYRPGTVALREIRR+QKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLVTKAARKSAPSTGGMKKPHRYRPGTVALREIRRHQKSTE 60

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVT+
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTV 120

Query: 496 MPKDIQLARRIRGERA 543
           MP+DIQLARRIRGERA
Sbjct: 121 MPRDIQLARRIRGERA 136


>ref|NP_001160041.1| histone H3.2 [Bos taurus].
          Length = 136

 Score =  258 bits (660), Expect = 5e-69
 Identities = 132/136 (97%), Positives = 135/136 (99%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 496 MPKDIQLARRIRGERA 543
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


>ref|XP_002686103.1| PREDICTED: histone cluster 2, H3c2-like [Bos taurus].
          Length = 136

 Score =  258 bits (660), Expect = 5e-69
 Identities = 132/136 (97%), Positives = 135/136 (99%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 496 MPKDIQLARRIRGERA 543
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


>ref|XP_002686099.1| PREDICTED: histone cluster 2, H3c2-like [Bos taurus].
          Length = 136

 Score =  258 bits (660), Expect = 5e-69
 Identities = 132/136 (97%), Positives = 135/136 (99%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 496 MPKDIQLARRIRGERA 543
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


>ref|XP_001249529.1| PREDICTED: H3 histone, family 3A [Bos taurus].
          Length = 136

 Score =  258 bits (660), Expect = 5e-69
 Identities = 132/136 (97%), Positives = 134/136 (98%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTARKSTGGKAPRKQL TKAARK+APS GGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLTTKAARKTAPSIGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQD+KTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDYKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 496 MPKDIQLARRIRGERA 543
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,272,357
Number of extensions: 904790
Number of successful extensions: 2517
Number of sequences better than 1.0e-05: 59
Number of HSP's gapped: 2499
Number of HSP's successfully gapped: 59
Length of query: 348
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 245
Effective length of database: 14,273,310
Effective search space: 3496960950
Effective search space used: 3496960950
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001795
         (1045 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_858804.1| PREDICTED: similar to H3 histone, family 3B iso...   265   7e-71
Alignment   gi|XP_533123.2| PREDICTED: similar to H3 histone, family 3B iso...   265   7e-71
Alignment   gi|XP_537232.1| PREDICTED: similar to H3 histone, family 3B iso...   265   7e-71
Alignment   gi|XP_859248.1| PREDICTED: similar to histone 1, H2ai (predicte...   259   4e-69
Alignment   gi|XP_537880.2| PREDICTED: similar to histone 1, H2ai (predicte...   259   4e-69
Alignment   gi|XP_540290.1| PREDICTED: similar to H3 histone, family 2 isof...   258   5e-69
Alignment   gi|XP_540285.1| PREDICTED: similar to H3 histone, family 2 isof...   258   5e-69
Alignment   gi|XP_850744.1| PREDICTED: similar to CG31613-PA [Canis familia...   258   5e-69
Alignment   gi|XP_854287.1| PREDICTED: similar to histone 1, H2ai (predicte...   256   2e-68
Alignment   gi|XP_545428.1| PREDICTED: similar to histone 1, H2ai (predicte...   256   2e-68

>ref|XP_858804.1| PREDICTED: similar to H3 histone, family 3B isoform 4 [Canis
           familiaris].
          Length = 136

 Score =  265 bits (676), Expect = 7e-71
 Identities = 136/136 (100%), Positives = 136/136 (100%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 496 MPKDIQLARRIRGERA 543
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


>ref|XP_533123.2| PREDICTED: similar to H3 histone, family 3B isoform 2 [Canis
           familiaris].
          Length = 136

 Score =  265 bits (676), Expect = 7e-71
 Identities = 136/136 (100%), Positives = 136/136 (100%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 496 MPKDIQLARRIRGERA 543
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


>ref|XP_537232.1| PREDICTED: similar to H3 histone, family 3B isoform 1 [Canis
           familiaris].
          Length = 136

 Score =  265 bits (676), Expect = 7e-71
 Identities = 136/136 (100%), Positives = 136/136 (100%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 496 MPKDIQLARRIRGERA 543
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


>ref|XP_859248.1| PREDICTED: similar to histone 1, H2ai (predicted) isoform 3 [Canis
           familiaris].
          Length = 259

 Score =  259 bits (661), Expect = 4e-69
 Identities = 133/140 (95%), Positives = 137/140 (97%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 496 MPKDIQLARRIRGERA*VKA 555
           MPKDIQLARRIRGERA VK+
Sbjct: 121 MPKDIQLARRIRGERAEVKS 140


>ref|XP_537880.2| PREDICTED: similar to histone 1, H2ai (predicted) isoform 1 [Canis
           familiaris].
          Length = 259

 Score =  259 bits (661), Expect = 4e-69
 Identities = 133/140 (95%), Positives = 137/140 (97%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 496 MPKDIQLARRIRGERA*VKA 555
           MPKDIQLARRIRGERA VK+
Sbjct: 121 MPKDIQLARRIRGERAEVKS 140


>ref|XP_540290.1| PREDICTED: similar to H3 histone, family 2 isoform 2 [Canis
           familiaris].
          Length = 174

 Score =  258 bits (660), Expect = 5e-69
 Identities = 132/136 (97%), Positives = 135/136 (99%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 39  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 98

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 99  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 158

Query: 496 MPKDIQLARRIRGERA 543
           MPKDIQLARRIRGERA
Sbjct: 159 MPKDIQLARRIRGERA 174


>ref|XP_540285.1| PREDICTED: similar to H3 histone, family 2 isoform 2 [Canis
           familiaris].
          Length = 174

 Score =  258 bits (660), Expect = 5e-69
 Identities = 132/136 (97%), Positives = 135/136 (99%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 39  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 98

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 99  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 158

Query: 496 MPKDIQLARRIRGERA 543
           MPKDIQLARRIRGERA
Sbjct: 159 MPKDIQLARRIRGERA 174


>ref|XP_850744.1| PREDICTED: similar to CG31613-PA [Canis familiaris].
          Length = 136

 Score =  258 bits (660), Expect = 5e-69
 Identities = 132/136 (97%), Positives = 135/136 (99%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 496 MPKDIQLARRIRGERA 543
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


>ref|XP_854287.1| PREDICTED: similar to histone 1, H2ai (predicted) [Canis
           familiaris].
          Length = 156

 Score =  256 bits (655), Expect = 2e-68
 Identities = 131/136 (96%), Positives = 134/136 (98%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 21  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 80

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 81  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 140

Query: 496 MPKDIQLARRIRGERA 543
           MPKDIQLARRIRGERA
Sbjct: 141 MPKDIQLARRIRGERA 156


>ref|XP_545428.1| PREDICTED: similar to histone 1, H2ai (predicted) [Canis
           familiaris].
          Length = 136

 Score =  256 bits (655), Expect = 2e-68
 Identities = 131/136 (96%), Positives = 134/136 (98%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 496 MPKDIQLARRIRGERA 543
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,758,158
Number of extensions: 914096
Number of successful extensions: 2534
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 2530
Number of HSP's successfully gapped: 29
Length of query: 348
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 244
Effective length of database: 15,407,560
Effective search space: 3759444640
Effective search space used: 3759444640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001795
         (1045 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_002098.1| histone H3.3 [Homo sapiens].                         265   7e-71
Alignment   gi|NP_005315.1| histone H3.3 [Homo sapiens].                         265   7e-71
Alignment   gi|NP_001005464.1| histone H3.2 [Homo sapiens].                      258   5e-69
Alignment   gi|NP_066403.2| histone H3.2 [Homo sapiens].                         258   5e-69
Alignment   gi|NP_001116847.1| histone H3.2 [Homo sapiens].                      258   5e-69
Alignment   gi|NP_003521.2| histone cluster 1, H3d [Homo sapiens].               256   2e-68
Alignment   gi|NP_066298.1| histone H3.1 [Homo sapiens].                         256   2e-68
Alignment   gi|NP_003527.1| histone H3.1 [Homo sapiens].                         256   2e-68
Alignment   gi|NP_003528.1| histone H3.1 [Homo sapiens].                         256   2e-68
Alignment   gi|NP_003526.1| histone H3.1 [Homo sapiens].                         256   2e-68

>ref|NP_002098.1| histone H3.3 [Homo sapiens].
          Length = 136

 Score =  265 bits (676), Expect = 7e-71
 Identities = 136/136 (100%), Positives = 136/136 (100%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 496 MPKDIQLARRIRGERA 543
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


>ref|NP_005315.1| histone H3.3 [Homo sapiens].
          Length = 136

 Score =  265 bits (676), Expect = 7e-71
 Identities = 136/136 (100%), Positives = 136/136 (100%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 496 MPKDIQLARRIRGERA 543
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


>ref|NP_001005464.1| histone H3.2 [Homo sapiens].
          Length = 136

 Score =  258 bits (660), Expect = 5e-69
 Identities = 132/136 (97%), Positives = 135/136 (99%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 496 MPKDIQLARRIRGERA 543
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


>ref|NP_066403.2| histone H3.2 [Homo sapiens].
          Length = 136

 Score =  258 bits (660), Expect = 5e-69
 Identities = 132/136 (97%), Positives = 135/136 (99%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 496 MPKDIQLARRIRGERA 543
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


>ref|NP_001116847.1| histone H3.2 [Homo sapiens].
          Length = 136

 Score =  258 bits (660), Expect = 5e-69
 Identities = 132/136 (97%), Positives = 135/136 (99%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 496 MPKDIQLARRIRGERA 543
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


>ref|NP_003521.2| histone cluster 1, H3d [Homo sapiens].
          Length = 136

 Score =  256 bits (655), Expect = 2e-68
 Identities = 131/136 (96%), Positives = 134/136 (98%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 496 MPKDIQLARRIRGERA 543
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


>ref|NP_066298.1| histone H3.1 [Homo sapiens].
          Length = 136

 Score =  256 bits (655), Expect = 2e-68
 Identities = 131/136 (96%), Positives = 134/136 (98%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 496 MPKDIQLARRIRGERA 543
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


>ref|NP_003527.1| histone H3.1 [Homo sapiens].
          Length = 136

 Score =  256 bits (655), Expect = 2e-68
 Identities = 131/136 (96%), Positives = 134/136 (98%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 496 MPKDIQLARRIRGERA 543
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


>ref|NP_003528.1| histone H3.1 [Homo sapiens].
          Length = 136

 Score =  256 bits (655), Expect = 2e-68
 Identities = 131/136 (96%), Positives = 134/136 (98%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 496 MPKDIQLARRIRGERA 543
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


>ref|NP_003526.1| histone H3.1 [Homo sapiens].
          Length = 136

 Score =  256 bits (655), Expect = 2e-68
 Identities = 131/136 (96%), Positives = 134/136 (98%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 496 MPKDIQLARRIRGERA 543
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,067,197
Number of extensions: 893162
Number of successful extensions: 2376
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 2373
Number of HSP's successfully gapped: 19
Length of query: 348
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 245
Effective length of database: 14,901,872
Effective search space: 3650958640
Effective search space used: 3650958640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001795
         (1045 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_032237.1| histone H3.3 [Mus musculus].                         265   6e-71
Alignment   gi|NP_032236.1| histone H3.3 [Mus musculus].                         265   6e-71
Alignment   gi|XP_003085943.1| PREDICTED: histone H3.3-like [Mus musculus].      263   1e-70
Alignment   gi|XP_001477409.1| PREDICTED: histone H3.3-like isoform 1 [Mus ...   261   6e-70
Alignment   gi|XP_894986.1| PREDICTED: histone H3.3-like [Mus musculus].         260   1e-69
Alignment   gi|XP_003086287.1| PREDICTED: histone H3.3-like [Mus musculus].      259   2e-69
Alignment   gi|NP_473386.1| histone H3.2 [Mus musculus].                         258   4e-69
Alignment   gi|NP_038576.1| histone H3.2 [Mus musculus].                         258   4e-69
Alignment   gi|NP_835587.1| histone H3.2 [Mus musculus].                         258   4e-69
Alignment   gi|NP_835512.1| histone H3.2 [Mus musculus].                         258   4e-69

>ref|NP_032237.1| histone H3.3 [Mus musculus].
          Length = 136

 Score =  265 bits (676), Expect = 6e-71
 Identities = 136/136 (100%), Positives = 136/136 (100%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 496 MPKDIQLARRIRGERA 543
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


>ref|NP_032236.1| histone H3.3 [Mus musculus].
          Length = 136

 Score =  265 bits (676), Expect = 6e-71
 Identities = 136/136 (100%), Positives = 136/136 (100%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 496 MPKDIQLARRIRGERA 543
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


>ref|XP_003085943.1| PREDICTED: histone H3.3-like [Mus musculus].
          Length = 136

 Score =  263 bits (673), Expect = 1e-70
 Identities = 135/136 (99%), Positives = 136/136 (100%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQK+TE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKATE 60

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 496 MPKDIQLARRIRGERA 543
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


>ref|XP_001477409.1| PREDICTED: histone H3.3-like isoform 1 [Mus musculus].
          Length = 136

 Score =  261 bits (667), Expect = 6e-70
 Identities = 134/136 (98%), Positives = 135/136 (99%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTARKSTGGKAPRKQLATKAARKSAPS GGVKKPHRYRPGTVALREIRRYQK+TE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSIGGVKKPHRYRPGTVALREIRRYQKATE 60

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 496 MPKDIQLARRIRGERA 543
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


>ref|XP_894986.1| PREDICTED: histone H3.3-like [Mus musculus].
          Length = 136

 Score =  260 bits (665), Expect = 1e-69
 Identities = 134/136 (98%), Positives = 134/136 (98%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MA TKQTARKSTGGKAPRKQLATKA RKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MALTKQTARKSTGGKAPRKQLATKATRKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 496 MPKDIQLARRIRGERA 543
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


>ref|XP_003086287.1| PREDICTED: histone H3.3-like [Mus musculus].
          Length = 136

 Score =  259 bits (663), Expect = 2e-69
 Identities = 134/136 (98%), Positives = 134/136 (98%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MA TKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MALTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLV EIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVXEIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 496 MPKDIQLARRIRGERA 543
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


>ref|NP_473386.1| histone H3.2 [Mus musculus].
          Length = 136

 Score =  258 bits (660), Expect = 4e-69
 Identities = 132/136 (97%), Positives = 135/136 (99%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 496 MPKDIQLARRIRGERA 543
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


>ref|NP_038576.1| histone H3.2 [Mus musculus].
          Length = 136

 Score =  258 bits (660), Expect = 4e-69
 Identities = 132/136 (97%), Positives = 135/136 (99%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 496 MPKDIQLARRIRGERA 543
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


>ref|NP_835587.1| histone H3.2 [Mus musculus].
          Length = 136

 Score =  258 bits (660), Expect = 4e-69
 Identities = 132/136 (97%), Positives = 135/136 (99%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 496 MPKDIQLARRIRGERA 543
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


>ref|NP_835512.1| histone H3.2 [Mus musculus].
          Length = 136

 Score =  258 bits (660), Expect = 4e-69
 Identities = 132/136 (97%), Positives = 135/136 (99%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 496 MPKDIQLARRIRGERA 543
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,718,483
Number of extensions: 756498
Number of successful extensions: 2001
Number of sequences better than 1.0e-05: 30
Number of HSP's gapped: 1997
Number of HSP's successfully gapped: 30
Length of query: 348
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 246
Effective length of database: 12,553,887
Effective search space: 3088256202
Effective search space used: 3088256202
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001795
         (1045 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_999095.1| histone H3.3 [Sus scrofa].                           265   4e-71
Alignment   gi|XP_003131242.1| PREDICTED: histone H3.3-like [Sus scrofa].        265   4e-71
Alignment   gi|XP_003355255.1| PREDICTED: histone H3.2-like [Sus scrofa].        258   3e-69
Alignment   gi|XP_003125833.1| PREDICTED: histone H3.2 [Sus scrofa].             258   3e-69
Alignment   gi|XP_003356567.1| PREDICTED: hypothetical protein LOC100627410...   258   4e-69
Alignment   gi|XP_003128260.1| PREDICTED: histone H3.1-like [Sus scrofa].        256   1e-68
Alignment   gi|XP_003356602.1| PREDICTED: histone H3.1-like [Sus scrofa].        256   1e-68
Alignment   gi|XP_003356599.1| PREDICTED: histone H3.1-like [Sus scrofa].        256   1e-68
Alignment   gi|XP_001927401.1| PREDICTED: histone H3.1-like [Sus scrofa].        256   1e-68
Alignment   gi|XP_001927414.1| PREDICTED: histone H3.1-like [Sus scrofa].        256   1e-68

>ref|NP_999095.1| histone H3.3 [Sus scrofa].
          Length = 136

 Score =  265 bits (676), Expect = 4e-71
 Identities = 136/136 (100%), Positives = 136/136 (100%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 496 MPKDIQLARRIRGERA 543
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


>ref|XP_003131242.1| PREDICTED: histone H3.3-like [Sus scrofa].
          Length = 136

 Score =  265 bits (676), Expect = 4e-71
 Identities = 136/136 (100%), Positives = 136/136 (100%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 496 MPKDIQLARRIRGERA 543
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


>ref|XP_003355255.1| PREDICTED: histone H3.2-like [Sus scrofa].
          Length = 136

 Score =  258 bits (660), Expect = 3e-69
 Identities = 132/136 (97%), Positives = 135/136 (99%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 496 MPKDIQLARRIRGERA 543
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


>ref|XP_003125833.1| PREDICTED: histone H3.2 [Sus scrofa].
          Length = 136

 Score =  258 bits (660), Expect = 3e-69
 Identities = 132/136 (97%), Positives = 135/136 (99%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 496 MPKDIQLARRIRGERA 543
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


>ref|XP_003356567.1| PREDICTED: hypothetical protein LOC100627410 [Sus scrofa].
          Length = 282

 Score =  258 bits (659), Expect = 4e-69
 Identities = 133/136 (97%), Positives = 134/136 (98%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           +ARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 147 VARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 206

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 207 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 266

Query: 496 MPKDIQLARRIRGERA 543
           MPKDIQLA  IRGERA
Sbjct: 267 MPKDIQLAHCIRGERA 282


>ref|XP_003128260.1| PREDICTED: histone H3.1-like [Sus scrofa].
          Length = 136

 Score =  256 bits (655), Expect = 1e-68
 Identities = 131/136 (96%), Positives = 134/136 (98%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 496 MPKDIQLARRIRGERA 543
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


>ref|XP_003356602.1| PREDICTED: histone H3.1-like [Sus scrofa].
          Length = 136

 Score =  256 bits (655), Expect = 1e-68
 Identities = 131/136 (96%), Positives = 134/136 (98%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 496 MPKDIQLARRIRGERA 543
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


>ref|XP_003356599.1| PREDICTED: histone H3.1-like [Sus scrofa].
          Length = 136

 Score =  256 bits (655), Expect = 1e-68
 Identities = 131/136 (96%), Positives = 134/136 (98%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 496 MPKDIQLARRIRGERA 543
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


>ref|XP_001927401.1| PREDICTED: histone H3.1-like [Sus scrofa].
          Length = 136

 Score =  256 bits (655), Expect = 1e-68
 Identities = 131/136 (96%), Positives = 134/136 (98%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 496 MPKDIQLARRIRGERA 543
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


>ref|XP_001927414.1| PREDICTED: histone H3.1-like [Sus scrofa].
          Length = 136

 Score =  256 bits (655), Expect = 1e-68
 Identities = 131/136 (96%), Positives = 134/136 (98%)
 Frame = +1

Query: 136 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 315
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 316 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 495
           LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 496 MPKDIQLARRIRGERA 543
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,880,624
Number of extensions: 609810
Number of successful extensions: 1546
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 1544
Number of HSP's successfully gapped: 17
Length of query: 348
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 248
Effective length of database: 8,854,232
Effective search space: 2195849536
Effective search space used: 2195849536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001795
         (1045 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr12                                                        1037   0.0  
Sscrofa_Chr07                                                         184   6e-44
Sscrofa_Chr09                                                         149   4e-33
Sscrofa_Chr04                                                         137   1e-29
Sscrofa_Chr01                                                         113   2e-22
Sscrofa_Chr03                                                          96   5e-17
Sscrofa_Chr15                                                          60   3e-06

>Sscrofa_Chr12 
||          Length = 63588571

 Score = 1037 bits (523), Expect = 0.0
 Identities = 567/580 (97%), Gaps = 3/580 (0%)
 Strand = Plus / Plus

                                                                           
Query: 415     caggaggctagtgaagcgtacctggtgggtttatttgaagataccaatctgtgtgccatc 474
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5579820 caggaggctagtgaagcgtacctggtgggtttatttgaagataccaatctgtgtgccatc 5579879

                                                                           
Query: 475     cacgctaagagagtcaccatcatgcccaaagacatccagttggctcgccggatacgggga 534
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5579880 cacgctaagagagtcaccatcatgcccaaagacatccagttggctcgccggatacgggga 5579939

                                                                           
Query: 535     gagagagcttaagtgaaggcagtttttatggtgttttgtagtaaattctgtaaaatactt 594
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5579940 gagagagcttaagtgaaggcagtttttatggtgttttgtagtaaattctgtaaaatactt 5579999

                                                                           
Query: 595     tggtttaatttgtgacnnnnnnngtaagaaattgtttataatatgttgcatttgtactta 654
               ||||||||||||||||       |||||||||||||||||||||||||||||||||||||
Sbjct: 5580000 tggtttaatttgtgactttttttgtaagaaattgtttataatatgttgcatttgtactta 5580059

                                                                           
Query: 655     agtcattccatctttcactcaggatgaatgcgaaaagtgactgttcacagacctcagtga 714
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5580060 agtcattccatctttcactcaggatgaatgcgaaaagtgactgttcacagacctcagtga 5580119

                                                                           
Query: 715     tgtgagcactgttgctcaggagtgacaagttgctaatatgcagaagggatgggtgatatt 774
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5580120 tgtgagcactgttgctcaggagtgacaagttgctaatatgcagaagggatgggtgatatt 5580179

                                                                           
Query: 775     tcttgcttctcatgatgcatgtttctgtatgttaatgacttgttgggtagctattaaggt 834
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5580180 tcttgcttctcatgatgcatgtttctgtatgttaatgacttgttgggtagctattaaggt 5580239

                                                                           
Query: 835     actagaattgataaatgtgtacagggtccttttgcaataaaactggttatgacttgatcc 894
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5580240 actagaattgataaatgtgtacagggtccttttgcaataaaactggttatgacttgatcc 5580299

                                                                           
Query: 895     aagtgtttaacaattggggctgttaagtctgaccatacatcactgtgatagaatgggggg 954
               |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 5580300 aagtgtttaacaattggggctgttaagtctgaccatacatcactgtgatagaat-gtggg 5580358

                                                       
Query: 955     ctttttcaaggggtgaaaaatacaagtcttaaccccagtg 994
               ||||||||| ||||| || ||||||||||||||| |||||
Sbjct: 5580359 ctttttcaa-gggtg-aagatacaagtcttaaccacagtg 5580396



 Score =  317 bits (160), Expect = 7e-84
 Identities = 163/164 (99%)
 Strand = Plus / Plus

                                                                           
Query: 255     tcgctacaggcccgggaccgtcgcgcttcgagaaatccgtcgttaccaaaagtccacgga 314
               ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5579573 tcgctccaggcccgggaccgtcgcgcttcgagaaatccgtcgttaccaaaagtccacgga 5579632

                                                                           
Query: 315     gcttctgatccggaagctgcccttccagaggttggtgagggagatcgcccaggatttcaa 374
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5579633 gcttctgatccggaagctgcccttccagaggttggtgagggagatcgcccaggatttcaa 5579692

                                                           
Query: 375     aactgacttgaggttccagagcgccgccattggtgcgcttcagg 418
               ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5579693 aactgacttgaggttccagagcgccgccattggtgcgcttcagg 5579736



 Score =  278 bits (140), Expect = 6e-72
 Identities = 140/140 (100%)
 Strand = Plus / Plus

                                                                           
Query: 125     ggtaaaagaaaatggcccgaaccaagcagactgctcgtaagtccacgggtgggaaagcgc 184
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5579323 ggtaaaagaaaatggcccgaaccaagcagactgctcgtaagtccacgggtgggaaagcgc 5579382

                                                                           
Query: 185     cccgcaaacagctggccactaaagctgccaggaaaagcgctccctctaccggcggggtga 244
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5579383 cccgcaaacagctggccactaaagctgccaggaaaagcgctccctctaccggcggggtga 5579442

                                   
Query: 245     aaaaacctcatcgctacagg 264
               ||||||||||||||||||||
Sbjct: 5579443 aaaaacctcatcgctacagg 5579462



 Score =  256 bits (129), Expect = 2e-65
 Identities = 129/129 (100%)
 Strand = Plus / Plus

                                                                           
Query: 1       ggagcgcagagcggtttggtcgttcgttggagttgcttcttgctttggttcggcgactgc 60
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5578729 ggagcgcagagcggtttggtcgttcgttggagttgcttcttgctttggttcggcgactgc 5578788

                                                                           
Query: 61      ggctcttcattgggcggcgggagcggcacggcggtgggggaagcggcctcagacttcgct 120
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5578789 ggctcttcattgggcggcgggagcggcacggcggtgggggaagcggcctcagacttcgct 5578848

                        
Query: 121     gttgggtaa 129
               |||||||||
Sbjct: 5578849 gttgggtaa 5578857


>Sscrofa_Chr07 
||          Length = 134764511

 Score =  184 bits (93), Expect = 6e-44
 Identities = 315/389 (80%)
 Strand = Plus / Minus

                                                                            
Query: 136      atggcccgaaccaagcagactgctcgtaagtccacgggtgggaaagcgccccgcaaacag 195
                ||||| || ||||||||||| ||||| |||||||| || || || ||||| ||||| |||
Sbjct: 23089448 atggctcgtaccaagcagacagctcgcaagtccaccggcggcaaggcgccgcgcaagcag 23089389

                                                                            
Query: 196      ctggccactaaagctgccaggaaaagcgctccctctaccggcggggtgaaaaaacctcat 255
                |||||||| || || ||| | || ||||| ||| | |||||||| ||||| || || || 
Sbjct: 23089388 ctggccaccaaggcggcccgcaagagcgcgcccgccaccggcggcgtgaagaagccgcac 23089329

                                                                            
Query: 256      cgctacaggcccgggaccgtcgcgcttcgagaaatccgtcgttaccaaaagtccacggag 315
                |||||| ||||||| || || || || || || ||||| || ||||| ||||||||||||
Sbjct: 23089328 cgctactggcccggcacggtggccctgcgcgagatccggcgctaccagaagtccacggag 23089269

                                                                            
Query: 316      cttctgatccggaagctgcccttccagaggttggtgagggagatcgcccaggatttcaaa 375
                || |||||||| |||||||| |||||| || ||||| | |||||||| ||||| ||||| 
Sbjct: 23089268 ctgctgatccgcaagctgccgttccagcggctggtgcgcgagatcgcgcaggacttcaag 23089209

                                                                            
Query: 376      actgacttgaggttccagagcgccgccattggtgcgcttcaggaggctagtgaagcgtac 435
                || ||| || | ||||||||| | ||| |    ||||| ||||||||  | || || |||
Sbjct: 23089208 accgacctgcgcttccagagctcggccgtgatggcgctgcaggaggcgtgcgaggcctac 23089149

                                                                            
Query: 436      ctggtgggtttatttgaagataccaatctgtgtgccatccacgctaagagagtcaccatc 495
                ||||||||  | || || || ||||| ||||||||||||||||| ||| | |||||||||
Sbjct: 23089148 ctggtggggctcttcgaggacaccaacctgtgtgccatccacgccaagcgcgtcaccatc 23089089

                                             
Query: 496      atgcccaaagacatccagttggctcgccg 524
                |||||||| ||||||||| ||||||||||
Sbjct: 23089088 atgcccaaggacatccagctggctcgccg 23089060



 Score =  176 bits (89), Expect = 2e-41
 Identities = 314/389 (80%)
 Strand = Plus / Minus

                                                                            
Query: 136      atggcccgaaccaagcagactgctcgtaagtccacgggtgggaaagcgccccgcaaacag 195
                ||||| || ||||||||||| ||||| |||||||| || || || ||||| ||||| |||
Sbjct: 22080010 atggctcgtaccaagcagaccgctcgcaagtccaccggcggcaaggcgccgcgcaagcag 22079951

                                                                            
Query: 196      ctggccactaaagctgccaggaaaagcgctccctctaccggcggggtgaaaaaacctcat 255
                |||||||| || || ||| | || ||||| ||| | |||||||| ||||| || || || 
Sbjct: 22079950 ctggccaccaaggcggcccgcaagagcgcgcccgccaccggcggcgtgaagaagccgcac 22079891

                                                                            
Query: 256      cgctacaggcccgggaccgtcgcgcttcgagaaatccgtcgttaccaaaagtccacggag 315
                |||||| ||||||| || || || || || || ||||| || ||||| ||||||||||||
Sbjct: 22079890 cgctaccggcccggcacggtggccctgcgcgagatccggcgctaccagaagtccacggag 22079831

                                                                            
Query: 316      cttctgatccggaagctgcccttccagaggttggtgagggagatcgcccaggatttcaaa 375
                || |||||||| |||||||| |||||| || ||||| | |||||||| ||||| ||||| 
Sbjct: 22079830 ctgctgatccgcaagctgccgttccagcggctggtgcgcgagatcgcgcaggacttcaag 22079771

                                                                            
Query: 376      actgacttgaggttccagagcgccgccattggtgcgcttcaggaggctagtgaagcgtac 435
                || ||| || | ||||||||| | ||| |    ||||| ||||||||  | || || |||
Sbjct: 22079770 acggacctgcgcttccagagctcggccgtgatggcgctgcaggaggcgtgcgaggcctac 22079711

                                                                            
Query: 436      ctggtgggtttatttgaagataccaatctgtgtgccatccacgctaagagagtcaccatc 495
                ||||||||  | || || || ||||| ||||| ||||||||||| ||| | |||||||||
Sbjct: 22079710 ctggtggggctcttcgaggacaccaacctgtgcgccatccacgccaagcgcgtcaccatc 22079651

                                             
Query: 496      atgcccaaagacatccagttggctcgccg 524
                |||||||| ||||||||| ||||||||||
Sbjct: 22079650 atgcccaaggacatccagctggctcgccg 22079622



 Score =  168 bits (85), Expect = 4e-39
 Identities = 304/377 (80%)
 Strand = Plus / Minus

                                                                            
Query: 148      aagcagactgctcgtaagtccacgggtgggaaagcgccccgcaaacagctggccactaaa 207
                |||||||| ||||| |||||||| || || || ||||| ||||| ||||||||||| || 
Sbjct: 23187070 aagcagaccgctcgcaagtccaccggcggcaaggcgccgcgcaagcagctggccaccaag 23187011

                                                                            
Query: 208      gctgccaggaaaagcgctccctctaccggcggggtgaaaaaacctcatcgctacaggccc 267
                || ||| | || ||||| ||| | |||||||| ||||| || || || |||||| |||||
Sbjct: 23187010 gcggcccgcaagagcgcgcccgccaccggcggcgtgaagaagccgcaccgctaccggccc 23186951

                                                                            
Query: 268      gggaccgtcgcgcttcgagaaatccgtcgttaccaaaagtccacggagcttctgatccgg 327
                || || || || || || || ||||| || ||||| |||||||||||||| |||||||| 
Sbjct: 23186950 ggcacggtggccctgcgcgagatccggcgctaccagaagtccacggagctgctgatccgc 23186891

                                                                            
Query: 328      aagctgcccttccagaggttggtgagggagatcgcccaggatttcaaaactgacttgagg 387
                |||||||| |||||| || ||||| | |||||||| ||||| ||||| || ||| || | 
Sbjct: 23186890 aagctgccgttccagcggctggtgcgcgagatcgcgcaggacttcaagacggacctgcgc 23186831

                                                                            
Query: 388      ttccagagcgccgccattggtgcgcttcaggaggctagtgaagcgtacctggtgggttta 447
                ||||||||| | ||| |    ||||| ||||||||  | || || |||||||||||  | 
Sbjct: 23186830 ttccagagctcggccgtgatggcgctgcaggaggcgtgcgaggcctacctggtggggctc 23186771

                                                                            
Query: 448      tttgaagataccaatctgtgtgccatccacgctaagagagtcaccatcatgcccaaagac 507
                || || || ||||| ||||| ||||||||||| ||| | ||||||||||||||||| |||
Sbjct: 23186770 ttcgaggacaccaacctgtgcgccatccacgccaagcgcgtcaccatcatgcccaaggac 23186711

                                 
Query: 508      atccagttggctcgccg 524
                |||||| ||||||||||
Sbjct: 23186710 atccagctggctcgccg 23186694



 Score =  167 bits (84), Expect = 2e-38
 Identities = 331/412 (80%), Gaps = 1/412 (0%)
 Strand = Plus / Minus

                                                                            
Query: 136      atggcccgaaccaagcagactgctcgtaagtccacgggtgggaaag-cgccccgcaaaca 194
                ||||| || ||||||||||| ||||| |||||||| || || || | |||| ||||| ||
Sbjct: 23179687 atggctcgtaccaagcagaccgctcgcaagtccaccggcggcaagggcgccgcgcaagca 23179628

                                                                            
Query: 195      gctggccactaaagctgccaggaaaagcgctccctctaccggcggggtgaaaaaacctca 254
                ||||||||| || || ||| | || ||||| ||| | |||||||| ||||| || || ||
Sbjct: 23179627 gctggccaccaaggcggcccgcaagagcgcgcccgccaccggcggcgtgaagaagccgca 23179568

                                                                            
Query: 255      tcgctacaggcccgggaccgtcgcgcttcgagaaatccgtcgttaccaaaagtccacgga 314
                 |||||| ||||||| || || || || || || ||||| || ||||| |||||||||||
Sbjct: 23179567 ccgctaccggcccggcacggtggccctgcgcgagatccggcgctaccagaagtccacgga 23179508

                                                                            
Query: 315      gcttctgatccggaagctgcccttccagaggttggtgagggagatcgcccaggatttcaa 374
                ||| |||||||| |||||||| |||||| || ||||| | |||||||| ||||| |||||
Sbjct: 23179507 gctgctgatccgcaagctgccgttccagcggctggtgcgcgagatcgcgcaggacttcaa 23179448

                                                                            
Query: 375      aactgacttgaggttccagagcgccgccattggtgcgcttcaggaggctagtgaagcgta 434
                 || ||| || | ||||||||| | ||| |    ||||| ||||||||  | || || ||
Sbjct: 23179447 gacggacctgcgcttccagagctcggccgtgatggcgctgcaggaggcgtgcgaggccta 23179388

                                                                            
Query: 435      cctggtgggtttatttgaagataccaatctgtgtgccatccacgctaagagagtcaccat 494
                |||||||||  | || || || ||||| ||||| ||||||||||| ||| | ||||||||
Sbjct: 23179387 cctggtggggctcttcgaggacaccaacctgtgcgccatccacgccaagcgcgtcaccat 23179328

                                                                    
Query: 495      catgcccaaagacatccagttggctcgccggatacggggagagagagcttaa 546
                ||||||||| ||||||||| |||||||||| || || || || |||||||||
Sbjct: 23179327 catgcccaaggacatccagctggctcgccgcatccgcggggaaagagcttaa 23179276



 Score =  103 bits (52), Expect = 2e-19
 Identities = 229/288 (79%)
 Strand = Plus / Plus

                                                                           
Query: 226     ccctctaccggcggggtgaaaaaacctcatcgctacaggcccgggaccgtcgcgcttcga 285
               |||||||| || |||||||| ||||||||||| |||||||| || ||||| || || || 
Sbjct: 5756374 ccctctactggaggggtgaagaaacctcatcgttacaggcctggtaccgtggcactccgt 5756433

                                                                           
Query: 286     gaaatccgtcgttaccaaaagtccacggagcttctgatccggaagctgcccttccagagg 345
               |||||  | ||||| || |||||||| || |||||||| || ||||| ||||||||| | 
Sbjct: 5756434 gaaattagacgttatcagaagtccactgaacttctgattcgcaagcttcccttccagcgt 5756493

                                                                           
Query: 346     ttggtgagggagatcgcccaggatttcaaaactgacttgaggttccagagcgccgccatt 405
                ||||| |||| || || ||||| |||||||| ||  || | |||||||| || || |||
Sbjct: 5756494 ctggtgcgggaaattgctcaggacttcaaaacagatctgcgcttccagagtgcagctatt 5756553

                                                                           
Query: 406     ggtgcgcttcaggaggctagtgaagcgtacctggtgggtttatttgaagataccaatctg 465
               |||||  | |||||||| ||||| || || ||||| ||  | |||||||| ||||| |||
Sbjct: 5756554 ggtgctttgcaggaggcaagtgaggcctatctggttggcctttttgaagacaccaacctg 5756613

                                                               
Query: 466     tgtgccatccacgctaagagagtcaccatcatgcccaaagacatccag 513
               ||||| ||||| || ||  | || || || ||||| ||||||||||||
Sbjct: 5756614 tgtgctatccatgccaaacgtgtaacaattatgccaaaagacatccag 5756661


>Sscrofa_Chr09 
||          Length = 153670197

 Score =  149 bits (75), Expect = 4e-33
 Identities = 108/119 (90%)
 Strand = Plus / Minus

                                                                            
Query: 729      ctcaggagtgacaagttgctaatatgcagaagggatgggtgatatttcttgcttctcatg 788
                ||||||||||||| ||||||||||||||||||| ||| |||||||||||||||| |||||
Sbjct: 22972573 ctcaggagtgacacgttgctaatatgcagaaggaatgagtgatatttcttgcttatcatg 22972514

                                                                           
Query: 789      atgcatgtttctgtatgttaatgacttgttgggtagctattaaggtactagaattgata 847
                ||||||||||||||| | | || | ||||||||||| |||||||| |||||||||||||
Sbjct: 22972513 atgcatgtttctgtacggttataatttgttgggtagttattaaggcactagaattgata 22972455


>Sscrofa_Chr04 
||          Length = 143465943

 Score =  137 bits (69), Expect = 1e-29
 Identities = 237/293 (80%)
 Strand = Plus / Minus

                                                                             
Query: 232       accggcggggtgaaaaaacctcatcgctacaggcccgggaccgtcgcgcttcgagaaatc 291
                 |||||||| ||||| || || || |||||| |||| || ||||| || || || || |||
Sbjct: 108522382 accggcggcgtgaagaagccccaccgctaccggccgggcaccgtggccctgcgggagatc 108522323

                                                                             
Query: 292       cgtcgttaccaaaagtccacggagcttctgatccggaagctgcccttccagaggttggtg 351
                 || || ||||| ||||| || ||||| |||||||| ||||||||||||||| |  |||||
Sbjct: 108522322 cggcgctaccagaagtcgaccgagctgctgatccgcaagctgcccttccagcgcctggtg 108522263

                                                                             
Query: 352       agggagatcgcccaggatttcaaaactgacttgaggttccagagcgccgccattggtgcg 411
                  | |||||||| ||||| ||||| || ||| || | ||||||||| | ||| |    |||
Sbjct: 108522262 cgcgagatcgcgcaggacttcaagacggacctgcgcttccagagctcggccgtgatggcg 108522203

                                                                             
Query: 412       cttcaggaggctagtgaagcgtacctggtgggtttatttgaagataccaatctgtgtgcc 471
                 || |||||||| || || || |||||||||||  | |||||||| || || |||||||||
Sbjct: 108522202 ctgcaggaggcgagcgaggcctacctggtggggctgtttgaagacacgaacctgtgtgcc 108522143

                                                                      
Query: 472       atccacgctaagagagtcaccatcatgcccaaagacatccagttggctcgccg 524
                 |||||||| ||| | || |||||||||||||||||||||||| |||| |||||
Sbjct: 108522142 atccacgccaagcgcgtgaccatcatgcccaaagacatccagctggcccgccg 108522090



 Score =  137 bits (69), Expect = 1e-29
 Identities = 237/293 (80%)
 Strand = Plus / Minus

                                                                             
Query: 232       accggcggggtgaaaaaacctcatcgctacaggcccgggaccgtcgcgcttcgagaaatc 291
                 |||||||| ||||| || || || |||||| |||| || ||||| || || || || |||
Sbjct: 108799627 accggcggcgtgaagaagccccaccgctaccggccgggcaccgtggccctgcgggagatc 108799568

                                                                             
Query: 292       cgtcgttaccaaaagtccacggagcttctgatccggaagctgcccttccagaggttggtg 351
                 || || ||||| ||||| || ||||| |||||||| ||||||||||||||| |  |||||
Sbjct: 108799567 cggcgctaccagaagtcgaccgagctgctgatccgcaagctgcccttccagcgcctggtg 108799508

                                                                             
Query: 352       agggagatcgcccaggatttcaaaactgacttgaggttccagagcgccgccattggtgcg 411
                  | |||||||| ||||| ||||| || ||| || | ||||||||| | ||| |    |||
Sbjct: 108799507 cgcgagatcgcgcaggacttcaagacggacctgcgcttccagagctcggccgtgatggcg 108799448

                                                                             
Query: 412       cttcaggaggctagtgaagcgtacctggtgggtttatttgaagataccaatctgtgtgcc 471
                 || |||||||| || || || |||||||||||  | |||||||| || || |||||||||
Sbjct: 108799447 ctgcaggaggcgagcgaggcctacctggtggggctgtttgaagacacgaacctgtgtgcc 108799388

                                                                      
Query: 472       atccacgctaagagagtcaccatcatgcccaaagacatccagttggctcgccg 524
                 |||||||| ||| | || |||||||||||||||||||||||| |||| |||||
Sbjct: 108799387 atccacgccaagcgcgtgaccatcatgcccaaagacatccagctggcccgccg 108799335



 Score =  137 bits (69), Expect = 1e-29
 Identities = 237/293 (80%)
 Strand = Plus / Plus

                                                                             
Query: 232       accggcggggtgaaaaaacctcatcgctacaggcccgggaccgtcgcgcttcgagaaatc 291
                 |||||||| ||||| || || || |||||| |||| || ||||| || || || || |||
Sbjct: 108826607 accggcggcgtgaagaagccccaccgctaccggccgggcaccgtggccctgcgggagatc 108826666

                                                                             
Query: 292       cgtcgttaccaaaagtccacggagcttctgatccggaagctgcccttccagaggttggtg 351
                 || || ||||| ||||| || ||||| |||||||| ||||||||||||||| |  |||||
Sbjct: 108826667 cggcgctaccagaagtcgaccgagctgctgatccgcaagctgcccttccagcgcctggtg 108826726

                                                                             
Query: 352       agggagatcgcccaggatttcaaaactgacttgaggttccagagcgccgccattggtgcg 411
                  | |||||||| ||||| ||||| || ||| || | ||||||||| | ||| |    |||
Sbjct: 108826727 cgcgagatcgcgcaggacttcaagacggacctgcgcttccagagctcggccgtgatggcg 108826786

                                                                             
Query: 412       cttcaggaggctagtgaagcgtacctggtgggtttatttgaagataccaatctgtgtgcc 471
                 || |||||||| || || || |||||||||||  | |||||||| || || |||||||||
Sbjct: 108826787 ctgcaggaggcgagcgaggcctacctggtggggctgtttgaagacacgaacctgtgtgcc 108826846

                                                                      
Query: 472       atccacgctaagagagtcaccatcatgcccaaagacatccagttggctcgccg 524
                 |||||||| ||| | || |||||||||||||||||||||||| |||| |||||
Sbjct: 108826847 atccacgccaagcgcgtgaccatcatgcccaaagacatccagctggcccgccg 108826899


>Sscrofa_Chr01 
||          Length = 315321322

 Score =  113 bits (57), Expect = 2e-22
 Identities = 81/89 (91%)
 Strand = Plus / Minus

                                                                             
Query: 843       tgataaatgtgtacagggtccttttgcaataaaactggttatgacttgatccaagtgttt 902
                 |||||||||||||||||||||||||||||| || || ||||||||||||| ||| |||||
Sbjct: 199949814 tgataaatgtgtacagggtccttttgcaatgaagcttgttatgacttgatgcaattgttt 199949755

                                              
Query: 903       aacaattggggctgttaagtctgaccata 931
                 ||||||||||||| ||| |||| ||||||
Sbjct: 199949754 aacaattggggcttttacgtctcaccata 199949726


>Sscrofa_Chr03 
||          Length = 144787322

 Score = 95.6 bits (48), Expect = 5e-17
 Identities = 202/252 (80%), Gaps = 1/252 (0%)
 Strand = Plus / Plus

                                                                             
Query: 226       ccctctaccggcggggtgaaaaaacctcatcgctacaggcccgggaccgtcgcgcttcga 285
                 |||||||| || |||||||| ||||||||||| |||||||| || ||||| || || || 
Sbjct: 106880436 ccctctactggaggggtgaagaaacctcatcgttacaggcctggtaccgtggcactccgt 106880495

                                                                             
Query: 286       gaaatccgtcgttaccaaaagtccacggagcttctgatccggaagctgcccttccagag- 344
                 |||||  | ||||| || |||||||| || |||||||| || ||||| ||||||||| | 
Sbjct: 106880496 gaaattagacgttatcagaagtccactgaacttctgattcgcaagcttcccttccagcgt 106880555

                                                                             
Query: 345       gttggtgagggagatcgcccaggatttcaaaactgacttgaggttccagagcgccgccat 404
                  |||||| |||| || || ||||| |||||||| ||  || | |||||||| || || ||
Sbjct: 106880556 cttggtgcgggaaattgctcaggacttcaaaacagatatgcgcttccagagtgcagctat 106880615

                                                                             
Query: 405       tggtgcgcttcaggaggctagtgaagcgtacctggtgggtttatttgaagataccaatct 464
                 ||||||  | |||||||| ||||| || || ||||| ||  | |||||||| ||||| ||
Sbjct: 106880616 tggtgctttgcaggaggcaagtgaggcctatctggttggcctttttgaagacaccaacct 106880675

                             
Query: 465       gtgtgccatcca 476
                 |||||| |||||
Sbjct: 106880676 gtgtgctatcca 106880687


>Sscrofa_Chr15 
||          Length = 157681621

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                             
Query: 321       gatccggaagctgcccttccagaggttggtgagggagatcgcccaggatttcaaaactga 380
                 ||||| ||||| ||| ||||||||||||| ||||||| || ||||||  |||||||||||
Sbjct: 153929629 gatccagaagcggcctttccagaggttggggagggagttcacccagggcttcaaaactga 153929570

                   
Query: 381       ct 382
                 ||
Sbjct: 153929569 ct 153929568



 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                             
Query: 321       gatccggaagctgcccttccagaggttggtgagggagatcgcccaggatttcaaaactga 380
                 ||||| ||||| ||| ||||||||||||| ||||||| || ||||||  |||||||||||
Sbjct: 154371033 gatccagaagcggcctttccagaggttggggagggagttcacccagggcttcaaaactga 154371092

                   
Query: 381       ct 382
                 ||
Sbjct: 154371093 ct 154371094


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,939,765
Number of extensions: 176
Number of successful extensions: 176
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 24
Length of query: 1045
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1024
Effective length of database: 2,808,413,156
Effective search space: 2875815071744
Effective search space used: 2875815071744
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)