Animal-Genome cDNA 20110601C-001806


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001806
         (1843 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001069127.1| isopentenyl-diphosphate Delta-isomerase 1 [B...   424   e-118
Alignment   gi|XP_002692234.1| PREDICTED: hypothetical protein [Bos taurus].      57   7e-08
Alignment   gi|XP_002701133.1| PREDICTED: hypothetical protein [Bos taurus].      57   7e-08

>ref|NP_001069127.1| isopentenyl-diphosphate Delta-isomerase 1 [Bos taurus].
          Length = 287

 Score =  424 bits (1089), Expect = e-118
 Identities = 200/243 (82%), Positives = 220/243 (90%)
 Frame = +2

Query: 338  DAGPLRSPGLRARSPTMPEINTDHLDAQQVQLLAEMCILIDENDRRIGAETKKNCHLNEN 517
            D   LR PG R     MPE++TD LD +QVQL+AEMCIL+DENDRRIGAETKKNCHLNEN
Sbjct: 45   DGSCLRFPGRRGGWAAMPEVSTDDLDERQVQLMAEMCILVDENDRRIGAETKKNCHLNEN 104

Query: 518  IKKGLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFSNACCSHPLSTPGELEENDAIGV 697
            I++GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCF+N CCSHPLS P ELEENDAIGV
Sbjct: 105  IERGLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPSELEENDAIGV 164

Query: 698  RRAAQRRLKAELGIPLEEVPPEEINYLTRIYYKAQSDGIWGEHEIDYILLMKKDVTLNPD 877
            RRAAQRRLKAELGIP+EEVPPEEINYLTRI+YKAQSD IWGEHEIDYILL+KK+VTLNPD
Sbjct: 165  RRAAQRRLKAELGIPMEEVPPEEINYLTRIHYKAQSDSIWGEHEIDYILLVKKNVTLNPD 224

Query: 878  PNEIKSHCYVSQEELKELLRKAARGEVKVTPWFQMIADRFLFHWWDNLNHWNQFVDHEKI 1057
            PNEIKS+CYV++EEL+EL+ KAA GE+K+TPWFQ+IAD FLF WWDNLN  N FVDHEKI
Sbjct: 225  PNEIKSYCYVTKEELEELIGKAAHGEIKITPWFQIIADTFLFKWWDNLNRLNLFVDHEKI 284

Query: 1058 HRM 1066
            HRM
Sbjct: 285  HRM 287


>ref|XP_002692234.1| PREDICTED: hypothetical protein [Bos taurus].
          Length = 201

 Score = 56.6 bits (135), Expect = 7e-08
 Identities = 55/156 (35%), Positives = 62/156 (39%), Gaps = 6/156 (3%)
 Frame = -1

Query: 523 LDVLVQVTVLLGLRPDPAVVLVDEDAXXXXXXXXXXXXXXXVYLGHRGRTRAQSWRPQRP 344
           LDVLVQV VLLGL PDP VVLVDEDA                +L HR   R  S  P+ P
Sbjct: 44  LDVLVQVAVLLGLCPDPPVVLVDEDAHLRHELHLPLVQVVRAHLRHR---RPASAPPREP 100

Query: 343 GVAGTPLSSAFLS------QXXXXXXXXXXXXXXXPQHRPSNRPCSRQSXXXXXXXXXXX 182
           G  GT      L       Q               P+ R +N P   Q            
Sbjct: 101 G--GTRAVHCRLHRRGSILQTPPQGTGPASDPSPAPRGRAANCPRRGQGAPHCRRPMVRR 158

Query: 181 XXPDVTVARWRHARHSRCLSPDGGSQIGPQAKAQFL 74
               VTVARW H+R     S   G +  PQA A+ L
Sbjct: 159 PATYVTVARWCHSRSPGVSSHGSGVRNLPQAAARVL 194


>ref|XP_002701133.1| PREDICTED: hypothetical protein [Bos taurus].
          Length = 201

 Score = 56.6 bits (135), Expect = 7e-08
 Identities = 55/156 (35%), Positives = 62/156 (39%), Gaps = 6/156 (3%)
 Frame = -1

Query: 523 LDVLVQVTVLLGLRPDPAVVLVDEDAXXXXXXXXXXXXXXXVYLGHRGRTRAQSWRPQRP 344
           LDVLVQV VLLGL PDP VVLVDEDA                +L HR   R  S  P+ P
Sbjct: 44  LDVLVQVAVLLGLCPDPPVVLVDEDAHLRHELHLPLVQVVRAHLRHR---RPASAPPREP 100

Query: 343 GVAGTPLSSAFLS------QXXXXXXXXXXXXXXXPQHRPSNRPCSRQSXXXXXXXXXXX 182
           G  GT      L       Q               P+ R +N P   Q            
Sbjct: 101 G--GTRAVHCRLHRRGSILQTPPQGTGPASDPSPAPRGRAANCPRRGQGAPHCRRPMVRR 158

Query: 181 XXPDVTVARWRHARHSRCLSPDGGSQIGPQAKAQFL 74
               VTVARW H+R     S   G +  PQA A+ L
Sbjct: 159 PATYVTVARWCHSRSPGVSSHGSGVRNLPQAAARVL 194


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 57,353,527
Number of extensions: 1396640
Number of successful extensions: 4672
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4660
Number of HSP's successfully gapped: 3
Length of query: 614
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 506
Effective length of database: 14,107,870
Effective search space: 7138582220
Effective search space used: 7138582220
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001806
         (1843 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done

 ***** No hits found ******


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 59,420,014
Number of extensions: 1351975
Number of successful extensions: 4820
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 4809
Number of HSP's successfully gapped: 0
Length of query: 614
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 505
Effective length of database: 15,240,880
Effective search space: 7696644400
Effective search space used: 7696644400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001806
         (1843 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_004499.2| isopentenyl-diphosphate Delta-isomerase 1 [Homo...   423   e-118
Alignment   gi|NP_150286.1| isopentenyl-diphosphate Delta-isomerase 2 [Homo...   310   2e-84

>ref|NP_004499.2| isopentenyl-diphosphate Delta-isomerase 1 [Homo sapiens].
          Length = 284

 Score =  423 bits (1088), Expect = e-118
 Identities = 199/227 (87%), Positives = 217/227 (95%)
 Frame = +2

Query: 386  MPEINTDHLDAQQVQLLAEMCILIDENDRRIGAETKKNCHLNENIKKGLLHRAFSVFLFN 565
            MPEINT+HLD QQVQLLAEMCILIDEND +IGAETKKNCHLNENI+KGLLHRAFSVFLFN
Sbjct: 58   MPEINTNHLDKQQVQLLAEMCILIDENDNKIGAETKKNCHLNENIEKGLLHRAFSVFLFN 117

Query: 566  TENKLLLQQRSDAKITFPGCFSNACCSHPLSTPGELEENDAIGVRRAAQRRLKAELGIPL 745
            TENKLLLQQRSDAKITFPGCF+N CCSHPLS P ELEE+DA+GVRRAAQRRLKAELGIPL
Sbjct: 118  TENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPL 177

Query: 746  EEVPPEEINYLTRIYYKAQSDGIWGEHEIDYILLMKKDVTLNPDPNEIKSHCYVSQEELK 925
            EEVPPEEINYLTRI+YKAQSDGIWGEHEIDYILL++K+VTLNPDPNEIKS+CYVS+EELK
Sbjct: 178  EEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRKNVTLNPDPNEIKSYCYVSKEELK 237

Query: 926  ELLRKAARGEVKVTPWFQMIADRFLFHWWDNLNHWNQFVDHEKIHRM 1066
            ELL+KAA GE+K+TPWF++IA  FLF WWDNLNH NQFVDHEKI+RM
Sbjct: 238  ELLKKAASGEIKITPWFKIIAATFLFKWWDNLNHLNQFVDHEKIYRM 284


>ref|NP_150286.1| isopentenyl-diphosphate Delta-isomerase 2 [Homo sapiens].
          Length = 227

 Score =  310 bits (795), Expect = 2e-84
 Identities = 147/227 (64%), Positives = 188/227 (82%)
 Frame = +2

Query: 386  MPEINTDHLDAQQVQLLAEMCILIDENDRRIGAETKKNCHLNENIKKGLLHRAFSVFLFN 565
            M +IN D +D +Q+Q L EM I++DEND+ IGA+TK+NCHLNENI+KGLLHRAFSV LFN
Sbjct: 1    MSDINLDWVDRRQLQRLEEMLIVVDENDKVIGADTKRNCHLNENIEKGLLHRAFSVVLFN 60

Query: 566  TENKLLLQQRSDAKITFPGCFSNACCSHPLSTPGELEENDAIGVRRAAQRRLKAELGIPL 745
            T+N++L+QQRSD K+TFPG F+++C SHPL  P ELEE DAIGVRRAAQRRL+AELGIP 
Sbjct: 61   TKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPG 120

Query: 746  EEVPPEEINYLTRIYYKAQSDGIWGEHEIDYILLMKKDVTLNPDPNEIKSHCYVSQEELK 925
            E++ PE+I ++T  ++KA+SD IWGEHEI Y+LL++K+VTLNPDP+E KS  Y+SQEEL 
Sbjct: 121  EQISPEDIVFMTIYHHKAKSDRIWGEHEICYLLLVRKNVTLNPDPSETKSILYLSQEELW 180

Query: 926  ELLRKAARGEVKVTPWFQMIADRFLFHWWDNLNHWNQFVDHEKIHRM 1066
            ELL + ARGEVKVTPW + IA+RFL+ WW +L+    FV+  KIHR+
Sbjct: 181  ELLEREARGEVKVTPWLRTIAERFLYRWWPHLDDVTPFVELHKIHRV 227


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 58,411,969
Number of extensions: 1334205
Number of successful extensions: 4481
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4469
Number of HSP's successfully gapped: 2
Length of query: 614
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 505
Effective length of database: 14,704,088
Effective search space: 7425564440
Effective search space used: 7425564440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001806
         (1843 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_663335.2| isopentenyl-diphosphate Delta-isomerase 1 [Mus ...   410   e-114
Alignment   gi|NP_796171.1| isopentenyl-diphosphate delta isomerase 2 [Mus ...   278   1e-74
Alignment   gi|XP_001473335.1| PREDICTED: isopentenyl-diphosphate Delta-iso...   278   1e-74

>ref|NP_663335.2| isopentenyl-diphosphate Delta-isomerase 1 [Mus musculus].
          Length = 283

 Score =  410 bits (1054), Expect = e-114
 Identities = 194/251 (77%), Positives = 222/251 (88%)
 Frame = +2

Query: 314  SAAERSPCDAGPLRSPGLRARSPTMPEINTDHLDAQQVQLLAEMCILIDENDRRIGAETK 493
            S   R+ C  G +R       S TMPEINT HLD +QVQLLAEMCILIDEND +IGA+TK
Sbjct: 39   STCSRNLCVLGQIR------HSVTMPEINTSHLDEKQVQLLAEMCILIDENDNKIGADTK 92

Query: 494  KNCHLNENIKKGLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFSNACCSHPLSTPGEL 673
            KNCHLNENI KGLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCF+N+CCSHPLS PGEL
Sbjct: 93   KNCHLNENIDKGLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNSCCSHPLSNPGEL 152

Query: 674  EENDAIGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIYYKAQSDGIWGEHEIDYILLMK 853
            EEN+AIGV+RAA+RRLKAELGIPLEEV   E++YLTRIYYKAQSDGIWGEHE+DYIL ++
Sbjct: 153  EENNAIGVKRAAKRRLKAELGIPLEEVDLNEMDYLTRIYYKAQSDGIWGEHEVDYILFLR 212

Query: 854  KDVTLNPDPNEIKSHCYVSQEELKELLRKAARGEVKVTPWFQMIADRFLFHWWDNLNHWN 1033
            K+VTLNPDPNEIKS+CYVS+EE++E+L+KAA GE+K+TPWF++IAD FLF WWDNLNH +
Sbjct: 213  KNVTLNPDPNEIKSYCYVSKEEVREILKKAASGEIKLTPWFKIIADTFLFKWWDNLNHLS 272

Query: 1034 QFVDHEKIHRM 1066
             FVDHEKIHR+
Sbjct: 273  PFVDHEKIHRL 283


>ref|NP_796171.1| isopentenyl-diphosphate delta isomerase 2 [Mus musculus].
          Length = 227

 Score =  278 bits (710), Expect = 1e-74
 Identities = 130/225 (57%), Positives = 176/225 (78%)
 Frame = +2

Query: 386  MPEINTDHLDAQQVQLLAEMCILIDENDRRIGAETKKNCHLNENIKKGLLHRAFSVFLFN 565
            M + +  HLD  Q++ L EMCI+ID+ D+ IGA+TKKNCHL ENI KGLLHRAFSV LFN
Sbjct: 1    MFQASKTHLDELQLKRLEEMCIVIDKQDQIIGADTKKNCHLMENINKGLLHRAFSVVLFN 60

Query: 566  TENKLLLQQRSDAKITFPGCFSNACCSHPLSTPGELEENDAIGVRRAAQRRLKAELGIPL 745
             +N+LL+QQR+DAK TFPG F+++C SHPL  P ELEE DA+GVRRAA RRL+AELGI  
Sbjct: 61   MKNELLVQQRADAKYTFPGHFTDSCSSHPLYVPEELEEKDALGVRRAALRRLQAELGISQ 120

Query: 746  EEVPPEEINYLTRIYYKAQSDGIWGEHEIDYILLMKKDVTLNPDPNEIKSHCYVSQEELK 925
            +++  ++I ++TR Y+K QSD IWGEHEI Y+LL++KD+ LNPD  E++  CY+SQ++++
Sbjct: 121  DQISIKDIIFMTRKYHKCQSDAIWGEHEIGYLLLVRKDLMLNPDTREVRRCCYMSQKDVQ 180

Query: 926  ELLRKAARGEVKVTPWFQMIADRFLFHWWDNLNHWNQFVDHEKIH 1060
            ELL + ARGE K+TPWF+ + + FLF WW +L   + FV+ +KI+
Sbjct: 181  ELLDREARGEEKITPWFRSMVEDFLFSWWPHLEDVSSFVEPDKIY 225


>ref|XP_001473335.1| PREDICTED: isopentenyl-diphosphate Delta-isomerase 2-like [Mus
            musculus].
          Length = 227

 Score =  278 bits (710), Expect = 1e-74
 Identities = 130/225 (57%), Positives = 176/225 (78%)
 Frame = +2

Query: 386  MPEINTDHLDAQQVQLLAEMCILIDENDRRIGAETKKNCHLNENIKKGLLHRAFSVFLFN 565
            M + +  HLD  Q++ L EMCI+ID+ D+ IGA+TKKNCHL ENI KGLLHRAFSV LFN
Sbjct: 1    MFQASKTHLDELQLKRLEEMCIVIDKQDQIIGADTKKNCHLMENINKGLLHRAFSVVLFN 60

Query: 566  TENKLLLQQRSDAKITFPGCFSNACCSHPLSTPGELEENDAIGVRRAAQRRLKAELGIPL 745
             +N+LL+QQR+DAK TFPG F+++C SHPL  P ELEE DA+GVRRAA RRL+AELGI  
Sbjct: 61   MKNELLVQQRADAKYTFPGHFTDSCSSHPLYVPEELEEKDALGVRRAALRRLQAELGISQ 120

Query: 746  EEVPPEEINYLTRIYYKAQSDGIWGEHEIDYILLMKKDVTLNPDPNEIKSHCYVSQEELK 925
            +++  ++I ++TR Y+K QSD IWGEHEI Y+LL++KD+ LNPD  E++  CY+SQ++++
Sbjct: 121  DQISIKDIIFMTRKYHKCQSDAIWGEHEIGYLLLVRKDLMLNPDTREVRRCCYMSQKDVQ 180

Query: 926  ELLRKAARGEVKVTPWFQMIADRFLFHWWDNLNHWNQFVDHEKIH 1060
            ELL + ARGE K+TPWF+ + + FLF WW +L   + FV+ +KI+
Sbjct: 181  ELLDREARGEEKITPWFRSMVEDFLFSWWPHLEDVSSFVEPDKIY 225


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 49,743,672
Number of extensions: 1130753
Number of successful extensions: 3830
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3824
Number of HSP's successfully gapped: 3
Length of query: 614
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 507
Effective length of database: 12,403,707
Effective search space: 6288679449
Effective search space used: 6288679449
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001806
         (1843 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003357836.1| PREDICTED: isopentenyl-diphosphate Delta-iso...   301   8e-82

>ref|XP_003357836.1| PREDICTED: isopentenyl-diphosphate Delta-isomerase 1-like [Sus
           scrofa].
          Length = 193

 Score =  301 bits (771), Expect = 8e-82
 Identities = 148/148 (100%), Positives = 148/148 (100%)
 Frame = +2

Query: 308 EKSAAERSPCDAGPLRSPGLRARSPTMPEINTDHLDAQQVQLLAEMCILIDENDRRIGAE 487
           EKSAAERSPCDAGPLRSPGLRARSPTMPEINTDHLDAQQVQLLAEMCILIDENDRRIGAE
Sbjct: 35  EKSAAERSPCDAGPLRSPGLRARSPTMPEINTDHLDAQQVQLLAEMCILIDENDRRIGAE 94

Query: 488 TKKNCHLNENIKKGLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFSNACCSHPLSTPG 667
           TKKNCHLNENIKKGLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFSNACCSHPLSTPG
Sbjct: 95  TKKNCHLNENIKKGLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFSNACCSHPLSTPG 154

Query: 668 ELEENDAIGVRRAAQRRLKAELGIPLEE 751
           ELEENDAIGVRRAAQRRLKAELGIPLEE
Sbjct: 155 ELEENDAIGVRRAAQRRLKAELGIPLEE 182


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 37,634,257
Number of extensions: 1014248
Number of successful extensions: 3050
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3043
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 509
Effective length of database: 8,729,747
Effective search space: 4443441223
Effective search space used: 4443441223
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001806
         (1843 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr10                                                        1865   0.0  

>Sscrofa_Chr10 
||          Length = 79102373

 Score = 1865 bits (941), Expect = 0.0
 Identities = 986/1002 (98%), Gaps = 1/1002 (0%)
 Strand = Plus / Plus

                                                                            
Query: 750      aggttcctccagaagaaatcaattatctgacacgaatttactataaggctcagtcggatg 809
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75370217 aggttcctccagaagaaatcaattatctgacacgaatttactataaggctcagtcggatg 75370276

                                                                            
Query: 810      gtatctggggagaacatgaaattgattacatcttgttgatgaagaaggatgtaaccctga 869
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75370277 gtatctggggagaacatgaaattgattacatcttgttgatgaagaaggatgtaaccctga 75370336

                                                                            
Query: 870      atccagatcccaatgagattaaaagccactgttatgtttcacaggaagaactaaaggaac 929
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75370337 atccagatcccaatgagattaaaagccactgttatgtttcacaggaagaactaaaggaac 75370396

                                                                            
Query: 930      ttctgagaaaggcagccaggggtgaagttaaggtgactccgtggtttcagatgattgcag 989
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75370397 ttctgagaaaggcagccaggggtgaagttaaggtgactccgtggtttcagatgattgcag 75370456

                                                                            
Query: 990      ataggtttctctttcactggtgggataacttaaatcactggaatcagtttgttgatcacg 1049
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75370457 ataggtttctctttcactggtgggataacttaaatcactggaatcagtttgttgatcacg 75370516

                                                                            
Query: 1050     agaaaatacatagaatgtaaacgcggagaggaacgcgtgtaaagtaccgacgattcctct 1109
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75370517 agaaaatacatagaatgtaaacgcggagaggaacgcgtgtaaagtaccgacgattcctct 75370576

                                                                            
Query: 1110     actgaaagctgaagatgaatttcttaaaaatttggttccccattggaactcattggaaac 1169
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75370577 actgaaagctgaagatgaatttcttaaaaatttggttccccattggaactcattggaaac 75370636

                                                                            
Query: 1170     actgatatttcacaaccagaatttgtgtggaaaagaattcttaattctgtatcctacacc 1229
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75370637 actgatatttcacaaccagaatttgtgtggaaaagaattcttaattctgtatcctacacc 75370696

                                                                            
Query: 1230     ccgtgtatgtaaactgctgtttgccaaaaacatttctgagagatgtttgtaaaaaagaga 1289
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75370697 ccgtgtatgtaaactgctgtttgccaaaaacatttctgagagatgtttgtaaaaaagaga 75370756

                                                                            
Query: 1290     gcaaataagcttaattgagcttatctaaatagcagggtcatgacaaatttgaataagtga 1349
                |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 75370757 gcaaataaacttaattgagcctatctaaatagcagggtcatgacaaatttgaataagtga 75370816

                                                                            
Query: 1350     agctcttcatttttgagatattgttataaacattttcagaagattggtagagcctttaga 1409
                |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 75370817 agctcttcatttttgagata-tgttataaacattttcagaagattggtagagcctttaga 75370875

                                                                            
Query: 1410     catttgccagctacttgacatagctttaaannnnnnnatgcgccaaaatcatgcataatg 1469
                ||||||||||||||||||||||||||||||       ||| |||||||||||||||||||
Sbjct: 75370876 catttgccagctacttgacatagctttaaatttttttatgggccaaaatcatgcataatg 75370935

                                                                            
Query: 1470     gaacctttttgcttcaccgcttcgaagtggttcacagtacttttcacattaagagatgac 1529
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75370936 gaacctttttgcttcaccgcttcgaagtggttcacagtacttttcacattaagagatgac 75370995

                                                                            
Query: 1530     tgctcatagagcagagcaggttcagaggcatggaatggtatacatacatcctgacttctg 1589
                |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 75370996 tgctcatacagcagagcaggttcagaggcatggaatggtatatatacatcctgacttctg 75371055

                                                                            
Query: 1590     ccattgtagctgaattccgtggtttaatcattctggatgcattgatggcttctggtaaac 1649
                ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 75371056 ccattgtagctgaattccgtggtgtaatcattctggacgcattgatggcttctggtaaac 75371115

                                                                            
Query: 1650     acgggttaggttaagtcattacaacagcctttgcccattgggattggcaagcctgtgttc 1709
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75371116 acgggttaggttaagtcattacaacagcctttgcccattgggattggcaagcctgtgttc 75371175

                                                          
Query: 1710     aggattcctgtgggcagacaggctgtgtggaacatggagctt 1751
                ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 75371176 aggattcctgtgggcagacagactgtgtggaacatggagctt 75371217



 Score = 1857 bits (937), Expect = 0.0
 Identities = 986/1002 (98%), Gaps = 2/1002 (0%)
 Strand = Plus / Minus

                                                                            
Query: 750      aggttcctccagaagaaatcaattatctgacacgaatttactataaggctcagtcggatg 809
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75598738 aggttcctccagaagaaatcaattatctgacacgaatttactataaggctcagtcggatg 75598679

                                                                            
Query: 810      gtatctggggagaacatgaaattgattacatcttgttgatgaagaaggatgtaaccctga 869
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75598678 gtatctggggagaacatgaaattgattacatcttgttgatgaagaaggatgtaaccctga 75598619

                                                                            
Query: 870      atccagatcccaatgagattaaaagccactgttatgtttcacaggaagaactaaaggaac 929
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75598618 atccagatcccaatgagattaaaagccactgttatgtttcacaggaagaactaaaggaac 75598559

                                                                            
Query: 930      ttctgagaaaggcagccaggggtgaagttaaggtgactccgtggtttcagatgattgcag 989
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75598558 ttctgagaaaggcagccaggggtgaagttaaggtgactccgtggtttcagatgattgcag 75598499

                                                                            
Query: 990      ataggtttctctttcactggtgggataacttaaatcactggaatcagtttgttgatcacg 1049
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75598498 ataggtttctctttcactggtgggataacttaaatcactggaatcagtttgttgatcacg 75598439

                                                                            
Query: 1050     agaaaatacatagaatgtaaacgcggagaggaacgcgtgtaaagtaccgacgattcctct 1109
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75598438 agaaaatacatagaatgtaaacgcggagaggaacgcgtgtaaagtaccgacgattcctct 75598379

                                                                            
Query: 1110     actgaaagctgaagatgaatttcttaaaaatttggttccccattggaactcattggaaac 1169
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75598378 actgaaagctgaagatgaatttcttaaaaatttggttccccattggaactcattggaaac 75598319

                                                                            
Query: 1170     actgatatttcacaaccagaatttgtgtggaaaagaattcttaattctgtatcctacacc 1229
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75598318 actgatatttcacaaccagaatttgtgtggaaaagaattcttaattctgtatcctacacc 75598259

                                                                            
Query: 1230     ccgtgtatgtaaactgctgtttgccaaaaacatttctgagagatgtttgtaaaaaagaga 1289
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75598258 ccgtgtatgtaaactgctgtttgccaaaaacatttctgagagatgtttgtaaaaaagaga 75598199

                                                                            
Query: 1290     gcaaataagcttaattgagcttatctaaatagcagggtcatgacaaatttgaataagtga 1349
                |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 75598198 gcaaataaacttaattgagc-tatctaaatagcagggtcatgacaaatttgaataagtga 75598140

                                                                            
Query: 1350     agctcttcatttttgagatattgttataaacattttcagaagattggtagagcctttaga 1409
                |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 75598139 agctcttcatttttgagata-tgttataaacattttcagaagattggtagagcctttaga 75598081

                                                                            
Query: 1410     catttgccagctacttgacatagctttaaannnnnnnatgcgccaaaatcatgcataatg 1469
                ||||||||||||||||||||||||||||||       ||| |||||||||||||||||||
Sbjct: 75598080 catttgccagctacttgacatagctttaaatttttttatgggccaaaatcatgcataatg 75598021

                                                                            
Query: 1470     gaacctttttgcttcaccgcttcgaagtggttcacagtacttttcacattaagagatgac 1529
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75598020 gaacctttttgcttcaccgcttcgaagtggttcacagtacttttcacattaagagatgac 75597961

                                                                            
Query: 1530     tgctcatagagcagagcaggttcagaggcatggaatggtatacatacatcctgacttctg 1589
                |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 75597960 tgctcatacagcagagcaggttcagaggcatggaatggtatatatacatcctgacttctg 75597901

                                                                            
Query: 1590     ccattgtagctgaattccgtggtttaatcattctggatgcattgatggcttctggtaaac 1649
                ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 75597900 ccattgtagctgaattccgtggtgtaatcattctggacgcattgatggcttctggtaaac 75597841

                                                                            
Query: 1650     acgggttaggttaagtcattacaacagcctttgcccattgggattggcaagcctgtgttc 1709
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75597840 acgggttaggttaagtcattacaacagcctttgcccattgggattggcaagcctgtgttc 75597781

                                                          
Query: 1710     aggattcctgtgggcagacaggctgtgtggaacatggagctt 1751
                ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 75597780 aggattcctgtgggcagacagactgtgtggaacatggagctt 75597739



 Score =  434 bits (219), Expect = e-119
 Identities = 219/219 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1        cccttctctcctcgcgctctgggtcgctccgccgactagcggccgccgcttagctgccta 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75367601 cccttctctcctcgcgctctgggtcgctccgccgactagcggccgccgcttagctgccta 75367660

                                                                            
Query: 61       gggagtgcgccgagaggaactgtgccttggcctgggggccaatctgcgacccaccgtccg 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75367661 gggagtgcgccgagaggaactgtgccttggcctgggggccaatctgcgacccaccgtccg 75367720

                                                                            
Query: 121      gcgagaggcacctagagtgccgggcgtggcgccaccgcgcgaccgtgacgtcaggcgcgg 180
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75367721 gcgagaggcacctagagtgccgggcgtggcgccaccgcgcgaccgtgacgtcaggcgcgg 75367780

                                                       
Query: 181      gccggcgcgccattggccggcgggcatgtggcgcgctct 219
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 75367781 gccggcgcgccattggccggcgggcatgtggcgcgctct 75367819



 Score =  434 bits (219), Expect = e-119
 Identities = 219/219 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1        cccttctctcctcgcgctctgggtcgctccgccgactagcggccgccgcttagctgccta 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75601354 cccttctctcctcgcgctctgggtcgctccgccgactagcggccgccgcttagctgccta 75601295

                                                                            
Query: 61       gggagtgcgccgagaggaactgtgccttggcctgggggccaatctgcgacccaccgtccg 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75601294 gggagtgcgccgagaggaactgtgccttggcctgggggccaatctgcgacccaccgtccg 75601235

                                                                            
Query: 121      gcgagaggcacctagagtgccgggcgtggcgccaccgcgcgaccgtgacgtcaggcgcgg 180
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75601234 gcgagaggcacctagagtgccgggcgtggcgccaccgcgcgaccgtgacgtcaggcgcgg 75601175

                                                       
Query: 181      gccggcgcgccattggccggcgggcatgtggcgcgctct 219
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 75601174 gccggcgcgccattggccggcgggcatgtggcgcgctct 75601136



 Score =  349 bits (176), Expect = 3e-93
 Identities = 176/176 (100%)
 Strand = Plus / Plus

                                                                            
Query: 353      aggtctccaggactgcgcgcgcgttcgcccacgatgcccgagataaacacggaccatctg 412
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75368173 aggtctccaggactgcgcgcgcgttcgcccacgatgcccgagataaacacggaccatctg 75368232

                                                                            
Query: 413      gacgcgcagcaggtgcagctgctggcggagatgtgcatcctcatcgacgagaacgaccgc 472
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75368233 gacgcgcagcaggtgcagctgctggcggagatgtgcatcctcatcgacgagaacgaccgc 75368292

                                                                        
Query: 473      aggatcggggcggagaccaagaagaactgtcacctgaacgagaacatcaagaaagg 528
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75368293 aggatcggggcggagaccaagaagaactgtcacctgaacgagaacatcaagaaagg 75368348



 Score =  349 bits (176), Expect = 3e-93
 Identities = 176/176 (100%)
 Strand = Plus / Minus

                                                                            
Query: 353      aggtctccaggactgcgcgcgcgttcgcccacgatgcccgagataaacacggaccatctg 412
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75600782 aggtctccaggactgcgcgcgcgttcgcccacgatgcccgagataaacacggaccatctg 75600723

                                                                            
Query: 413      gacgcgcagcaggtgcagctgctggcggagatgtgcatcctcatcgacgagaacgaccgc 472
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75600722 gacgcgcagcaggtgcagctgctggcggagatgtgcatcctcatcgacgagaacgaccgc 75600663

                                                                        
Query: 473      aggatcggggcggagaccaagaagaactgtcacctgaacgagaacatcaagaaagg 528
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75600662 aggatcggggcggagaccaagaagaactgtcacctgaacgagaacatcaagaaagg 75600607



 Score =  299 bits (151), Expect = 3e-78
 Identities = 178/187 (95%)
 Strand = Plus / Plus

                                                                            
Query: 1508     acttttcacattaagagatgactgctcatagagcagagcaggttcagaggcatggaatgg 1567
                ||||| || |||||||||||| |||||||| ||||||||||| ||| |||||||||||||
Sbjct: 75363944 actttccatattaagagatgaatgctcatacagcagagcaggatcaaaggcatggaatgg 75364003

                                                                            
Query: 1568     tatacatacatcctgacttctgccattgtagctgaattccgtggtttaatcattctggat 1627
                ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| 
Sbjct: 75364004 tatacatacatcctgacttctgccattgtagctgaattccgtggtgtaatcattctggac 75364063

                                                                            
Query: 1628     gcattgatggcttctggtaaacacgggttaggttaagtcattacaacagcctttgcccat 1687
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 75364064 gcattgatggcttctggtaaacacgggttaggttaagtcattacaacagcctttgctcat 75364123

                       
Query: 1688     tgggatt 1694
                |||||||
Sbjct: 75364124 tgggatt 75364130



 Score =  299 bits (151), Expect = 3e-78
 Identities = 178/187 (95%)
 Strand = Plus / Plus

                                                                            
Query: 1508     acttttcacattaagagatgactgctcatagagcagagcaggttcagaggcatggaatgg 1567
                ||||| || |||||||||||| |||||||| ||||||||||| ||| |||||||||||||
Sbjct: 75538268 actttccatattaagagatgaatgctcatacagcagagcaggatcaaaggcatggaatgg 75538327

                                                                            
Query: 1568     tatacatacatcctgacttctgccattgtagctgaattccgtggtttaatcattctggat 1627
                ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| 
Sbjct: 75538328 tatacatacatcctgacttctgccattgtagctgaattccgtggtgtaatcattctggac 75538387

                                                                            
Query: 1628     gcattgatggcttctggtaaacacgggttaggttaagtcattacaacagcctttgcccat 1687
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 75538388 gcattgatggcttctggtaaacacgggttaggttaagtcattacaacagcctttgctcat 75538447

                       
Query: 1688     tgggatt 1694
                |||||||
Sbjct: 75538448 tgggatt 75538454



 Score =  276 bits (139), Expect = 4e-71
 Identities = 139/139 (100%)
 Strand = Plus / Plus

                                                                            
Query: 615      ttccaggttgtttcagtaatgcttgttgcagccatccactaagcactccaggagagcttg 674
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75369195 ttccaggttgtttcagtaatgcttgttgcagccatccactaagcactccaggagagcttg 75369254

                                                                            
Query: 675      aagaaaatgacgcgattggagtgagaagagcagcacagaggcgtttaaaggctgaactgg 734
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75369255 aagaaaatgacgcgattggagtgagaagagcagcacagaggcgtttaaaggctgaactgg 75369314

                                   
Query: 735      gcattcctctggaagaggt 753
                |||||||||||||||||||
Sbjct: 75369315 gcattcctctggaagaggt 75369333



 Score =  276 bits (139), Expect = 4e-71
 Identities = 139/139 (100%)
 Strand = Plus / Minus

                                                                            
Query: 615      ttccaggttgtttcagtaatgcttgttgcagccatccactaagcactccaggagagcttg 674
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75599760 ttccaggttgtttcagtaatgcttgttgcagccatccactaagcactccaggagagcttg 75599701

                                                                            
Query: 675      aagaaaatgacgcgattggagtgagaagagcagcacagaggcgtttaaaggctgaactgg 734
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75599700 aagaaaatgacgcgattggagtgagaagagcagcacagaggcgtttaaaggctgaactgg 75599641

                                   
Query: 735      gcattcctctggaagaggt 753
                |||||||||||||||||||
Sbjct: 75599640 gcattcctctggaagaggt 75599622



 Score =  194 bits (98), Expect = 1e-46
 Identities = 98/98 (100%)
 Strand = Plus / Plus

                                                                            
Query: 526      aggattattgcaccgggcttttagtgtcttcctgttcaacactgaaaataaacttctgct 585
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75368595 aggattattgcaccgggcttttagtgtcttcctgttcaacactgaaaataaacttctgct 75368654

                                                      
Query: 586      ccaacaacgatcagatgccaaaattacttttccaggtt 623
                ||||||||||||||||||||||||||||||||||||||
Sbjct: 75368655 ccaacaacgatcagatgccaaaattacttttccaggtt 75368692



 Score =  194 bits (98), Expect = 1e-46
 Identities = 98/98 (100%)
 Strand = Plus / Minus

                                                                            
Query: 526      aggattattgcaccgggcttttagtgtcttcctgttcaacactgaaaataaacttctgct 585
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75600360 aggattattgcaccgggcttttagtgtcttcctgttcaacactgaaaataaacttctgct 75600301

                                                      
Query: 586      ccaacaacgatcagatgccaaaattacttttccaggtt 623
                ||||||||||||||||||||||||||||||||||||||
Sbjct: 75600300 ccaacaacgatcagatgccaaaattacttttccaggtt 75600263



 Score =  109 bits (55), Expect = 5e-21
 Identities = 55/55 (100%)
 Strand = Plus / Plus

                                                                       
Query: 302      ctgcgagagaaaagcgctgctgagcggagtccctgcgacgccgggccgctgaggt 356
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75367902 ctgcgagagaaaagcgctgctgagcggagtccctgcgacgccgggccgctgaggt 75367956



 Score =  109 bits (55), Expect = 5e-21
 Identities = 55/55 (100%)
 Strand = Plus / Minus

                                                                       
Query: 302      ctgcgagagaaaagcgctgctgagcggagtccctgcgacgccgggccgctgaggt 356
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75601053 ctgcgagagaaaagcgctgctgagcggagtccctgcgacgccgggccgctgaggt 75600999


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 48,655,430
Number of extensions: 342
Number of successful extensions: 342
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 337
Number of HSP's successfully gapped: 16
Length of query: 1843
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1821
Effective length of database: 2,808,408,574
Effective search space: 5114112013254
Effective search space used: 5114112013254
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)