Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001801
(1166 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777085.1| ADP/ATP translocase 3 [Bos taurus]. 559 e-159
Alignment gi|NP_777084.1| ADP/ATP translocase 2 [Bos taurus]. 531 e-151
Alignment gi|NP_777083.1| ADP/ATP translocase 1 [Bos taurus]. 525 e-149
Alignment gi|NP_001039965.1| ADP/ATP translocase 4 [Bos taurus]. 425 e-119
Alignment gi|XP_002689470.1| PREDICTED: ADP/ATP translocase 1-like [Bos t... 422 e-118
Alignment gi|XP_001254615.1| PREDICTED: ADP/ATP translocase 1-like [Bos t... 422 e-118
Alignment gi|NP_001092536.1| calcium-binding mitochondrial carrier protei... 116 3e-26
Alignment gi|XP_001789552.1| PREDICTED: RIKEN cDNA 4930443G12-like isofor... 102 6e-22
Alignment gi|XP_872110.2| PREDICTED: RIKEN cDNA 4930443G12-like isoform 2... 102 6e-22
Alignment gi|NP_001178961.1| solute carrier family 25 member 42 [Bos taur... 100 2e-21
>ref|NP_777085.1| ADP/ATP translocase 3 [Bos taurus].
Length = 298
Score = 559 bits (1441), Expect = e-159
Identities = 278/298 (93%), Positives = 283/298 (94%)
Frame = +1
Query: 115 MTEQAISFAKDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVR 294
MTEQAISFAKDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVR
Sbjct: 1 MTEQAISFAKDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVR 60
Query: 295 IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFXXXXXXX 474
IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDK TQFWRYF
Sbjct: 61 IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKRTQFWRYFAGNLASG 120
Query: 475 XXXXXTSLCFVYPLDFARTRLAADVGKSATEREFKGLGDCLVKITKSDGIRGLYQGFNVS 654
TSLCFVYPLDFARTRLAADVGKS +EREF+GLGDCLVKITKSDGIRGLYQGFNVS
Sbjct: 121 GAAGATSLCFVYPLDFARTRLAADVGKSGSEREFRGLGDCLVKITKSDGIRGLYQGFNVS 180
Query: 655 VQGIIIYRAAYFGVYDTAKGMLPDPRNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMM 834
VQGIIIYRAAYFG+YDTAKGMLPDP+NTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMM
Sbjct: 181 VQGIIIYRAAYFGIYDTAKGMLPDPKNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMM 240
Query: 835 QSGRKGADIMYKGTLDCWRKIFKDEGGKAFFKGAWSNVLRGMGGAFVLVLYDELKKVI 1008
QSGRKGADIMYKGT+DCWRKI KDEGGKAFFKGAWSNVLRGMGGAFVLVLYDELKKVI
Sbjct: 241 QSGRKGADIMYKGTVDCWRKILKDEGGKAFFKGAWSNVLRGMGGAFVLVLYDELKKVI 298
>ref|NP_777084.1| ADP/ATP translocase 2 [Bos taurus].
Length = 298
Score = 531 bits (1368), Expect = e-151
Identities = 258/296 (87%), Positives = 272/296 (91%)
Frame = +1
Query: 115 MTEQAISFAKDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVR 294
MT+ A+SFAKDFLAGG+AAAISKTAVAPIERVKLLLQVQHASKQI ADKQYKGI+DC+VR
Sbjct: 1 MTDAAVSFAKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQITADKQYKGIIDCVVR 60
Query: 295 IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFXXXXXXX 474
IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDK TQFWRYF
Sbjct: 61 IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKRTQFWRYFAGNLASG 120
Query: 475 XXXXXTSLCFVYPLDFARTRLAADVGKSATEREFKGLGDCLVKITKSDGIRGLYQGFNVS 654
TSLCFVYPLDFARTRLAADVGK+ EREF+GLGDCLVKI KSDGIRGLYQGFNVS
Sbjct: 121 GAAGATSLCFVYPLDFARTRLAADVGKAGAEREFRGLGDCLVKIYKSDGIRGLYQGFNVS 180
Query: 655 VQGIIIYRAAYFGVYDTAKGMLPDPRNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMM 834
VQGIIIYRAAYFG+YDTAKGMLPDP+NTHI +SWMIAQ+VTAVAG+ SYPFDTVRRRMMM
Sbjct: 181 VQGIIIYRAAYFGIYDTAKGMLPDPKNTHIFISWMIAQSVTAVAGLTSYPFDTVRRRMMM 240
Query: 835 QSGRKGADIMYKGTLDCWRKIFKDEGGKAFFKGAWSNVLRGMGGAFVLVLYDELKK 1002
QSGRKG DIMY GTLDCWRKI +DEG KAFFKGAWSNVLRGMGGAFVLVLYDE+KK
Sbjct: 241 QSGRKGTDIMYTGTLDCWRKIARDEGAKAFFKGAWSNVLRGMGGAFVLVLYDEIKK 296
>ref|NP_777083.1| ADP/ATP translocase 1 [Bos taurus].
Length = 298
Score = 525 bits (1352), Expect = e-149
Identities = 254/298 (85%), Positives = 273/298 (91%)
Frame = +1
Query: 115 MTEQAISFAKDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVR 294
M++QA+SF KDFLAGG+AAAISKTAVAPIERVKLLLQVQHASKQI+A+KQYKGI+DC+VR
Sbjct: 1 MSDQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVR 60
Query: 295 IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFXXXXXXX 474
IPKEQG LSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVD+H QFWRYF
Sbjct: 61 IPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASG 120
Query: 475 XXXXXTSLCFVYPLDFARTRLAADVGKSATEREFKGLGDCLVKITKSDGIRGLYQGFNVS 654
TSLCFVYPLDFARTRLAADVGK A +REF GLG+C+ KI KSDG+RGLYQGFNVS
Sbjct: 121 GAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVS 180
Query: 655 VQGIIIYRAAYFGVYDTAKGMLPDPRNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMM 834
VQGIIIYRAAYFGVYDTAKGMLPDP+N HI+VSWMIAQTVTAVAG+VSYPFDTVRRRMMM
Sbjct: 181 VQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMM 240
Query: 835 QSGRKGADIMYKGTLDCWRKIFKDEGGKAFFKGAWSNVLRGMGGAFVLVLYDELKKVI 1008
QSGRKGADIMY GT+DCWRKI KDEG KAFFKGAWSNVLRGMGGAFVLVLYDE+KK +
Sbjct: 241 QSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLVLYDEIKKFV 298
>ref|NP_001039965.1| ADP/ATP translocase 4 [Bos taurus].
Length = 323
Score = 425 bits (1092), Expect = e-119
Identities = 206/294 (70%), Positives = 242/294 (82%)
Frame = +1
Query: 127 AISFAKDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVRIPKE 306
A SF KD LAGG+AAA+SKT VAPIERVKLLLQVQ +SKQI+ + QYKGIVDC+VRIP+E
Sbjct: 21 ATSFGKDLLAGGVAAAVSKTTVAPIERVKLLLQVQASSKQISPEAQYKGIVDCLVRIPRE 80
Query: 307 QGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFXXXXXXXXXXX 486
QG LS+WRGNLANVIRYFPTQALNFAFKDKYKQ+F+ GV+K QFWR+F
Sbjct: 81 QGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQLFMSGVNKEKQFWRWFLANLASGGAAG 140
Query: 487 XTSLCFVYPLDFARTRLAADVGKSATEREFKGLGDCLVKITKSDGIRGLYQGFNVSVQGI 666
TSLC VYPLDFARTRL AD+GK ER+FKGLGDC++KI KSDGI GLYQGF VSVQGI
Sbjct: 141 ATSLCVVYPLDFARTRLGADIGKGPEERQFKGLGDCIMKIAKSDGIVGLYQGFGVSVQGI 200
Query: 667 IIYRAAYFGVYDTAKGMLPDPRNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMMQSGR 846
I+YRA+YFG YDT KG+LP P+ TH +VS+ IAQ VT +G++SYPFDTVRRRMMMQSG
Sbjct: 201 IVYRASYFGAYDTVKGLLPKPKETHFLVSFFIAQVVTTCSGILSYPFDTVRRRMMMQSGE 260
Query: 847 KGADIMYKGTLDCWRKIFKDEGGKAFFKGAWSNVLRGMGGAFVLVLYDELKKVI 1008
A+ YKGTLDC+ KI++ EG AFF+GA+SN+LRG GGA VLVLYD++K ++
Sbjct: 261 --AERQYKGTLDCFMKIYQQEGIGAFFRGAFSNILRGTGGALVLVLYDKIKDLL 312
>ref|XP_002689470.1| PREDICTED: ADP/ATP translocase 1-like [Bos taurus].
Length = 401
Score = 422 bits (1086), Expect = e-118
Identities = 205/250 (82%), Positives = 221/250 (88%), Gaps = 2/250 (0%)
Frame = +1
Query: 190 VAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVRIPKEQGVLSFWRGNLANVIRYFPTQ 369
V PIERVKLLLQVQHASKQI+A+KQYKGI+DC+VRIPKEQG LSFWRGNLANVIRYFPTQ
Sbjct: 104 VTPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 163
Query: 370 ALNFAFKDKYKQIFLGGVDKHTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFARTRLAADV 549
ALNFAFKDKYKQIFLGGVD+H QFWRYF TSLCFVYPLDFARTRLAADV
Sbjct: 164 ALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADV 223
Query: 550 GKSATEREFKGLGDCLVKITKSDGIRGLYQGFNVS--VQGIIIYRAAYFGVYDTAKGMLP 723
GK A +REF GLG+C+ KI KSDG+RGLYQGFNVS VQGIIIYRAAYFGVYDTAKGMLP
Sbjct: 224 GKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQVQGIIIYRAAYFGVYDTAKGMLP 283
Query: 724 DPRNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMMQSGRKGADIMYKGTLDCWRKIFK 903
DP+N HI+VSWMIAQTVTAVAG+VSYPFDT RRRMMMQSG+KGADIMY GT+DCWRKI K
Sbjct: 284 DPKNVHIIVSWMIAQTVTAVAGLVSYPFDTARRRMMMQSGQKGADIMYTGTVDCWRKIAK 343
Query: 904 DEGGKAFFKG 933
DEG + +F G
Sbjct: 344 DEGVRLYFFG 353
>ref|XP_001254615.1| PREDICTED: ADP/ATP translocase 1-like [Bos taurus].
Length = 401
Score = 422 bits (1086), Expect = e-118
Identities = 205/250 (82%), Positives = 221/250 (88%), Gaps = 2/250 (0%)
Frame = +1
Query: 190 VAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVRIPKEQGVLSFWRGNLANVIRYFPTQ 369
V PIERVKLLLQVQHASKQI+A+KQYKGI+DC+VRIPKEQG LSFWRGNLANVIRYFPTQ
Sbjct: 104 VTPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 163
Query: 370 ALNFAFKDKYKQIFLGGVDKHTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFARTRLAADV 549
ALNFAFKDKYKQIFLGGVD+H QFWRYF TSLCFVYPLDFARTRLAADV
Sbjct: 164 ALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADV 223
Query: 550 GKSATEREFKGLGDCLVKITKSDGIRGLYQGFNVS--VQGIIIYRAAYFGVYDTAKGMLP 723
GK A +REF GLG+C+ KI KSDG+RGLYQGFNVS VQGIIIYRAAYFGVYDTAKGMLP
Sbjct: 224 GKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQVQGIIIYRAAYFGVYDTAKGMLP 283
Query: 724 DPRNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMMQSGRKGADIMYKGTLDCWRKIFK 903
DP+N HI+VSWMIAQTVTAVAG+VSYPFDT RRRMMMQSG+KGADIMY GT+DCWRKI K
Sbjct: 284 DPKNVHIIVSWMIAQTVTAVAGLVSYPFDTARRRMMMQSGQKGADIMYTGTVDCWRKIAK 343
Query: 904 DEGGKAFFKG 933
DEG + +F G
Sbjct: 344 DEGVRLYFFG 353
>ref|NP_001092536.1| calcium-binding mitochondrial carrier protein SCaMC-1 [Bos taurus].
Length = 477
Score = 116 bits (291), Expect = 3e-26
Identities = 86/295 (29%), Positives = 144/295 (48%), Gaps = 6/295 (2%)
Frame = +1
Query: 142 KDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVRIPKEQGVLS 321
+ LAGG+A A+S+T+ AP++R+K+++QV H SK A Y G + KE G+ S
Sbjct: 196 RQLLAGGVAGAVSRTSTAPLDRLKVMMQV-HGSKS-AKMNIYGGFQQMV----KEGGIRS 249
Query: 322 FWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFXXXXXXXXXXXXTSLC 501
WRGN NVI+ P A+ F ++YK++ K F R+ T+
Sbjct: 250 LWRGNGTNVIKIAPETAVKFWAYEQYKKLLTEEGQKIGTFERF-----VSGSMAGATAQT 304
Query: 502 FVYPLDFARTRLAADVGKSATEREFKGLGDCLVKITKSDGIRGLYQGFNVSVQGIIIYRA 681
F+YP++ +TRLA VGK+ ++ G+ DC KI K +G+ Y+G+ ++ GII Y
Sbjct: 305 FIYPMEVLKTRLA--VGKTG---QYSGMFDCAKKILKYEGMGAFYKGYVPNLLGIIPYAG 359
Query: 682 AYFGVYDTAK-----GMLPDPRNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMMQSGR 846
VY+ K D N ++V + + SYP VR RM Q+
Sbjct: 360 IDLAVYELLKSHWLDNFAKDSVNPGVMVLLGCGALSSTCGQLASYPLALVRTRMQAQAMI 419
Query: 847 KGADIMYKGTLDCWRKIFKDEGGKAFFKGAWSNVLRGMGGAFV-LVLYDELKKVI 1008
+ + + + +R+I EG ++G N ++ + + V+Y+ +K+ +
Sbjct: 420 EKSPQL--NMVGLFRRILSKEGLPGLYRGITPNFMKVLPAVGISYVVYENMKQTL 472
>ref|XP_001789552.1| PREDICTED: RIKEN cDNA 4930443G12-like isoform 1 [Bos taurus].
Length = 475
Score = 102 bits (254), Expect = 6e-22
Identities = 84/302 (27%), Positives = 143/302 (47%), Gaps = 13/302 (4%)
Frame = +1
Query: 88 GRCAARPATMTEQ---AISFAKDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAAD 258
G A P +TEQ + ++ K +AGGIA +++T AP +R+K+++Q+ +
Sbjct: 174 GESIAIPDDITEQEKRSGNWWKRLVAGGIAGGVARTCTAPFDRLKVMMQIH------SLQ 227
Query: 259 KQYKGIVDCIVRIPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQ 438
++D ++ KE G+LS WRGN NV++ P AL ++YK+ K
Sbjct: 228 SGKMRLLDGFKQMVKEGGILSLWRGNGVNVLKIAPETALKVGTYEQYKKWLSSDGAKIGI 287
Query: 439 FWRYFXXXXXXXXXXXXTSLCFVYPLDFARTRLAADVGKSATEREFKGLGDCLVKITKSD 618
R+ T+ +YP++ +TRLA VGK+ ++ G+ DC ++ K +
Sbjct: 288 IERFI-----SGSLAGATAQTCIYPMEVIKTRLA--VGKTG---QYSGIIDCGKQLLKQE 337
Query: 619 GIRGLYQGFNVSVQGIIIYRAAYFGVYD---------TAKGMLPDPRNTHIVVSWMIAQT 771
G R ++G+ ++ GII Y VY+ A+G L DP I + +
Sbjct: 338 GARAFFKGYIPNLLGIIPYAGIDLCVYEHLKNHWLEHHARGSL-DP---GIAILLGCSTL 393
Query: 772 VTAVAGVVSYPFDTVRRRMMMQS-GRKGADIMYKGTLDCWRKIFKDEGGKAFFKGAWSNV 948
A + S+P + +R RM Q+ KG M + D I+ EG + FF+G N+
Sbjct: 394 SNACGQMASFPLNLIRTRMQAQALEEKGTTSMIQLIQD----IYNKEGKRGFFRGVTPNI 449
Query: 949 LR 954
++
Sbjct: 450 IK 451
>ref|XP_872110.2| PREDICTED: RIKEN cDNA 4930443G12-like isoform 2 [Bos taurus].
Length = 474
Score = 102 bits (254), Expect = 6e-22
Identities = 84/302 (27%), Positives = 143/302 (47%), Gaps = 13/302 (4%)
Frame = +1
Query: 88 GRCAARPATMTEQ---AISFAKDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAAD 258
G A P +TEQ + ++ K +AGGIA +++T AP +R+K+++Q+ +
Sbjct: 173 GESIAIPDDITEQEKRSGNWWKRLVAGGIAGGVARTCTAPFDRLKVMMQIH------SLQ 226
Query: 259 KQYKGIVDCIVRIPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQ 438
++D ++ KE G+LS WRGN NV++ P AL ++YK+ K
Sbjct: 227 SGKMRLLDGFKQMVKEGGILSLWRGNGVNVLKIAPETALKVGTYEQYKKWLSSDGAKIGI 286
Query: 439 FWRYFXXXXXXXXXXXXTSLCFVYPLDFARTRLAADVGKSATEREFKGLGDCLVKITKSD 618
R+ T+ +YP++ +TRLA VGK+ ++ G+ DC ++ K +
Sbjct: 287 IERFI-----SGSLAGATAQTCIYPMEVIKTRLA--VGKTG---QYSGIIDCGKQLLKQE 336
Query: 619 GIRGLYQGFNVSVQGIIIYRAAYFGVYD---------TAKGMLPDPRNTHIVVSWMIAQT 771
G R ++G+ ++ GII Y VY+ A+G L DP I + +
Sbjct: 337 GARAFFKGYIPNLLGIIPYAGIDLCVYEHLKNHWLEHHARGSL-DP---GIAILLGCSTL 392
Query: 772 VTAVAGVVSYPFDTVRRRMMMQS-GRKGADIMYKGTLDCWRKIFKDEGGKAFFKGAWSNV 948
A + S+P + +R RM Q+ KG M + D I+ EG + FF+G N+
Sbjct: 393 SNACGQMASFPLNLIRTRMQAQALEEKGTTSMIQLIQD----IYNKEGKRGFFRGVTPNI 448
Query: 949 LR 954
++
Sbjct: 449 IK 450
>ref|NP_001178961.1| solute carrier family 25 member 42 [Bos taurus].
Length = 318
Score = 100 bits (249), Expect = 2e-21
Identities = 79/281 (28%), Positives = 133/281 (47%), Gaps = 12/281 (4%)
Frame = +1
Query: 151 LAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVRIPKEQGVLSFWR 330
L+G +A A++KTAVAP++R K++ QV +SK+ +A + ++ + + +G LS WR
Sbjct: 38 LSGALAGALAKTAVAPLDRTKIIFQV--SSKRFSAKEAFRLLYFTYLH----EGFLSLWR 91
Query: 331 GNLANVIRYFPTQALNFAFKDKYKQI---FLGGVDKHTQFWRYFXXXXXXXXXXXXTSLC 501
GN A ++R P A+ F+ ++YK++ + G + W T+
Sbjct: 92 GNSATMVRVVPYAAIQFSAHEEYKRLLGSYYGFRGEALPPW----PRLLAGALAGTTAAS 147
Query: 502 FVYPLDFARTRLAADVGKSATEREFKGLGDCLVKITKSDGIRGLYQGFNVSVQGIIIYRA 681
YPLD R R+A + + + ++I++ +G++ LY GF +V G+I Y
Sbjct: 148 LTYPLDLVRARMAV-----TPKEMYSNIFHVFIRISREEGLKTLYHGFVPTVLGVIPYAG 202
Query: 682 AYFGVYDTAKGM------LPDPRNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMMQ-- 837
F Y+T K + P P ++ A + A SYP D VRRRM
Sbjct: 203 LSFFTYETLKSLHREYSGRPQPYPFERMIFGACAGLIGQSA---SYPLDVVRRRMQTAGV 259
Query: 838 SGRKGADIMYKGTLDCWRKIFKDEG-GKAFFKGAWSNVLRG 957
+G + I + R I ++EG + +KG N L+G
Sbjct: 260 TGHQRTSI-----VRTMRTIVREEGVVRGLYKGLSMNWLKG 295
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,224,627
Number of extensions: 944174
Number of successful extensions: 4726
Number of sequences better than 1.0e-05: 52
Number of HSP's gapped: 4502
Number of HSP's successfully gapped: 68
Length of query: 388
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 284
Effective length of database: 14,240,222
Effective search space: 4044223048
Effective search space used: 4044223048
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001801
(1166 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537947.2| PREDICTED: similar to ADP/ATP translocase 3 (Ad... 574 e-164
Alignment gi|XP_549215.2| PREDICTED: similar to solute carrier family 25,... 529 e-150
Alignment gi|XP_851701.1| PREDICTED: similar to solute carrier family 25,... 529 e-150
Alignment gi|XP_864148.1| PREDICTED: similar to solute carrier family 25,... 517 e-147
Alignment gi|XP_864192.1| PREDICTED: similar to solute carrier family 25,... 511 e-145
Alignment gi|XP_532844.2| PREDICTED: similar to solute carrier family 25,... 502 e-142
Alignment gi|XP_864170.1| PREDICTED: similar to solute carrier family 25,... 498 e-141
Alignment gi|XP_864217.1| PREDICTED: similar to solute carrier family 25,... 451 e-127
Alignment gi|XP_864129.1| PREDICTED: similar to ADP/ATP translocase 2 (Ad... 422 e-118
Alignment gi|XP_540952.2| PREDICTED: similar to solute carrier family 25 ... 417 e-116
>ref|XP_537947.2| PREDICTED: similar to ADP/ATP translocase 3 (Adenine nucleotide
translocator 2) (ANT 3) (ADP,ATP carrier protein 3)
(Solute carrier family 25, member 6) (ADP,ATP carrier
protein, isoform T2) [Canis familiaris].
Length = 470
Score = 574 bits (1480), Expect = e-164
Identities = 295/340 (86%), Positives = 299/340 (87%), Gaps = 11/340 (3%)
Frame = +1
Query: 22 PGGGSADQRRLPC-----------DLRASAPLSGRCAARPATMTEQAISFAKDFLAGGIA 168
P + QRR P +RA P S A PA MTEQAISFAKDFLAGGIA
Sbjct: 133 PAAAARSQRRPPSLPPSLGSPVRPAVRARTPPSA--ARPPAAMTEQAISFAKDFLAGGIA 190
Query: 169 AAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVRIPKEQGVLSFWRGNLANV 348
AAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVRIPKEQGVLSFWRGNLANV
Sbjct: 191 AAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVRIPKEQGVLSFWRGNLANV 250
Query: 349 IRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFAR 528
IRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYF TSLCFVYPLDFAR
Sbjct: 251 IRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFAGNLASGGAAGATSLCFVYPLDFAR 310
Query: 529 TRLAADVGKSATEREFKGLGDCLVKITKSDGIRGLYQGFNVSVQGIIIYRAAYFGVYDTA 708
TRLAADVGKS TEREFKGLGDCLVKITKSDGIRGLYQGFNVSVQGIIIYRAAYFGVYDTA
Sbjct: 311 TRLAADVGKSGTEREFKGLGDCLVKITKSDGIRGLYQGFNVSVQGIIIYRAAYFGVYDTA 370
Query: 709 KGMLPDPRNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMMQSGRKGADIMYKGTLDCW 888
KGMLPDP+NTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMMQSGRKGADIMYKGT+DCW
Sbjct: 371 KGMLPDPKNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMMQSGRKGADIMYKGTVDCW 430
Query: 889 RKIFKDEGGKAFFKGAWSNVLRGMGGAFVLVLYDELKKVI 1008
RKIFKDEGGKAFFKGAWSNVLRGMGGAFVLVLYDELKKVI
Sbjct: 431 RKIFKDEGGKAFFKGAWSNVLRGMGGAFVLVLYDELKKVI 470
>ref|XP_549215.2| PREDICTED: similar to solute carrier family 25, member 5 isoform 1
[Canis familiaris].
Length = 298
Score = 529 bits (1363), Expect = e-150
Identities = 256/296 (86%), Positives = 271/296 (91%)
Frame = +1
Query: 115 MTEQAISFAKDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVR 294
MT+ +SF KDFLAGG++AAISKTAVAPIERVKLLLQVQHASKQI ADKQYKGI+DC+VR
Sbjct: 1 MTDATVSFTKDFLAGGVSAAISKTAVAPIERVKLLLQVQHASKQITADKQYKGIIDCVVR 60
Query: 295 IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFXXXXXXX 474
IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDK TQFWRYF
Sbjct: 61 IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKRTQFWRYFAGNLASG 120
Query: 475 XXXXXTSLCFVYPLDFARTRLAADVGKSATEREFKGLGDCLVKITKSDGIRGLYQGFNVS 654
TSLCFVYPLDFARTRLAADVGK+ EREF+GLGDCLVKI KSDGIRGLYQGFNVS
Sbjct: 121 GAAGATSLCFVYPLDFARTRLAADVGKAGAEREFRGLGDCLVKIYKSDGIRGLYQGFNVS 180
Query: 655 VQGIIIYRAAYFGVYDTAKGMLPDPRNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMM 834
VQGIIIYRAAYFG+YDTAKGMLPDP+NTHI +SWMIAQ+VTAVAG+ SYPFDTVRRRMMM
Sbjct: 181 VQGIIIYRAAYFGIYDTAKGMLPDPKNTHIFISWMIAQSVTAVAGLTSYPFDTVRRRMMM 240
Query: 835 QSGRKGADIMYKGTLDCWRKIFKDEGGKAFFKGAWSNVLRGMGGAFVLVLYDELKK 1002
QSGRKG DIMY GTLDCWRKI +DEGGKAFFKGAWSNVLRGMGGAFVLVLYDE+KK
Sbjct: 241 QSGRKGTDIMYTGTLDCWRKIARDEGGKAFFKGAWSNVLRGMGGAFVLVLYDEIKK 296
>ref|XP_851701.1| PREDICTED: similar to solute carrier family 25, member 5 isoform 2
[Canis familiaris].
Length = 298
Score = 529 bits (1363), Expect = e-150
Identities = 256/296 (86%), Positives = 271/296 (91%)
Frame = +1
Query: 115 MTEQAISFAKDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVR 294
MT+ +SF KDFLAGG++AAISKTAVAPIERVKLLLQVQHASKQI ADKQYKGI+DC+VR
Sbjct: 1 MTDATVSFTKDFLAGGVSAAISKTAVAPIERVKLLLQVQHASKQITADKQYKGIIDCVVR 60
Query: 295 IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFXXXXXXX 474
IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDK TQFWRYF
Sbjct: 61 IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKRTQFWRYFAGNLASG 120
Query: 475 XXXXXTSLCFVYPLDFARTRLAADVGKSATEREFKGLGDCLVKITKSDGIRGLYQGFNVS 654
TSLCFVYPLDFARTRLAADVGK+ EREF+GLGDCLVKI KSDGIRGLYQGFNVS
Sbjct: 121 GAAGATSLCFVYPLDFARTRLAADVGKAGAEREFRGLGDCLVKIYKSDGIRGLYQGFNVS 180
Query: 655 VQGIIIYRAAYFGVYDTAKGMLPDPRNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMM 834
VQGIIIYRAAYFG+YDTAKGMLPDP+NTHI +SWMIAQ+VTAVAG+ SYPFDTVRRRMMM
Sbjct: 181 VQGIIIYRAAYFGIYDTAKGMLPDPKNTHIFISWMIAQSVTAVAGLTSYPFDTVRRRMMM 240
Query: 835 QSGRKGADIMYKGTLDCWRKIFKDEGGKAFFKGAWSNVLRGMGGAFVLVLYDELKK 1002
QSGRKG DIMY GTLDCWRKI +DEGGKAFFKGAWSNVLRGMGGAFVLVLYDE+KK
Sbjct: 241 QSGRKGTDIMYTGTLDCWRKIARDEGGKAFFKGAWSNVLRGMGGAFVLVLYDEIKK 296
>ref|XP_864148.1| PREDICTED: similar to solute carrier family 25, member 5 isoform 4
[Canis familiaris].
Length = 298
Score = 517 bits (1332), Expect = e-147
Identities = 251/296 (84%), Positives = 267/296 (90%)
Frame = +1
Query: 115 MTEQAISFAKDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVR 294
MT+ +SF KDFLAGG++AAISKTAVAPIERVKLLLQVQHASKQI ADKQYKGI+DC+VR
Sbjct: 1 MTDATVSFTKDFLAGGVSAAISKTAVAPIERVKLLLQVQHASKQITADKQYKGIIDCVVR 60
Query: 295 IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFXXXXXXX 474
IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDK TQFWRYF
Sbjct: 61 IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKRTQFWRYFAGNLASG 120
Query: 475 XXXXXTSLCFVYPLDFARTRLAADVGKSATEREFKGLGDCLVKITKSDGIRGLYQGFNVS 654
TSLCFVYPLDFARTRLAADVGK+ EREF+GLGDCLVKI KSDGIRGLYQGFNVS
Sbjct: 121 GAAGATSLCFVYPLDFARTRLAADVGKAGAEREFRGLGDCLVKIYKSDGIRGLYQGFNVS 180
Query: 655 VQGIIIYRAAYFGVYDTAKGMLPDPRNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMM 834
VQGIIIYRAAYFG+YDTAKGMLPDP+NTHI +SWMIAQ+VTAVAG+ SYPFDTVRRRMMM
Sbjct: 181 VQGIIIYRAAYFGIYDTAKGMLPDPKNTHIFISWMIAQSVTAVAGLTSYPFDTVRRRMMM 240
Query: 835 QSGRKGADIMYKGTLDCWRKIFKDEGGKAFFKGAWSNVLRGMGGAFVLVLYDELKK 1002
Q + DIMY GTLDCWRKI +DEGGKAFFKGAWSNVLRGMGGAFVLVLYDE+KK
Sbjct: 241 QLWPQATDIMYTGTLDCWRKIARDEGGKAFFKGAWSNVLRGMGGAFVLVLYDEIKK 296
>ref|XP_864192.1| PREDICTED: similar to solute carrier family 25, member 5 isoform 6
[Canis familiaris].
Length = 299
Score = 511 bits (1316), Expect = e-145
Identities = 252/297 (84%), Positives = 266/297 (89%), Gaps = 1/297 (0%)
Frame = +1
Query: 115 MTEQAISFAKDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVR 294
MT+ +SF KDFLAGG++AAISKTAVAPIERVKLLLQVQHASKQI ADKQYKGI+DC+VR
Sbjct: 1 MTDATVSFTKDFLAGGVSAAISKTAVAPIERVKLLLQVQHASKQITADKQYKGIIDCVVR 60
Query: 295 IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFXXXXXXX 474
IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDK TQFWRYF
Sbjct: 61 IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKRTQFWRYFAGNLASG 120
Query: 475 XXXXXTSLCFVYPLDFARTRLAADVGKSATEREFKGLGDCLVKITKSDGIRGLYQGFNVS 654
TSLCFVYPLDFARTRLAADVGK+ EREF+GLGDCLVKI KSDGIRGLYQGFNVS
Sbjct: 121 GAAGATSLCFVYPLDFARTRLAADVGKAGAEREFRGLGDCLVKIYKSDGIRGLYQGFNVS 180
Query: 655 VQGIIIYRAAYFGVYDTAKGMLPDP-RNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMM 831
VQGIIIYRAAYFG+YDTAKG L NTHI +SWMIAQ+VTAVAG+ SYPFDTVRRRMM
Sbjct: 181 VQGIIIYRAAYFGIYDTAKGKLAMCFENTHIFISWMIAQSVTAVAGLTSYPFDTVRRRMM 240
Query: 832 MQSGRKGADIMYKGTLDCWRKIFKDEGGKAFFKGAWSNVLRGMGGAFVLVLYDELKK 1002
MQSGRKG DIMY GTLDCWRKI +DEGGKAFFKGAWSNVLRGMGGAFVLVLYDE+KK
Sbjct: 241 MQSGRKGTDIMYTGTLDCWRKIARDEGGKAFFKGAWSNVLRGMGGAFVLVLYDEIKK 297
>ref|XP_532844.2| PREDICTED: similar to solute carrier family 25, member 4 [Canis
familiaris].
Length = 298
Score = 502 bits (1293), Expect = e-142
Identities = 244/298 (81%), Positives = 264/298 (88%)
Frame = +1
Query: 115 MTEQAISFAKDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVR 294
M++ A+SF KDFLAGG+AAA+SKTAVA I QVQHASKQI+A+KQYKGI+DC+VR
Sbjct: 1 MSDHALSFLKDFLAGGVAAAVSKTAVATIPPPLQPPQVQHASKQISAEKQYKGIIDCVVR 60
Query: 295 IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFXXXXXXX 474
IPKEQG LSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVD+H QFWRYF
Sbjct: 61 IPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASG 120
Query: 475 XXXXXTSLCFVYPLDFARTRLAADVGKSATEREFKGLGDCLVKITKSDGIRGLYQGFNVS 654
TSLCFVYPLDFARTRLAADVGK A +REF GLGDCL KI KSDG+RGLYQGF+VS
Sbjct: 121 GAAGATSLCFVYPLDFARTRLAADVGKGAAQREFSGLGDCLTKIFKSDGLRGLYQGFSVS 180
Query: 655 VQGIIIYRAAYFGVYDTAKGMLPDPRNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMM 834
VQGIIIYRAAYFGVYDTAKGMLPDP+N HI+VSWMIAQ+VTAVAG+VSYPFDTVRRRMMM
Sbjct: 181 VQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQSVTAVAGLVSYPFDTVRRRMMM 240
Query: 835 QSGRKGADIMYKGTLDCWRKIFKDEGGKAFFKGAWSNVLRGMGGAFVLVLYDELKKVI 1008
QSGRKGADIMY GT+DCWRKI KDEG KAFFKGAWSNVLRGMGGAFVLVLYDE+KK +
Sbjct: 241 QSGRKGADIMYTGTVDCWRKIAKDEGAKAFFKGAWSNVLRGMGGAFVLVLYDEIKKFV 298
>ref|XP_864170.1| PREDICTED: similar to solute carrier family 25, member 5 isoform 5
[Canis familiaris].
Length = 294
Score = 498 bits (1282), Expect = e-141
Identities = 247/296 (83%), Positives = 260/296 (87%)
Frame = +1
Query: 115 MTEQAISFAKDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVR 294
MT+ +SF KDFLAGG++AAISKTAVAPIERVKLLLQVQHASKQI ADKQYKGI+DC+VR
Sbjct: 1 MTDATVSFTKDFLAGGVSAAISKTAVAPIERVKLLLQVQHASKQITADKQYKGIIDCVVR 60
Query: 295 IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFXXXXXXX 474
IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDK TQFWRYF
Sbjct: 61 IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKRTQFWRYFAGNLASG 120
Query: 475 XXXXXTSLCFVYPLDFARTRLAADVGKSATEREFKGLGDCLVKITKSDGIRGLYQGFNVS 654
TSLCFVYPLDFARTRLAADVGK+ EREF+GLGDCLVKI KSDGIRGLYQGFNVS
Sbjct: 121 GAAGATSLCFVYPLDFARTRLAADVGKAGAEREFRGLGDCLVKIYKSDGIRGLYQGFNVS 180
Query: 655 VQGIIIYRAAYFGVYDTAKGMLPDPRNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMM 834
VQGIIIYRAAYFG+YDTAKG L WMIAQ+VTAVAG+ SYPFDTVRRRMMM
Sbjct: 181 VQGIIIYRAAYFGIYDTAKGKLA----MCFEAVWMIAQSVTAVAGLTSYPFDTVRRRMMM 236
Query: 835 QSGRKGADIMYKGTLDCWRKIFKDEGGKAFFKGAWSNVLRGMGGAFVLVLYDELKK 1002
QSGRKG DIMY GTLDCWRKI +DEGGKAFFKGAWSNVLRGMGGAFVLVLYDE+KK
Sbjct: 237 QSGRKGTDIMYTGTLDCWRKIARDEGGKAFFKGAWSNVLRGMGGAFVLVLYDEIKK 292
>ref|XP_864217.1| PREDICTED: similar to solute carrier family 25, member 5 isoform 7
[Canis familiaris].
Length = 256
Score = 451 bits (1161), Expect = e-127
Identities = 227/296 (76%), Positives = 242/296 (81%)
Frame = +1
Query: 115 MTEQAISFAKDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVR 294
MT+ +SF KDFLAGG++AAISKTAVAPIERVKLLLQVQHASKQI ADKQYKGI+DC+VR
Sbjct: 1 MTDATVSFTKDFLAGGVSAAISKTAVAPIERVKLLLQVQHASKQITADKQYKGIIDCVVR 60
Query: 295 IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFXXXXXXX 474
IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFL
Sbjct: 61 IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFL-------------------- 100
Query: 475 XXXXXTSLCFVYPLDFARTRLAADVGKSATEREFKGLGDCLVKITKSDGIRGLYQGFNVS 654
ADVGK+ EREF+GLGDCLVKI KSDGIRGLYQGFNVS
Sbjct: 101 ----------------------ADVGKAGAEREFRGLGDCLVKIYKSDGIRGLYQGFNVS 138
Query: 655 VQGIIIYRAAYFGVYDTAKGMLPDPRNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMM 834
VQGIIIYRAAYFG+YDTAKGMLPDP+NTHI +SWMIAQ+VTAVAG+ SYPFDTVRRRMMM
Sbjct: 139 VQGIIIYRAAYFGIYDTAKGMLPDPKNTHIFISWMIAQSVTAVAGLTSYPFDTVRRRMMM 198
Query: 835 QSGRKGADIMYKGTLDCWRKIFKDEGGKAFFKGAWSNVLRGMGGAFVLVLYDELKK 1002
QSGRKG DIMY GTLDCWRKI +DEGGKAFFKGAWSNVLRGMGGAFVLVLYDE+KK
Sbjct: 199 QSGRKGTDIMYTGTLDCWRKIARDEGGKAFFKGAWSNVLRGMGGAFVLVLYDEIKK 254
>ref|XP_864129.1| PREDICTED: similar to ADP/ATP translocase 2 (Adenine nucleotide
translocator 2) (ANT 2) (ADP,ATP carrier protein 2)
(Solute carrier family 25, member 5) (ADP,ATP carrier
protein, fibroblast isoform) isoform 3 [Canis
familiaris].
Length = 251
Score = 422 bits (1085), Expect = e-118
Identities = 216/296 (72%), Positives = 227/296 (76%)
Frame = +1
Query: 115 MTEQAISFAKDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVR 294
MT+ +SF KDFLAGG++AAISKTAVAPIERVKLLLQVQHASKQI ADKQYKGI+DC+VR
Sbjct: 1 MTDATVSFTKDFLAGGVSAAISKTAVAPIERVKLLLQVQHASKQITADKQYKGIIDCVVR 60
Query: 295 IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFXXXXXXX 474
IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDK TQFWRYF
Sbjct: 61 IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKRTQFWRYFAGNLASG 120
Query: 475 XXXXXTSLCFVYPLDFARTRLAADVGKSATEREFKGLGDCLVKITKSDGIRGLYQGFNVS 654
TSLCFVYPLDFARTRLAADVGK+ EREF+GLGDCLVKI KSDGIRGLYQGFNVS
Sbjct: 121 GAAGATSLCFVYPLDFARTRLAADVGKAGAEREFRGLGDCLVKIYKSDGIRGLYQGFNVS 180
Query: 655 VQGIIIYRAAYFGVYDTAKGMLPDPRNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMM 834
VQGIIIYRAAYFG+YDTAK
Sbjct: 181 VQGIIIYRAAYFGIYDTAK----------------------------------------- 199
Query: 835 QSGRKGADIMYKGTLDCWRKIFKDEGGKAFFKGAWSNVLRGMGGAFVLVLYDELKK 1002
ADIMY GTLDCWRKI +DEGGKAFFKGAWSNVLRGMGGAFVLVLYDE+KK
Sbjct: 200 ------ADIMYTGTLDCWRKIARDEGGKAFFKGAWSNVLRGMGGAFVLVLYDEIKK 249
>ref|XP_540952.2| PREDICTED: similar to solute carrier family 25 (mitochondrial
carrier; adenine nucleotide translocator), member 31
[Canis familiaris].
Length = 459
Score = 417 bits (1071), Expect = e-116
Identities = 200/292 (68%), Positives = 239/292 (81%)
Frame = +1
Query: 133 SFAKDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVRIPKEQG 312
SF KD LAGG+AAA+SKTAVAPIERVKLLLQVQ +SKQI+A+ QYKG++DC+VRIP+EQG
Sbjct: 159 SFGKDLLAGGVAAAVSKTAVAPIERVKLLLQVQASSKQISAETQYKGMMDCLVRIPREQG 218
Query: 313 VLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFXXXXXXXXXXXXT 492
S+WRGNLANVIRYFPTQALNFAFKDKYKQ+F+ GV+K QFWR+F T
Sbjct: 219 FFSYWRGNLANVIRYFPTQALNFAFKDKYKQLFMSGVNKEKQFWRWFLANLASGGAAGAT 278
Query: 493 SLCFVYPLDFARTRLAADVGKSATEREFKGLGDCLVKITKSDGIRGLYQGFNVSVQGIII 672
SLC VYPLDFARTRL D+GK ER+FKGLGDC++KI KSDGI GLYQGF VSVQGI++
Sbjct: 279 SLCVVYPLDFARTRLGVDIGKGPEERQFKGLGDCIIKIAKSDGIVGLYQGFGVSVQGIVV 338
Query: 673 YRAAYFGVYDTAKGMLPDPRNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMMQSGRKG 852
YRA+YFG YDT KG+LP P+ T +VS+ IAQ VT +G++SYPFDTVRRRMMMQSG
Sbjct: 339 YRASYFGAYDTVKGLLPKPKETPFLVSFFIAQVVTTCSGILSYPFDTVRRRMMMQSGE-- 396
Query: 853 ADIMYKGTLDCWRKIFKDEGGKAFFKGAWSNVLRGMGGAFVLVLYDELKKVI 1008
+ YKGTLDC+ KI++ EG AFF+GA+SN+LRG GGA VLVLYD++K+ +
Sbjct: 397 VERQYKGTLDCFVKIYQHEGVNAFFRGAFSNILRGTGGALVLVLYDKIKEFL 448
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,879,981
Number of extensions: 965996
Number of successful extensions: 4793
Number of sequences better than 1.0e-05: 71
Number of HSP's gapped: 4499
Number of HSP's successfully gapped: 93
Length of query: 388
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 283
Effective length of database: 15,374,224
Effective search space: 4350905392
Effective search space used: 4350905392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001801
(1166 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001627.2| ADP/ATP translocase 3 [Homo sapiens]. 561 e-160
Alignment gi|NP_001143.2| ADP/ATP translocase 2 [Homo sapiens]. 533 e-151
Alignment gi|NP_001142.2| ADP/ATP translocase 1 [Homo sapiens]. 520 e-147
Alignment gi|NP_112581.1| ADP/ATP translocase 4 [Homo sapiens]. 416 e-116
Alignment gi|NP_998816.1| calcium-binding mitochondrial carrier protein S... 122 8e-28
Alignment gi|NP_037518.3| calcium-binding mitochondrial carrier protein S... 122 8e-28
Alignment gi|NP_077008.2| calcium-binding mitochondrial carrier protein S... 108 1e-23
Alignment gi|NP_848621.2| solute carrier family 25 member 42 [Homo sapien... 102 7e-22
Alignment gi|NP_001006643.1| calcium-binding mitochondrial carrier protei... 100 2e-21
Alignment gi|NP_001006644.1| calcium-binding mitochondrial carrier protei... 100 2e-21
>ref|NP_001627.2| ADP/ATP translocase 3 [Homo sapiens].
Length = 298
Score = 561 bits (1446), Expect = e-160
Identities = 279/298 (93%), Positives = 284/298 (95%)
Frame = +1
Query: 115 MTEQAISFAKDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVR 294
MTEQAISFAKDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVR
Sbjct: 1 MTEQAISFAKDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVR 60
Query: 295 IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFXXXXXXX 474
IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYF
Sbjct: 61 IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFAGNLASG 120
Query: 475 XXXXXTSLCFVYPLDFARTRLAADVGKSATEREFKGLGDCLVKITKSDGIRGLYQGFNVS 654
TSLCFVYPLDFARTRLAADVGKS TEREF+GLGDCLVKITKSDGIRGLYQGF+VS
Sbjct: 121 GAAGATSLCFVYPLDFARTRLAADVGKSGTEREFRGLGDCLVKITKSDGIRGLYQGFSVS 180
Query: 655 VQGIIIYRAAYFGVYDTAKGMLPDPRNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMM 834
VQGIIIYRAAYFGVYDTAKGMLPDP+NTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMM
Sbjct: 181 VQGIIIYRAAYFGVYDTAKGMLPDPKNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMM 240
Query: 835 QSGRKGADIMYKGTLDCWRKIFKDEGGKAFFKGAWSNVLRGMGGAFVLVLYDELKKVI 1008
QSGRKGADIMY GT+DCWRKIF+DEGGKAFFKGAWSNVLRGMGGAFVLVLYDELKKVI
Sbjct: 241 QSGRKGADIMYTGTVDCWRKIFRDEGGKAFFKGAWSNVLRGMGGAFVLVLYDELKKVI 298
>ref|NP_001143.2| ADP/ATP translocase 2 [Homo sapiens].
Length = 298
Score = 533 bits (1373), Expect = e-151
Identities = 259/296 (87%), Positives = 273/296 (92%)
Frame = +1
Query: 115 MTEQAISFAKDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVR 294
MT+ A+SFAKDFLAGG+AAAISKTAVAPIERVKLLLQVQHASKQI ADKQYKGI+DC+VR
Sbjct: 1 MTDAAVSFAKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQITADKQYKGIIDCVVR 60
Query: 295 IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFXXXXXXX 474
IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDK TQFW YF
Sbjct: 61 IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKRTQFWLYFAGNLASG 120
Query: 475 XXXXXTSLCFVYPLDFARTRLAADVGKSATEREFKGLGDCLVKITKSDGIRGLYQGFNVS 654
TSLCFVYPLDFARTRLAADVGK+ EREF+GLGDCLVKI KSDGI+GLYQGFNVS
Sbjct: 121 GAAGATSLCFVYPLDFARTRLAADVGKAGAEREFRGLGDCLVKIYKSDGIKGLYQGFNVS 180
Query: 655 VQGIIIYRAAYFGVYDTAKGMLPDPRNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMM 834
VQGIIIYRAAYFG+YDTAKGMLPDP+NTHIV+SWMIAQTVTAVAG+ SYPFDTVRRRMMM
Sbjct: 181 VQGIIIYRAAYFGIYDTAKGMLPDPKNTHIVISWMIAQTVTAVAGLTSYPFDTVRRRMMM 240
Query: 835 QSGRKGADIMYKGTLDCWRKIFKDEGGKAFFKGAWSNVLRGMGGAFVLVLYDELKK 1002
QSGRKG DIMY GTLDCWRKI +DEGGKAFFKGAWSNVLRGMGGAFVLVLYDE+KK
Sbjct: 241 QSGRKGTDIMYTGTLDCWRKIARDEGGKAFFKGAWSNVLRGMGGAFVLVLYDEIKK 296
>ref|NP_001142.2| ADP/ATP translocase 1 [Homo sapiens].
Length = 298
Score = 520 bits (1338), Expect = e-147
Identities = 251/298 (84%), Positives = 270/298 (90%)
Frame = +1
Query: 115 MTEQAISFAKDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVR 294
M + A SF KDFLAGG+AAA+SKTAVAPIERVKLLLQVQHASKQI+A+KQYKGI+DC+VR
Sbjct: 1 MGDHAWSFLKDFLAGGVAAAVSKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVR 60
Query: 295 IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFXXXXXXX 474
IPKEQG LSFWRGNLANVIRYFPTQALNFAFKDKYKQ+FLGGVD+H QFWRYF
Sbjct: 61 IPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQLFLGGVDRHKQFWRYFAGNLASG 120
Query: 475 XXXXXTSLCFVYPLDFARTRLAADVGKSATEREFKGLGDCLVKITKSDGIRGLYQGFNVS 654
TSLCFVYPLDFARTRLAADVGK A +REF GLGDC++KI KSDG+RGLYQGFNVS
Sbjct: 121 GAAGATSLCFVYPLDFARTRLAADVGKGAAQREFHGLGDCIIKIFKSDGLRGLYQGFNVS 180
Query: 655 VQGIIIYRAAYFGVYDTAKGMLPDPRNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMM 834
VQGIIIYRAAYFGVYDTAKGMLPDP+N HI VSWMIAQ+VTAVAG+VSYPFDTVRRRMMM
Sbjct: 181 VQGIIIYRAAYFGVYDTAKGMLPDPKNVHIFVSWMIAQSVTAVAGLVSYPFDTVRRRMMM 240
Query: 835 QSGRKGADIMYKGTLDCWRKIFKDEGGKAFFKGAWSNVLRGMGGAFVLVLYDELKKVI 1008
QSGRKGADIMY GT+DCWRKI KDEG KAFFKGAWSNVLRGMGGAFVLVLYDE+KK +
Sbjct: 241 QSGRKGADIMYTGTVDCWRKIAKDEGAKAFFKGAWSNVLRGMGGAFVLVLYDEIKKYV 298
>ref|NP_112581.1| ADP/ATP translocase 4 [Homo sapiens].
Length = 315
Score = 416 bits (1068), Expect = e-116
Identities = 203/292 (69%), Positives = 238/292 (81%)
Frame = +1
Query: 127 AISFAKDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVRIPKE 306
A SF KD LAGG+AAA+SKTAVAPIERVKLLLQVQ +SKQI+ + +YKG+VDC+VRIP+E
Sbjct: 17 ASSFGKDLLAGGVAAAVSKTAVAPIERVKLLLQVQASSKQISPEARYKGMVDCLVRIPRE 76
Query: 307 QGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFXXXXXXXXXXX 486
QG SFWRGNLANVIRYFPTQALNFAFKDKYKQ+F+ GV+K QFWR+F
Sbjct: 77 QGFFSFWRGNLANVIRYFPTQALNFAFKDKYKQLFMSGVNKEKQFWRWFLANLASGGAAG 136
Query: 487 XTSLCFVYPLDFARTRLAADVGKSATEREFKGLGDCLVKITKSDGIRGLYQGFNVSVQGI 666
TSLC VYPLDFARTRL D+GK ER+FKGLGDC++KI KSDGI GLYQGF VSVQGI
Sbjct: 137 ATSLCVVYPLDFARTRLGVDIGKGPEERQFKGLGDCIMKIAKSDGIAGLYQGFGVSVQGI 196
Query: 667 IIYRAAYFGVYDTAKGMLPDPRNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMMQSGR 846
I+YRA+YFG YDT KG+LP P+ T +VS+ IAQ VT +G++SYPFDTVRRRMMMQSG
Sbjct: 197 IVYRASYFGAYDTVKGLLPKPKKTPFLVSFFIAQVVTTCSGILSYPFDTVRRRMMMQSGE 256
Query: 847 KGADIMYKGTLDCWRKIFKDEGGKAFFKGAWSNVLRGMGGAFVLVLYDELKK 1002
A YKGTLDC+ KI++ EG +FF+GA+SNVLRG GGA VLVLYD++K+
Sbjct: 257 --AKRQYKGTLDCFVKIYQHEGISSFFRGAFSNVLRGTGGALVLVLYDKIKE 306
>ref|NP_998816.1| calcium-binding mitochondrial carrier protein SCaMC-1 isoform 2 [Homo
sapiens].
Length = 458
Score = 122 bits (305), Expect = 8e-28
Identities = 88/295 (29%), Positives = 147/295 (49%), Gaps = 6/295 (2%)
Frame = +1
Query: 142 KDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVRIPKEQGVLS 321
+ LAGGIA A+S+T+ AP++R+K+++QV H SK +DK I ++ KE G+ S
Sbjct: 177 RQLLAGGIAGAVSRTSTAPLDRLKIMMQV-HGSK---SDKM--NIFGGFRQMVKEGGIRS 230
Query: 322 FWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFXXXXXXXXXXXXTSLC 501
WRGN NVI+ P A+ F ++YK++ K F R+ T+
Sbjct: 231 LWRGNGTNVIKIAPETAVKFWAYEQYKKLLTEEGQKIGTFERFI-----SGSMAGATAQT 285
Query: 502 FVYPLDFARTRLAADVGKSATEREFKGLGDCLVKITKSDGIRGLYQGFNVSVQGIIIYRA 681
F+YP++ +TRLA VGK+ ++ G+ DC KI K +G+ Y+G+ ++ GII Y
Sbjct: 286 FIYPMEVMKTRLA--VGKTG---QYSGIYDCAKKILKHEGLGAFYKGYVPNLLGIIPYAG 340
Query: 682 AYFGVYDTAK-----GMLPDPRNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMMQSGR 846
VY+ K D N ++V + + SYP VR RM Q+
Sbjct: 341 IDLAVYELLKSYWLDNFAKDSVNPGVMVLLGCGALSSTCGQLASYPLALVRTRMQAQAML 400
Query: 847 KGADIMYKGTLDCWRKIFKDEGGKAFFKGAWSNVLRGMGGAFV-LVLYDELKKVI 1008
+G+ + + +R+I EG ++G N ++ + + V+Y+ +K+ +
Sbjct: 401 EGSPQL--NMVGLFRRIISKEGIPGLYRGITPNFMKVLPAVGISYVVYENMKQTL 453
>ref|NP_037518.3| calcium-binding mitochondrial carrier protein SCaMC-1 isoform 1 [Homo
sapiens].
Length = 477
Score = 122 bits (305), Expect = 8e-28
Identities = 88/295 (29%), Positives = 147/295 (49%), Gaps = 6/295 (2%)
Frame = +1
Query: 142 KDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVRIPKEQGVLS 321
+ LAGGIA A+S+T+ AP++R+K+++QV H SK +DK I ++ KE G+ S
Sbjct: 196 RQLLAGGIAGAVSRTSTAPLDRLKIMMQV-HGSK---SDKM--NIFGGFRQMVKEGGIRS 249
Query: 322 FWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFXXXXXXXXXXXXTSLC 501
WRGN NVI+ P A+ F ++YK++ K F R+ T+
Sbjct: 250 LWRGNGTNVIKIAPETAVKFWAYEQYKKLLTEEGQKIGTFERFI-----SGSMAGATAQT 304
Query: 502 FVYPLDFARTRLAADVGKSATEREFKGLGDCLVKITKSDGIRGLYQGFNVSVQGIIIYRA 681
F+YP++ +TRLA VGK+ ++ G+ DC KI K +G+ Y+G+ ++ GII Y
Sbjct: 305 FIYPMEVMKTRLA--VGKTG---QYSGIYDCAKKILKHEGLGAFYKGYVPNLLGIIPYAG 359
Query: 682 AYFGVYDTAK-----GMLPDPRNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMMQSGR 846
VY+ K D N ++V + + SYP VR RM Q+
Sbjct: 360 IDLAVYELLKSYWLDNFAKDSVNPGVMVLLGCGALSSTCGQLASYPLALVRTRMQAQAML 419
Query: 847 KGADIMYKGTLDCWRKIFKDEGGKAFFKGAWSNVLRGMGGAFV-LVLYDELKKVI 1008
+G+ + + +R+I EG ++G N ++ + + V+Y+ +K+ +
Sbjct: 420 EGSPQL--NMVGLFRRIISKEGIPGLYRGITPNFMKVLPAVGISYVVYENMKQTL 472
>ref|NP_077008.2| calcium-binding mitochondrial carrier protein SCaMC-3 [Homo sapiens].
Length = 468
Score = 108 bits (269), Expect = 1e-23
Identities = 88/318 (27%), Positives = 148/318 (46%), Gaps = 11/318 (3%)
Frame = +1
Query: 88 GRCAARPATMTEQAI---SFAKDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAAD 258
G C P ++Q + K +AG +A A+S+T AP++R+K+ +QV HASK +
Sbjct: 166 GECLTVPDEFSKQEKLTGMWWKQLVAGAVAGAVSRTGTAPLDRLKVFMQV-HASKTNRLN 224
Query: 259 KQYKGIVDCIVRIPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDK-HT 435
I+ + + E G+ S WRGN NV++ P A+ F ++ K+ LG + H
Sbjct: 225 -----ILGGLRSMVLEGGIRSLWRGNGINVLKIAPESAIKFMAYEQIKRAILGQQETLHV 279
Query: 436 QFWRYFXXXXXXXXXXXXTSLCFVYPLDFARTRLAADVGKSATEREFKGLGDCLVKITKS 615
Q T+ +YP++ +TRL ++KGL DC +I +
Sbjct: 280 Q------ERFVAGSLAGATAQTIIYPMEVLKTRLTL-----RRTGQYKGLLDCARRILER 328
Query: 616 DGIRGLYQGFNVSVQGIIIYRAAYFGVYDTAKG-----MLPDPRNTHIVVSWMIAQTVTA 780
+G R Y+G+ +V GII Y VY+T K D + I+V + T+++
Sbjct: 329 EGPRAFYRGYLPNVLGIIPYAGIDLAVYETLKNWWLQQYSHDSADPGILV-LLACGTISS 387
Query: 781 VAG-VVSYPFDTVRRRMMMQSGRKGADIMYKGTLDCWRKIFKDEGGKAFFKGAWSNVLRG 957
G + SYP VR RM Q+ +G + L R I EG + ++G N ++
Sbjct: 388 TCGQIASYPLALVRTRMQAQASIEGGPQL--SMLGLLRHILSQEGMRGLYRGIAPNFMKV 445
Query: 958 MGGAFV-LVLYDELKKVI 1008
+ + V+Y+ +K+ +
Sbjct: 446 IPAVSISYVVYENMKQAL 463
>ref|NP_848621.2| solute carrier family 25 member 42 [Homo sapiens].
Length = 318
Score = 102 bits (254), Expect = 7e-22
Identities = 78/277 (28%), Positives = 129/277 (46%), Gaps = 8/277 (2%)
Frame = +1
Query: 151 LAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVRIPKEQGVLSFWR 330
L+G +A A++KTAVAP++R K++ QV +SK+ +A + ++ + + +G LS WR
Sbjct: 38 LSGALAGALAKTAVAPLDRTKIIFQV--SSKRFSAKEAFRVLYYTYLN----EGFLSLWR 91
Query: 331 GNLANVIRYFPTQALNFAFKDKYKQI---FLGGVDKHTQFW-RYFXXXXXXXXXXXXTSL 498
GN A ++R P A+ F+ ++YK+I + G + W R F T+
Sbjct: 92 GNSATMVRVVPYAAIQFSAHEEYKRILGSYYGFRGEALPPWPRLF-----AGALAGTTAA 146
Query: 499 CFVYPLDFARTRLAADVGKSATEREFKGLGDCLVKITKSDGIRGLYQGFNVSVQGIIIYR 678
YPLD R R+A + + + ++I++ +G++ LY GF +V G+I Y
Sbjct: 147 SLTYPLDLVRARMAV-----TPKEMYSNIFHVFIRISREEGLKTLYHGFMPTVLGVIPYA 201
Query: 679 AAYFGVYDTAKGM---LPDPRNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMMQSGRK 849
F Y+T K + R + + + SYP D VRRRM
Sbjct: 202 GLSFFTYETLKSLHREYSGRRQPYPFERMIFGACAGLIGQSASYPLDVVRRRMQTAGVTG 261
Query: 850 GADIMYKGTLDCWRKIFKDEGG-KAFFKGAWSNVLRG 957
TL R I ++EG + +KG N ++G
Sbjct: 262 YPRASIARTL---RTIVREEGAVRGLYKGLSMNWVKG 295
>ref|NP_001006643.1| calcium-binding mitochondrial carrier protein SCaMC-2 isoform c [Homo
sapiens].
Length = 489
Score = 100 bits (250), Expect = 2e-21
Identities = 83/296 (28%), Positives = 140/296 (47%), Gaps = 10/296 (3%)
Frame = +1
Query: 142 KDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVRIPKEQGVLS 321
+ +AGG A A+S+T AP++R+K+L+QV HAS+ GIV ++ +E G S
Sbjct: 208 RHLVAGGGAGAVSRTCTAPLDRLKVLMQV-HASRS-----NNMGIVGGFTQMIREGGARS 261
Query: 322 FWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFXXXXXXXXXXXXTSLC 501
WRGN NV++ P A+ F ++ K+ L G D+ T +S
Sbjct: 262 LWRGNGINVLKIAPESAIKFMAYEQIKR--LVGSDQETLRIHERLVAGSLAGAIAQSS-- 317
Query: 502 FVYPLDFARTRLAADVGKSATEREFKGLGDCLVKITKSDGIRGLYQGFNVSVQGIIIYRA 681
+YP++ +TR+A ++ G+ DC +I +G+ Y+G+ ++ GII Y
Sbjct: 318 -IYPMEVLKTRMAL-----RKTGQYSGMLDCARRILAREGVAAFYKGYVPNMLGIIPYAG 371
Query: 682 AYFGVYDTAKGM--------LPDPRNTHIVVSWMIAQTVTAVAG-VVSYPFDTVRRRMMM 834
VY+T K DP V + T+++ G + SYP VR RM
Sbjct: 372 IDLAVYETLKNAWLQHYAVNSADPG----VFVLLACGTMSSTCGQLASYPLALVRTRMQA 427
Query: 835 QSGRKGADIMYKGTLDCWRKIFKDEGGKAFFKGAWSNVLRGMGGAFV-LVLYDELK 999
Q+ +GA + +L ++ I + EG ++G N ++ + + V+Y+ LK
Sbjct: 428 QASIEGAPEVTMSSL--FKHILRTEGAFGLYRGLAPNFMKVIPAVSISYVVYENLK 481
Score = 57.0 bits (136), Expect = 3e-08
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 1/198 (0%)
Frame = +1
Query: 121 EQAISFAKDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVRIP 300
++ + + +AG +A AI+++++ P+E +K + ++ QY G++DC RI
Sbjct: 295 QETLRIHERLVAGSLAGAIAQSSIYPMEVLKTRMALRKTG-------QYSGMLDCARRIL 347
Query: 301 KEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFXXXXXXXXX 480
+GV +F++G + N++ P ++ A + K +L ++ F
Sbjct: 348 AREGVAAFYKGYVPNMLGIIPYAGIDLAVYETLKNAWLQHYAVNSADPGVFVLLACGTMS 407
Query: 481 XXXTSLCFVYPLDFARTRLAADVG-KSATEREFKGLGDCLVKITKSDGIRGLYQGFNVSV 657
L YPL RTR+ A + A E L I +++G GLY+G +
Sbjct: 408 STCGQLA-SYPLALVRTRMQAQASIEGAPEVTMSSL---FKHILRTEGAFGLYRGLAPNF 463
Query: 658 QGIIIYRAAYFGVYDTAK 711
+I + + VY+ K
Sbjct: 464 MKVIPAVSISYVVYENLK 481
>ref|NP_001006644.1| calcium-binding mitochondrial carrier protein SCaMC-2 isoform d
[Homo sapiens].
Length = 366
Score = 100 bits (250), Expect = 2e-21
Identities = 83/296 (28%), Positives = 140/296 (47%), Gaps = 10/296 (3%)
Frame = +1
Query: 142 KDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVRIPKEQGVLS 321
+ +AGG A A+S+T AP++R+K+L+QV HAS+ GIV ++ +E G S
Sbjct: 85 RHLVAGGGAGAVSRTCTAPLDRLKVLMQV-HASRS-----NNMGIVGGFTQMIREGGARS 138
Query: 322 FWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFXXXXXXXXXXXXTSLC 501
WRGN NV++ P A+ F ++ K+ L G D+ T +S
Sbjct: 139 LWRGNGINVLKIAPESAIKFMAYEQIKR--LVGSDQETLRIHERLVAGSLAGAIAQSS-- 194
Query: 502 FVYPLDFARTRLAADVGKSATEREFKGLGDCLVKITKSDGIRGLYQGFNVSVQGIIIYRA 681
+YP++ +TR+A ++ G+ DC +I +G+ Y+G+ ++ GII Y
Sbjct: 195 -IYPMEVLKTRMAL-----RKTGQYSGMLDCARRILAREGVAAFYKGYVPNMLGIIPYAG 248
Query: 682 AYFGVYDTAKGM--------LPDPRNTHIVVSWMIAQTVTAVAG-VVSYPFDTVRRRMMM 834
VY+T K DP V + T+++ G + SYP VR RM
Sbjct: 249 IDLAVYETLKNAWLQHYAVNSADPG----VFVLLACGTMSSTCGQLASYPLALVRTRMQA 304
Query: 835 QSGRKGADIMYKGTLDCWRKIFKDEGGKAFFKGAWSNVLRGMGGAFV-LVLYDELK 999
Q+ +GA + +L ++ I + EG ++G N ++ + + V+Y+ LK
Sbjct: 305 QASIEGAPEVTMSSL--FKHILRTEGAFGLYRGLAPNFMKVIPAVSISYVVYENLK 358
Score = 57.0 bits (136), Expect = 3e-08
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 1/198 (0%)
Frame = +1
Query: 121 EQAISFAKDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVRIP 300
++ + + +AG +A AI+++++ P+E +K + ++ QY G++DC RI
Sbjct: 172 QETLRIHERLVAGSLAGAIAQSSIYPMEVLKTRMALRKTG-------QYSGMLDCARRIL 224
Query: 301 KEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFXXXXXXXXX 480
+GV +F++G + N++ P ++ A + K +L ++ F
Sbjct: 225 AREGVAAFYKGYVPNMLGIIPYAGIDLAVYETLKNAWLQHYAVNSADPGVFVLLACGTMS 284
Query: 481 XXXTSLCFVYPLDFARTRLAADVG-KSATEREFKGLGDCLVKITKSDGIRGLYQGFNVSV 657
L YPL RTR+ A + A E L I +++G GLY+G +
Sbjct: 285 STCGQLA-SYPLALVRTRMQAQASIEGAPEVTMSSL---FKHILRTEGAFGLYRGLAPNF 340
Query: 658 QGIIIYRAAYFGVYDTAK 711
+I + + VY+ K
Sbjct: 341 MKVIPAVSISYVVYENLK 358
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,772,458
Number of extensions: 928768
Number of successful extensions: 4437
Number of sequences better than 1.0e-05: 57
Number of HSP's gapped: 4206
Number of HSP's successfully gapped: 88
Length of query: 388
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 284
Effective length of database: 14,868,908
Effective search space: 4222769872
Effective search space used: 4222769872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001801
(1166 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031477.1| ADP/ATP translocase 2 [Mus musculus]. 531 e-151
Alignment gi|NP_031476.3| ADP/ATP translocase 1 [Mus musculus]. 521 e-148
Alignment gi|NP_848473.2| ADP/ATP translocase 4 [Mus musculus]. 412 e-115
Alignment gi|NP_766273.1| calcium-binding mitochondrial carrier protein S... 116 3e-26
Alignment gi|NP_080153.2| calcium-binding mitochondrial carrier protein S... 106 3e-23
Alignment gi|NP_780542.1| solute carrier family 25 member 41 [Mus musculu... 105 9e-23
Alignment gi|NP_001007571.1| solute carrier family 25 member 42 [Mus musc... 103 2e-22
Alignment gi|NP_035528.1| brain mitochondrial carrier protein 1 isoform 2... 101 1e-21
Alignment gi|NP_001159922.1| brain mitochondrial carrier protein 1 isofor... 101 1e-21
Alignment gi|NP_780403.1| graves disease carrier protein homolog [Mus mus... 100 2e-21
>ref|NP_031477.1| ADP/ATP translocase 2 [Mus musculus].
Length = 298
Score = 531 bits (1368), Expect = e-151
Identities = 258/296 (87%), Positives = 272/296 (91%)
Frame = +1
Query: 115 MTEQAISFAKDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVR 294
MT+ A+SFAKDFLAGG+AAAISKTAVAPIERVKLLLQVQHASKQI ADKQYKGI+DC+VR
Sbjct: 1 MTDAAVSFAKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQITADKQYKGIIDCVVR 60
Query: 295 IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFXXXXXXX 474
IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDK TQFWRYF
Sbjct: 61 IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKRTQFWRYFAGNLASG 120
Query: 475 XXXXXTSLCFVYPLDFARTRLAADVGKSATEREFKGLGDCLVKITKSDGIRGLYQGFNVS 654
TSLCFVYPLDFARTRLAADVGK+ EREFKGLGDCLVKI KSDGI+GLYQGFNVS
Sbjct: 121 GAAGATSLCFVYPLDFARTRLAADVGKAGAEREFKGLGDCLVKIYKSDGIKGLYQGFNVS 180
Query: 655 VQGIIIYRAAYFGVYDTAKGMLPDPRNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMM 834
VQGIIIYRAAYFG+YDTAKGMLPDP+NTHI +SWMIAQ+VTAVAG+ SYPFDTVRRRMMM
Sbjct: 181 VQGIIIYRAAYFGIYDTAKGMLPDPKNTHIFISWMIAQSVTAVAGLTSYPFDTVRRRMMM 240
Query: 835 QSGRKGADIMYKGTLDCWRKIFKDEGGKAFFKGAWSNVLRGMGGAFVLVLYDELKK 1002
QSGRKG DIMY GTLDCWRKI +DEG KAFFKGAWSNVLRGMGGAFVLVLYDE+KK
Sbjct: 241 QSGRKGTDIMYTGTLDCWRKIARDEGSKAFFKGAWSNVLRGMGGAFVLVLYDEIKK 296
>ref|NP_031476.3| ADP/ATP translocase 1 [Mus musculus].
Length = 298
Score = 521 bits (1343), Expect = e-148
Identities = 252/298 (84%), Positives = 272/298 (91%)
Frame = +1
Query: 115 MTEQAISFAKDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVR 294
M +QA+SF KDFLAGGIAAA+SKTAVAPIERVKLLLQVQHASKQI+A+KQYKGI+DC+VR
Sbjct: 1 MGDQALSFLKDFLAGGIAAAVSKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVR 60
Query: 295 IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFXXXXXXX 474
IPKEQG LSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVD+H QFWRYF
Sbjct: 61 IPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASG 120
Query: 475 XXXXXTSLCFVYPLDFARTRLAADVGKSATEREFKGLGDCLVKITKSDGIRGLYQGFNVS 654
TSLCFVYPLDFARTRLAADVGK +++REF GLGDCL KI KSDG++GLYQGF+VS
Sbjct: 121 GAAGATSLCFVYPLDFARTRLAADVGKGSSQREFNGLGDCLTKIFKSDGLKGLYQGFSVS 180
Query: 655 VQGIIIYRAAYFGVYDTAKGMLPDPRNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMM 834
VQGIIIYRAAYFGVYDTAKGMLPDP+N HI+VSWMIAQ+VTAVAG+VSYPFDTVRRRMMM
Sbjct: 181 VQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQSVTAVAGLVSYPFDTVRRRMMM 240
Query: 835 QSGRKGADIMYKGTLDCWRKIFKDEGGKAFFKGAWSNVLRGMGGAFVLVLYDELKKVI 1008
QSGRKGADIMY GTLDCWRKI KDEG AFFKGAWSNVLRGMGGAFVLVLYDE+KK +
Sbjct: 241 QSGRKGADIMYTGTLDCWRKIAKDEGANAFFKGAWSNVLRGMGGAFVLVLYDEIKKYV 298
>ref|NP_848473.2| ADP/ATP translocase 4 [Mus musculus].
Length = 320
Score = 412 bits (1059), Expect = e-115
Identities = 196/293 (66%), Positives = 242/293 (82%)
Frame = +1
Query: 130 ISFAKDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVRIPKEQ 309
+SF+KD LAGG+AAA+SKTAVAPIERVKLLLQVQ +SKQI+ + +YKG++DC+VRIP+EQ
Sbjct: 19 VSFSKDLLAGGVAAAVSKTAVAPIERVKLLLQVQASSKQISPEARYKGMLDCLVRIPREQ 78
Query: 310 GVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFXXXXXXXXXXXX 489
G LS+WRGNLANVIRYFPTQALNFAFKDKYK++F+ GV+K QFWR+F
Sbjct: 79 GFLSYWRGNLANVIRYFPTQALNFAFKDKYKELFMSGVNKEKQFWRWFLANLASGGAAGA 138
Query: 490 TSLCFVYPLDFARTRLAADVGKSATEREFKGLGDCLVKITKSDGIRGLYQGFNVSVQGII 669
TSLC VYPLDFARTRL D+GK +R+F GLGDC++KI KSDG+ GLYQGF VSVQGII
Sbjct: 139 TSLCVVYPLDFARTRLGVDIGKGPEQRQFTGLGDCIMKIAKSDGLIGLYQGFGVSVQGII 198
Query: 670 IYRAAYFGVYDTAKGMLPDPRNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMMQSGRK 849
+YRA+YFG YDT KG+LP P+ T +VS++IAQ VT +G++SYPFDTVRRRMMMQSG
Sbjct: 199 VYRASYFGAYDTVKGLLPKPKETPFLVSFIIAQIVTTCSGILSYPFDTVRRRMMMQSGE- 257
Query: 850 GADIMYKGTLDCWRKIFKDEGGKAFFKGAWSNVLRGMGGAFVLVLYDELKKVI 1008
+D YKGT+DC+ KI++ EG AFF+GA+SN+LRG GGA VLVLYD++K+ +
Sbjct: 258 -SDRQYKGTIDCFLKIYRHEGVPAFFRGAFSNILRGTGGALVLVLYDKIKEFL 309
>ref|NP_766273.1| calcium-binding mitochondrial carrier protein SCaMC-1 [Mus musculus].
Length = 475
Score = 116 bits (291), Expect = 3e-26
Identities = 82/295 (27%), Positives = 141/295 (47%), Gaps = 6/295 (2%)
Frame = +1
Query: 142 KDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVRIPKEQGVLS 321
+ LAGG+A A+S+T+ AP++R+K+++QV H SK + ++ +V KE G+ S
Sbjct: 196 RQLLAGGVAGAVSRTSTAPLDRLKVMMQV-HGSKSMNIFGGFRQMV-------KEGGIRS 247
Query: 322 FWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFXXXXXXXXXXXXTSLC 501
WRGN NVI+ P A+ F ++YK++ K F R+ T+
Sbjct: 248 LWRGNGTNVIKIAPETAVKFWAYEQYKKLLTEEGQKLGTFERFI-----SGSMAGATAQT 302
Query: 502 FVYPLDFARTRLAADVGKSATEREFKGLGDCLVKITKSDGIRGLYQGFNVSVQGIIIYRA 681
F+YP++ +TRLA A ++ G+ C KI K +G Y+G+ ++ GII Y
Sbjct: 303 FIYPMEVLKTRLAV-----AKTGQYSGIYGCAKKILKHEGFGAFYKGYIPNLLGIIPYAG 357
Query: 682 AYFGVYDTAK-----GMLPDPRNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMMQSGR 846
VY+ K D N ++V + + SYP VR RM Q+
Sbjct: 358 IDLAVYELLKSYWLDNFAKDSVNPGVMVLLSCGALSSTCGQLASYPLALVRTRMQAQATV 417
Query: 847 KGADIMYKGTLDCWRKIFKDEGGKAFFKGAWSNVLRGMGGAFV-LVLYDELKKVI 1008
+GA + + +++I EG ++G N ++ + + V+Y+ +K+ +
Sbjct: 418 EGAPQL--SMVGLFQRIVSKEGVSGLYRGITPNFMKVLPAVGISYVVYENMKQTL 470
>ref|NP_080153.2| calcium-binding mitochondrial carrier protein SCaMC-3 [Mus musculus].
Length = 467
Score = 106 bits (265), Expect = 3e-23
Identities = 84/297 (28%), Positives = 137/297 (46%), Gaps = 8/297 (2%)
Frame = +1
Query: 142 KDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVRIPKEQGVLS 321
K +AG +A A+S+T AP++R+K+ +QV HASK + I+ + + +E GVLS
Sbjct: 186 KQLVAGAVAGAVSRTGTAPLDRLKVFMQV-HASKSNRLN-----ILGGLRNMIQEGGVLS 239
Query: 322 FWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDK-HTQFWRYFXXXXXXXXXXXXTSL 498
WRGN NV++ P A+ F ++ K+ G + H Q T+
Sbjct: 240 LWRGNGINVLKIAPESAIKFMAYEQIKRAIRGQQETLHVQ------ERFVAGSLAGATAQ 293
Query: 499 CFVYPLDFARTRLAADVGKSATEREFKGLGDCLVKITKSDGIRGLYQGFNVSVQGIIIYR 678
+YP++ +TRL ++KGL DC +I + +G R Y+G+ +V GII Y
Sbjct: 294 TIIYPMEVLKTRLTL-----RRTGQYKGLLDCAKRILEREGPRAFYRGYLPNVLGIIPYA 348
Query: 679 AAYFGVYDTAKG-----MLPDPRNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMMQSG 843
VY+T K + N I+V + + SYP VR RM Q+
Sbjct: 349 GIDLAVYETLKNRWLQQYSHESANPGILVLLGCGTISSTCGQIASYPLALVRTRMQAQAS 408
Query: 844 RKGA-DIMYKGTLDCWRKIFKDEGGKAFFKGAWSNVLRGMGGAFV-LVLYDELKKVI 1008
+G + G L R I EG ++G N ++ + + V+Y+ +K+ +
Sbjct: 409 IEGGPQVSMVGLL---RHILSQEGVWGLYRGIAPNFMKVIPAVSISYVVYENMKQAL 462
Score = 62.0 bits (149), Expect = 9e-10
Identities = 51/201 (25%), Positives = 86/201 (42%), Gaps = 1/201 (0%)
Frame = +1
Query: 121 EQAISFAKDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVRIP 300
++ + + F+AG +A A ++T + P+E +K L ++ QYKG++DC RI
Sbjct: 273 QETLHVQERFVAGSLAGATAQTIIYPMEVLKTRLTLRRTG-------QYKGLLDCAKRIL 325
Query: 301 KEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFXXXXXXXXX 480
+ +G +F+RG L NV+ P ++ A + K +L H
Sbjct: 326 EREGPRAFYRGYLPNVLGIIPYAGIDLAVYETLKNRWLQQY-SHESANPGILVLLGCGTI 384
Query: 481 XXXTSLCFVYPLDFARTRLAADVG-KSATEREFKGLGDCLVKITKSDGIRGLYQGFNVSV 657
YPL RTR+ A + + GL L I +G+ GLY+G +
Sbjct: 385 SSTCGQIASYPLALVRTRMQAQASIEGGPQVSMVGL---LRHILSQEGVWGLYRGIAPNF 441
Query: 658 QGIIIYRAAYFGVYDTAKGML 720
+I + + VY+ K L
Sbjct: 442 MKVIPAVSISYVVYENMKQAL 462
>ref|NP_780542.1| solute carrier family 25 member 41 [Mus musculus].
Length = 312
Score = 105 bits (261), Expect = 9e-23
Identities = 77/294 (26%), Positives = 140/294 (47%), Gaps = 5/294 (1%)
Frame = +1
Query: 142 KDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVRIPKEQGVLS 321
K L+G +A A+S+T AP++R ++ +QV ++SK ++ ++ + + +E GV S
Sbjct: 31 KFLLSGAMAGAVSRTGTAPLDRARVYMQV-YSSKS-----NFRNLLSGLRSLVQEGGVRS 84
Query: 322 FWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFXXXXXXXXXXXXTSLC 501
WRGN NV++ P A+ F+ ++ K F G H+ + F S
Sbjct: 85 LWRGNGINVLKIAPEYAIKFSVCEQSKNFFYG---VHSS--QLFQERVVAGSLAVAVSQT 139
Query: 502 FVYPLDFARTRLAADVGKSATEREFKGLGDCLVKITKSDGIRGLYQGFNVSVQGIIIYRA 681
+ P++ +TRL ++KGL DC +I + DG R LY+G+ ++ GII Y
Sbjct: 140 LINPMEVLKTRLTLRF-----TGQYKGLLDCARQILERDGTRALYRGYLPNMLGIIPYAC 194
Query: 682 AYFGVYDTAKGMLP----DPRNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMMQSGRK 849
VY+ + + D ++ +VS T + SYP VR RM Q +
Sbjct: 195 TDLAVYELLQCLWQKLGRDMKDPSGLVSLSSVTLSTTCGQMASYPLTLVRTRMQAQDTVE 254
Query: 850 GADIMYKGTLDCWRKIFKDEGGKAFFKGAWSNVLRGM-GGAFVLVLYDELKKVI 1008
G++ +G +++I +G ++G +L+ + G ++Y+ +KK +
Sbjct: 255 GSNPTMQGV---FKRILSQQGWPGLYRGMTPTLLKVLPAGGISYLVYEAMKKTL 305
>ref|NP_001007571.1| solute carrier family 25 member 42 [Mus musculus].
Length = 318
Score = 103 bits (258), Expect = 2e-22
Identities = 81/279 (29%), Positives = 133/279 (47%), Gaps = 10/279 (3%)
Frame = +1
Query: 151 LAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVRIPKEQGVLSFWR 330
L+G +A A++KTAVAP++R K++ QV +SK+ +A + ++ + + +G LS WR
Sbjct: 38 LSGALAGALAKTAVAPLDRTKIIFQV--SSKRFSAKEAFRLLYFTYLN----EGFLSLWR 91
Query: 331 GNLANVIRYFPTQALNFAFKDKYKQI---FLGGVDKHTQFWRYFXXXXXXXXXXXXTSLC 501
GN A ++R P A+ F+ ++YK+I + G + W T+
Sbjct: 92 GNSATMVRVIPYAAIQFSAHEEYKRILGHYYGFRGEALPPW----PRLLAGALAGTTAAS 147
Query: 502 FVYPLDFARTRLAADVGKSATEREFKGLGDCLVKITKSDGIRGLYQGFNVSVQGIIIYRA 681
YPLD R R+A + + + ++I++ +G++ LY GF +V G+I Y
Sbjct: 148 LTYPLDLVRARMAV-----TPKEMYSNIFHVFIRISREEGLKTLYFGFTPTVLGVIPYAG 202
Query: 682 AYFGVYDTAKGM------LPDPRNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMMQSG 843
F Y++ K + P P +V A + A SYP D VRRR M +G
Sbjct: 203 LSFFTYESLKSLHREYSGRPQPYPFERMVFGACAGLIGQSA---SYPLDVVRRR-MQTAG 258
Query: 844 RKGADIMYKGTLDCWRKIFKDEGG-KAFFKGAWSNVLRG 957
G + L R I ++EG + +KG N L+G
Sbjct: 259 VTGH--QHGSILSTLRSIVREEGAVRGLYKGLSMNWLKG 295
>ref|NP_035528.1| brain mitochondrial carrier protein 1 isoform 2 [Mus musculus].
Length = 322
Score = 101 bits (252), Expect = 1e-21
Identities = 84/297 (28%), Positives = 131/297 (44%), Gaps = 9/297 (3%)
Frame = +1
Query: 142 KDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADK-QYKGIVDCIVRIPKEQGVL 318
K F+ GG+A+ +++ P++ K LQVQ S + + +Y+G+ + RI KE+G+L
Sbjct: 39 KPFVYGGLASIVAEFGTFPVDLTKTRLQVQGQSIDVRFKEIKYRGMFHALFRIYKEEGIL 98
Query: 319 SFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFXXXXXXXXXXXXTSL 498
+ + G ++R + K++F+ ++ T S
Sbjct: 99 ALYSGIAPALLRQASYGTIKIGIYQSLKRLFVERLEDET-----LLINMICGVVSGVISS 153
Query: 499 CFVYPLDFARTRLAADVGKSATEREFKG-LGDCLVKITKSDGIRGLYQGFNVSVQGIIIY 675
P D + R+ A F+G + + I + +G RGL++G + Q I
Sbjct: 154 TIANPTDVLKIRMQAQGSL------FQGSMIGSFIDIYQQEGTRGLWRGVVPTAQRAAIV 207
Query: 676 RAAYFGVYDTAK------GMLPDPRNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMMQ 837
VYD K GML D TH V S+ T + S P D VR RMM Q
Sbjct: 208 VGVELPVYDITKKHLIVSGMLGDTILTHFVSSF----TCGLAGALASNPVDVVRTRMMNQ 263
Query: 838 SGRKGADIMYKGTLDCWRKIFKDEGGKAFFKGAWSNVLR-GMGGAFVLVLYDELKKV 1005
G +YKGTLD K++K EG A +KG W N LR G + Y++LK++
Sbjct: 264 RAIVGHVDLYKGTLDGILKMWKHEGFFALYKGFWPNWLRLGPWNIIFFITYEQLKRL 320
>ref|NP_001159922.1| brain mitochondrial carrier protein 1 isoform 1 [Mus musculus].
Length = 325
Score = 101 bits (252), Expect = 1e-21
Identities = 84/297 (28%), Positives = 131/297 (44%), Gaps = 9/297 (3%)
Frame = +1
Query: 142 KDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADK-QYKGIVDCIVRIPKEQGVL 318
K F+ GG+A+ +++ P++ K LQVQ S + + +Y+G+ + RI KE+G+L
Sbjct: 42 KPFVYGGLASIVAEFGTFPVDLTKTRLQVQGQSIDVRFKEIKYRGMFHALFRIYKEEGIL 101
Query: 319 SFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFXXXXXXXXXXXXTSL 498
+ + G ++R + K++F+ ++ T S
Sbjct: 102 ALYSGIAPALLRQASYGTIKIGIYQSLKRLFVERLEDET-----LLINMICGVVSGVISS 156
Query: 499 CFVYPLDFARTRLAADVGKSATEREFKG-LGDCLVKITKSDGIRGLYQGFNVSVQGIIIY 675
P D + R+ A F+G + + I + +G RGL++G + Q I
Sbjct: 157 TIANPTDVLKIRMQAQGSL------FQGSMIGSFIDIYQQEGTRGLWRGVVPTAQRAAIV 210
Query: 676 RAAYFGVYDTAK------GMLPDPRNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMMQ 837
VYD K GML D TH V S+ T + S P D VR RMM Q
Sbjct: 211 VGVELPVYDITKKHLIVSGMLGDTILTHFVSSF----TCGLAGALASNPVDVVRTRMMNQ 266
Query: 838 SGRKGADIMYKGTLDCWRKIFKDEGGKAFFKGAWSNVLR-GMGGAFVLVLYDELKKV 1005
G +YKGTLD K++K EG A +KG W N LR G + Y++LK++
Sbjct: 267 RAIVGHVDLYKGTLDGILKMWKHEGFFALYKGFWPNWLRLGPWNIIFFITYEQLKRL 323
>ref|NP_780403.1| graves disease carrier protein homolog [Mus musculus].
Length = 332
Score = 100 bits (250), Expect = 2e-21
Identities = 79/273 (28%), Positives = 120/273 (43%), Gaps = 20/273 (7%)
Frame = +1
Query: 76 APLSGRCAARPATMTEQAISFAKDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAA 255
AP + A + + + + FLAGGIA +KT VAP++RVK+LLQ A
Sbjct: 16 APAVPQAAGSGGPTSRRDFYWLRSFLAGGIAGCCAKTTVAPLDRVKVLLQ--------AH 67
Query: 256 DKQYK--GIVDCIVRIPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLG--GV 423
++ YK G++ + +P+++G L ++GN A +IR FP A+ F + YK GV
Sbjct: 68 NRHYKHLGVLSTLRAVPQKEGYLGLYKGNGAMMIRIFPYGAIQFMAFEHYKTFITTKLGV 127
Query: 424 DKHTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFARTRLAADVGKSATEREFKGLGDCLVK 603
H T++ YPLD R RLA V E + G+
Sbjct: 128 SGHVH-------RLMAGSMAGMTAVICTYPLDVVRVRLAFQV---KGEHTYSGIIHAFKT 177
Query: 604 I-TKSDGIRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGM----------LPDPRNTHIVV 750
I K G G Y+G ++ G+ Y F + T K + P N +++V
Sbjct: 178 IYAKEGGFLGFYRGLMPTILGMAPYAGVSFFTFGTLKSVGLSYAPALLGRPSSDNPNVLV 237
Query: 751 -----SWMIAQTVTAVAGVVSYPFDTVRRRMMM 834
+ + A+A +SYPFD RRRM +
Sbjct: 238 LKTHINLLCGGVAGAIAQTISYPFDVTRRRMQL 270
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,681,339
Number of extensions: 767207
Number of successful extensions: 3644
Number of sequences better than 1.0e-05: 48
Number of HSP's gapped: 3445
Number of HSP's successfully gapped: 70
Length of query: 388
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 285
Effective length of database: 12,523,851
Effective search space: 3569297535
Effective search space used: 3569297535
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001801
(1166 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999583.1| ADP/ATP translocase 3 [Sus scrofa]. 567 e-162
Alignment gi|XP_001927475.1| PREDICTED: ADP/ATP translocase 2 [Sus scrofa]. 531 e-151
Alignment gi|XP_003133393.1| PREDICTED: ADP/ATP translocase 1-like isofor... 524 e-149
Alignment gi|XP_003129255.2| PREDICTED: ADP/ATP translocase 4-like [Sus s... 216 3e-56
Alignment gi|NP_001186292.1| calcium-binding mitochondrial carrier protei... 120 1e-27
Alignment gi|XP_003360489.1| PREDICTED: brain mitochondrial carrier prote... 100 2e-21
Alignment gi|XP_003135426.2| PREDICTED: brain mitochondrial carrier prote... 100 2e-21
Alignment gi|NP_001157982.1| calcium-binding mitochondrial carrier protei... 100 2e-21
Alignment gi|XP_001927950.1| PREDICTED: graves disease carrier protein-li... 98 1e-20
Alignment gi|XP_001927624.1| PREDICTED: solute carrier family 25 member 4... 96 4e-20
>ref|NP_999583.1| ADP/ATP translocase 3 [Sus scrofa].
Length = 298
Score = 567 bits (1461), Expect = e-162
Identities = 284/298 (95%), Positives = 284/298 (95%)
Frame = +1
Query: 115 MTEQAISFAKDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVR 294
MTEQAISFAKDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVR
Sbjct: 1 MTEQAISFAKDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVR 60
Query: 295 IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFXXXXXXX 474
IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYF
Sbjct: 61 IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFAGNLASG 120
Query: 475 XXXXXTSLCFVYPLDFARTRLAADVGKSATEREFKGLGDCLVKITKSDGIRGLYQGFNVS 654
TSLCFVYPLDFARTRLAADVGKSATEREFKGLGDCLVKITKSDGIRGLYQGFNVS
Sbjct: 121 GAAGATSLCFVYPLDFARTRLAADVGKSATEREFKGLGDCLVKITKSDGIRGLYQGFNVS 180
Query: 655 VQGIIIYRAAYFGVYDTAKGMLPDPRNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMM 834
VQGIIIYRAAYFGVY TAKGMLPDPRNTHIVVSWMIAQTVTAVAGV SYPFDTVRRRMMM
Sbjct: 181 VQGIIIYRAAYFGVYGTAKGMLPDPRNTHIVVSWMIAQTVTAVAGVFSYPFDTVRRRMMM 240
Query: 835 QSGRKGADIMYKGTLDCWRKIFKDEGGKAFFKGAWSNVLRGMGGAFVLVLYDELKKVI 1008
QSGRKGADIMYKGTLDCWRKIFKDEGGKAFFKGAWSNVLRGMGGAFVLVLYDELKKVI
Sbjct: 241 QSGRKGADIMYKGTLDCWRKIFKDEGGKAFFKGAWSNVLRGMGGAFVLVLYDELKKVI 298
>ref|XP_001927475.1| PREDICTED: ADP/ATP translocase 2 [Sus scrofa].
Length = 298
Score = 531 bits (1368), Expect = e-151
Identities = 258/296 (87%), Positives = 272/296 (91%)
Frame = +1
Query: 115 MTEQAISFAKDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVR 294
MT+ A+SFAKDFLAGG+AAAISKTAVAPIERVKLLLQVQHASKQI ADKQYKGI+DC+VR
Sbjct: 1 MTDAAVSFAKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQITADKQYKGIIDCVVR 60
Query: 295 IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFXXXXXXX 474
IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDK TQFWRYF
Sbjct: 61 IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKRTQFWRYFAGNLASG 120
Query: 475 XXXXXTSLCFVYPLDFARTRLAADVGKSATEREFKGLGDCLVKITKSDGIRGLYQGFNVS 654
TSLCFVYPLDFARTRLAADVGK+ EREF+GLGDCLVKI KSDGIRGLYQGFNVS
Sbjct: 121 GAAGATSLCFVYPLDFARTRLAADVGKAGAEREFRGLGDCLVKIYKSDGIRGLYQGFNVS 180
Query: 655 VQGIIIYRAAYFGVYDTAKGMLPDPRNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMM 834
VQGIIIYRAAYFG+YDTAKGMLPDP+NTHI +SWMIAQ+VTAVAG+ SYPFDTVRRRMMM
Sbjct: 181 VQGIIIYRAAYFGIYDTAKGMLPDPKNTHIFISWMIAQSVTAVAGLTSYPFDTVRRRMMM 240
Query: 835 QSGRKGADIMYKGTLDCWRKIFKDEGGKAFFKGAWSNVLRGMGGAFVLVLYDELKK 1002
QSGRKG DIMY GTLDCWRKI +DEG KAFFKGAWSNVLRGMGGAFVLVLYDE+KK
Sbjct: 241 QSGRKGTDIMYTGTLDCWRKIARDEGAKAFFKGAWSNVLRGMGGAFVLVLYDEIKK 296
>ref|XP_003133393.1| PREDICTED: ADP/ATP translocase 1-like isoform 2 [Sus scrofa].
Length = 298
Score = 524 bits (1349), Expect = e-149
Identities = 255/298 (85%), Positives = 272/298 (91%)
Frame = +1
Query: 115 MTEQAISFAKDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVR 294
M++QA SF KDFLAGG+AAAISKTAVAPIERVKLLLQVQHASKQI+A+KQYKGI+DC+VR
Sbjct: 1 MSDQAWSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVR 60
Query: 295 IPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFXXXXXXX 474
IPKEQG LSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVD+H QFWRYF
Sbjct: 61 IPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASG 120
Query: 475 XXXXXTSLCFVYPLDFARTRLAADVGKSATEREFKGLGDCLVKITKSDGIRGLYQGFNVS 654
TSLCFVYPLDFARTRLAADVGK A +REF GLG+CL KI KSDG+RGLYQGFNVS
Sbjct: 121 GAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCLAKIFKSDGLRGLYQGFNVS 180
Query: 655 VQGIIIYRAAYFGVYDTAKGMLPDPRNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMM 834
VQGIIIYRAAYFGVYDTAKGMLPDP+N HI+VSWMIAQTVTAVAG+VSYPFDTVRRRMMM
Sbjct: 181 VQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMM 240
Query: 835 QSGRKGADIMYKGTLDCWRKIFKDEGGKAFFKGAWSNVLRGMGGAFVLVLYDELKKVI 1008
QSGRKGADIMY GT+DCWRKI KDEG KAFFKGAWSNVLRGMGGAFVLVLYDE+KK +
Sbjct: 241 QSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLVLYDEIKKYV 298
>ref|XP_003129255.2| PREDICTED: ADP/ATP translocase 4-like [Sus scrofa].
Length = 173
Score = 216 bits (549), Expect = 3e-56
Identities = 104/141 (73%), Positives = 117/141 (82%)
Frame = +1
Query: 133 SFAKDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVRIPKEQG 312
SF KD LAGG+AAA+SKTAVAPIERVKLLLQVQ +SKQI+ + QYKGIVDC+VRIP+EQG
Sbjct: 23 SFGKDLLAGGVAAAVSKTAVAPIERVKLLLQVQASSKQISPEAQYKGIVDCLVRIPREQG 82
Query: 313 VLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFXXXXXXXXXXXXT 492
S+WRGNLANVIRYFPTQALNFAFKDKYKQ+F+ GV+K QFWR+F T
Sbjct: 83 FFSYWRGNLANVIRYFPTQALNFAFKDKYKQLFMSGVNKEKQFWRWFLANLAAGGAAGAT 142
Query: 493 SLCFVYPLDFARTRLAADVGK 555
SLC VYPLDFARTRL AD+GK
Sbjct: 143 SLCVVYPLDFARTRLGADIGK 163
>ref|NP_001186292.1| calcium-binding mitochondrial carrier protein SCaMC-1-like [Sus
scrofa].
Length = 477
Score = 120 bits (302), Expect = 1e-27
Identities = 86/295 (29%), Positives = 145/295 (49%), Gaps = 6/295 (2%)
Frame = +1
Query: 142 KDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVRIPKEQGVLS 321
+ LAGG+A A+S+T+ AP++R+K+++QV H SK + I ++ KE G+ S
Sbjct: 196 RQLLAGGVAGAVSRTSTAPLDRLKVMMQV-HGSK-----SEKMNIYGGFRQMVKEGGIRS 249
Query: 322 FWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFXXXXXXXXXXXXTSLC 501
WRGN NVI+ P A+ F ++YK++ K F R+ T+
Sbjct: 250 LWRGNGTNVIKIAPETAVKFWAYEQYKKLLTEEGQKVGTFERFI-----SGSMAGATAQT 304
Query: 502 FVYPLDFARTRLAADVGKSATEREFKGLGDCLVKITKSDGIRGLYQGFNVSVQGIIIYRA 681
F+YP++ +TRLA VGK+ ++ G+ DC KI K +G+ Y+G+ ++ GII Y
Sbjct: 305 FIYPMEVLKTRLA--VGKTG---QYSGIFDCAKKILKHEGMGAFYKGYVPNLLGIIPYAG 359
Query: 682 AYFGVYDTAK-----GMLPDPRNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMMQSGR 846
VY+ K D N ++V + + SYP VR RM Q+
Sbjct: 360 IDLAVYELLKSHWLDNFAKDSVNPGVMVLLGCGALSSTCGQLASYPLALVRTRMQAQAMV 419
Query: 847 KGADIMYKGTLDCWRKIFKDEGGKAFFKGAWSNVLRGMGGAFV-LVLYDELKKVI 1008
+GA + + +R+I EG ++G N ++ + + V+Y+ +K+ +
Sbjct: 420 EGAPQL--NMVGLFRRIISKEGIPGLYRGITPNFMKVLPAVGISYVVYENMKQTL 472
>ref|XP_003360489.1| PREDICTED: brain mitochondrial carrier protein 1-like isoform 2 [Sus
scrofa].
Length = 325
Score = 100 bits (249), Expect = 2e-21
Identities = 84/297 (28%), Positives = 131/297 (44%), Gaps = 9/297 (3%)
Frame = +1
Query: 142 KDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADK-QYKGIVDCIVRIPKEQGVL 318
K F+ GG+A+ +++ P++ K LQVQ S + + +Y+G+ + RI KE+GVL
Sbjct: 42 KPFVYGGLASIVAEFGTFPVDLTKTRLQVQGQSIDVRFKEIKYRGMFHALFRIYKEEGVL 101
Query: 319 SFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFXXXXXXXXXXXXTSL 498
+ + G ++R + K++F+ ++ T S
Sbjct: 102 ALYSGIAPALLRQASYGTIKIGIYQSLKRLFVERLEDET-----LLINMICGVVSGVISS 156
Query: 499 CFVYPLDFARTRLAADVGKSATEREFKG-LGDCLVKITKSDGIRGLYQGFNVSVQGIIIY 675
P D + R+ A F+G + + I + +G RGL++G + Q I
Sbjct: 157 TIANPTDVLKIRMQAQGSL------FQGSMIGSFIDIYQQEGTRGLWRGVVPTAQRAAIV 210
Query: 676 RAAYFGVYDTAK------GMLPDPRNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMMQ 837
VYD K G+L D TH V S+ T + S P D VR RMM Q
Sbjct: 211 VGVELPVYDITKKHLILSGVLGDTILTHFVSSF----TCGLAGALASNPVDVVRTRMMNQ 266
Query: 838 SGRKGADIMYKGTLDCWRKIFKDEGGKAFFKGAWSNVLR-GMGGAFVLVLYDELKKV 1005
G +YKGTLD K++K EG A +KG W N LR G + Y++LK++
Sbjct: 267 RAIVGHVDLYKGTLDGILKMWKHEGFFALYKGFWPNWLRLGPWNIIFFITYEQLKRL 323
>ref|XP_003135426.2| PREDICTED: brain mitochondrial carrier protein 1-like isoform 1 [Sus
scrofa].
Length = 325
Score = 100 bits (249), Expect = 2e-21
Identities = 84/297 (28%), Positives = 131/297 (44%), Gaps = 9/297 (3%)
Frame = +1
Query: 142 KDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADK-QYKGIVDCIVRIPKEQGVL 318
K F+ GG+A+ +++ P++ K LQVQ S + + +Y+G+ + RI KE+GVL
Sbjct: 42 KPFVYGGLASIVAEFGTFPVDLTKTRLQVQGQSIDVRFKEIKYRGMFHALFRIYKEEGVL 101
Query: 319 SFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFXXXXXXXXXXXXTSL 498
+ + G ++R + K++F+ ++ T S
Sbjct: 102 ALYSGIAPALLRQASYGTIKIGIYQSLKRLFVERLEDET-----LLINMICGVVSGVISS 156
Query: 499 CFVYPLDFARTRLAADVGKSATEREFKG-LGDCLVKITKSDGIRGLYQGFNVSVQGIIIY 675
P D + R+ A F+G + + I + +G RGL++G + Q I
Sbjct: 157 TIANPTDVLKIRMQAQGSL------FQGSMIGSFIDIYQQEGTRGLWRGVVPTAQRAAIV 210
Query: 676 RAAYFGVYDTAK------GMLPDPRNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMMQ 837
VYD K G+L D TH V S+ T + S P D VR RMM Q
Sbjct: 211 VGVELPVYDITKKHLILSGVLGDTILTHFVSSF----TCGLAGALASNPVDVVRTRMMNQ 266
Query: 838 SGRKGADIMYKGTLDCWRKIFKDEGGKAFFKGAWSNVLR-GMGGAFVLVLYDELKKV 1005
G +YKGTLD K++K EG A +KG W N LR G + Y++LK++
Sbjct: 267 RAIVGHVDLYKGTLDGILKMWKHEGFFALYKGFWPNWLRLGPWNIIFFITYEQLKRL 323
>ref|NP_001157982.1| calcium-binding mitochondrial carrier protein SCaMC-2 [Sus scrofa].
Length = 501
Score = 100 bits (248), Expect = 2e-21
Identities = 82/296 (27%), Positives = 140/296 (47%), Gaps = 10/296 (3%)
Frame = +1
Query: 142 KDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVRIPKEQGVLS 321
+ +AGG A A+S+T AP++R+K+L+QV HAS+ IV ++ +E G S
Sbjct: 220 RHLVAGGGAGAVSRTCTAPLDRLKVLMQV-HASRS-----NNMCIVGGFTQMIREGGARS 273
Query: 322 FWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFXXXXXXXXXXXXTSLC 501
WRGN NV++ P A+ F ++ K++ G D+ T +S
Sbjct: 274 LWRGNGINVLKIAPESAIKFMAYEQIKRLV--GTDQETLRIHERLVAGSLAGAIAQSS-- 329
Query: 502 FVYPLDFARTRLAADVGKSATEREFKGLGDCLVKITKSDGIRGLYQGFNVSVQGIIIYRA 681
+YP++ +TR+A ++ G+ DC KI +G+ Y+G+ ++ GII Y
Sbjct: 330 -IYPMEVLKTRMAL-----RKTGQYSGMLDCARKILAREGVAAFYKGYVPNMLGIIPYAG 383
Query: 682 AYFGVYDTAKGM--------LPDPRNTHIVVSWMIAQTVTAVAG-VVSYPFDTVRRRMMM 834
VY+T K DP V + T+++ G + SYP VR RM
Sbjct: 384 IDLAVYETLKNAWLQRYAVNSADPG----VFVLLACGTMSSTCGQLASYPLALVRTRMQA 439
Query: 835 QSGRKGADIMYKGTLDCWRKIFKDEGGKAFFKGAWSNVLRGMGGAFV-LVLYDELK 999
Q+ +GA + +L +++I + EG ++G N ++ + + V+Y+ LK
Sbjct: 440 QASVEGAPEVSMSSL--FKQILRTEGAFGLYRGLAPNFMKVIPAVSISYVVYENLK 493
>ref|XP_001927950.1| PREDICTED: graves disease carrier protein-like [Sus scrofa].
Length = 329
Score = 97.8 bits (242), Expect = 1e-20
Identities = 76/251 (30%), Positives = 112/251 (44%), Gaps = 20/251 (7%)
Frame = +1
Query: 142 KDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYK--GIVDCIVRIPKEQGV 315
+ FLAGGIA +KT VAP++RVK+LLQ A + YK G+ + +P+++G
Sbjct: 35 RSFLAGGIAGCCAKTTVAPLDRVKVLLQ--------AHNHHYKHLGVFSTLRAVPQKEGY 86
Query: 316 LSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLG--GVDKHTQFWRYFXXXXXXXXXXXX 489
L ++GN A +IR FP A+ F + YK + GV H
Sbjct: 87 LGLYKGNGAMMIRIFPYGAIQFMAFEHYKTLITTKLGVSGHVH-------RLMAGSLAGM 139
Query: 490 TSLCFVYPLDFARTRLAADVGKSATEREFKGLGDCLVKI-TKSDGIRGLYQGFNVSVQGI 666
T++ YPLD R RLA V E + G+ I K G G Y+G ++ G+
Sbjct: 140 TAVICTYPLDMVRVRLAFQV---KGEHTYTGIIHAFKTIYAKEGGFLGFYRGLMPTILGM 196
Query: 667 IIYRAAYFGVYDTAKGM----------LPDPRNTHIVV-----SWMIAQTVTAVAGVVSY 801
Y F + T K + P N +++V + + A+A +SY
Sbjct: 197 APYAGVSFFTFGTLKSVGLSHAPTLLGRPSSDNPNVLVLKTHINLICGGVAGAIAQTISY 256
Query: 802 PFDTVRRRMMM 834
PFD RRRM +
Sbjct: 257 PFDVTRRRMQL 267
>ref|XP_001927624.1| PREDICTED: solute carrier family 25 member 43 [Sus scrofa].
Length = 341
Score = 95.9 bits (237), Expect = 4e-20
Identities = 70/273 (25%), Positives = 125/273 (45%), Gaps = 5/273 (1%)
Frame = +1
Query: 151 LAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVRIPKEQGVLSFWR 330
L G+A A+S + AP+E +L QV + +G +R+ + +G + W+
Sbjct: 17 LCAGLAGALSLSLTAPLELATVLAQVG------VVRGRARGPWAAGLRVWRAEGPRALWK 70
Query: 331 GNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFXXXXXXXXXXXXTSLCFVY 510
GN +R FP A+ A K+ +F + H WR S Y
Sbjct: 71 GNAVACLRLFPCSAVQLAAYRKFVVLFTDDLG-HISQWR----SVMAGSLAGMVSTVVTY 125
Query: 511 PLDFARTRLAADVGKSATEREFKGLGDCLVKITKSDGIRGLYQGFNVSVQGIIIYRAAYF 690
P D +TRL + ++ E ++G+ I + +G+ Y+G +++V G + +
Sbjct: 126 PTDLIKTRL---IVQNMLEPSYRGIFHAFSTIYQQEGLLAFYRGVSLTVLGALPFSVGSL 182
Query: 691 GVYDTAKGMLPDPRNTH-IVVSWMIAQTVTAVAGVVSYPFDTVRRRMMMQSGRK----GA 855
VY + + PR+ ++ ++ AV +S+PFDTV+R+M QS G
Sbjct: 183 LVYMNLEKIWNGPRDRFSLLQNFANICLAAAVTQTLSFPFDTVKRKMQAQSPYLPHGGGV 242
Query: 856 DIMYKGTLDCWRKIFKDEGGKAFFKGAWSNVLR 954
D+ + G +DC+R+I K +G + G +N+L+
Sbjct: 243 DVHFSGAVDCFRQIVKAQGVLGLWNGLAANLLK 275
Score = 55.8 bits (133), Expect = 4e-08
Identities = 43/198 (21%), Positives = 81/198 (40%), Gaps = 4/198 (2%)
Frame = +1
Query: 130 ISFAKDFLAGGIAAAISKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCIVRIPKEQ 309
IS + +AG +A +S P + +K L VQ+ + Y+GI I +++
Sbjct: 104 ISQWRSVMAGSLAGMVSTVVTYPTDLIKTRLIVQNM-----LEPSYRGIFHAFSTIYQQE 158
Query: 310 GVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFXXXXXXXXXXXX 489
G+L+F+RG V+ P + ++I+ G D+ + +
Sbjct: 159 GLLAFYRGVSLTVLGALPFSVGSLLVYMNLEKIWNGPRDRFSLLQNF-----ANICLAAA 213
Query: 490 TSLCFVYPLDFARTRLAADVGK----SATEREFKGLGDCLVKITKSDGIRGLYQGFNVSV 657
+ +P D + ++ A + F G DC +I K+ G+ GL+ G ++
Sbjct: 214 VTQTLSFPFDTVKRKMQAQSPYLPHGGGVDVHFSGAVDCFRQIVKAQGVLGLWNGLAANL 273
Query: 658 QGIIIYRAAYFGVYDTAK 711
I+ Y FG ++ K
Sbjct: 274 LKIVPYFGVMFGTFEFCK 291
Score = 49.3 bits (116), Expect = 4e-06
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Frame = +1
Query: 133 SFAKDFLAGGIAAAISKTAVAPIERVKLLLQVQ--HASKQIAADKQYKGIVDCIVRIPKE 306
S ++F +AAA+++T P + VK +Q Q + D + G VDC +I K
Sbjct: 200 SLLQNFANICLAAAVTQTLSFPFDTVKRKMQAQSPYLPHGGGVDVHFSGAVDCFRQIVKA 259
Query: 307 QGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFL 414
QGVL W G AN+++ P + F + K+I L
Sbjct: 260 QGVLGLWNGLAANLLKIVPYFGVMFGTFEFCKRICL 295
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,255,183
Number of extensions: 630560
Number of successful extensions: 3111
Number of sequences better than 1.0e-05: 42
Number of HSP's gapped: 2953
Number of HSP's successfully gapped: 59
Length of query: 388
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 287
Effective length of database: 8,829,335
Effective search space: 2534019145
Effective search space used: 2534019145
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001801
(1166 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896347.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 973 0.0
Sscrofa_Chr15 238 6e-60
Sscrofa_ChrX 210 1e-51
>gb|GL896347.1| Sus scrofa unplaced genomic scaffold chrU_scaffold697
Length = 12539
Score = 973 bits (491), Expect = 0.0
Identities = 491/491 (100%)
Strand = Plus / Plus
Query: 223 caggtgcagcacgccagcaagcagatcgcggccgacaagcagtacaagggcatcgtggac 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4277 caggtgcagcacgccagcaagcagatcgcggccgacaagcagtacaagggcatcgtggac 4336
Query: 283 tgcatcgtgcgcatccccaaggagcagggcgtgctgtccttctggaggggcaacctggcc 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4337 tgcatcgtgcgcatccccaaggagcagggcgtgctgtccttctggaggggcaacctggcc 4396
Query: 343 aatgtcatccgctacttccccacgcaagccctcaacttcgccttcaaggataagtacaag 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4397 aatgtcatccgctacttccccacgcaagccctcaacttcgccttcaaggataagtacaag 4456
Query: 403 cagattttcctgggcggcgtggacaagcacacgcagttctggaggtatttcgccggcaac 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4457 cagattttcctgggcggcgtggacaagcacacgcagttctggaggtatttcgccggcaac 4516
Query: 463 ctggcctccggcggcgcggccggcgccacctccctctgcttcgtctaccccctggatttc 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4517 ctggcctccggcggcgcggccggcgccacctccctctgcttcgtctaccccctggatttc 4576
Query: 523 gcccgaacccgcctggctgccgacgtggggaaatccgccaccgagcgggagttcaaaggc 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4577 gcccgaacccgcctggctgccgacgtggggaaatccgccaccgagcgggagttcaaaggc 4636
Query: 583 ctgggcgactgtctggtgaagatcaccaagtctgacggcatccgggggctgtaccagggc 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4637 ctgggcgactgtctggtgaagatcaccaagtctgacggcatccgggggctgtaccagggc 4696
Query: 643 ttcaacgtgtcggtgcagggaatcatcatctaccgggcggcctacttcggcgtgtacgac 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4697 ttcaacgtgtcggtgcagggaatcatcatctaccgggcggcctacttcggcgtgtacgac 4756
Query: 703 acggccaaggg 713
|||||||||||
Sbjct: 4757 acggccaaggg 4767
Score = 202 bits (102), Expect = 3e-49
Identities = 126/134 (94%)
Strand = Plus / Plus
Query: 1033 acgcggaccaagggacccagggacctacgtagaatcattctccactgtcacggaccattg 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5133 acgcggaccaagggacccagggacctacgtagaatcattctccactgtcacggaccattg 5192
Query: 1093 accttcaaaaattccagtgtccctgcggagggcccagccctggaaaagggggcggccccc 1152
||||||| ||||||||||||||||||||| ||||||| ||||| | |||| |||||||||
Sbjct: 5193 accttcagaaattccagtgtccctgcggacggcccaggcctggcagagggcgcggccccc 5252
Query: 1153 ttggggcgctaccc 1166
| ||| ||||||||
Sbjct: 5253 tggggccgctaccc 5266
>Sscrofa_Chr15
|| Length = 157681621
Score = 238 bits (120), Expect = 6e-60
Identities = 381/468 (81%)
Strand = Plus / Plus
Query: 222 acaggtgcagcacgccagcaagcagatcgcggccgacaagcagtacaagggcatcgtgga 281
|||||| ||||| |||||||| |||||| || || ||||||||||| || ||| | ||
Sbjct: 52923995 acaggtccagcatgccagcaaacagatcagtgctgagaagcagtacaaagggatcattga 52924054
Query: 282 ctgcatcgtgcgcatccccaaggagcagggcgtgctgtccttctggaggggcaacctggc 341
||| | ||| | |||||||||||||||||| | || |||||||||||||| ||||||||
Sbjct: 52924055 ttgcgtggtgagaatccccaaggagcagggctttctctccttctggaggggtaacctggc 52924114
Query: 342 caatgtcatccgctacttccccacgcaagccctcaacttcgccttcaaggataagtacaa 401
||| || ||||| ||||| ||||| ||||| |||||||||||||||||||| ||||||||
Sbjct: 52924115 caacgtgatccgttactttcccacccaagctctcaacttcgccttcaaggacaagtacaa 52924174
Query: 402 gcagattttcctgggcggcgtggacaagcacacgcagttctggaggtatttcgccggcaa 461
|||||| |||||||| ||||||||| ||| | |||||||||| | || || || || ||
Sbjct: 52924175 gcagatcttcctggggggcgtggaccggcataagcagttctggcgctactttgctggtaa 52924234
Query: 462 cctggcctccggcggcgcggccggcgccacctccctctgcttcgtctaccccctggattt 521
|||||| ||||| || || || || ||||||||||||||||| |||||||| ||||| ||
Sbjct: 52924235 cctggcttccggtggggcagctggggccacctccctctgctttgtctacccgctggactt 52924294
Query: 522 cgcccgaacccgcctggctgccgacgtggggaaatccgccaccgagcgggagttcaaagg 581
|| | ||| | ||||||||||| ||||| || ||| || |||| ||||||| ||
Sbjct: 52924295 tgctaggaccaggctggctgccgatgtgggcaagggtgccgcccagcgtgagttcactgg 52924354
Query: 582 cctgggcgactgtctggtgaagatcaccaagtctgacggcatccgggggctgtaccaggg 641
||||||| ||||||| | |||||| |||||| || ||| | ||||| || ||||||||
Sbjct: 52924355 cctgggcaactgtctcgccaagatcttcaagtccgatggcctgcggggtctctaccaggg 52924414
Query: 642 cttcaacgtgtcggtgcagggaatcatcatctaccgggcggcctactt 689
|||||||| || || ||||| ||||| |||||| | || ||||||||
Sbjct: 52924415 tttcaacgtctctgtccagggcatcattatctacagagccgcctactt 52924462
Score = 73.8 bits (37), Expect = 2e-10
Identities = 76/89 (85%)
Strand = Plus / Plus
Query: 751 agctggatgatcgcgcagaccgtgacggccgtggcgggcgtggtctcctaccccttcgac 810
||||||||||| || |||||||||||||| ||||| || |||| ||||||||||| |||
Sbjct: 52925054 agctggatgattgcccagaccgtgacggcggtggcagggctggtgtcctacccctttgac 52925113
Query: 811 accgtgcggcggcggatgatgatgcagtc 839
|| || || || ||||||||||||||||
Sbjct: 52925114 actgtccgccgtaggatgatgatgcagtc 52925142
>Sscrofa_ChrX
|| Length = 144288218
Score = 210 bits (106), Expect = 1e-51
Identities = 379/470 (80%)
Strand = Plus / Minus
Query: 223 caggtgcagcacgccagcaagcagatcgcggccgacaagcagtacaagggcatcgtggac 282
||||||||||| ||||||||||| ||| | || || ||||| |||||||||||| | |||
Sbjct: 113744957 caggtgcagcatgccagcaagcaaatcactgcagataagcaatacaagggcatcatagac 113744898
Query: 283 tgcatcgtgcgcatccccaaggagcagggcgtgctgtccttctggaggggcaacctggcc 342
||| | || || ||||||||||||||||| || |||||||||||| | || |||||||||
Sbjct: 113744897 tgcgtggttcgtatccccaaggagcagggagtcctgtccttctggcgtggtaacctggcc 113744838
Query: 343 aatgtcatccgctacttccccacgcaagccctcaacttcgccttcaaggataagtacaag 402
||||||||| | |||||||||||||| || |||||||| || ||||| ||||| ||||||
Sbjct: 113744837 aatgtcatcagatacttccccacgcaggctctcaactttgcgttcaaagataaatacaag 113744778
Query: 403 cagattttcctgggcggcgtggacaagcacacgcagttctggaggtatttcgccggcaac 462
||||| ||||||||||| ||||||||| || ||||| ||| | || || || || ||
Sbjct: 113744777 cagatcttcctgggcggtgtggacaagaggacccagttttggcgctactttgcagggaat 113744718
Query: 463 ctggcctccggcggcgcggccggcgccacctccctctgcttcgtctaccccctggatttc 522
|||||||| || || || || || ||||| ||| | || || || ||||| || || ||
Sbjct: 113744717 ctggcctcaggtggtgctgctggggccacatccttgtgttttgtgtaccctctcgacttt 113744658
Query: 523 gcccgaacccgcctggctgccgacgtggggaaatccgccaccgagcgggagttcaaaggc 582
||||| || || || || || || ||||| ||| | | | || |||| |||| ||||
Sbjct: 113744657 gcccgtactcgtctagccgctgatgtgggcaaagctggagctgaaagggaattcagaggc 113744598
Query: 583 ctgggcgactgtctggtgaagatcaccaagtctgacggcatccgggggctgtaccagggc 642
|| |||||||| ||||| |||||| ||| |||||||| || |||| |||||||| |||
Sbjct: 113744597 ctcggcgactgcctggttaagatctacaaatctgacgggattaggggcctgtaccaaggc 113744538
Query: 643 ttcaacgtgtcggtgcagggaatcatcatctaccgggcggcctacttcgg 692
|| |||||||| |||||||| || ||||||||||| || |||||||||||
Sbjct: 113744537 tttaacgtgtctgtgcagggtattatcatctaccgagctgcctacttcgg 113744488
Score = 85.7 bits (43), Expect = 5e-14
Identities = 76/87 (87%)
Strand = Plus / Minus
Query: 133 tccttcgccaaggactttctggccggaggcattgccgccgccatctccaagacggccgtg 192
||||||||||||||||| ||||| || || | ||||| |||||||||||||| |||||
Sbjct: 113746089 tccttcgccaaggacttcctggcaggtggagtagccgcggccatctccaagactgccgta 113746030
Query: 193 gcccccattgagcgggtcaagctgctg 219
|| ||||| ||||||||||||||||||
Sbjct: 113746029 gcgcccatcgagcgggtcaagctgctg 113746003
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 20,816,403
Number of extensions: 97
Number of successful extensions: 97
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 7
Length of query: 1166
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1145
Effective length of database: 2,808,413,156
Effective search space: 3215633063620
Effective search space used: 3215633063620
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)