Animal-Genome cDNA 20110601C-001812


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001812
         (1328 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_001249306.1| PREDICTED: carbonyl reductase-like [Bos taur...   474   e-134
Alignment   gi|NP_001029685.1| carbonyl reductase [NADPH] 1 [Bos taurus].        471   e-133
Alignment   gi|XP_002702394.1| PREDICTED: carbonyl reductase-like [Bos taur...   455   e-128
Alignment   gi|NP_001030258.1| 20-beta-hydroxysteroid dehydrogenase-like [B...   436   e-122
Alignment   gi|XP_001249559.3| PREDICTED: 20-beta-hydroxysteroid dehydrogen...   436   e-122
Alignment   gi|NP_001069202.1| carbonyl reductase [NADPH] 3 [Bos taurus].        421   e-118
Alignment   gi|XP_002685211.1| PREDICTED: 20-beta-hydroxysteroid dehydrogen...   221   1e-57
Alignment   gi|NP_001093783.1| dehydrogenase/reductase SDR family member 12...    68   2e-11
Alignment   gi|NP_001068813.1| retinol dehydrogenase 13 [Bos taurus].             68   2e-11
Alignment   gi|NP_001069155.1| dehydrogenase/reductase SDR family member 13...    67   4e-11

>ref|XP_001249306.1| PREDICTED: carbonyl reductase-like [Bos taurus].
          Length = 277

 Score =  474 bits (1221), Expect = e-134
 Identities = 236/274 (86%), Positives = 253/274 (92%)
 Frame = +2

Query: 314  MSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH 493
            MSS+  VA+VTG NKGIG  IVRDLC++FSGDV+LTARD ARG+AAVQQLQAEGLSP FH
Sbjct: 1    MSSSNCVALVTGANKGIGFVIVRDLCRRFSGDVVLTARDEARGRAAVQQLQAEGLSPLFH 60

Query: 494  QLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRN 673
            QLDIDD +SI+ALRDFL KEYGGL+VLVNNAGIAFKT D TPFHIQAEVTMKTNF GTR+
Sbjct: 61   QLDIDDRQSIRALRDFLRKEYGGLDVLVNNAGIAFKTADTTPFHIQAEVTMKTNFFGTRD 120

Query: 674  VCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTK 853
            VCTELLPLIKPQGRVVNVSS+ SV +L  CSPELQQKF+SETITEEELVGLMNKFVEDTK
Sbjct: 121  VCTELLPLIKPQGRVVNVSSSVSVSSLKKCSPELQQKFQSETITEEELVGLMNKFVEDTK 180

Query: 854  NGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAGPKA 1033
            NGVH+KEGWP TAYGVTKIGVTVLSRI+ARK+SEQR GDKILLNACCPGWVRTDM GPKA
Sbjct: 181  NGVHRKEGWPDTAYGVTKIGVTVLSRIHARKMSEQRGGDKILLNACCPGWVRTDMGGPKA 240

Query: 1034 PKSPEEGAETPVYLALLPSDAEGPHGQFVSEKKV 1135
            PKSPEEGAETPVYLALLP DAEGPHGQFV EK+V
Sbjct: 241  PKSPEEGAETPVYLALLPPDAEGPHGQFVHEKEV 274


>ref|NP_001029685.1| carbonyl reductase [NADPH] 1 [Bos taurus].
          Length = 277

 Score =  471 bits (1212), Expect = e-133
 Identities = 235/274 (85%), Positives = 252/274 (91%)
 Frame = +2

Query: 314  MSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH 493
            MSS+  VA+VTG NKGIG  IVRDLC++FSGDV+LTARD ARG+AAVQQLQAEGLSP FH
Sbjct: 1    MSSSNCVALVTGANKGIGFVIVRDLCRRFSGDVVLTARDEARGRAAVQQLQAEGLSPLFH 60

Query: 494  QLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRN 673
            QLDIDD +SI+ALRDFL KEYGGL+VLVNNAGIAFKT D TPFHIQAEVTMKTNF GTR+
Sbjct: 61   QLDIDDRQSIRALRDFLRKEYGGLDVLVNNAGIAFKTADTTPFHIQAEVTMKTNFFGTRD 120

Query: 674  VCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTK 853
            VCTELLPLIKPQGRVVNVSS  SV +L  CS ELQQKF+SETITEEELVGLMNKFVEDTK
Sbjct: 121  VCTELLPLIKPQGRVVNVSSFVSVNSLKKCSRELQQKFRSETITEEELVGLMNKFVEDTK 180

Query: 854  NGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAGPKA 1033
            NGVH+KEGWP TAYGVTKIGVTVLSRI+ARKLSEQR GDKILLNACCPGWVRTDM GPKA
Sbjct: 181  NGVHRKEGWPDTAYGVTKIGVTVLSRIHARKLSEQRGGDKILLNACCPGWVRTDMGGPKA 240

Query: 1034 PKSPEEGAETPVYLALLPSDAEGPHGQFVSEKKV 1135
             KSPEEGAETPVYLALLPSDAEGPHG+F+SEK+V
Sbjct: 241  SKSPEEGAETPVYLALLPSDAEGPHGEFISEKRV 274


>ref|XP_002702394.1| PREDICTED: carbonyl reductase-like [Bos taurus].
          Length = 277

 Score =  455 bits (1170), Expect = e-128
 Identities = 228/274 (83%), Positives = 246/274 (89%)
 Frame = +2

Query: 314  MSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH 493
            MSS+ RVA+VTG NKG+G AIVR L   F GDV+LTA D A+G+AAVQQLQ +GLSP FH
Sbjct: 1    MSSSTRVALVTGANKGLGFAIVRALAGGFQGDVVLTAPDEAQGRAAVQQLQTQGLSPLFH 60

Query: 494  QLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRN 673
            QLDIDD +SI+ALRDFL KEYGGL+VLVNNAGIAFKT D TPFHIQAEVTMKTNF GTR+
Sbjct: 61   QLDIDDRQSIRALRDFLRKEYGGLDVLVNNAGIAFKTADTTPFHIQAEVTMKTNFFGTRD 120

Query: 674  VCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTK 853
            VCTELLPLIKPQGRVVNVSS  SV +L  CS ELQQKF+SETITEEELVGLMNKFVEDTK
Sbjct: 121  VCTELLPLIKPQGRVVNVSSFVSVNSLKKCSRELQQKFRSETITEEELVGLMNKFVEDTK 180

Query: 854  NGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAGPKA 1033
            NGVH+KE WP TAYGVTKIGVTVLSRI+ARKLSEQR GDKILLNACCPGWVRTDM GPKA
Sbjct: 181  NGVHRKECWPDTAYGVTKIGVTVLSRIHARKLSEQRGGDKILLNACCPGWVRTDMGGPKA 240

Query: 1034 PKSPEEGAETPVYLALLPSDAEGPHGQFVSEKKV 1135
             KSPEEGAETPVYLALLPSDAEGPHG+F+SEK+V
Sbjct: 241  SKSPEEGAETPVYLALLPSDAEGPHGEFISEKRV 274


>ref|NP_001030258.1| 20-beta-hydroxysteroid dehydrogenase-like [Bos taurus].
          Length = 286

 Score =  436 bits (1120), Expect = e-122
 Identities = 219/275 (79%), Positives = 242/275 (88%), Gaps = 1/275 (0%)
 Frame = +2

Query: 314  MSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH 493
            MSS+ RVA+VTG NKG+G AIVRDLC++F GDV+LTARD ARG+AAVQQLQAEGLSPRFH
Sbjct: 1    MSSSTRVALVTGANKGLGFAIVRDLCRRFPGDVVLTARDEARGRAAVQQLQAEGLSPRFH 60

Query: 494  QLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRN 673
            QLDI DL+SI ALRDFL KEYGGL+VLVNNA IAF+  DPTP  I+AE+TMKTNF GTR+
Sbjct: 61   QLDITDLQSIHALRDFLRKEYGGLDVLVNNAAIAFQLSDPTPTPIKAEMTMKTNFFGTRD 120

Query: 674  VCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTK 853
            +CTELLPL+KPQGRVVN+SS    +AL +CSPELQQK +SETITEEELVGLMNKFVEDTK
Sbjct: 121  ICTELLPLMKPQGRVVNMSSGWGFKALESCSPELQQKLRSETITEEELVGLMNKFVEDTK 180

Query: 854  NGVHKKEGWP-STAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAGPK 1030
            NGVH+KEGWP +  YGV KIG+T LSRI ARKLSEQR GDKILLNACCPGWVRTDM G K
Sbjct: 181  NGVHRKEGWPDNNIYGVAKIGITALSRIQARKLSEQRGGDKILLNACCPGWVRTDMGGSK 240

Query: 1031 APKSPEEGAETPVYLALLPSDAEGPHGQFVSEKKV 1135
            A KS EEG ETP+YLALLPSDAEGPHGQFV EKKV
Sbjct: 241  AFKSLEEGIETPMYLALLPSDAEGPHGQFVHEKKV 275


>ref|XP_001249559.3| PREDICTED: 20-beta-hydroxysteroid dehydrogenase-like [Bos taurus].
          Length = 286

 Score =  436 bits (1120), Expect = e-122
 Identities = 219/275 (79%), Positives = 242/275 (88%), Gaps = 1/275 (0%)
 Frame = +2

Query: 314  MSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH 493
            MSS+ RVA+VTG NKG+G AIVRDLC++F GDV+LTARD ARG+AAVQQLQAEGLSPRFH
Sbjct: 1    MSSSTRVALVTGANKGLGFAIVRDLCRRFPGDVVLTARDEARGRAAVQQLQAEGLSPRFH 60

Query: 494  QLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRN 673
            QLDI DL+SI ALRDFL KEYGGL+VLVNNA IAF+  DPTP  I+AE+TMKTNF GTR+
Sbjct: 61   QLDITDLQSIHALRDFLRKEYGGLDVLVNNAAIAFQLSDPTPTPIKAEMTMKTNFFGTRD 120

Query: 674  VCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTK 853
            +CTELLPL+KPQGRVVN+SS    +AL +CSPELQQK +SETITEEELVGLMNKFVEDTK
Sbjct: 121  ICTELLPLMKPQGRVVNMSSGWGFKALESCSPELQQKLRSETITEEELVGLMNKFVEDTK 180

Query: 854  NGVHKKEGWP-STAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAGPK 1030
            NGVH+KEGWP +  YGV KIG+T LSRI ARKLSEQR GDKILLNACCPGWVRTDM G K
Sbjct: 181  NGVHRKEGWPDNNIYGVAKIGITALSRIQARKLSEQRGGDKILLNACCPGWVRTDMGGSK 240

Query: 1031 APKSPEEGAETPVYLALLPSDAEGPHGQFVSEKKV 1135
            A KS EEG ETP+YLALLPSDAEGPHGQFV EKKV
Sbjct: 241  AFKSLEEGIETPMYLALLPSDAEGPHGQFVHEKKV 275


>ref|NP_001069202.1| carbonyl reductase [NADPH] 3 [Bos taurus].
          Length = 277

 Score =  421 bits (1082), Expect = e-118
 Identities = 206/276 (74%), Positives = 239/276 (86%)
 Frame = +2

Query: 314  MSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH 493
            MSS  RVA+VTG NKGIG AI RDLC++F GDV+LTARD ARG+AAVQQLQAEGLSPRFH
Sbjct: 1    MSSYTRVALVTGANKGIGFAIARDLCREFPGDVVLTARDKARGRAAVQQLQAEGLSPRFH 60

Query: 494  QLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRN 673
            QLDIDDL+SI+ALRDFL KEYGGLNVLVNNAGIAFKT DPTPF IQAE+T+KTNF  TRN
Sbjct: 61   QLDIDDLQSIRALRDFLRKEYGGLNVLVNNAGIAFKTDDPTPFDIQAEMTLKTNFFATRN 120

Query: 674  VCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTK 853
            VCTELLP++KP GRVVNVSS++  +AL NCS +LQ+KF+ ET+TEE+LV LM KFVEDTK
Sbjct: 121  VCTELLPIVKPHGRVVNVSSSQGSQALENCSEDLQEKFRCETLTEEDLVDLMKKFVEDTK 180

Query: 854  NGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAGPKA 1033
            N VH++EGWP++AYGV+K+GVTVLSRI AR+L E+R  D+ILLNACCPGWV+TD+ G  A
Sbjct: 181  NEVHEREGWPNSAYGVSKLGVTVLSRILARRLEEKRKADRILLNACCPGWVKTDLGGAHA 240

Query: 1034 PKSPEEGAETPVYLALLPSDAEGPHGQFVSEKKV*N 1141
             ++ EEGAETPVYLALLP DA  PHGQ V +K V N
Sbjct: 241  SRTVEEGAETPVYLALLPPDATEPHGQLVRDKVVQN 276


>ref|XP_002685211.1| PREDICTED: 20-beta-hydroxysteroid dehydrogenase-like [Bos taurus].
          Length = 210

 Score =  221 bits (563), Expect = 1e-57
 Identities = 114/145 (78%), Positives = 123/145 (84%), Gaps = 1/145 (0%)
 Frame = +2

Query: 710  GRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTKNGVHKKEGW-PS 886
            GRVVNVSS  S  AL  C+ +LQQK +SETITEEELVGLMNKFVEDTKNGVH+KEGW  +
Sbjct: 16   GRVVNVSSRVSFAALKTCTSKLQQKLRSETITEEELVGLMNKFVEDTKNGVHRKEGWLDN 75

Query: 887  TAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAGPKAPKSPEEGAETP 1066
              YGV KIG+T LSRI ARKLSEQR  DKILLNACCPGWVRTDMAG KAPKSPEEGA  P
Sbjct: 76   NIYGVVKIGITALSRIQARKLSEQRGQDKILLNACCPGWVRTDMAGLKAPKSPEEGA--P 133

Query: 1067 VYLALLPSDAEGPHGQFVSEKKV*N 1141
            VYLALLPSDA+G HG+FVSEKK+ N
Sbjct: 134  VYLALLPSDAKGRHGEFVSEKKLYN 158


>ref|NP_001093783.1| dehydrogenase/reductase SDR family member 12 [Bos taurus].
          Length = 317

 Score = 68.2 bits (165), Expect = 2e-11
 Identities = 79/297 (26%), Positives = 122/297 (41%), Gaps = 15/297 (5%)
 Frame = +2

Query: 329  RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFHQLDID 508
            R  +VTGGN GIG A   ++ ++  G V L  RD +R + A  ++  E  +     L I 
Sbjct: 41   RAFMVTGGNSGIGKATAMEIAKR-GGTVHLVCRDHSRAEGAKAEIIRESGNQNIF-LHIV 98

Query: 509  DLRSIQALRDFL--LKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRNVCT 682
            DL   +++  F+   K+   LNVL+NNAG      + T   +  E    TN LG   + T
Sbjct: 99   DLSLPKSVWKFVENFKQEHTLNVLINNAGCMVNKRELTEDGL--EKNFATNTLGVYVLTT 156

Query: 683  ELLPLIKPQG--RVVNVSSTES-VRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTK 853
             L+P+++ +   RV+ VSS    V+ LN   P+ ++     T+           + ++ +
Sbjct: 157  ALIPVLEKEHDPRVITVSSGGMLVQKLNTDDPQSERTAFDGTMV----------YAQNKR 206

Query: 854  NGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAGPKA 1033
              V   E W                          RA   I  +   PGWV T       
Sbjct: 207  QQVVLTERWA-------------------------RAHPAIHFSCMHPGWVDTPGVRLSM 241

Query: 1034 P----------KSPEEGAETPVYLALLPSDAEGPHGQFVSEKKV*NGVFPLRATPGS 1174
            P          +S  +GA+T ++LAL P+    P G F  ++K      PL  T  S
Sbjct: 242  PGFHARLGARLRSEAQGADTVLWLALAPAATAQPSGCFFQDRKPAPTHLPLARTSSS 298


>ref|NP_001068813.1| retinol dehydrogenase 13 [Bos taurus].
          Length = 335

 Score = 68.2 bits (165), Expect = 2e-11
 Identities = 80/288 (27%), Positives = 133/288 (46%), Gaps = 25/288 (8%)
 Frame = +2

Query: 329  RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFHQLDID 508
            +  +VTG N GIG     +L ++  G+++L  RD+ + +AA ++++ E L+ R +   +D
Sbjct: 39   KTVIVTGANTGIGKQTALELAKR-GGNIILACRDMEKCEAAAKEIRGETLNHRVNARHLD 97

Query: 509  DLRSIQALRDFLLK---EYGGLNVLVNNAGIA----FKTVDPTPFHIQAEVTMKTNFLGT 667
             L S++++R+F  K   E   +++L+NNA +     + T D   F +Q  V    +FL T
Sbjct: 98   -LASLKSIREFAAKVTEEEEHVHILINNAAVMRCPHWTTED--GFEMQLGVNYLGHFLLT 154

Query: 668  RNVCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVED 847
             N+  + L    P  R++NVSS   V               +  I  E+L     K+  D
Sbjct: 155  -NLLLDKLKASAP-SRIINVSSLAHV---------------AGHIDFEDLNWEKRKY--D 195

Query: 848  TKNGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMA-- 1021
            TK            AY  +K+ V V ++  +R+L     G  + +NA  PG  RT++   
Sbjct: 196  TK-----------AAYCQSKLAVVVSTKELSRRLQ----GTGVTVNALHPGVARTELGRH 240

Query: 1022 -------------GP---KAPKSPEEGAETPVYLALLPSDAEGPHGQF 1117
                         GP      KSPE  A+  VYLA +  + EG  G++
Sbjct: 241  TGMHSSAFSSFTLGPIFWLLVKSPELAAQPSVYLA-VAEELEGVSGKY 287


>ref|NP_001069155.1| dehydrogenase/reductase SDR family member 13 precursor [Bos taurus].
          Length = 377

 Score = 67.0 bits (162), Expect = 4e-11
 Identities = 78/286 (27%), Positives = 119/286 (41%), Gaps = 19/286 (6%)
 Frame = +2

Query: 281  PCRGTAAPLPTMSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQ 460
            PCRG A      S   R AVVTG N GIG     +L ++    V+L  R   RG+AA   
Sbjct: 27   PCRGLA------SLRGRTAVVTGANSGIGKMTALELARR-GARVVLACRSRERGEAAAFD 79

Query: 461  LQAEGLSPR--FHQLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQA 634
            L+ E  +    F  LD+  L S++A     L     L++L++NAGI+       PF++  
Sbjct: 80   LRQESGNNEVIFMALDLASLASVRAFATAFLSSEPRLDILIHNAGISSCGRTREPFNL-- 137

Query: 635  EVTMKTNFLGTRNVCTELLPLIKPQ--GRVVNVSSTESVRALNNCSPELQQKFKSETITE 808
               ++ N +G   +   LLP +K     RVV VSS    R   +            T  +
Sbjct: 138  --LLRVNHIGPFLLTHLLLPRLKTSAPSRVVVVSSAAHRRGRLDF-----------TRLD 184

Query: 809  EELVGLMNKFVEDTKNGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNA 988
              +VG   +                  AY  +K+     + ++AR+L+ Q  G  +   A
Sbjct: 185  HPVVGWQQEL----------------RAYANSKLA----NVLFARELATQLEGTGVTCYA 224

Query: 989  CCPGWVRTDMAGPKAP---------------KSPEEGAETPVYLAL 1081
              PG V +++     P               ++P  GA+TP+Y AL
Sbjct: 225  AHPGPVNSELFLRHVPGWLRPLLRPLAWLVLRAPRGGAQTPLYCAL 270


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 51,833,319
Number of extensions: 1480228
Number of successful extensions: 6281
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 6242
Number of HSP's successfully gapped: 15
Length of query: 442
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 337
Effective length of database: 14,207,134
Effective search space: 4787804158
Effective search space used: 4787804158
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001812
         (1328 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_852675.1| PREDICTED: similar to Carbonyl reductase [NADPH...   474   e-133
Alignment   gi|XP_537903.1| PREDICTED: similar to Carbonyl reductase [NADPH...   431   e-121
Alignment   gi|XP_544873.2| PREDICTED: similar to carbonyl reductase 3 [Can...   426   e-119
Alignment   gi|XP_535589.2| PREDICTED: similar to Carbonyl reductase [NADPH...   426   e-119
Alignment   gi|XP_533000.2| PREDICTED: similar to Retinol dehydrogenase 12 ...    69   8e-12
Alignment   gi|XP_540096.2| PREDICTED: similar to retinol dehydrogenase 14 ...    65   1e-10
Alignment   gi|XP_854354.1| PREDICTED: similar to Retinol dehydrogenase 11 ...    65   2e-10
Alignment   gi|XP_548293.2| PREDICTED: similar to retinol dehydrogenase 11 ...    64   3e-10
Alignment   gi|XP_547866.2| PREDICTED: similar to retinol dehydrogenase 12 ...    64   4e-10
Alignment   gi|XP_854127.1| PREDICTED: similar to Retinol dehydrogenase 13 ...    63   6e-10

>ref|XP_852675.1| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent
            carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase)
            (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin
            dehydrogenase [NADP+]) [Canis familiaris].
          Length = 277

 Score =  474 bits (1219), Expect = e-133
 Identities = 235/274 (85%), Positives = 253/274 (92%)
 Frame = +2

Query: 314  MSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH 493
            MS+  RVA+VTG NKGIG AI R+LC+QFSGDV+LTARD ARG+AAVQQLQAEGLSPRFH
Sbjct: 1    MSAASRVALVTGANKGIGFAIARELCRQFSGDVVLTARDEARGRAAVQQLQAEGLSPRFH 60

Query: 494  QLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRN 673
             LDIDDL+SI+ALRDFL KEYGGL+VLVNNAGIAFKT DPTPFHIQAEVTMKTNF GTR+
Sbjct: 61   LLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKTNDPTPFHIQAEVTMKTNFFGTRD 120

Query: 674  VCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTK 853
            VCTELLPL+KPQGRVVNVSS  SVRAL +CSPELQQKF+SE ITEEELVGLMNKFVEDTK
Sbjct: 121  VCTELLPLMKPQGRVVNVSSVVSVRALKSCSPELQQKFRSEAITEEELVGLMNKFVEDTK 180

Query: 854  NGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAGPKA 1033
             GVH+ EGWP  AYGVTKIGVTVLSRI+ARKLSEQR  DKILLNACCPGWVRTDMAGP+A
Sbjct: 181  KGVHRNEGWPDNAYGVTKIGVTVLSRIHARKLSEQRRDDKILLNACCPGWVRTDMAGPRA 240

Query: 1034 PKSPEEGAETPVYLALLPSDAEGPHGQFVSEKKV 1135
            PKSPEEGAETPVYLALLPSDAEGPHG+F+ EKKV
Sbjct: 241  PKSPEEGAETPVYLALLPSDAEGPHGEFLMEKKV 274


>ref|XP_537903.1| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent
            carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase)
            (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin
            dehydrogenase [NADP+]) [Canis familiaris].
          Length = 296

 Score =  431 bits (1109), Expect = e-121
 Identities = 217/277 (78%), Positives = 238/277 (85%), Gaps = 3/277 (1%)
 Frame = +2

Query: 314  MSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH 493
            MS  +RVAVVTG NKG+G AI RDLC+ F GDV+LT+RD ARG+AAVQ L+AEGLSPRFH
Sbjct: 1    MSLALRVAVVTGANKGLGFAITRDLCRNFPGDVILTSRDEARGRAAVQHLKAEGLSPRFH 60

Query: 494  QLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRN 673
             LDID+L+SI+ALRDFL +EYGGL+VLVNNAGI F   DPTP HIQAEVT+KTNF GTR+
Sbjct: 61   LLDIDNLQSIRALRDFLWEEYGGLDVLVNNAGIVFTPDDPTPLHIQAEVTLKTNFFGTRD 120

Query: 674  VCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTK 853
            +CTELLPL+KPQGRVVNVSS  S  AL  CSPELQQKF SETITEEEL  LMNKF+ED K
Sbjct: 121  ICTELLPLVKPQGRVVNVSSIMSFLALKQCSPELQQKFTSETITEEELGMLMNKFLEDVK 180

Query: 854  NGVHKKEGWPS---TAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAG 1024
            NGVHKKEGWP     AY V+K+GVTVLSRI+ARKLSEQR  DKILLNACCPGWVRTDM G
Sbjct: 181  NGVHKKEGWPDIKIAAYSVSKMGVTVLSRIHARKLSEQRRDDKILLNACCPGWVRTDMGG 240

Query: 1025 PKAPKSPEEGAETPVYLALLPSDAEGPHGQFVSEKKV 1135
            PK  KSPEEGAETPVYLALLPSDAEGPHG+FV EKKV
Sbjct: 241  PKGIKSPEEGAETPVYLALLPSDAEGPHGEFVMEKKV 277


>ref|XP_544873.2| PREDICTED: similar to carbonyl reductase 3 [Canis familiaris].
          Length = 484

 Score =  426 bits (1096), Expect = e-119
 Identities = 212/295 (71%), Positives = 244/295 (82%)
 Frame = +2

Query: 257  GETRPIRCPCRGTAAPLPTMSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVA 436
            G   P+R P R    PLP MSS  RVA+VTG N+GIG AI R+LC+QFSGDV+LTARD A
Sbjct: 190  GARSPVRSP-RAPGPPLPAMSSCSRVALVTGANRGIGFAIARELCRQFSGDVVLTARDEA 248

Query: 437  RGQAAVQQLQAEGLSPRFHQLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPT 616
            RG+AAVQQLQAEGLSPRFH LDIDDL+SI+ALRDFL KEYGGLNVLVNNAGIAFK  DPT
Sbjct: 249  RGRAAVQQLQAEGLSPRFHLLDIDDLQSIRALRDFLRKEYGGLNVLVNNAGIAFKPDDPT 308

Query: 617  PFHIQAEVTMKTNFLGTRNVCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSE 796
            PF IQAE+T+KTNF  TRNVC ELLP+IKP GRVVN+SS E  +AL NCS +LQ+KF+ E
Sbjct: 309  PFDIQAEITLKTNFFATRNVCNELLPIIKPHGRVVNISSLEGSKALENCSADLQKKFQCE 368

Query: 797  TITEEELVGLMNKFVEDTKNGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKI 976
            T+TEE+LV LM KFVEDT N VH++EGWP++AYGV+K+GVTVLSRI A +L E+R  D+I
Sbjct: 369  TLTEEDLVDLMKKFVEDTSNEVHEREGWPNSAYGVSKLGVTVLSRILAWRLDEKRKVDRI 428

Query: 977  LLNACCPGWVRTDMAGPKAPKSPEEGAETPVYLALLPSDAEGPHGQFVSEKKV*N 1141
            LLNACCPGWV+TDM GP  P++ EEGAETPVYLALLP DA  PHGQ V +K V N
Sbjct: 429  LLNACCPGWVKTDMGGPYGPRTVEEGAETPVYLALLPPDATEPHGQLVHDKVVLN 483


>ref|XP_535589.2| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent
            carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase)
            (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin
            dehydrogenase [NADP+]) [Canis familiaris].
          Length = 292

 Score =  426 bits (1096), Expect = e-119
 Identities = 215/277 (77%), Positives = 234/277 (84%), Gaps = 3/277 (1%)
 Frame = +2

Query: 314  MSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH 493
            MSS  RVAVVTG NKG+G AI+RDLC+ FSGDV+LTARD ARG+AAVQQLQ++GLSPRFH
Sbjct: 1    MSSAPRVAVVTGANKGLGFAIMRDLCRNFSGDVVLTARDEARGRAAVQQLQSKGLSPRFH 60

Query: 494  QLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRN 673
             LDIDDL+SI  LRDFL KEY GL+VLVNNAGI F T DPTP  IQAEVT+KTNF GTRN
Sbjct: 61   LLDIDDLQSICTLRDFLCKEYRGLDVLVNNAGINFDTGDPTPLPIQAEVTLKTNFFGTRN 120

Query: 674  VCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTK 853
            VC ELLPL+KPQGRVVNVSS      L  CSPELQQKF SE ITEEEL  LMNKFVED K
Sbjct: 121  VCRELLPLMKPQGRVVNVSSVMGFVTLKQCSPELQQKFTSEAITEEELGMLMNKFVEDVK 180

Query: 854  NGVHKKEGWPS---TAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAG 1024
            NGVHKKEGWP      YG++K+G+T+LSRI+ARKLSEQR GDKI LNACCPGW+RTDM G
Sbjct: 181  NGVHKKEGWPDMKLVTYGISKMGITILSRIHARKLSEQRRGDKIFLNACCPGWLRTDMGG 240

Query: 1025 PKAPKSPEEGAETPVYLALLPSDAEGPHGQFVSEKKV 1135
            PK  KSPEEGAETPVYLALLPSDAEGPHG+FV EKKV
Sbjct: 241  PKGIKSPEEGAETPVYLALLPSDAEGPHGEFVMEKKV 277


>ref|XP_533000.2| PREDICTED: similar to Retinol dehydrogenase 12 [Canis familiaris].
          Length = 596

 Score = 69.3 bits (168), Expect = 8e-12
 Identities = 50/141 (35%), Positives = 82/141 (58%), Gaps = 6/141 (4%)
 Frame = +2

Query: 329 RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQ--AEGLSPRFHQLD 502
           + AVVTG N GIG A+ ++L ++    V+L  R+  RGQ A+ ++Q  ++G      Q+D
Sbjct: 316 KTAVVTGANSGIGKAVCQELARR-GARVILACRNWERGQKALAEIQVASKGTCLLLGQVD 374

Query: 503 IDDLRSIQALRDFLLKEYGGLNVLVNNAGIAF--KTVDPTPFHIQAEVTMKTNFLGTRNV 676
           +  + SI++   +LL+EY  +++LVNNA I+   KT+ P       ++T  TN++G   +
Sbjct: 375 LSSMASIRSFARWLLQEYPEIHLLVNNAAISGFPKTLTPEGL----DLTFATNYVGPFLL 430

Query: 677 CTELLPLIKPQG--RVVNVSS 733
              L   ++  G  RVVNVSS
Sbjct: 431 TNLLQGALQRAGSARVVNVSS 451


>ref|XP_540096.2| PREDICTED: similar to retinol dehydrogenase 14 (all-trans and 9-cis)
            isoform 1 [Canis familiaris].
          Length = 336

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 88/303 (29%), Positives = 130/303 (42%), Gaps = 35/303 (11%)
 Frame = +2

Query: 329  RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQL-----QAEGLSPR-- 487
            +  ++TG N G+G A    L +     V++  RD AR + A  QL     QA G  P   
Sbjct: 44   KTVLITGANSGLGRATAAALLR-LGARVIMGCRDRARAEEAAGQLRRELRQAGGREPGSD 102

Query: 488  --------FHQLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGI----AFKTVDPTPFHIQ 631
                      +LD+  LRS++A    +L+E   L+VL+NNAGI      KT D   F +Q
Sbjct: 103  VGAAGELVVRELDLASLRSVRAFCQEVLQEEPRLDVLINNAGIFQCPYMKTED--GFEMQ 160

Query: 632  AEVTMKTNFLGTRNVCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEE 811
              V    +FL T N+   LL    P  R+V VSS               + +K   I  E
Sbjct: 161  FGVNHLGHFLLT-NLLLGLLKNSAP-SRIVVVSS---------------KLYKYGDINFE 203

Query: 812  ELVGLMNKFVEDTKNGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNAC 991
            +L         +++   +K     S  Y  +K+   + +R  AR+L     G  + +N  
Sbjct: 204  DL---------NSEQSYNK-----SFCYSRSKLANILFTRELARRLE----GTNVTVNVL 245

Query: 992  CPGWVRTDMAGP-KAP---------------KSPEEGAETPVYLALLPSDAEGPHGQFVS 1123
             PG VRT++      P               K+P EGA+T VYLA  P + EG  G++  
Sbjct: 246  HPGIVRTNLGRHIHIPLLVRPLFNLVSWAFFKTPVEGAQTSVYLASSP-EVEGVSGKYFG 304

Query: 1124 EKK 1132
            + K
Sbjct: 305  DCK 307


>ref|XP_854354.1| PREDICTED: similar to Retinol dehydrogenase 11 (Retinal reductase
           1) (RalR1) (Prostate short-chain dehydrogenase/reductase
           1) (Androgen-regulated short-chain
           dehydrogenase/reductase 1) (HCV core-binding protein
           HCBP12) [Canis familiaris].
          Length = 337

 Score = 64.7 bits (156), Expect = 2e-10
 Identities = 51/143 (35%), Positives = 73/143 (51%), Gaps = 8/143 (5%)
 Frame = +2

Query: 329 RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRF--HQLD 502
           +VAVVTG N GIG    ++L Q+    V L  RDV +G+   +++Q    + +    +LD
Sbjct: 61  KVAVVTGANTGIGKETAKELAQR-GARVYLACRDVLKGELVAREIQTMTGNKQVLVRKLD 119

Query: 503 IDDLRSIQALRDFLLKEYGGLNVLVNNAGIAF----KTVDPTPFHIQAEVTMKTNFLGTR 670
           + D +SI+A     L E   L++L+NNAG+      KTVD    H      M  N LG  
Sbjct: 120 LADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYTKTVDGFEMH------MGVNHLGHF 173

Query: 671 NVCTELLPLIKPQ--GRVVNVSS 733
            +   LL  +K     R+VNVSS
Sbjct: 174 LLTHLLLEKLKESAPSRIVNVSS 196


>ref|XP_548293.2| PREDICTED: similar to retinol dehydrogenase 11 (predicted) [Canis
            familiaris].
          Length = 377

 Score = 63.9 bits (154), Expect = 3e-10
 Identities = 77/286 (26%), Positives = 118/286 (41%), Gaps = 19/286 (6%)
 Frame = +2

Query: 281  PCRGTAAPLPTMSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQ 460
            PC G A      S   R AVVTG N GIG     +L ++    V+L  R   RG+AA   
Sbjct: 27   PCGGIA------SLRGRTAVVTGANSGIGKMTALELARR-GARVVLACRSRERGEAAAFD 79

Query: 461  LQAEGLSPR--FHQLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQA 634
            L+ E  +    F  LD+  L S++A     L     L++L++NAGI+       PF++  
Sbjct: 80   LRQESGNNEVIFMALDLASLASVRAFATAFLSSEPRLDILIHNAGISSCGRTHKPFNL-- 137

Query: 635  EVTMKTNFLGTRNVCTELLPLIK--PQGRVVNVSSTESVRALNNCSPELQQKFKSETITE 808
               ++ N +G   +   LLP +K     RVV VSS    R   +            T  +
Sbjct: 138  --LLRVNHIGPFLLTHLLLPRLKTCAPSRVVVVSSAAHRRGRLDF-----------TRLD 184

Query: 809  EELVGLMNKFVEDTKNGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNA 988
              +VG   +                  AY  +K+     + ++AR+L+ Q  G  +   A
Sbjct: 185  RPVVGWQQEL----------------RAYADSKLA----NVLFARELATQLEGTGVTCYA 224

Query: 989  CCPGWVRTDMAGPKAP---------------KSPEEGAETPVYLAL 1081
              PG V +++     P               ++P  GA+TP+Y AL
Sbjct: 225  AHPGPVNSELFLRHVPGWLCPLLRPLAWLMLRAPRGGAQTPLYCAL 270


>ref|XP_547866.2| PREDICTED: similar to retinol dehydrogenase 12 (all-trans and
           9-cis) [Canis familiaris].
          Length = 303

 Score = 63.5 bits (153), Expect = 4e-10
 Identities = 47/143 (32%), Positives = 75/143 (52%), Gaps = 8/143 (5%)
 Frame = +2

Query: 329 RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRF--HQLD 502
           +V V+TG N GIG    R+L ++    V +  RDV +G++A  +++A+  + +    +LD
Sbjct: 27  KVVVITGANTGIGKETARELARR-GARVYIACRDVLKGESAASEIRADTKNSQVLVRKLD 85

Query: 503 IDDLRSIQALRDFLLKEYGGLNVLVNNAGIAF----KTVDPTPFHIQAEVTMKTNFLGTR 670
           + D +SI+A  +  L E   L++L+NNAG+      KT D    H      +  N LG  
Sbjct: 86  LSDTKSIRAFAEGFLAEEKQLHILINNAGVMMCPYSKTADGFETH------LGVNHLGHF 139

Query: 671 NVCTELLPLIKPQ--GRVVNVSS 733
            +   LL  +K     RVVN+SS
Sbjct: 140 LLTHLLLERLKESTPARVVNLSS 162


>ref|XP_854127.1| PREDICTED: similar to Retinol dehydrogenase 13 [Canis familiaris].
          Length = 334

 Score = 63.2 bits (152), Expect = 6e-10
 Identities = 75/287 (26%), Positives = 130/287 (45%), Gaps = 24/287 (8%)
 Frame = +2

Query: 329  RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH--QLD 502
            +  +VTG N GIG     +L ++  G+++L  RD+ + +AA ++++ E L+ R     LD
Sbjct: 39   KTVIVTGANTGIGKQTALELARR-GGNIILACRDMEKCEAAAKEIRGETLNHRVSAWHLD 97

Query: 503  IDDLRSIQALRDFLLKEYGGLNVLVNNAGIA----FKTVDPTPFHIQAEVTMKTNFLGTR 670
            +  L+SI+     +++E   +++LVNNA +     + T D   F +Q  V    +FL T 
Sbjct: 98   LASLKSIREFAAKIIEEEEQVHILVNNAAVMRCPHWTTKD--GFEMQFGVNHLGHFLLT- 154

Query: 671  NVCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDT 850
            N+  + L    P  R++N+SS   V               +  I  ++L     K+  DT
Sbjct: 155  NLLLDKLKASAP-SRIINLSSLAHV---------------AGHIDFDDLNWEKRKY--DT 196

Query: 851  KNGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMA--- 1021
            K            AY  +K+ V     ++ ++LS +  G  + +NA  PG  RT++    
Sbjct: 197  K-----------AAYCQSKLAVI----LFTKELSRRLQGTGVTVNALHPGVARTELGRHT 241

Query: 1022 ------------GP---KAPKSPEEGAETPVYLALLPSDAEGPHGQF 1117
                        GP      KSP+  A+   YLA +  + EG  G++
Sbjct: 242  GMHSSAFSSFTLGPIFWLLVKSPQLAAQPSTYLA-VAEELEGVSGKY 287


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 53,843,977
Number of extensions: 1510367
Number of successful extensions: 6036
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 6005
Number of HSP's successfully gapped: 13
Length of query: 442
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 336
Effective length of database: 15,340,888
Effective search space: 5154538368
Effective search space used: 5154538368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001812
         (1328 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001748.1| carbonyl reductase [NADPH] 1 [Homo sapiens].         493   e-139
Alignment   gi|NP_001227.1| carbonyl reductase [NADPH] 3 [Homo sapiens].         397   e-110
Alignment   gi|NP_065956.1| retinol dehydrogenase 14 [Homo sapiens].              65   2e-10
Alignment   gi|NP_057110.3| retinol dehydrogenase 11 [Homo sapiens].              63   7e-10
Alignment   gi|NP_689656.2| retinol dehydrogenase 12 [Homo sapiens].              62   9e-10
Alignment   gi|NP_001139443.1| retinol dehydrogenase 13 isoform 1 [Homo sap...    61   2e-09
Alignment   gi|NP_653284.2| dehydrogenase/reductase SDR family member 13 pr...    60   6e-09
Alignment   gi|NP_057330.2| 17-beta-hydroxysteroid dehydrogenase 14 [Homo s...    54   2e-07
Alignment   gi|NP_060911.2| peroxisomal trans-2-enoyl-CoA reductase [Homo s...    52   1e-06
Alignment   gi|NP_057457.1| WW domain-containing oxidoreductase isoform 1 [...    50   6e-06

>ref|NP_001748.1| carbonyl reductase [NADPH] 1 [Homo sapiens].
          Length = 277

 Score =  493 bits (1268), Expect = e-139
 Identities = 246/274 (89%), Positives = 259/274 (94%)
 Frame = +2

Query: 314  MSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH 493
            MSS I VA+VTGGNKGIGLAIVRDLC+ FSGDV+LTARDV RGQAAVQQLQAEGLSPRFH
Sbjct: 1    MSSGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFH 60

Query: 494  QLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRN 673
            QLDIDDL+SI+ALRDFL KEYGGL+VLVNNAGIAFK  DPTPFHIQAEVTMKTNF GTR+
Sbjct: 61   QLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRD 120

Query: 674  VCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTK 853
            VCTELLPLIKPQGRVVNVSS  SVRAL +CSPELQQKF+SETITEEELVGLMNKFVEDTK
Sbjct: 121  VCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTK 180

Query: 854  NGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAGPKA 1033
             GVH+KEGWPS+AYGVTKIGVTVLSRI+ARKLSEQR GDKILLNACCPGWVRTDMAGPKA
Sbjct: 181  KGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGPKA 240

Query: 1034 PKSPEEGAETPVYLALLPSDAEGPHGQFVSEKKV 1135
             KSPEEGAETPVYLALLP DAEGPHGQFVSEK+V
Sbjct: 241  TKSPEEGAETPVYLALLPPDAEGPHGQFVSEKRV 274


>ref|NP_001227.1| carbonyl reductase [NADPH] 3 [Homo sapiens].
          Length = 277

 Score =  397 bits (1020), Expect = e-110
 Identities = 196/276 (71%), Positives = 234/276 (84%)
 Frame = +2

Query: 314  MSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH 493
            MSS  RVA+VTG N+GIGLAI R+LC+QFSGDV+LTARDVARGQAAVQQLQAEGLSPRFH
Sbjct: 1    MSSCSRVALVTGANRGIGLAIARELCRQFSGDVVLTARDVARGQAAVQQLQAEGLSPRFH 60

Query: 494  QLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRN 673
            QLDIDDL+SI+ALRDFL KEYGGLNVLVNNA +AFK+ DP PF I+AE+T+KTNF  TRN
Sbjct: 61   QLDIDDLQSIRALRDFLRKEYGGLNVLVNNAAVAFKSDDPMPFDIKAEMTLKTNFFATRN 120

Query: 674  VCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTK 853
            +C ELLP++KP GRVVN+SS + +RA  NCS +LQ++F SET+TE +LV LM KFVEDTK
Sbjct: 121  MCNELLPIMKPHGRVVNISSLQCLRAFENCSEDLQERFHSETLTEGDLVDLMKKFVEDTK 180

Query: 854  NGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAGPKA 1033
            N VH++EGWP++ YGV+K+GVTVLSRI AR+L E+R  D+IL+NACCPG V+TDM G  +
Sbjct: 181  NEVHEREGWPNSPYGVSKLGVTVLSRILARRLDEKRKADRILVNACCPGPVKTDMDGKDS 240

Query: 1034 PKSPEEGAETPVYLALLPSDAEGPHGQFVSEKKV*N 1141
             ++ EEGAETPVYLALLP DA  P GQ V +K V N
Sbjct: 241  IRTVEEGAETPVYLALLPPDATEPQGQLVHDKVVQN 276


>ref|NP_065956.1| retinol dehydrogenase 14 [Homo sapiens].
          Length = 336

 Score = 64.7 bits (156), Expect = 2e-10
 Identities = 85/303 (28%), Positives = 131/303 (43%), Gaps = 35/303 (11%)
 Frame = +2

Query: 329  RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAE-------GLSPR 487
            +  ++TG N G+G A   +L +     V++  RD AR + A  QL+ E       G  P 
Sbjct: 44   KTVLITGANSGLGRATAAELLR-LGARVIMGCRDRARAEEAAGQLRRELRQAAECGPEPG 102

Query: 488  F--------HQLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGI----AFKTVDPTPFHIQ 631
                      +LD+  LRS++A    +L+E   L+VL+NNAGI      KT D   F +Q
Sbjct: 103  VSGVGELIVRELDLASLRSVRAFCQEMLQEEPRLDVLINNAGIFQCPYMKTED--GFEMQ 160

Query: 632  AEVTMKTNFLGTRNVCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEE 811
              V    +FL T N+   LL    P  R+V VSS               + +K   I  +
Sbjct: 161  FGVNHLGHFLLT-NLLLGLLKSSAP-SRIVVVSS---------------KLYKYGDINFD 203

Query: 812  ELVGLMNKFVEDTKNGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNAC 991
            +L         +++   +K     S  Y  +K+   + +R  AR+L     G  + +N  
Sbjct: 204  DL---------NSEQSYNK-----SFCYSRSKLANILFTRELARRLE----GTNVTVNVL 245

Query: 992  CPGWVRTDMAGP-KAP---------------KSPEEGAETPVYLALLPSDAEGPHGQFVS 1123
             PG VRT++      P               K+P EGA+T +YLA  P + EG  G++  
Sbjct: 246  HPGIVRTNLGRHIHIPLLVKPLFNLVSWAFFKTPVEGAQTSIYLASSP-EVEGVSGRYFG 304

Query: 1124 EKK 1132
            + K
Sbjct: 305  DCK 307


>ref|NP_057110.3| retinol dehydrogenase 11 [Homo sapiens].
          Length = 318

 Score = 62.8 bits (151), Expect = 7e-10
 Identities = 50/143 (34%), Positives = 71/143 (49%), Gaps = 8/143 (5%)
 Frame = +2

Query: 329 RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRF--HQLD 502
           +V VVTG N GIG    ++L Q+    V L  RDV +G+   +++Q    + +    +LD
Sbjct: 42  KVVVVTGANTGIGKETAKELAQR-GARVYLACRDVEKGELVAKEIQTTTGNQQVLVRKLD 100

Query: 503 IDDLRSIQALRDFLLKEYGGLNVLVNNAGIAF----KTVDPTPFHIQAEVTMKTNFLGTR 670
           + D +SI+A     L E   L+VL+NNAG+      KT D    HI        N LG  
Sbjct: 101 LSDTKSIRAFAKGFLAEEKHLHVLINNAGVMMCPYSKTADGFEMHI------GVNHLGHF 154

Query: 671 NVCTELLPLIKPQ--GRVVNVSS 733
            +   LL  +K     R+VNVSS
Sbjct: 155 LLTHLLLEKLKESAPSRIVNVSS 177


>ref|NP_689656.2| retinol dehydrogenase 12 [Homo sapiens].
          Length = 316

 Score = 62.4 bits (150), Expect = 9e-10
 Identities = 47/143 (32%), Positives = 73/143 (51%), Gaps = 8/143 (5%)
 Frame = +2

Query: 329 RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRF--HQLD 502
           +V V+TG N GIG    R+L  +    V +  RDV +G++A  +++ +  + +    +LD
Sbjct: 40  KVVVITGANTGIGKETARELASR-GARVYIACRDVLKGESAASEIRVDTKNSQVLVRKLD 98

Query: 503 IDDLRSIQALRDFLLKEYGGLNVLVNNAGIAF----KTVDPTPFHIQAEVTMKTNFLGTR 670
           + D +SI+A  +  L E   L++L+NNAG+      KT D    H      +  N LG  
Sbjct: 99  LSDTKSIRAFAEGFLAEEKQLHILINNAGVMMCPYSKTADGFETH------LGVNHLGHF 152

Query: 671 NVCTELLPLIK--PQGRVVNVSS 733
            +   LL  +K     RVVNVSS
Sbjct: 153 LLTYLLLERLKVSAPARVVNVSS 175


>ref|NP_001139443.1| retinol dehydrogenase 13 isoform 1 [Homo sapiens].
          Length = 331

 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 73/293 (24%), Positives = 131/293 (44%), Gaps = 26/293 (8%)
 Frame = +2

Query: 329  RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH--QLD 502
            +  +VTG N GIG     +L ++  G+++L  RD+ + +AA + ++ E L+   +   LD
Sbjct: 39   KTVIVTGANTGIGKQTALELARR-GGNIILACRDMEKCEAAAKDIRGETLNHHVNARHLD 97

Query: 503  IDDLRSIQALRDFLLKEYGGLNVLVNNAGIA----FKTVDPTPFHIQAEVTMKTNFLGTR 670
            +  L+SI+     +++E   +++L+NNAG+     + T D   F +Q  V    +FL T 
Sbjct: 98   LASLKSIREFAAKIIEEEERVDILINNAGVMRCPHWTTED--GFEMQFGVNHLGHFLLT- 154

Query: 671  NVCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDT 850
            N+  + L    P  R++N+SS   V               +  I  ++L     K+  +T
Sbjct: 155  NLLLDKLKASAP-SRIINLSSLAHV---------------AGHIDFDDLNWQTRKY--NT 196

Query: 851  KNGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMA--- 1021
            K            AY  +K+ +     ++ ++LS +  G  + +NA  PG  RT++    
Sbjct: 197  K-----------AAYCQSKLAIV----LFTKELSRRLQGSGVTVNALHPGVARTELGRHT 241

Query: 1022 ------------GP---KAPKSPEEGAETPVYLALLP--SDAEGPHGQFVSEK 1129
                        GP      KSPE  A+   YLA+    +D  G +   + +K
Sbjct: 242  GIHGSTFSSTTLGPIFWLLVKSPELAAQPSTYLAVAEELADVSGKYFDGLKQK 294


>ref|NP_653284.2| dehydrogenase/reductase SDR family member 13 precursor [Homo
            sapiens].
          Length = 377

 Score = 59.7 bits (143), Expect = 6e-09
 Identities = 71/272 (26%), Positives = 110/272 (40%), Gaps = 21/272 (7%)
 Frame = +2

Query: 329  RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPR--FHQLD 502
            R AVVTG N GIG     +L ++    V+L  R   RG+AA   L+ E  +    F  LD
Sbjct: 37   RTAVVTGANSGIGKMTALELARR-GARVVLACRSQERGEAAAFDLRQESGNNEVIFMALD 95

Query: 503  IDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRNVCT 682
            +  L S++A     L     L++L++NAGI+        F++     ++ N +G   +  
Sbjct: 96   LASLASVRAFATAFLSSEPRLDILIHNAGISSCGRTREAFNL----LLRVNHIGPFLLTH 151

Query: 683  ELLPLIK--PQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTKN 856
             LLP +K     RVV V+S        +C   L  K     +                  
Sbjct: 152  LLLPCLKACAPSRVVVVASAA------HCRGRLDFKRLDRPVV----------------- 188

Query: 857  GVHKKEGWPS--TAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAGPK 1030
                  GW     AY  TK+     + ++AR+L+ Q     +   A  PG V +++    
Sbjct: 189  ------GWRQELRAYADTKLA----NVLFARELANQLEATGVTCYAAHPGPVNSELFLRH 238

Query: 1031 AP---------------KSPEEGAETPVYLAL 1081
             P               ++P  GA+TP+Y AL
Sbjct: 239  VPGWLRPLLRPLAWLVLRAPRGGAQTPLYCAL 270


>ref|NP_057330.2| 17-beta-hydroxysteroid dehydrogenase 14 [Homo sapiens].
          Length = 270

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 44/137 (32%), Positives = 65/137 (47%), Gaps = 2/137 (1%)
 Frame = +2

Query: 329 RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFHQLDID 508
           +V VVTGG +GIG  IVR         V++  +D + G+A  Q+L        F   D+ 
Sbjct: 10  KVVVVTGGGRGIGAGIVRAFVNS-GARVVICDKDESGGRALEQELP----GAVFILCDVT 64

Query: 509 DLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQA-EVTMKTNFLGTRNVCTE 685
               ++ L    ++ +G L+ +VNNAG       P     Q     ++ N LGT  +   
Sbjct: 65  QEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKL 124

Query: 686 LLP-LIKPQGRVVNVSS 733
            LP L K QG V+N+SS
Sbjct: 125 ALPYLRKSQGNVINISS 141


>ref|NP_060911.2| peroxisomal trans-2-enoyl-CoA reductase [Homo sapiens].
          Length = 303

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 45/144 (31%), Positives = 74/144 (51%), Gaps = 11/144 (7%)
 Frame = +2

Query: 329 RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH----- 493
           +VA+VTGG  GIG AIV++L  +   +V++ +R + R ++A  +LQA  L P        
Sbjct: 19  QVAIVTGGATGIGKAIVKELL-ELGSNVVIASRKLERLKSAADELQA-NLPPTKQARVIP 76

Query: 494 -QLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAE---VTMKTNFL 661
            Q +I +   +  L    L  +G +N LVNN G  F  + P   HI ++     ++TN  
Sbjct: 77  IQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQF--LSPAE-HISSKGWHAVLETNLT 133

Query: 662 GTRNVCTELLP--LIKPQGRVVNV 727
           GT  +C  +    + +  G +VN+
Sbjct: 134 GTFYMCKAVYSSWMKEHGGSIVNI 157


>ref|NP_057457.1| WW domain-containing oxidoreductase isoform 1 [Homo sapiens].
          Length = 414

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 76/276 (27%), Positives = 111/276 (40%), Gaps = 13/276 (4%)
 Frame = +2

Query: 329  RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH--QLD 502
            +V VVTG N GIG    +         V+L  R++AR   AV ++  E    +     LD
Sbjct: 125  KVVVVTGANSGIGFETAKSFALH-GAHVILACRNMARASEAVSRILEEWHKAKVEAMTLD 183

Query: 503  IDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRNVCT 682
            +  LRS+Q   +    +   L+VLV NA         T   +  E T + N LG   +  
Sbjct: 184  LALLRSVQHFAEAFKAKNVPLHVLVCNAATFALPWSLTKDGL--ETTFQVNHLGHFYLVQ 241

Query: 683  ELLPLI--KPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTKN 856
             L  ++      RV+ VSS ES R                T   + L  L    +  TKN
Sbjct: 242  LLQDVLCRSAPARVIVVSS-ESHRF---------------TDINDSLGKLDFSRLSPTKN 285

Query: 857  GVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQ-------RAGDKILLNACCPGWVRTD 1015
                 + W   AY  +K+   + S    R+LS +         G+ +  N     WV T 
Sbjct: 286  -----DYWAMLAYNRSKLCNILFSNELHRRLSPRGVTSNAVHPGNMMYSNIHRSWWVYTL 340

Query: 1016 MAGPKAP--KSPEEGAETPVYLALLPSDAEGPHGQF 1117
            +     P  KS ++GA T VY A +P + EG  G +
Sbjct: 341  LFTLARPFTKSMQQGAATTVYCAAVP-ELEGLGGMY 375


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 52,724,071
Number of extensions: 1479097
Number of successful extensions: 5930
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 5907
Number of HSP's successfully gapped: 10
Length of query: 442
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 336
Effective length of database: 14,802,980
Effective search space: 4973801280
Effective search space used: 4973801280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001812
         (1328 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_031646.2| carbonyl reductase [NADPH] 1 [Mus musculus].         456   e-128
Alignment   gi|XP_359206.3| PREDICTED: carbonyl reductase [NADPH] 1-like [M...   438   e-123
Alignment   gi|NP_766635.1| carbonyl reductase 3 [Mus musculus].                 407   e-113
Alignment   gi|XP_003086079.1| PREDICTED: carbonyl reductase [NADPH] 1-like...   352   4e-97
Alignment   gi|XP_003085160.1| PREDICTED: carbonyl reductase [NADPH] 1-like...   141   1e-33
Alignment   gi|NP_076186.1| retinol dehydrogenase 14 [Mus musculus].              70   3e-12
Alignment   gi|NP_780581.1| retinol dehydrogenase 13 [Mus musculus].              69   6e-12
Alignment   gi|NP_067532.2| retinol dehydrogenase 11 [Mus musculus].              67   4e-11
Alignment   gi|NP_084293.1| retinol dehydrogenase 12 [Mus musculus].              65   9e-11
Alignment   gi|NP_001028498.2| dehydrogenase/reductase SDR family member on...    64   3e-10

>ref|NP_031646.2| carbonyl reductase [NADPH] 1 [Mus musculus].
          Length = 277

 Score =  456 bits (1174), Expect = e-128
 Identities = 229/274 (83%), Positives = 247/274 (90%)
 Frame = +2

Query: 314  MSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH 493
            MSS+  VA+VTG NKGIG AI RDLC++FSGDV+L ARD  RGQ AVQ+LQAEGLSPRFH
Sbjct: 1    MSSSRPVALVTGANKGIGFAITRDLCRKFSGDVVLAARDEERGQTAVQKLQAEGLSPRFH 60

Query: 494  QLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRN 673
            QLDID+ +SI+ALRDFLLKEYGGL+VLVNNAGIAFK  D TPFHIQAEVTMKTNF GTR+
Sbjct: 61   QLDIDNPQSIRALRDFLLKEYGGLDVLVNNAGIAFKVNDDTPFHIQAEVTMKTNFFGTRD 120

Query: 674  VCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTK 853
            VC ELLPLIKPQGRVVNVSS  S+RAL NC  ELQQKF+SETITEEELVGLMNKFVEDTK
Sbjct: 121  VCKELLPLIKPQGRVVNVSSMVSLRALKNCRLELQQKFRSETITEEELVGLMNKFVEDTK 180

Query: 854  NGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAGPKA 1033
             GVH +EGWP++AYGVTKIGVTVLSRI ARKL+EQR GDKILLNACCPGWVRTDMAGPKA
Sbjct: 181  KGVHAEEGWPNSAYGVTKIGVTVLSRILARKLNEQRRGDKILLNACCPGWVRTDMAGPKA 240

Query: 1034 PKSPEEGAETPVYLALLPSDAEGPHGQFVSEKKV 1135
             KSPEEGAETPVYLALLP DAEGPHGQFV +KKV
Sbjct: 241  TKSPEEGAETPVYLALLPPDAEGPHGQFVQDKKV 274


>ref|XP_359206.3| PREDICTED: carbonyl reductase [NADPH] 1-like [Mus musculus].
          Length = 277

 Score =  438 bits (1126), Expect = e-123
 Identities = 221/274 (80%), Positives = 240/274 (87%)
 Frame = +2

Query: 314  MSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH 493
            M S  R+A+VTG NKGIG AI RDLCQQFSGDV+LTARD ARG AAVQ+LQAEGL PRFH
Sbjct: 1    MPSCSRIALVTGANKGIGFAITRDLCQQFSGDVVLTARDEARGLAAVQKLQAEGLIPRFH 60

Query: 494  QLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRN 673
            QLDI+D +SI ALR+FLLKEYGGL+VLVNNAGIA+K  D T FHI  E  MKTNF GT+ 
Sbjct: 61   QLDINDPQSIHALRNFLLKEYGGLDVLVNNAGIAYKGTDLTHFHILREAAMKTNFFGTQA 120

Query: 674  VCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTK 853
            VCTELLPLIK QGRVVN+SS  S+ AL NCS ELQQKF+SETITEEELVGLMNKFVEDTK
Sbjct: 121  VCTELLPLIKTQGRVVNISSLISLEALKNCSLELQQKFRSETITEEELVGLMNKFVEDTK 180

Query: 854  NGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAGPKA 1033
             GVH KEGWP++AYGV+KIGVTVLSRI ARKL+EQR GDKILLNACCPGWVRTDMAGP+A
Sbjct: 181  KGVHAKEGWPNSAYGVSKIGVTVLSRILARKLNEQRRGDKILLNACCPGWVRTDMAGPQA 240

Query: 1034 PKSPEEGAETPVYLALLPSDAEGPHGQFVSEKKV 1135
             KSPEEGAETPVYLALLP DAEGPHGQFV +KKV
Sbjct: 241  TKSPEEGAETPVYLALLPPDAEGPHGQFVQDKKV 274


>ref|NP_766635.1| carbonyl reductase 3 [Mus musculus].
          Length = 277

 Score =  407 bits (1045), Expect = e-113
 Identities = 199/274 (72%), Positives = 234/274 (85%)
 Frame = +2

Query: 314  MSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH 493
            MSS  RVA+VTG NKGIG AI RDLC++FSGDV+LTARD ARG+AAVQQLQAEGLSPRFH
Sbjct: 1    MSSCSRVALVTGANKGIGFAITRDLCRKFSGDVVLTARDEARGRAAVQQLQAEGLSPRFH 60

Query: 494  QLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRN 673
            QLDIDD +SI+ALRDFL KEYGGLNVLVNNAGIAF+  DPTPF IQAEVT+KTNF  TRN
Sbjct: 61   QLDIDDPQSIRALRDFLRKEYGGLNVLVNNAGIAFRMDDPTPFDIQAEVTLKTNFFATRN 120

Query: 674  VCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTK 853
            VCTELLP++KP GRVVN+SS + ++AL NC  +LQ+KF+ +T+TE +LV LM KFVEDTK
Sbjct: 121  VCTELLPIMKPHGRVVNISSLQGLKALENCREDLQEKFRCDTLTEVDLVDLMKKFVEDTK 180

Query: 854  NGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAGPKA 1033
            N VH++EGWP +AYGV+K+GVTVL+RI AR+L E+R  D+ILLNACCPGWV+TDMA  + 
Sbjct: 181  NEVHEREGWPDSAYGVSKLGVTVLTRILARQLDEKRKADRILLNACCPGWVKTDMARDQG 240

Query: 1034 PKSPEEGAETPVYLALLPSDAEGPHGQFVSEKKV 1135
             ++ EEGAETPVYLALLP DA  PHGQ V +K V
Sbjct: 241  SRTVEEGAETPVYLALLPPDATEPHGQLVRDKVV 274


>ref|XP_003086079.1| PREDICTED: carbonyl reductase [NADPH] 1-like, partial [Mus musculus].
          Length = 218

 Score =  352 bits (903), Expect = 4e-97
 Identities = 174/214 (81%), Positives = 190/214 (88%)
 Frame = +2

Query: 494  QLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRN 673
            QLDIDD +SI ALRDFLLKEY GL+VLVNNAGIAFK  DPTPFHI+ EVTMKTNF GTR+
Sbjct: 2    QLDIDDPQSIHALRDFLLKEYKGLDVLVNNAGIAFKVDDPTPFHIKGEVTMKTNFFGTRD 61

Query: 674  VCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTK 853
            VC E+LPLIKPQGRVVNVSS  S+ AL +CSPELQQKF+SETITEEELVGLMNK+VED K
Sbjct: 62   VCKEMLPLIKPQGRVVNVSSMVSLSALKDCSPELQQKFRSETITEEELVGLMNKYVEDAK 121

Query: 854  NGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAGPKA 1033
             GV+ KE WP++AY V+KIGVTVLSRI ARKL+EQR GDKILLNACCPGWVRTDM GP+A
Sbjct: 122  KGVYVKEDWPNSAYEVSKIGVTVLSRILARKLNEQRRGDKILLNACCPGWVRTDMTGPQA 181

Query: 1034 PKSPEEGAETPVYLALLPSDAEGPHGQFVSEKKV 1135
             KSPEEGAETPVYLALLP DAEGPHGQFV +K V
Sbjct: 182  TKSPEEGAETPVYLALLPPDAEGPHGQFVQDKTV 215


>ref|XP_003085160.1| PREDICTED: carbonyl reductase [NADPH] 1-like [Mus musculus].
          Length = 149

 Score =  141 bits (355), Expect = 1e-33
 Identities = 73/93 (78%), Positives = 81/93 (87%)
 Frame = +2

Query: 314 MSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH 493
           M S  R+A+VTG NKGIG AI RDLC+QFSGDV+LTARD ARG AAVQ+LQAEGLSPRFH
Sbjct: 1   MPSCSRIALVTGANKGIGFAITRDLCRQFSGDVVLTARDEARGLAAVQKLQAEGLSPRFH 60

Query: 494 QLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGI 592
           QLDI+D + I AL DFLLKEYGGL+VLVNNAGI
Sbjct: 61  QLDINDPQRICALCDFLLKEYGGLDVLVNNAGI 93


>ref|NP_076186.1| retinol dehydrogenase 14 [Mus musculus].
          Length = 334

 Score = 70.5 bits (171), Expect = 3e-12
 Identities = 89/300 (29%), Positives = 132/300 (44%), Gaps = 32/300 (10%)
 Frame = +2

Query: 329  RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQL-----QAEGLSPR-- 487
            +  ++TG N G+G A   +L +     V++  RD AR + A  QL     QA G  P   
Sbjct: 45   KTVLITGANSGLGRATAAELLR-LGARVIMGCRDRARAEEAAGQLRQELCQAGGAGPDGT 103

Query: 488  -----FHQLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAF----KTVDPTPFHIQAEV 640
                   +LD+  LRS++A    LL+E   L+VL+NNAG+      KT D   F +Q  V
Sbjct: 104  DGQLVVKELDLASLRSVRAFCQELLQEEPRLDVLINNAGVFHCPYTKTED--GFEMQFGV 161

Query: 641  TMKTNFLGTRNVCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELV 820
                +FL T N+   LL    P  R+V VSS               + +K   I  E+L 
Sbjct: 162  NHLGHFLLT-NLLLGLLKSSAP-SRIVVVSS---------------KLYKYGEINFEDL- 203

Query: 821  GLMNKFVEDTKNGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPG 1000
                    +++   +K     S  Y  +K+   + +R  AR+L     G  + +N   PG
Sbjct: 204  --------NSEQSYNK-----SFCYSRSKLANILFTRELARRLE----GTNVTVNVLHPG 246

Query: 1001 WVRTD---------MAGPKAP-------KSPEEGAETPVYLALLPSDAEGPHGQFVSEKK 1132
             VRT+         +A P          K+P EGA+T +YLA  P D EG  G++  + K
Sbjct: 247  IVRTNLGRHIHIPLLARPLFNLVSWAFFKTPLEGAQTSIYLACSP-DVEGVSGRYFGDCK 305


>ref|NP_780581.1| retinol dehydrogenase 13 [Mus musculus].
          Length = 334

 Score = 69.3 bits (168), Expect = 6e-12
 Identities = 77/275 (28%), Positives = 125/275 (45%), Gaps = 24/275 (8%)
 Frame = +2

Query: 329  RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH--QLD 502
            +  +VTG N GIG     +L ++  G+V+L  RD+ + + A + ++ E L+PR    +LD
Sbjct: 39   KTVIVTGANTGIGKQTALELAKR-GGNVILACRDMEKCEVAAKDIRGETLNPRVRAERLD 97

Query: 503  IDDLRSIQALRDFLLKEYGGLNVLVNNAGIA----FKTVDPTPFHIQAEVTMKTNFLGTR 670
            +  L+SI+     ++KE   +++LVNNA +     + T D   F +Q  V    +FL T 
Sbjct: 98   LASLKSIREFARKVIKEEERVDILVNNAAVMRCPHWTTED--GFEMQFGVNYLGHFLLT- 154

Query: 671  NVCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDT 850
            N+  + L    P  R++N+SS   V               +  I  E+L   M K+  DT
Sbjct: 155  NLLLDKLKASAP-SRIINLSSLAHV---------------AGHIDFEDLNWQMKKY--DT 196

Query: 851  KNGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTD----- 1015
            K            AY  +K+ V     ++ ++LS +  G  + +NA  PG  RT+     
Sbjct: 197  K-----------AAYCQSKLAVV----LFTKELSHRLQGSGVTVNALHPGVARTELGRHT 241

Query: 1016 ----------MAGP---KAPKSPEEGAETPVYLAL 1081
                      M GP      KSP+  A+   YLA+
Sbjct: 242  GMHNSAFSGFMLGPFFWLLFKSPQLAAQPSTYLAV 276


>ref|NP_067532.2| retinol dehydrogenase 11 [Mus musculus].
          Length = 316

 Score = 66.6 bits (161), Expect = 4e-11
 Identities = 54/143 (37%), Positives = 75/143 (52%), Gaps = 8/143 (5%)
 Frame = +2

Query: 329 RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQA-EGLSPRF-HQLD 502
           +VA+VTG N GIG    +DL Q+    V L  RDV +G+ A +++QA  G S  F  +LD
Sbjct: 39  KVAIVTGANTGIGKETAKDLAQR-GARVYLACRDVDKGELAAREIQAVTGNSQVFVRKLD 97

Query: 503 IDDLRSIQALRDFLLKEYGGLNVLVNNAGIAF----KTVDPTPFHIQAEVTMKTNFLGTR 670
           + D +SI+A     L E   L++L+NNAG+      KT D    HI        N LG  
Sbjct: 98  LADTKSIRAFAKDFLAEEKHLHLLINNAGVMMCPYSKTADGFEMHI------GVNHLGHF 151

Query: 671 NVCTELLPLIKPQ--GRVVNVSS 733
            +   LL  +K     R+VN+SS
Sbjct: 152 LLTHLLLEKLKESAPSRIVNLSS 174


>ref|NP_084293.1| retinol dehydrogenase 12 [Mus musculus].
          Length = 316

 Score = 65.5 bits (158), Expect = 9e-11
 Identities = 75/288 (26%), Positives = 127/288 (44%), Gaps = 20/288 (6%)
 Frame = +2

Query: 329  RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRF--HQLD 502
            +V V+TG N GIG    R+L ++    V +  RDV +G++A  +++A+  + +    +LD
Sbjct: 40   KVVVITGANTGIGKETARELARR-GARVYIACRDVLKGESAASEIRADTKNSQVLVRKLD 98

Query: 503  IDDLRSIQALRDFLLKEYGGLNVLVNNAGIAF----KTVDPTPFHIQAEVTMKTNFLGTR 670
            + D +SI+A  +  L E   L++L+NNAG+      KT D    H         N LG  
Sbjct: 99   LSDTKSIRAFAERFLAEEKKLHILINNAGVMMCPYSKTTDGFETH------FGVNHLGHF 152

Query: 671  NVCTELLPLIKPQ--GRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVE 844
             +   LL  +K     RVVN+SS                           +  L+ K   
Sbjct: 153  LLTYLLLERLKESAPARVVNLSS---------------------------IAHLIGKIRF 185

Query: 845  DTKNGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAG 1024
                G  +K    + AYG +K+     + ++ R+L+++  G  +   A  PG V +++  
Sbjct: 186  HDLQG--QKRYCSAFAYGHSKLA----NLLFTRELAKRLQGTGVTAYAVHPGVVLSEITR 239

Query: 1025 PK----------AP--KSPEEGAETPVYLALLPSDAEGPHGQFVSEKK 1132
                        +P  KS  +GA+T ++ A L  D E   G++ S+ K
Sbjct: 240  NSYLLCLLWRLFSPFFKSTSQGAQTSLHCA-LAEDLEPLSGKYFSDCK 286


>ref|NP_001028498.2| dehydrogenase/reductase SDR family member on chromosome X homolog
            precursor [Mus musculus].
          Length = 335

 Score = 63.9 bits (154), Expect = 3e-10
 Identities = 81/291 (27%), Positives = 122/291 (41%), Gaps = 24/291 (8%)
 Frame = +2

Query: 329  RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFHQLDID 508
            RVA+VTG   GIG +  R L  +    V++   D   GQ  V  ++AE  S R H L + 
Sbjct: 44   RVAIVTGATAGIGRSTARQLA-RLGMCVVVAGNDEHCGQEVVSSIRAEMGSDRAHFLPL- 101

Query: 509  DLRSIQALRDFL--LKEYG-GLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRNVC 679
            DL S+ ++R F    +  G  L++LVNNAG+  +    T    +    +  NFLG   + 
Sbjct: 102  DLASLASVRGFARDFRALGLPLHLLVNNAGVMLEPRAETEDGFERH--LGVNFLGHFLLT 159

Query: 680  TELLPLIKPQG------RVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFV 841
              LLP ++  G      RVV V S                            VG ++   
Sbjct: 160  LLLLPALRASGAEGRGSRVVTVGSA------------------------THYVGTVD--- 192

Query: 842  EDTKNGVHKKEGW-PSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDM 1018
                  +H +  + P  AY  +K+ + + +    R L  +  GD +  N   PG V T++
Sbjct: 193  ---MADLHGRHAYSPYAAYAQSKLALALFALQLQRILDAR--GDPVTSNMADPGVVDTEL 247

Query: 1019 --------------AGPKAPKSPEEGAETPVYLALLPSDAEGPHGQFVSEK 1129
                           G    KSPEEGA T VY A  P + EG  G+++ ++
Sbjct: 248  YRHAGWVLRTVKRFLGWLVFKSPEEGAWTLVYAAAAP-ELEGVGGRYLRDE 297


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 44,615,514
Number of extensions: 1236343
Number of successful extensions: 4751
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 4722
Number of HSP's successfully gapped: 14
Length of query: 442
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 338
Effective length of database: 12,493,815
Effective search space: 4222909470
Effective search space used: 4222909470
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001812
         (1328 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003358992.1| PREDICTED: carbonyl reductase [NADPH] 1-like...   544   e-155
Alignment   gi|NP_999238.1| carbonyl reductase [NADPH] 1 [Sus scrofa].           483   e-137
Alignment   gi|XP_003132810.1| PREDICTED: carbonyl reductase [NADPH] 3-like...   407   e-114
Alignment   gi|XP_003361992.1| PREDICTED: carbonyl reductase [NADPH] 1-like...   299   2e-81
Alignment   gi|XP_003125388.1| PREDICTED: retinol dehydrogenase 14-like [Su...    66   5e-11
Alignment   gi|NP_001230331.1| retinol dehydrogenase 12 [Sus scrofa].             64   2e-10
Alignment   gi|XP_003125042.1| PREDICTED: retinol dehydrogenase 12-like [Su...    63   4e-10
Alignment   gi|XP_001928802.1| PREDICTED: retinol dehydrogenase 11 [Sus scr...    62   9e-10
Alignment   gi|XP_003126302.1| PREDICTED: 11-cis retinol dehydrogenase-like...    50   2e-06

>ref|XP_003358992.1| PREDICTED: carbonyl reductase [NADPH] 1-like [Sus scrofa].
          Length = 281

 Score =  544 bits (1401), Expect = e-155
 Identities = 273/274 (99%), Positives = 273/274 (99%)
 Frame = +2

Query: 314  MSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH 493
            MSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH
Sbjct: 1    MSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH 60

Query: 494  QLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRN 673
            QLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRN
Sbjct: 61   QLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRN 120

Query: 674  VCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTK 853
            VCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTK
Sbjct: 121  VCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTK 180

Query: 854  NGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAGPKA 1033
            NGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAGPKA
Sbjct: 181  NGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAGPKA 240

Query: 1034 PKSPEEGAETPVYLALLPSDAEGPHGQFVSEKKV 1135
            PKSPEEGAETP YLALLPSDAEGPHGQFVSEKKV
Sbjct: 241  PKSPEEGAETPAYLALLPSDAEGPHGQFVSEKKV 274


>ref|NP_999238.1| carbonyl reductase [NADPH] 1 [Sus scrofa].
          Length = 289

 Score =  483 bits (1244), Expect = e-137
 Identities = 240/274 (87%), Positives = 257/274 (93%)
 Frame = +2

Query: 314  MSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH 493
            MSSN RVA+VTG NKGIG AIVRDLC+QF+GDV+LTARDVARGQAAV+QLQAEGLSPRFH
Sbjct: 1    MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 60

Query: 494  QLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRN 673
            QLDI DL+SI+AL DFL KEYGGL+VLVNNA IAF+  +PTPFHIQAE+TMKTNF+GTRN
Sbjct: 61   QLDIIDLQSIRALCDFLRKEYGGLDVLVNNAAIAFQLDNPTPFHIQAELTMKTNFMGTRN 120

Query: 674  VCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTK 853
            VCTELLPLIKPQGRVVNVSSTE VRALN CSPELQQKFKSETITEEELVGLMNKFVEDTK
Sbjct: 121  VCTELLPLIKPQGRVVNVSSTEGVRALNECSPELQQKFKSETITEEELVGLMNKFVEDTK 180

Query: 854  NGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAGPKA 1033
            NGVH+KEGW  + YGVTKIGV+VLSRIYARKL EQRAGDKILLNACCPGWVRTDM GPKA
Sbjct: 181  NGVHRKEGWSDSTYGVTKIGVSVLSRIYARKLREQRAGDKILLNACCPGWVRTDMGGPKA 240

Query: 1034 PKSPEEGAETPVYLALLPSDAEGPHGQFVSEKKV 1135
            PKSPE GAETPVYLALLPSDAEGPHGQFV++KKV
Sbjct: 241  PKSPEVGAETPVYLALLPSDAEGPHGQFVTDKKV 274


>ref|XP_003132810.1| PREDICTED: carbonyl reductase [NADPH] 3-like [Sus scrofa].
          Length = 277

 Score =  407 bits (1046), Expect = e-114
 Identities = 201/276 (72%), Positives = 233/276 (84%)
 Frame = +2

Query: 314  MSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH 493
            MSS  RVA+VTG NKGIG AI RDLC+QFSGDV+LT+RD ARG+AAVQQLQAEGLSPRFH
Sbjct: 1    MSSYTRVALVTGANKGIGFAIARDLCRQFSGDVVLTSRDAARGRAAVQQLQAEGLSPRFH 60

Query: 494  QLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRN 673
            QLDIDDL+SI+ALRDFL KEYGGLNVLVNNAGIAFK  DPTPF IQAE+T+KTNF GTRN
Sbjct: 61   QLDIDDLQSIRALRDFLRKEYGGLNVLVNNAGIAFKIDDPTPFDIQAEMTLKTNFFGTRN 120

Query: 674  VCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTK 853
            VC ELLP+IKP GRVVN+SS    +AL NCS +LQ+KF+ E +TEE+LV LM KFVED K
Sbjct: 121  VCIELLPIIKPHGRVVNISSLLGSKALENCSEDLQEKFRCEALTEEDLVDLMKKFVEDAK 180

Query: 854  NGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAGPKA 1033
            N VH++EGWPS+AYGV+K+GVTVLSRI A++L E+R  D+ILLNACCPGWV+TDM G + 
Sbjct: 181  NEVHEREGWPSSAYGVSKLGVTVLSRILAQRLDEKRKADRILLNACCPGWVKTDMTGGQG 240

Query: 1034 PKSPEEGAETPVYLALLPSDAEGPHGQFVSEKKV*N 1141
             ++ EEGA TPVYLALLP DA  P GQ V +K + N
Sbjct: 241  FETVEEGAVTPVYLALLPPDATEPQGQLVRDKVIQN 276


>ref|XP_003361992.1| PREDICTED: carbonyl reductase [NADPH] 1-like, partial [Sus scrofa].
          Length = 154

 Score =  299 bits (766), Expect = 2e-81
 Identities = 151/152 (99%), Positives = 151/152 (99%)
 Frame = +2

Query: 347 GGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFHQLDIDDLRSIQ 526
           GGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQA VQQLQAEGLSPRFHQLDIDDLRSIQ
Sbjct: 1   GGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAGVQQLQAEGLSPRFHQLDIDDLRSIQ 60

Query: 527 ALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRNVCTELLPLIKP 706
           ALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRNVCTELLPLIKP
Sbjct: 61  ALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRNVCTELLPLIKP 120

Query: 707 QGRVVNVSSTESVRALNNCSPELQQKFKSETI 802
           QGRVVNVSSTESVRALNNCSPELQQKFKSETI
Sbjct: 121 QGRVVNVSSTESVRALNNCSPELQQKFKSETI 152


>ref|XP_003125388.1| PREDICTED: retinol dehydrogenase 14-like [Sus scrofa].
          Length = 336

 Score = 65.9 bits (159), Expect = 5e-11
 Identities = 87/303 (28%), Positives = 130/303 (42%), Gaps = 35/303 (11%)
 Frame = +2

Query: 329  RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQL-----QAEGLSPR-- 487
            +  ++TG N G+G A   +L +     V++  RD AR + A  QL     Q EG      
Sbjct: 44   KTVLITGANSGLGRATAAELLR-LGARVIMGCRDRARAEEAAGQLRRELRQTEGPEEGPN 102

Query: 488  --------FHQLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGI----AFKTVDPTPFHIQ 631
                      +LD+  LRS++A    +L+E   L+VL+NNAGI      KT D   F +Q
Sbjct: 103  SGGAGELVVRELDLASLRSVRAFCQEMLQEEPRLDVLINNAGIFQCPYMKTED--GFEMQ 160

Query: 632  AEVTMKTNFLGTRNVCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEE 811
              V    +FL T N+   LL    P  R+V VSS               + +K   I  E
Sbjct: 161  FAVNHLGHFLLT-NLLLGLLKSSAP-SRIVVVSS---------------KLYKYGDINFE 203

Query: 812  ELVGLMNKFVEDTKNGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNAC 991
            +L         +++   +K     S  Y  +K+   + +R  AR+L     G  + +N  
Sbjct: 204  DL---------NSEQSYNK-----SFCYSRSKLANILFTRELARRLE----GTNVTVNVL 245

Query: 992  CPGWVRTDMAGP-KAP---------------KSPEEGAETPVYLALLPSDAEGPHGQFVS 1123
             PG VRT++      P               K+P EGA+T VYLA  P + EG  G++  
Sbjct: 246  HPGIVRTNLGRHIHIPLLVRPLFNLVSWAFFKTPAEGAQTSVYLASSP-EVEGVSGKYFG 304

Query: 1124 EKK 1132
            + K
Sbjct: 305  DCK 307


>ref|NP_001230331.1| retinol dehydrogenase 12 [Sus scrofa].
          Length = 316

 Score = 63.5 bits (153), Expect = 2e-10
 Identities = 47/143 (32%), Positives = 75/143 (52%), Gaps = 8/143 (5%)
 Frame = +2

Query: 329 RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRF--HQLD 502
           +V V+TG N GIG    R+L ++    V +  RDV +G++A  +++A+  + +    +LD
Sbjct: 40  KVVVITGANTGIGKETARELARR-GARVYIACRDVLKGESAASEIRADTKNSQVLVRKLD 98

Query: 503 IDDLRSIQALRDFLLKEYGGLNVLVNNAGIAF----KTVDPTPFHIQAEVTMKTNFLGTR 670
           + D +SI+A  +  L E   L++L+NNAG+      KT D    H      +  N LG  
Sbjct: 99  LSDTKSIRAFAEGFLTEEKQLHILINNAGVMLCPYSKTADGFETH------LGVNHLGHF 152

Query: 671 NVCTELLPLIKPQ--GRVVNVSS 733
            +   LL  +K     RVVN+SS
Sbjct: 153 LLTHLLLEQLKASAPARVVNLSS 175


>ref|XP_003125042.1| PREDICTED: retinol dehydrogenase 12-like [Sus scrofa].
          Length = 181

 Score = 62.8 bits (151), Expect = 4e-10
 Identities = 45/133 (33%), Positives = 74/133 (55%), Gaps = 2/133 (1%)
 Frame = +2

Query: 329 RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRF--HQLD 502
           + AVVTG N GIG A+ ++L ++    V+L  R   RGQ A+ ++QA   S R     +D
Sbjct: 50  KTAVVTGANSGIGKAVSQELARR-GARVILACRSRERGQGALTEIQAATRSNRLLLGGVD 108

Query: 503 IDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRNVCT 682
           +  + SI++   +LL+E   +++LVNNAG++      TP  +  ++T  TN++G   + T
Sbjct: 109 LSSMASIRSFVQWLLRESPEIHLLVNNAGVSGFPRTRTPEGL--DLTFATNYIGP-FLLT 165

Query: 683 ELLPLIKPQGRVV 721
            LL     Q R +
Sbjct: 166 NLLQAYGNQARAM 178


>ref|XP_001928802.1| PREDICTED: retinol dehydrogenase 11 [Sus scrofa].
          Length = 316

 Score = 61.6 bits (148), Expect = 9e-10
 Identities = 50/143 (34%), Positives = 71/143 (49%), Gaps = 8/143 (5%)
 Frame = +2

Query: 329 RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQ--AEGLSPRFHQLD 502
           +VAVVTG N GIG    ++L ++    V L  RDV +G++  +++Q           +LD
Sbjct: 40  KVAVVTGANTGIGKETAKELAKR-GARVYLACRDVQKGESVAREIQNMTGNQQVLVRKLD 98

Query: 503 IDDLRSIQALRDFLLKEYGGLNVLVNNAGIAF----KTVDPTPFHIQAEVTMKTNFLGTR 670
           + D +SI+A     L E   L++L+NNAG+      KT D    H      M  N LG  
Sbjct: 99  LADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETH------MGVNHLGHF 152

Query: 671 NVCTELLPLIKPQ--GRVVNVSS 733
            +   LL  +K     RVVNVSS
Sbjct: 153 LLTHLLLEKLKESAPSRVVNVSS 175


>ref|XP_003126302.1| PREDICTED: 11-cis retinol dehydrogenase-like [Sus scrofa].
          Length = 318

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 51/156 (32%), Positives = 76/156 (48%), Gaps = 5/156 (3%)
 Frame = +2

Query: 305 LPTMSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSP 484
           LPT  + +    +TG + G G  +   L Q+  G  +L +     G   +Q++ +  L  
Sbjct: 24  LPTSDAFV---FITGCDSGFGRLLALRLDQR--GFRVLASCLTPSGAEDLQRVASSRLHT 78

Query: 485 RFHQLDIDDLRSIQALRDFLLKEYG--GLNVLVNNAGIAFKTVDPTPFHIQAEV--TMKT 652
               LD+ D +SIQ    ++    G  GL  LVNNAG+A   + PTP+  + +    +  
Sbjct: 79  TL--LDVTDPQSIQRAAKWVETHVGEAGLFGLVNNAGVA-GIIGPTPWQTREDFQQVLNV 135

Query: 653 NFLGTRNVCTELLPLIK-PQGRVVNVSSTESVRALN 757
           N LG   V   LLPL++  +GRVVNVSS     A N
Sbjct: 136 NTLGPIGVTLALLPLLRQARGRVVNVSSVLGRLAAN 171


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,653,350
Number of extensions: 984440
Number of successful extensions: 3947
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 3918
Number of HSP's successfully gapped: 9
Length of query: 442
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 340
Effective length of database: 8,804,438
Effective search space: 2993508920
Effective search space used: 2993508920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001812
         (1328 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr13                                                        1193   0.0  
gb|GL896154.1| Sus scrofa unplaced genomic scaffold chrU_scaffol...   650   0.0  
gb|GL896228.1| Sus scrofa unplaced genomic scaffold chrU_scaffold59   159   5e-36

>Sscrofa_Chr13 
||          Length = 218635234

 Score = 1193 bits (602), Expect = 0.0
 Identities = 602/602 (100%)
 Strand = Plus / Plus

                                                                             
Query: 1         tgattctctgctgtcaggcacgcggtcgctgggcaacggctcttcagcggacagctctcc 60
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209751971 tgattctctgctgtcaggcacgcggtcgctgggcaacggctcttcagcggacagctctcc 209752030

                                                                             
Query: 61        aaaccaaccccagcgccccttctctactttcccttcagccctagagcggcatcctggagc 120
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209752031 aaaccaaccccagcgccccttctctactttcccttcagccctagagcggcatcctggagc 209752090

                                                                             
Query: 121       caggccctcagcaggtggggcccgcgcctttgcactcagcccggaggctcgcggcgagag 180
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209752091 caggccctcagcaggtggggcccgcgcctttgcactcagcccggaggctcgcggcgagag 209752150

                                                                             
Query: 181       tgctgctagtgggcacccaacccattctgcgtcgcatcggctgccagcattgcgcagacc 240
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209752151 tgctgctagtgggcacccaacccattctgcgtcgcatcggctgccagcattgcgcagacc 209752210

                                                                             
Query: 241       ttcggcctcgcgtttgggagaaaccagacccatccgctgtccgtgcagaggcaccgctgc 300
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209752211 ttcggcctcgcgtttgggagaaaccagacccatccgctgtccgtgcagaggcaccgctgc 209752270

                                                                             
Query: 301       cccgctcccgaccatgtcgtccaacattcgcgtggcggtggtgaccggcggcaacaaggg 360
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209752271 cccgctcccgaccatgtcgtccaacattcgcgtggcggtggtgaccggcggcaacaaggg 209752330

                                                                             
Query: 361       catcggcctcgccatcgtgcgtgatctgtgccagcagttctcgggggatgtgatgcttac 420
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209752331 catcggcctcgccatcgtgcgtgatctgtgccagcagttctcgggggatgtgatgcttac 209752390

                                                                             
Query: 421       ggcgcgggacgtggcgagaggccaggcggcggtgcagcagctgcaggctgagggtctgag 480
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209752391 ggcgcgggacgtggcgagaggccaggcggcggtgcagcagctgcaggctgagggtctgag 209752450

                                                                             
Query: 481       cccgcgcttccaccagctggatatcgacgaccttcggagcatccaggccctgcgcgactt 540
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209752451 cccgcgcttccaccagctggatatcgacgaccttcggagcatccaggccctgcgcgactt 209752510

                                                                             
Query: 541       cctgctcaaggagtatgggggactcaacgtgctggtcaataacgcgggcatcgctttcaa 600
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209752511 cctgctcaaggagtatgggggactcaacgtgctggtcaataacgcgggcatcgctttcaa 209752570

                   
Query: 601       aa 602
                 ||
Sbjct: 209752571 aa 209752572



 Score =  912 bits (460), Expect = 0.0
 Identities = 505/520 (97%), Gaps = 2/520 (0%)
 Strand = Plus / Plus

                                                                             
Query: 709       aggcagagtggtgaatgtgtctagcactgagagtgtcagagctcttaacaactgcagtcc 768
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209757372 aggcagagtggtgaatgtgtctagcactgagagtgtcagagctcttaacaactgcagtcc 209757431

                                                                             
Query: 769       tgaactgcaacagaagttcaagagtgagaccatcacagaggaagagctggtggggctcat 828
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209757432 tgaactgcaacagaagttcaagagtgagaccatcacagaggaagagctggtggggctcat 209757491

                                                                             
Query: 829       gaacaagtttgtggaagacacaaagaacggagtccataagaaggaaggctggccaagtac 888
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209757492 gaacaagtttgtggaagacacaaagaacggagtccataagaaggaaggctggccaagtac 209757551

                                                                             
Query: 889       cgcgtacggagtgacaaaaatcggggtcactgtactctccaggatctatgccaggaaact 948
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209757552 cgcgtacggagtgacaaaaatcggggtcactgtactctccaggatctatgccaggaaact 209757611

                                                                             
Query: 949       gagtgagcagagagcaggggacaagatcctcctgaatgcctgctgcccagggtgggtgag 1008
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209757612 gagtgagcagagagcaggggacaagatcctcctgaatgcctgctgcccagggtgggtgag 209757671

                                                                             
Query: 1009      aactgacatggctggacccaaagcccccaagagcccagaggaaggagcagagacccccgt 1068
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 209757672 aactgacatggctggacccaaagcccccaagagcccagaggaaggagcagagacccccgc 209757731

                                                                             
Query: 1069      gtacctggcccttttaccctcagatgcagaggggcctcacggtcagtttgtttctgnnnn 1128
                 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
Sbjct: 209757732 gtacctggcccttttgccctcagatgcagaggggcctcacggtcagtttgtttctgagaa 209757791

                                                                             
Query: 1129      nnnng-tgtaaaatggggtgttcccccttagagctacccctgggtcaatgcataatttgt 1187
                     | |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209757792 aaaagttgtagaatggggtgttcccccttagagctacccctgggtcaatgcataatttgt 209757851

                                                         
Query: 1188      gtcctgatttc-cccaaaggatacttaccctatcaaaaat 1226
                 ||||||||||| || ||||||||||||| |||||||||||
Sbjct: 209757852 gtcctgatttcaccaaaaggatacttacactatcaaaaat 209757891



 Score =  345 bits (174), Expect = 4e-92
 Identities = 264/294 (89%)
 Strand = Plus / Plus

                                                                             
Query: 307       cccgaccatgtcgtccaacattcgcgtggcggtggtgaccggcggcaacaagggcatcgg 366
                 |||| ||||||||||| |||  ||||||||| ||||||| |||| |||||||||||||||
Sbjct: 209843004 cccggccatgtcgtcctacacccgcgtggcgttggtgactggcgccaacaagggcatcgg 209843063

                                                                             
Query: 367       cctcgccatcgtgcgtgatctgtgccagcagttctcgggggatgtgatgcttacggcgcg 426
                 | ||||||||| |||||||||||||| ||||||||||||||||||| |||| ||  ||||
Sbjct: 209843064 cttcgccatcgcgcgtgatctgtgccggcagttctcgggggatgtggtgctcacctcgcg 209843123

                                                                             
Query: 427       ggacgtggcgagaggccaggcggcggtgcagcagctgcaggctgagggtctgagcccgcg 486
                 |||||  ||  | |||| |||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 209843124 ggacgctgctcggggccgggcggcggtgcagcagctgcaggccgagggcctgagcccgcg 209843183

                                                                             
Query: 487       cttccaccagctggatatcgacgaccttcggagcatccaggccctgcgcgacttcctgct 546
                  |||||||||||||| ||||||||||| | ||||||||  ||||||||||||||||||| 
Sbjct: 209843184 tttccaccagctggacatcgacgacctgcagagcatccgcgccctgcgcgacttcctgcg 209843243

                                                                       
Query: 547       caaggagtatgggggactcaacgtgctggtcaataacgcgggcatcgctttcaa 600
                 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 209843244 caaggagtatgggggactcaacgtgctggtcaacaacgcgggcatcgctttcaa 209843297



 Score =  216 bits (109), Expect = 2e-53
 Identities = 109/109 (100%)
 Strand = Plus / Plus

                                                                             
Query: 603       ctgttgatcccacaccgtttcatattcaagcagaagtaactatgaaaacaaacttcttgg 662
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209753085 ctgttgatcccacaccgtttcatattcaagcagaagtaactatgaaaacaaacttcttgg 209753144

                                                                  
Query: 663       gaacccgaaatgtatgcacagagctcctgcctctgataaaaccccaagg 711
                 |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209753145 gaacccgaaatgtatgcacagagctcctgcctctgataaaaccccaagg 209753193


>gb|GL896154.1| Sus scrofa unplaced genomic scaffold chrU_scaffold522
          Length = 37204

 Score =  650 bits (328), Expect = 0.0
 Identities = 328/328 (100%)
 Strand = Plus / Plus

                                                                         
Query: 1     tgattctctgctgtcaggcacgcggtcgctgggcaacggctcttcagcggacagctctcc 60
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14309 tgattctctgctgtcaggcacgcggtcgctgggcaacggctcttcagcggacagctctcc 14368

                                                                         
Query: 61    aaaccaaccccagcgccccttctctactttcccttcagccctagagcggcatcctggagc 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14369 aaaccaaccccagcgccccttctctactttcccttcagccctagagcggcatcctggagc 14428

                                                                         
Query: 121   caggccctcagcaggtggggcccgcgcctttgcactcagcccggaggctcgcggcgagag 180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14429 caggccctcagcaggtggggcccgcgcctttgcactcagcccggaggctcgcggcgagag 14488

                                                                         
Query: 181   tgctgctagtgggcacccaacccattctgcgtcgcatcggctgccagcattgcgcagacc 240
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14489 tgctgctagtgggcacccaacccattctgcgtcgcatcggctgccagcattgcgcagacc 14548

                                                                         
Query: 241   ttcggcctcgcgtttgggagaaaccagacccatccgctgtccgtgcagaggcaccgctgc 300
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14549 ttcggcctcgcgtttgggagaaaccagacccatccgctgtccgtgcagaggcaccgctgc 14608

                                         
Query: 301   cccgctcccgaccatgtcgtccaacatt 328
             ||||||||||||||||||||||||||||
Sbjct: 14609 cccgctcccgaccatgtcgtccaacatt 14636



 Score =  494 bits (249), Expect = e-137
 Identities = 255/257 (99%)
 Strand = Plus / Plus

                                                                         
Query: 346   cggcggcaacaagggcatcggcctcgccatcgtgcgtgatctgtgccagcagttctcggg 405
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14737 cggcggcaacaagggcatcggcctcgccatcgtgcgtgatctgtgccagcagttctcggg 14796

                                                                         
Query: 406   ggatgtgatgcttacggcgcgggacgtggcgagaggccaggcggcggtgcagcagctgca 465
             |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 14797 ggatgtgatgcttacggcgcgggacgtggcgagaggccaggctggggtgcagcagctgca 14856

                                                                         
Query: 466   ggctgagggtctgagcccgcgcttccaccagctggatatcgacgaccttcggagcatcca 525
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14857 ggctgagggtctgagcccgcgcttccaccagctggatatcgacgaccttcggagcatcca 14916

                                                                         
Query: 526   ggccctgcgcgacttcctgctcaaggagtatgggggactcaacgtgctggtcaataacgc 585
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14917 ggccctgcgcgacttcctgctcaaggagtatgggggactcaacgtgctggtcaataacgc 14976

                              
Query: 586   gggcatcgctttcaaaa 602
             |||||||||||||||||
Sbjct: 14977 gggcatcgctttcaaaa 14993



 Score =  216 bits (109), Expect = 2e-53
 Identities = 109/109 (100%)
 Strand = Plus / Plus

                                                                         
Query: 603   ctgttgatcccacaccgtttcatattcaagcagaagtaactatgaaaacaaacttcttgg 662
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15584 ctgttgatcccacaccgtttcatattcaagcagaagtaactatgaaaacaaacttcttgg 15643

                                                              
Query: 663   gaacccgaaatgtatgcacagagctcctgcctctgataaaaccccaagg 711
             |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15644 gaacccgaaatgtatgcacagagctcctgcctctgataaaaccccaagg 15692



 Score =  188 bits (95), Expect = 5e-45
 Identities = 95/95 (100%)
 Strand = Plus / Plus

                                                                         
Query: 709   aggcagagtggtgaatgtgtctagcactgagagtgtcagagctcttaacaactgcagtcc 768
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19860 aggcagagtggtgaatgtgtctagcactgagagtgtcagagctcttaacaactgcagtcc 19919

                                                
Query: 769   tgaactgcaacagaagttcaagagtgagaccatca 803
             |||||||||||||||||||||||||||||||||||
Sbjct: 19920 tgaactgcaacagaagttcaagagtgagaccatca 19954



 Score =  141 bits (71), Expect = 1e-30
 Identities = 95/103 (92%)
 Strand = Plus / Plus

                                                                         
Query: 609   atcccacaccgtttcatattcaagcagaagtaactatgaaaacaaacttcttgggaaccc 668
             |||||||||||||||||||||| |||||| | |||||||||||||||||| |||||||||
Sbjct: 30512 atcccacaccgtttcatattcaggcagaactgactatgaaaacaaacttcatgggaaccc 30571

                                                        
Query: 669   gaaatgtatgcacagagctcctgcctctgataaaaccccaagg 711
             ||||||| ||||||||||| |||||||| |||||||| |||||
Sbjct: 30572 gaaatgtgtgcacagagcttctgcctctaataaaacctcaagg 30614



 Score = 87.7 bits (44), Expect = 1e-14
 Identities = 47/48 (97%)
 Strand = Plus / Plus

                                                             
Query: 1134  tgtaaaatggggtgttcccccttagagctacccctgggtcaatgcata 1181
             |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19958 tgtagaatggggtgttcccccttagagctacccctgggtcaatgcata 20005



 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 84/98 (85%)
 Strand = Plus / Plus

                                                                         
Query: 404   ggggatgtgatgcttacggcgcgggacgtggcgagaggccaggcggcggtgcagcagctg 463
             ||||| ||| |||| || ||| ||||||||||  |||||||||| || ||| |||| |||
Sbjct: 29790 ggggacgtggtgctcacagcgagggacgtggcacgaggccaggcagccgtgaagcaactg 29849

                                                   
Query: 464   caggctgagggtctgagcccgcgcttccaccagctgga 501
             || || ||||| ||||||||||||||||||||||||||
Sbjct: 29850 caagccgagggcctgagcccgcgcttccaccagctgga 29887


>gb|GL896228.1| Sus scrofa unplaced genomic scaffold chrU_scaffold59
          Length = 122

 Score =  159 bits (80), Expect = 5e-36
 Identities = 92/96 (95%)
 Strand = Plus / Plus

                                                                        
Query: 1025 cccaaagcccccaagagcccagaggaaggagcagagacccccgtgtacctggccctttta 1084
            ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| 
Sbjct: 1    cccaaagcccccaagagcccagaggtaggagcagagacccccgtgtacttggcccttttg 60

                                                
Query: 1085 ccctcagatgcagaggggcctcacggtcagtttgtt 1120
            ||||||||||||||||||||||| ||||||||||||
Sbjct: 61   ccctcagatgcagaggggcctcatggtcagtttgtt 96


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,455,347
Number of extensions: 213
Number of successful extensions: 213
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 13
Length of query: 1328
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1307
Effective length of database: 2,808,413,156
Effective search space: 3670595994892
Effective search space used: 3670595994892
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)