Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001812
(1328 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001249306.1| PREDICTED: carbonyl reductase-like [Bos taur... 474 e-134
Alignment gi|NP_001029685.1| carbonyl reductase [NADPH] 1 [Bos taurus]. 471 e-133
Alignment gi|XP_002702394.1| PREDICTED: carbonyl reductase-like [Bos taur... 455 e-128
Alignment gi|NP_001030258.1| 20-beta-hydroxysteroid dehydrogenase-like [B... 436 e-122
Alignment gi|XP_001249559.3| PREDICTED: 20-beta-hydroxysteroid dehydrogen... 436 e-122
Alignment gi|NP_001069202.1| carbonyl reductase [NADPH] 3 [Bos taurus]. 421 e-118
Alignment gi|XP_002685211.1| PREDICTED: 20-beta-hydroxysteroid dehydrogen... 221 1e-57
Alignment gi|NP_001093783.1| dehydrogenase/reductase SDR family member 12... 68 2e-11
Alignment gi|NP_001068813.1| retinol dehydrogenase 13 [Bos taurus]. 68 2e-11
Alignment gi|NP_001069155.1| dehydrogenase/reductase SDR family member 13... 67 4e-11
>ref|XP_001249306.1| PREDICTED: carbonyl reductase-like [Bos taurus].
Length = 277
Score = 474 bits (1221), Expect = e-134
Identities = 236/274 (86%), Positives = 253/274 (92%)
Frame = +2
Query: 314 MSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH 493
MSS+ VA+VTG NKGIG IVRDLC++FSGDV+LTARD ARG+AAVQQLQAEGLSP FH
Sbjct: 1 MSSSNCVALVTGANKGIGFVIVRDLCRRFSGDVVLTARDEARGRAAVQQLQAEGLSPLFH 60
Query: 494 QLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRN 673
QLDIDD +SI+ALRDFL KEYGGL+VLVNNAGIAFKT D TPFHIQAEVTMKTNF GTR+
Sbjct: 61 QLDIDDRQSIRALRDFLRKEYGGLDVLVNNAGIAFKTADTTPFHIQAEVTMKTNFFGTRD 120
Query: 674 VCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTK 853
VCTELLPLIKPQGRVVNVSS+ SV +L CSPELQQKF+SETITEEELVGLMNKFVEDTK
Sbjct: 121 VCTELLPLIKPQGRVVNVSSSVSVSSLKKCSPELQQKFQSETITEEELVGLMNKFVEDTK 180
Query: 854 NGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAGPKA 1033
NGVH+KEGWP TAYGVTKIGVTVLSRI+ARK+SEQR GDKILLNACCPGWVRTDM GPKA
Sbjct: 181 NGVHRKEGWPDTAYGVTKIGVTVLSRIHARKMSEQRGGDKILLNACCPGWVRTDMGGPKA 240
Query: 1034 PKSPEEGAETPVYLALLPSDAEGPHGQFVSEKKV 1135
PKSPEEGAETPVYLALLP DAEGPHGQFV EK+V
Sbjct: 241 PKSPEEGAETPVYLALLPPDAEGPHGQFVHEKEV 274
>ref|NP_001029685.1| carbonyl reductase [NADPH] 1 [Bos taurus].
Length = 277
Score = 471 bits (1212), Expect = e-133
Identities = 235/274 (85%), Positives = 252/274 (91%)
Frame = +2
Query: 314 MSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH 493
MSS+ VA+VTG NKGIG IVRDLC++FSGDV+LTARD ARG+AAVQQLQAEGLSP FH
Sbjct: 1 MSSSNCVALVTGANKGIGFVIVRDLCRRFSGDVVLTARDEARGRAAVQQLQAEGLSPLFH 60
Query: 494 QLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRN 673
QLDIDD +SI+ALRDFL KEYGGL+VLVNNAGIAFKT D TPFHIQAEVTMKTNF GTR+
Sbjct: 61 QLDIDDRQSIRALRDFLRKEYGGLDVLVNNAGIAFKTADTTPFHIQAEVTMKTNFFGTRD 120
Query: 674 VCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTK 853
VCTELLPLIKPQGRVVNVSS SV +L CS ELQQKF+SETITEEELVGLMNKFVEDTK
Sbjct: 121 VCTELLPLIKPQGRVVNVSSFVSVNSLKKCSRELQQKFRSETITEEELVGLMNKFVEDTK 180
Query: 854 NGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAGPKA 1033
NGVH+KEGWP TAYGVTKIGVTVLSRI+ARKLSEQR GDKILLNACCPGWVRTDM GPKA
Sbjct: 181 NGVHRKEGWPDTAYGVTKIGVTVLSRIHARKLSEQRGGDKILLNACCPGWVRTDMGGPKA 240
Query: 1034 PKSPEEGAETPVYLALLPSDAEGPHGQFVSEKKV 1135
KSPEEGAETPVYLALLPSDAEGPHG+F+SEK+V
Sbjct: 241 SKSPEEGAETPVYLALLPSDAEGPHGEFISEKRV 274
>ref|XP_002702394.1| PREDICTED: carbonyl reductase-like [Bos taurus].
Length = 277
Score = 455 bits (1170), Expect = e-128
Identities = 228/274 (83%), Positives = 246/274 (89%)
Frame = +2
Query: 314 MSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH 493
MSS+ RVA+VTG NKG+G AIVR L F GDV+LTA D A+G+AAVQQLQ +GLSP FH
Sbjct: 1 MSSSTRVALVTGANKGLGFAIVRALAGGFQGDVVLTAPDEAQGRAAVQQLQTQGLSPLFH 60
Query: 494 QLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRN 673
QLDIDD +SI+ALRDFL KEYGGL+VLVNNAGIAFKT D TPFHIQAEVTMKTNF GTR+
Sbjct: 61 QLDIDDRQSIRALRDFLRKEYGGLDVLVNNAGIAFKTADTTPFHIQAEVTMKTNFFGTRD 120
Query: 674 VCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTK 853
VCTELLPLIKPQGRVVNVSS SV +L CS ELQQKF+SETITEEELVGLMNKFVEDTK
Sbjct: 121 VCTELLPLIKPQGRVVNVSSFVSVNSLKKCSRELQQKFRSETITEEELVGLMNKFVEDTK 180
Query: 854 NGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAGPKA 1033
NGVH+KE WP TAYGVTKIGVTVLSRI+ARKLSEQR GDKILLNACCPGWVRTDM GPKA
Sbjct: 181 NGVHRKECWPDTAYGVTKIGVTVLSRIHARKLSEQRGGDKILLNACCPGWVRTDMGGPKA 240
Query: 1034 PKSPEEGAETPVYLALLPSDAEGPHGQFVSEKKV 1135
KSPEEGAETPVYLALLPSDAEGPHG+F+SEK+V
Sbjct: 241 SKSPEEGAETPVYLALLPSDAEGPHGEFISEKRV 274
>ref|NP_001030258.1| 20-beta-hydroxysteroid dehydrogenase-like [Bos taurus].
Length = 286
Score = 436 bits (1120), Expect = e-122
Identities = 219/275 (79%), Positives = 242/275 (88%), Gaps = 1/275 (0%)
Frame = +2
Query: 314 MSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH 493
MSS+ RVA+VTG NKG+G AIVRDLC++F GDV+LTARD ARG+AAVQQLQAEGLSPRFH
Sbjct: 1 MSSSTRVALVTGANKGLGFAIVRDLCRRFPGDVVLTARDEARGRAAVQQLQAEGLSPRFH 60
Query: 494 QLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRN 673
QLDI DL+SI ALRDFL KEYGGL+VLVNNA IAF+ DPTP I+AE+TMKTNF GTR+
Sbjct: 61 QLDITDLQSIHALRDFLRKEYGGLDVLVNNAAIAFQLSDPTPTPIKAEMTMKTNFFGTRD 120
Query: 674 VCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTK 853
+CTELLPL+KPQGRVVN+SS +AL +CSPELQQK +SETITEEELVGLMNKFVEDTK
Sbjct: 121 ICTELLPLMKPQGRVVNMSSGWGFKALESCSPELQQKLRSETITEEELVGLMNKFVEDTK 180
Query: 854 NGVHKKEGWP-STAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAGPK 1030
NGVH+KEGWP + YGV KIG+T LSRI ARKLSEQR GDKILLNACCPGWVRTDM G K
Sbjct: 181 NGVHRKEGWPDNNIYGVAKIGITALSRIQARKLSEQRGGDKILLNACCPGWVRTDMGGSK 240
Query: 1031 APKSPEEGAETPVYLALLPSDAEGPHGQFVSEKKV 1135
A KS EEG ETP+YLALLPSDAEGPHGQFV EKKV
Sbjct: 241 AFKSLEEGIETPMYLALLPSDAEGPHGQFVHEKKV 275
>ref|XP_001249559.3| PREDICTED: 20-beta-hydroxysteroid dehydrogenase-like [Bos taurus].
Length = 286
Score = 436 bits (1120), Expect = e-122
Identities = 219/275 (79%), Positives = 242/275 (88%), Gaps = 1/275 (0%)
Frame = +2
Query: 314 MSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH 493
MSS+ RVA+VTG NKG+G AIVRDLC++F GDV+LTARD ARG+AAVQQLQAEGLSPRFH
Sbjct: 1 MSSSTRVALVTGANKGLGFAIVRDLCRRFPGDVVLTARDEARGRAAVQQLQAEGLSPRFH 60
Query: 494 QLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRN 673
QLDI DL+SI ALRDFL KEYGGL+VLVNNA IAF+ DPTP I+AE+TMKTNF GTR+
Sbjct: 61 QLDITDLQSIHALRDFLRKEYGGLDVLVNNAAIAFQLSDPTPTPIKAEMTMKTNFFGTRD 120
Query: 674 VCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTK 853
+CTELLPL+KPQGRVVN+SS +AL +CSPELQQK +SETITEEELVGLMNKFVEDTK
Sbjct: 121 ICTELLPLMKPQGRVVNMSSGWGFKALESCSPELQQKLRSETITEEELVGLMNKFVEDTK 180
Query: 854 NGVHKKEGWP-STAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAGPK 1030
NGVH+KEGWP + YGV KIG+T LSRI ARKLSEQR GDKILLNACCPGWVRTDM G K
Sbjct: 181 NGVHRKEGWPDNNIYGVAKIGITALSRIQARKLSEQRGGDKILLNACCPGWVRTDMGGSK 240
Query: 1031 APKSPEEGAETPVYLALLPSDAEGPHGQFVSEKKV 1135
A KS EEG ETP+YLALLPSDAEGPHGQFV EKKV
Sbjct: 241 AFKSLEEGIETPMYLALLPSDAEGPHGQFVHEKKV 275
>ref|NP_001069202.1| carbonyl reductase [NADPH] 3 [Bos taurus].
Length = 277
Score = 421 bits (1082), Expect = e-118
Identities = 206/276 (74%), Positives = 239/276 (86%)
Frame = +2
Query: 314 MSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH 493
MSS RVA+VTG NKGIG AI RDLC++F GDV+LTARD ARG+AAVQQLQAEGLSPRFH
Sbjct: 1 MSSYTRVALVTGANKGIGFAIARDLCREFPGDVVLTARDKARGRAAVQQLQAEGLSPRFH 60
Query: 494 QLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRN 673
QLDIDDL+SI+ALRDFL KEYGGLNVLVNNAGIAFKT DPTPF IQAE+T+KTNF TRN
Sbjct: 61 QLDIDDLQSIRALRDFLRKEYGGLNVLVNNAGIAFKTDDPTPFDIQAEMTLKTNFFATRN 120
Query: 674 VCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTK 853
VCTELLP++KP GRVVNVSS++ +AL NCS +LQ+KF+ ET+TEE+LV LM KFVEDTK
Sbjct: 121 VCTELLPIVKPHGRVVNVSSSQGSQALENCSEDLQEKFRCETLTEEDLVDLMKKFVEDTK 180
Query: 854 NGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAGPKA 1033
N VH++EGWP++AYGV+K+GVTVLSRI AR+L E+R D+ILLNACCPGWV+TD+ G A
Sbjct: 181 NEVHEREGWPNSAYGVSKLGVTVLSRILARRLEEKRKADRILLNACCPGWVKTDLGGAHA 240
Query: 1034 PKSPEEGAETPVYLALLPSDAEGPHGQFVSEKKV*N 1141
++ EEGAETPVYLALLP DA PHGQ V +K V N
Sbjct: 241 SRTVEEGAETPVYLALLPPDATEPHGQLVRDKVVQN 276
>ref|XP_002685211.1| PREDICTED: 20-beta-hydroxysteroid dehydrogenase-like [Bos taurus].
Length = 210
Score = 221 bits (563), Expect = 1e-57
Identities = 114/145 (78%), Positives = 123/145 (84%), Gaps = 1/145 (0%)
Frame = +2
Query: 710 GRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTKNGVHKKEGW-PS 886
GRVVNVSS S AL C+ +LQQK +SETITEEELVGLMNKFVEDTKNGVH+KEGW +
Sbjct: 16 GRVVNVSSRVSFAALKTCTSKLQQKLRSETITEEELVGLMNKFVEDTKNGVHRKEGWLDN 75
Query: 887 TAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAGPKAPKSPEEGAETP 1066
YGV KIG+T LSRI ARKLSEQR DKILLNACCPGWVRTDMAG KAPKSPEEGA P
Sbjct: 76 NIYGVVKIGITALSRIQARKLSEQRGQDKILLNACCPGWVRTDMAGLKAPKSPEEGA--P 133
Query: 1067 VYLALLPSDAEGPHGQFVSEKKV*N 1141
VYLALLPSDA+G HG+FVSEKK+ N
Sbjct: 134 VYLALLPSDAKGRHGEFVSEKKLYN 158
>ref|NP_001093783.1| dehydrogenase/reductase SDR family member 12 [Bos taurus].
Length = 317
Score = 68.2 bits (165), Expect = 2e-11
Identities = 79/297 (26%), Positives = 122/297 (41%), Gaps = 15/297 (5%)
Frame = +2
Query: 329 RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFHQLDID 508
R +VTGGN GIG A ++ ++ G V L RD +R + A ++ E + L I
Sbjct: 41 RAFMVTGGNSGIGKATAMEIAKR-GGTVHLVCRDHSRAEGAKAEIIRESGNQNIF-LHIV 98
Query: 509 DLRSIQALRDFL--LKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRNVCT 682
DL +++ F+ K+ LNVL+NNAG + T + E TN LG + T
Sbjct: 99 DLSLPKSVWKFVENFKQEHTLNVLINNAGCMVNKRELTEDGL--EKNFATNTLGVYVLTT 156
Query: 683 ELLPLIKPQG--RVVNVSSTES-VRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTK 853
L+P+++ + RV+ VSS V+ LN P+ ++ T+ + ++ +
Sbjct: 157 ALIPVLEKEHDPRVITVSSGGMLVQKLNTDDPQSERTAFDGTMV----------YAQNKR 206
Query: 854 NGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAGPKA 1033
V E W RA I + PGWV T
Sbjct: 207 QQVVLTERWA-------------------------RAHPAIHFSCMHPGWVDTPGVRLSM 241
Query: 1034 P----------KSPEEGAETPVYLALLPSDAEGPHGQFVSEKKV*NGVFPLRATPGS 1174
P +S +GA+T ++LAL P+ P G F ++K PL T S
Sbjct: 242 PGFHARLGARLRSEAQGADTVLWLALAPAATAQPSGCFFQDRKPAPTHLPLARTSSS 298
>ref|NP_001068813.1| retinol dehydrogenase 13 [Bos taurus].
Length = 335
Score = 68.2 bits (165), Expect = 2e-11
Identities = 80/288 (27%), Positives = 133/288 (46%), Gaps = 25/288 (8%)
Frame = +2
Query: 329 RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFHQLDID 508
+ +VTG N GIG +L ++ G+++L RD+ + +AA ++++ E L+ R + +D
Sbjct: 39 KTVIVTGANTGIGKQTALELAKR-GGNIILACRDMEKCEAAAKEIRGETLNHRVNARHLD 97
Query: 509 DLRSIQALRDFLLK---EYGGLNVLVNNAGIA----FKTVDPTPFHIQAEVTMKTNFLGT 667
L S++++R+F K E +++L+NNA + + T D F +Q V +FL T
Sbjct: 98 -LASLKSIREFAAKVTEEEEHVHILINNAAVMRCPHWTTED--GFEMQLGVNYLGHFLLT 154
Query: 668 RNVCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVED 847
N+ + L P R++NVSS V + I E+L K+ D
Sbjct: 155 -NLLLDKLKASAP-SRIINVSSLAHV---------------AGHIDFEDLNWEKRKY--D 195
Query: 848 TKNGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMA-- 1021
TK AY +K+ V V ++ +R+L G + +NA PG RT++
Sbjct: 196 TK-----------AAYCQSKLAVVVSTKELSRRLQ----GTGVTVNALHPGVARTELGRH 240
Query: 1022 -------------GP---KAPKSPEEGAETPVYLALLPSDAEGPHGQF 1117
GP KSPE A+ VYLA + + EG G++
Sbjct: 241 TGMHSSAFSSFTLGPIFWLLVKSPELAAQPSVYLA-VAEELEGVSGKY 287
>ref|NP_001069155.1| dehydrogenase/reductase SDR family member 13 precursor [Bos taurus].
Length = 377
Score = 67.0 bits (162), Expect = 4e-11
Identities = 78/286 (27%), Positives = 119/286 (41%), Gaps = 19/286 (6%)
Frame = +2
Query: 281 PCRGTAAPLPTMSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQ 460
PCRG A S R AVVTG N GIG +L ++ V+L R RG+AA
Sbjct: 27 PCRGLA------SLRGRTAVVTGANSGIGKMTALELARR-GARVVLACRSRERGEAAAFD 79
Query: 461 LQAEGLSPR--FHQLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQA 634
L+ E + F LD+ L S++A L L++L++NAGI+ PF++
Sbjct: 80 LRQESGNNEVIFMALDLASLASVRAFATAFLSSEPRLDILIHNAGISSCGRTREPFNL-- 137
Query: 635 EVTMKTNFLGTRNVCTELLPLIKPQ--GRVVNVSSTESVRALNNCSPELQQKFKSETITE 808
++ N +G + LLP +K RVV VSS R + T +
Sbjct: 138 --LLRVNHIGPFLLTHLLLPRLKTSAPSRVVVVSSAAHRRGRLDF-----------TRLD 184
Query: 809 EELVGLMNKFVEDTKNGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNA 988
+VG + AY +K+ + ++AR+L+ Q G + A
Sbjct: 185 HPVVGWQQEL----------------RAYANSKLA----NVLFARELATQLEGTGVTCYA 224
Query: 989 CCPGWVRTDMAGPKAP---------------KSPEEGAETPVYLAL 1081
PG V +++ P ++P GA+TP+Y AL
Sbjct: 225 AHPGPVNSELFLRHVPGWLRPLLRPLAWLVLRAPRGGAQTPLYCAL 270
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 51,833,319
Number of extensions: 1480228
Number of successful extensions: 6281
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 6242
Number of HSP's successfully gapped: 15
Length of query: 442
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 337
Effective length of database: 14,207,134
Effective search space: 4787804158
Effective search space used: 4787804158
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001812
(1328 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852675.1| PREDICTED: similar to Carbonyl reductase [NADPH... 474 e-133
Alignment gi|XP_537903.1| PREDICTED: similar to Carbonyl reductase [NADPH... 431 e-121
Alignment gi|XP_544873.2| PREDICTED: similar to carbonyl reductase 3 [Can... 426 e-119
Alignment gi|XP_535589.2| PREDICTED: similar to Carbonyl reductase [NADPH... 426 e-119
Alignment gi|XP_533000.2| PREDICTED: similar to Retinol dehydrogenase 12 ... 69 8e-12
Alignment gi|XP_540096.2| PREDICTED: similar to retinol dehydrogenase 14 ... 65 1e-10
Alignment gi|XP_854354.1| PREDICTED: similar to Retinol dehydrogenase 11 ... 65 2e-10
Alignment gi|XP_548293.2| PREDICTED: similar to retinol dehydrogenase 11 ... 64 3e-10
Alignment gi|XP_547866.2| PREDICTED: similar to retinol dehydrogenase 12 ... 64 4e-10
Alignment gi|XP_854127.1| PREDICTED: similar to Retinol dehydrogenase 13 ... 63 6e-10
>ref|XP_852675.1| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent
carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase)
(Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin
dehydrogenase [NADP+]) [Canis familiaris].
Length = 277
Score = 474 bits (1219), Expect = e-133
Identities = 235/274 (85%), Positives = 253/274 (92%)
Frame = +2
Query: 314 MSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH 493
MS+ RVA+VTG NKGIG AI R+LC+QFSGDV+LTARD ARG+AAVQQLQAEGLSPRFH
Sbjct: 1 MSAASRVALVTGANKGIGFAIARELCRQFSGDVVLTARDEARGRAAVQQLQAEGLSPRFH 60
Query: 494 QLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRN 673
LDIDDL+SI+ALRDFL KEYGGL+VLVNNAGIAFKT DPTPFHIQAEVTMKTNF GTR+
Sbjct: 61 LLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKTNDPTPFHIQAEVTMKTNFFGTRD 120
Query: 674 VCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTK 853
VCTELLPL+KPQGRVVNVSS SVRAL +CSPELQQKF+SE ITEEELVGLMNKFVEDTK
Sbjct: 121 VCTELLPLMKPQGRVVNVSSVVSVRALKSCSPELQQKFRSEAITEEELVGLMNKFVEDTK 180
Query: 854 NGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAGPKA 1033
GVH+ EGWP AYGVTKIGVTVLSRI+ARKLSEQR DKILLNACCPGWVRTDMAGP+A
Sbjct: 181 KGVHRNEGWPDNAYGVTKIGVTVLSRIHARKLSEQRRDDKILLNACCPGWVRTDMAGPRA 240
Query: 1034 PKSPEEGAETPVYLALLPSDAEGPHGQFVSEKKV 1135
PKSPEEGAETPVYLALLPSDAEGPHG+F+ EKKV
Sbjct: 241 PKSPEEGAETPVYLALLPSDAEGPHGEFLMEKKV 274
>ref|XP_537903.1| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent
carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase)
(Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin
dehydrogenase [NADP+]) [Canis familiaris].
Length = 296
Score = 431 bits (1109), Expect = e-121
Identities = 217/277 (78%), Positives = 238/277 (85%), Gaps = 3/277 (1%)
Frame = +2
Query: 314 MSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH 493
MS +RVAVVTG NKG+G AI RDLC+ F GDV+LT+RD ARG+AAVQ L+AEGLSPRFH
Sbjct: 1 MSLALRVAVVTGANKGLGFAITRDLCRNFPGDVILTSRDEARGRAAVQHLKAEGLSPRFH 60
Query: 494 QLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRN 673
LDID+L+SI+ALRDFL +EYGGL+VLVNNAGI F DPTP HIQAEVT+KTNF GTR+
Sbjct: 61 LLDIDNLQSIRALRDFLWEEYGGLDVLVNNAGIVFTPDDPTPLHIQAEVTLKTNFFGTRD 120
Query: 674 VCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTK 853
+CTELLPL+KPQGRVVNVSS S AL CSPELQQKF SETITEEEL LMNKF+ED K
Sbjct: 121 ICTELLPLVKPQGRVVNVSSIMSFLALKQCSPELQQKFTSETITEEELGMLMNKFLEDVK 180
Query: 854 NGVHKKEGWPS---TAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAG 1024
NGVHKKEGWP AY V+K+GVTVLSRI+ARKLSEQR DKILLNACCPGWVRTDM G
Sbjct: 181 NGVHKKEGWPDIKIAAYSVSKMGVTVLSRIHARKLSEQRRDDKILLNACCPGWVRTDMGG 240
Query: 1025 PKAPKSPEEGAETPVYLALLPSDAEGPHGQFVSEKKV 1135
PK KSPEEGAETPVYLALLPSDAEGPHG+FV EKKV
Sbjct: 241 PKGIKSPEEGAETPVYLALLPSDAEGPHGEFVMEKKV 277
>ref|XP_544873.2| PREDICTED: similar to carbonyl reductase 3 [Canis familiaris].
Length = 484
Score = 426 bits (1096), Expect = e-119
Identities = 212/295 (71%), Positives = 244/295 (82%)
Frame = +2
Query: 257 GETRPIRCPCRGTAAPLPTMSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVA 436
G P+R P R PLP MSS RVA+VTG N+GIG AI R+LC+QFSGDV+LTARD A
Sbjct: 190 GARSPVRSP-RAPGPPLPAMSSCSRVALVTGANRGIGFAIARELCRQFSGDVVLTARDEA 248
Query: 437 RGQAAVQQLQAEGLSPRFHQLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPT 616
RG+AAVQQLQAEGLSPRFH LDIDDL+SI+ALRDFL KEYGGLNVLVNNAGIAFK DPT
Sbjct: 249 RGRAAVQQLQAEGLSPRFHLLDIDDLQSIRALRDFLRKEYGGLNVLVNNAGIAFKPDDPT 308
Query: 617 PFHIQAEVTMKTNFLGTRNVCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSE 796
PF IQAE+T+KTNF TRNVC ELLP+IKP GRVVN+SS E +AL NCS +LQ+KF+ E
Sbjct: 309 PFDIQAEITLKTNFFATRNVCNELLPIIKPHGRVVNISSLEGSKALENCSADLQKKFQCE 368
Query: 797 TITEEELVGLMNKFVEDTKNGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKI 976
T+TEE+LV LM KFVEDT N VH++EGWP++AYGV+K+GVTVLSRI A +L E+R D+I
Sbjct: 369 TLTEEDLVDLMKKFVEDTSNEVHEREGWPNSAYGVSKLGVTVLSRILAWRLDEKRKVDRI 428
Query: 977 LLNACCPGWVRTDMAGPKAPKSPEEGAETPVYLALLPSDAEGPHGQFVSEKKV*N 1141
LLNACCPGWV+TDM GP P++ EEGAETPVYLALLP DA PHGQ V +K V N
Sbjct: 429 LLNACCPGWVKTDMGGPYGPRTVEEGAETPVYLALLPPDATEPHGQLVHDKVVLN 483
>ref|XP_535589.2| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent
carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase)
(Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin
dehydrogenase [NADP+]) [Canis familiaris].
Length = 292
Score = 426 bits (1096), Expect = e-119
Identities = 215/277 (77%), Positives = 234/277 (84%), Gaps = 3/277 (1%)
Frame = +2
Query: 314 MSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH 493
MSS RVAVVTG NKG+G AI+RDLC+ FSGDV+LTARD ARG+AAVQQLQ++GLSPRFH
Sbjct: 1 MSSAPRVAVVTGANKGLGFAIMRDLCRNFSGDVVLTARDEARGRAAVQQLQSKGLSPRFH 60
Query: 494 QLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRN 673
LDIDDL+SI LRDFL KEY GL+VLVNNAGI F T DPTP IQAEVT+KTNF GTRN
Sbjct: 61 LLDIDDLQSICTLRDFLCKEYRGLDVLVNNAGINFDTGDPTPLPIQAEVTLKTNFFGTRN 120
Query: 674 VCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTK 853
VC ELLPL+KPQGRVVNVSS L CSPELQQKF SE ITEEEL LMNKFVED K
Sbjct: 121 VCRELLPLMKPQGRVVNVSSVMGFVTLKQCSPELQQKFTSEAITEEELGMLMNKFVEDVK 180
Query: 854 NGVHKKEGWPS---TAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAG 1024
NGVHKKEGWP YG++K+G+T+LSRI+ARKLSEQR GDKI LNACCPGW+RTDM G
Sbjct: 181 NGVHKKEGWPDMKLVTYGISKMGITILSRIHARKLSEQRRGDKIFLNACCPGWLRTDMGG 240
Query: 1025 PKAPKSPEEGAETPVYLALLPSDAEGPHGQFVSEKKV 1135
PK KSPEEGAETPVYLALLPSDAEGPHG+FV EKKV
Sbjct: 241 PKGIKSPEEGAETPVYLALLPSDAEGPHGEFVMEKKV 277
>ref|XP_533000.2| PREDICTED: similar to Retinol dehydrogenase 12 [Canis familiaris].
Length = 596
Score = 69.3 bits (168), Expect = 8e-12
Identities = 50/141 (35%), Positives = 82/141 (58%), Gaps = 6/141 (4%)
Frame = +2
Query: 329 RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQ--AEGLSPRFHQLD 502
+ AVVTG N GIG A+ ++L ++ V+L R+ RGQ A+ ++Q ++G Q+D
Sbjct: 316 KTAVVTGANSGIGKAVCQELARR-GARVILACRNWERGQKALAEIQVASKGTCLLLGQVD 374
Query: 503 IDDLRSIQALRDFLLKEYGGLNVLVNNAGIAF--KTVDPTPFHIQAEVTMKTNFLGTRNV 676
+ + SI++ +LL+EY +++LVNNA I+ KT+ P ++T TN++G +
Sbjct: 375 LSSMASIRSFARWLLQEYPEIHLLVNNAAISGFPKTLTPEGL----DLTFATNYVGPFLL 430
Query: 677 CTELLPLIKPQG--RVVNVSS 733
L ++ G RVVNVSS
Sbjct: 431 TNLLQGALQRAGSARVVNVSS 451
>ref|XP_540096.2| PREDICTED: similar to retinol dehydrogenase 14 (all-trans and 9-cis)
isoform 1 [Canis familiaris].
Length = 336
Score = 65.1 bits (157), Expect = 1e-10
Identities = 88/303 (29%), Positives = 130/303 (42%), Gaps = 35/303 (11%)
Frame = +2
Query: 329 RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQL-----QAEGLSPR-- 487
+ ++TG N G+G A L + V++ RD AR + A QL QA G P
Sbjct: 44 KTVLITGANSGLGRATAAALLR-LGARVIMGCRDRARAEEAAGQLRRELRQAGGREPGSD 102
Query: 488 --------FHQLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGI----AFKTVDPTPFHIQ 631
+LD+ LRS++A +L+E L+VL+NNAGI KT D F +Q
Sbjct: 103 VGAAGELVVRELDLASLRSVRAFCQEVLQEEPRLDVLINNAGIFQCPYMKTED--GFEMQ 160
Query: 632 AEVTMKTNFLGTRNVCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEE 811
V +FL T N+ LL P R+V VSS + +K I E
Sbjct: 161 FGVNHLGHFLLT-NLLLGLLKNSAP-SRIVVVSS---------------KLYKYGDINFE 203
Query: 812 ELVGLMNKFVEDTKNGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNAC 991
+L +++ +K S Y +K+ + +R AR+L G + +N
Sbjct: 204 DL---------NSEQSYNK-----SFCYSRSKLANILFTRELARRLE----GTNVTVNVL 245
Query: 992 CPGWVRTDMAGP-KAP---------------KSPEEGAETPVYLALLPSDAEGPHGQFVS 1123
PG VRT++ P K+P EGA+T VYLA P + EG G++
Sbjct: 246 HPGIVRTNLGRHIHIPLLVRPLFNLVSWAFFKTPVEGAQTSVYLASSP-EVEGVSGKYFG 304
Query: 1124 EKK 1132
+ K
Sbjct: 305 DCK 307
>ref|XP_854354.1| PREDICTED: similar to Retinol dehydrogenase 11 (Retinal reductase
1) (RalR1) (Prostate short-chain dehydrogenase/reductase
1) (Androgen-regulated short-chain
dehydrogenase/reductase 1) (HCV core-binding protein
HCBP12) [Canis familiaris].
Length = 337
Score = 64.7 bits (156), Expect = 2e-10
Identities = 51/143 (35%), Positives = 73/143 (51%), Gaps = 8/143 (5%)
Frame = +2
Query: 329 RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRF--HQLD 502
+VAVVTG N GIG ++L Q+ V L RDV +G+ +++Q + + +LD
Sbjct: 61 KVAVVTGANTGIGKETAKELAQR-GARVYLACRDVLKGELVAREIQTMTGNKQVLVRKLD 119
Query: 503 IDDLRSIQALRDFLLKEYGGLNVLVNNAGIAF----KTVDPTPFHIQAEVTMKTNFLGTR 670
+ D +SI+A L E L++L+NNAG+ KTVD H M N LG
Sbjct: 120 LADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYTKTVDGFEMH------MGVNHLGHF 173
Query: 671 NVCTELLPLIKPQ--GRVVNVSS 733
+ LL +K R+VNVSS
Sbjct: 174 LLTHLLLEKLKESAPSRIVNVSS 196
>ref|XP_548293.2| PREDICTED: similar to retinol dehydrogenase 11 (predicted) [Canis
familiaris].
Length = 377
Score = 63.9 bits (154), Expect = 3e-10
Identities = 77/286 (26%), Positives = 118/286 (41%), Gaps = 19/286 (6%)
Frame = +2
Query: 281 PCRGTAAPLPTMSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQ 460
PC G A S R AVVTG N GIG +L ++ V+L R RG+AA
Sbjct: 27 PCGGIA------SLRGRTAVVTGANSGIGKMTALELARR-GARVVLACRSRERGEAAAFD 79
Query: 461 LQAEGLSPR--FHQLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQA 634
L+ E + F LD+ L S++A L L++L++NAGI+ PF++
Sbjct: 80 LRQESGNNEVIFMALDLASLASVRAFATAFLSSEPRLDILIHNAGISSCGRTHKPFNL-- 137
Query: 635 EVTMKTNFLGTRNVCTELLPLIK--PQGRVVNVSSTESVRALNNCSPELQQKFKSETITE 808
++ N +G + LLP +K RVV VSS R + T +
Sbjct: 138 --LLRVNHIGPFLLTHLLLPRLKTCAPSRVVVVSSAAHRRGRLDF-----------TRLD 184
Query: 809 EELVGLMNKFVEDTKNGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNA 988
+VG + AY +K+ + ++AR+L+ Q G + A
Sbjct: 185 RPVVGWQQEL----------------RAYADSKLA----NVLFARELATQLEGTGVTCYA 224
Query: 989 CCPGWVRTDMAGPKAP---------------KSPEEGAETPVYLAL 1081
PG V +++ P ++P GA+TP+Y AL
Sbjct: 225 AHPGPVNSELFLRHVPGWLCPLLRPLAWLMLRAPRGGAQTPLYCAL 270
>ref|XP_547866.2| PREDICTED: similar to retinol dehydrogenase 12 (all-trans and
9-cis) [Canis familiaris].
Length = 303
Score = 63.5 bits (153), Expect = 4e-10
Identities = 47/143 (32%), Positives = 75/143 (52%), Gaps = 8/143 (5%)
Frame = +2
Query: 329 RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRF--HQLD 502
+V V+TG N GIG R+L ++ V + RDV +G++A +++A+ + + +LD
Sbjct: 27 KVVVITGANTGIGKETARELARR-GARVYIACRDVLKGESAASEIRADTKNSQVLVRKLD 85
Query: 503 IDDLRSIQALRDFLLKEYGGLNVLVNNAGIAF----KTVDPTPFHIQAEVTMKTNFLGTR 670
+ D +SI+A + L E L++L+NNAG+ KT D H + N LG
Sbjct: 86 LSDTKSIRAFAEGFLAEEKQLHILINNAGVMMCPYSKTADGFETH------LGVNHLGHF 139
Query: 671 NVCTELLPLIKPQ--GRVVNVSS 733
+ LL +K RVVN+SS
Sbjct: 140 LLTHLLLERLKESTPARVVNLSS 162
>ref|XP_854127.1| PREDICTED: similar to Retinol dehydrogenase 13 [Canis familiaris].
Length = 334
Score = 63.2 bits (152), Expect = 6e-10
Identities = 75/287 (26%), Positives = 130/287 (45%), Gaps = 24/287 (8%)
Frame = +2
Query: 329 RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH--QLD 502
+ +VTG N GIG +L ++ G+++L RD+ + +AA ++++ E L+ R LD
Sbjct: 39 KTVIVTGANTGIGKQTALELARR-GGNIILACRDMEKCEAAAKEIRGETLNHRVSAWHLD 97
Query: 503 IDDLRSIQALRDFLLKEYGGLNVLVNNAGIA----FKTVDPTPFHIQAEVTMKTNFLGTR 670
+ L+SI+ +++E +++LVNNA + + T D F +Q V +FL T
Sbjct: 98 LASLKSIREFAAKIIEEEEQVHILVNNAAVMRCPHWTTKD--GFEMQFGVNHLGHFLLT- 154
Query: 671 NVCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDT 850
N+ + L P R++N+SS V + I ++L K+ DT
Sbjct: 155 NLLLDKLKASAP-SRIINLSSLAHV---------------AGHIDFDDLNWEKRKY--DT 196
Query: 851 KNGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMA--- 1021
K AY +K+ V ++ ++LS + G + +NA PG RT++
Sbjct: 197 K-----------AAYCQSKLAVI----LFTKELSRRLQGTGVTVNALHPGVARTELGRHT 241
Query: 1022 ------------GP---KAPKSPEEGAETPVYLALLPSDAEGPHGQF 1117
GP KSP+ A+ YLA + + EG G++
Sbjct: 242 GMHSSAFSSFTLGPIFWLLVKSPQLAAQPSTYLA-VAEELEGVSGKY 287
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 53,843,977
Number of extensions: 1510367
Number of successful extensions: 6036
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 6005
Number of HSP's successfully gapped: 13
Length of query: 442
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 336
Effective length of database: 15,340,888
Effective search space: 5154538368
Effective search space used: 5154538368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001812
(1328 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001748.1| carbonyl reductase [NADPH] 1 [Homo sapiens]. 493 e-139
Alignment gi|NP_001227.1| carbonyl reductase [NADPH] 3 [Homo sapiens]. 397 e-110
Alignment gi|NP_065956.1| retinol dehydrogenase 14 [Homo sapiens]. 65 2e-10
Alignment gi|NP_057110.3| retinol dehydrogenase 11 [Homo sapiens]. 63 7e-10
Alignment gi|NP_689656.2| retinol dehydrogenase 12 [Homo sapiens]. 62 9e-10
Alignment gi|NP_001139443.1| retinol dehydrogenase 13 isoform 1 [Homo sap... 61 2e-09
Alignment gi|NP_653284.2| dehydrogenase/reductase SDR family member 13 pr... 60 6e-09
Alignment gi|NP_057330.2| 17-beta-hydroxysteroid dehydrogenase 14 [Homo s... 54 2e-07
Alignment gi|NP_060911.2| peroxisomal trans-2-enoyl-CoA reductase [Homo s... 52 1e-06
Alignment gi|NP_057457.1| WW domain-containing oxidoreductase isoform 1 [... 50 6e-06
>ref|NP_001748.1| carbonyl reductase [NADPH] 1 [Homo sapiens].
Length = 277
Score = 493 bits (1268), Expect = e-139
Identities = 246/274 (89%), Positives = 259/274 (94%)
Frame = +2
Query: 314 MSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH 493
MSS I VA+VTGGNKGIGLAIVRDLC+ FSGDV+LTARDV RGQAAVQQLQAEGLSPRFH
Sbjct: 1 MSSGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFH 60
Query: 494 QLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRN 673
QLDIDDL+SI+ALRDFL KEYGGL+VLVNNAGIAFK DPTPFHIQAEVTMKTNF GTR+
Sbjct: 61 QLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRD 120
Query: 674 VCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTK 853
VCTELLPLIKPQGRVVNVSS SVRAL +CSPELQQKF+SETITEEELVGLMNKFVEDTK
Sbjct: 121 VCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTK 180
Query: 854 NGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAGPKA 1033
GVH+KEGWPS+AYGVTKIGVTVLSRI+ARKLSEQR GDKILLNACCPGWVRTDMAGPKA
Sbjct: 181 KGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGPKA 240
Query: 1034 PKSPEEGAETPVYLALLPSDAEGPHGQFVSEKKV 1135
KSPEEGAETPVYLALLP DAEGPHGQFVSEK+V
Sbjct: 241 TKSPEEGAETPVYLALLPPDAEGPHGQFVSEKRV 274
>ref|NP_001227.1| carbonyl reductase [NADPH] 3 [Homo sapiens].
Length = 277
Score = 397 bits (1020), Expect = e-110
Identities = 196/276 (71%), Positives = 234/276 (84%)
Frame = +2
Query: 314 MSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH 493
MSS RVA+VTG N+GIGLAI R+LC+QFSGDV+LTARDVARGQAAVQQLQAEGLSPRFH
Sbjct: 1 MSSCSRVALVTGANRGIGLAIARELCRQFSGDVVLTARDVARGQAAVQQLQAEGLSPRFH 60
Query: 494 QLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRN 673
QLDIDDL+SI+ALRDFL KEYGGLNVLVNNA +AFK+ DP PF I+AE+T+KTNF TRN
Sbjct: 61 QLDIDDLQSIRALRDFLRKEYGGLNVLVNNAAVAFKSDDPMPFDIKAEMTLKTNFFATRN 120
Query: 674 VCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTK 853
+C ELLP++KP GRVVN+SS + +RA NCS +LQ++F SET+TE +LV LM KFVEDTK
Sbjct: 121 MCNELLPIMKPHGRVVNISSLQCLRAFENCSEDLQERFHSETLTEGDLVDLMKKFVEDTK 180
Query: 854 NGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAGPKA 1033
N VH++EGWP++ YGV+K+GVTVLSRI AR+L E+R D+IL+NACCPG V+TDM G +
Sbjct: 181 NEVHEREGWPNSPYGVSKLGVTVLSRILARRLDEKRKADRILVNACCPGPVKTDMDGKDS 240
Query: 1034 PKSPEEGAETPVYLALLPSDAEGPHGQFVSEKKV*N 1141
++ EEGAETPVYLALLP DA P GQ V +K V N
Sbjct: 241 IRTVEEGAETPVYLALLPPDATEPQGQLVHDKVVQN 276
>ref|NP_065956.1| retinol dehydrogenase 14 [Homo sapiens].
Length = 336
Score = 64.7 bits (156), Expect = 2e-10
Identities = 85/303 (28%), Positives = 131/303 (43%), Gaps = 35/303 (11%)
Frame = +2
Query: 329 RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAE-------GLSPR 487
+ ++TG N G+G A +L + V++ RD AR + A QL+ E G P
Sbjct: 44 KTVLITGANSGLGRATAAELLR-LGARVIMGCRDRARAEEAAGQLRRELRQAAECGPEPG 102
Query: 488 F--------HQLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGI----AFKTVDPTPFHIQ 631
+LD+ LRS++A +L+E L+VL+NNAGI KT D F +Q
Sbjct: 103 VSGVGELIVRELDLASLRSVRAFCQEMLQEEPRLDVLINNAGIFQCPYMKTED--GFEMQ 160
Query: 632 AEVTMKTNFLGTRNVCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEE 811
V +FL T N+ LL P R+V VSS + +K I +
Sbjct: 161 FGVNHLGHFLLT-NLLLGLLKSSAP-SRIVVVSS---------------KLYKYGDINFD 203
Query: 812 ELVGLMNKFVEDTKNGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNAC 991
+L +++ +K S Y +K+ + +R AR+L G + +N
Sbjct: 204 DL---------NSEQSYNK-----SFCYSRSKLANILFTRELARRLE----GTNVTVNVL 245
Query: 992 CPGWVRTDMAGP-KAP---------------KSPEEGAETPVYLALLPSDAEGPHGQFVS 1123
PG VRT++ P K+P EGA+T +YLA P + EG G++
Sbjct: 246 HPGIVRTNLGRHIHIPLLVKPLFNLVSWAFFKTPVEGAQTSIYLASSP-EVEGVSGRYFG 304
Query: 1124 EKK 1132
+ K
Sbjct: 305 DCK 307
>ref|NP_057110.3| retinol dehydrogenase 11 [Homo sapiens].
Length = 318
Score = 62.8 bits (151), Expect = 7e-10
Identities = 50/143 (34%), Positives = 71/143 (49%), Gaps = 8/143 (5%)
Frame = +2
Query: 329 RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRF--HQLD 502
+V VVTG N GIG ++L Q+ V L RDV +G+ +++Q + + +LD
Sbjct: 42 KVVVVTGANTGIGKETAKELAQR-GARVYLACRDVEKGELVAKEIQTTTGNQQVLVRKLD 100
Query: 503 IDDLRSIQALRDFLLKEYGGLNVLVNNAGIAF----KTVDPTPFHIQAEVTMKTNFLGTR 670
+ D +SI+A L E L+VL+NNAG+ KT D HI N LG
Sbjct: 101 LSDTKSIRAFAKGFLAEEKHLHVLINNAGVMMCPYSKTADGFEMHI------GVNHLGHF 154
Query: 671 NVCTELLPLIKPQ--GRVVNVSS 733
+ LL +K R+VNVSS
Sbjct: 155 LLTHLLLEKLKESAPSRIVNVSS 177
>ref|NP_689656.2| retinol dehydrogenase 12 [Homo sapiens].
Length = 316
Score = 62.4 bits (150), Expect = 9e-10
Identities = 47/143 (32%), Positives = 73/143 (51%), Gaps = 8/143 (5%)
Frame = +2
Query: 329 RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRF--HQLD 502
+V V+TG N GIG R+L + V + RDV +G++A +++ + + + +LD
Sbjct: 40 KVVVITGANTGIGKETARELASR-GARVYIACRDVLKGESAASEIRVDTKNSQVLVRKLD 98
Query: 503 IDDLRSIQALRDFLLKEYGGLNVLVNNAGIAF----KTVDPTPFHIQAEVTMKTNFLGTR 670
+ D +SI+A + L E L++L+NNAG+ KT D H + N LG
Sbjct: 99 LSDTKSIRAFAEGFLAEEKQLHILINNAGVMMCPYSKTADGFETH------LGVNHLGHF 152
Query: 671 NVCTELLPLIK--PQGRVVNVSS 733
+ LL +K RVVNVSS
Sbjct: 153 LLTYLLLERLKVSAPARVVNVSS 175
>ref|NP_001139443.1| retinol dehydrogenase 13 isoform 1 [Homo sapiens].
Length = 331
Score = 61.2 bits (147), Expect = 2e-09
Identities = 73/293 (24%), Positives = 131/293 (44%), Gaps = 26/293 (8%)
Frame = +2
Query: 329 RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH--QLD 502
+ +VTG N GIG +L ++ G+++L RD+ + +AA + ++ E L+ + LD
Sbjct: 39 KTVIVTGANTGIGKQTALELARR-GGNIILACRDMEKCEAAAKDIRGETLNHHVNARHLD 97
Query: 503 IDDLRSIQALRDFLLKEYGGLNVLVNNAGIA----FKTVDPTPFHIQAEVTMKTNFLGTR 670
+ L+SI+ +++E +++L+NNAG+ + T D F +Q V +FL T
Sbjct: 98 LASLKSIREFAAKIIEEEERVDILINNAGVMRCPHWTTED--GFEMQFGVNHLGHFLLT- 154
Query: 671 NVCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDT 850
N+ + L P R++N+SS V + I ++L K+ +T
Sbjct: 155 NLLLDKLKASAP-SRIINLSSLAHV---------------AGHIDFDDLNWQTRKY--NT 196
Query: 851 KNGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMA--- 1021
K AY +K+ + ++ ++LS + G + +NA PG RT++
Sbjct: 197 K-----------AAYCQSKLAIV----LFTKELSRRLQGSGVTVNALHPGVARTELGRHT 241
Query: 1022 ------------GP---KAPKSPEEGAETPVYLALLP--SDAEGPHGQFVSEK 1129
GP KSPE A+ YLA+ +D G + + +K
Sbjct: 242 GIHGSTFSSTTLGPIFWLLVKSPELAAQPSTYLAVAEELADVSGKYFDGLKQK 294
>ref|NP_653284.2| dehydrogenase/reductase SDR family member 13 precursor [Homo
sapiens].
Length = 377
Score = 59.7 bits (143), Expect = 6e-09
Identities = 71/272 (26%), Positives = 110/272 (40%), Gaps = 21/272 (7%)
Frame = +2
Query: 329 RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPR--FHQLD 502
R AVVTG N GIG +L ++ V+L R RG+AA L+ E + F LD
Sbjct: 37 RTAVVTGANSGIGKMTALELARR-GARVVLACRSQERGEAAAFDLRQESGNNEVIFMALD 95
Query: 503 IDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRNVCT 682
+ L S++A L L++L++NAGI+ F++ ++ N +G +
Sbjct: 96 LASLASVRAFATAFLSSEPRLDILIHNAGISSCGRTREAFNL----LLRVNHIGPFLLTH 151
Query: 683 ELLPLIK--PQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTKN 856
LLP +K RVV V+S +C L K +
Sbjct: 152 LLLPCLKACAPSRVVVVASAA------HCRGRLDFKRLDRPVV----------------- 188
Query: 857 GVHKKEGWPS--TAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAGPK 1030
GW AY TK+ + ++AR+L+ Q + A PG V +++
Sbjct: 189 ------GWRQELRAYADTKLA----NVLFARELANQLEATGVTCYAAHPGPVNSELFLRH 238
Query: 1031 AP---------------KSPEEGAETPVYLAL 1081
P ++P GA+TP+Y AL
Sbjct: 239 VPGWLRPLLRPLAWLVLRAPRGGAQTPLYCAL 270
>ref|NP_057330.2| 17-beta-hydroxysteroid dehydrogenase 14 [Homo sapiens].
Length = 270
Score = 54.3 bits (129), Expect = 2e-07
Identities = 44/137 (32%), Positives = 65/137 (47%), Gaps = 2/137 (1%)
Frame = +2
Query: 329 RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFHQLDID 508
+V VVTGG +GIG IVR V++ +D + G+A Q+L F D+
Sbjct: 10 KVVVVTGGGRGIGAGIVRAFVNS-GARVVICDKDESGGRALEQELP----GAVFILCDVT 64
Query: 509 DLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQA-EVTMKTNFLGTRNVCTE 685
++ L ++ +G L+ +VNNAG P Q ++ N LGT +
Sbjct: 65 QEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKL 124
Query: 686 LLP-LIKPQGRVVNVSS 733
LP L K QG V+N+SS
Sbjct: 125 ALPYLRKSQGNVINISS 141
>ref|NP_060911.2| peroxisomal trans-2-enoyl-CoA reductase [Homo sapiens].
Length = 303
Score = 52.0 bits (123), Expect = 1e-06
Identities = 45/144 (31%), Positives = 74/144 (51%), Gaps = 11/144 (7%)
Frame = +2
Query: 329 RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH----- 493
+VA+VTGG GIG AIV++L + +V++ +R + R ++A +LQA L P
Sbjct: 19 QVAIVTGGATGIGKAIVKELL-ELGSNVVIASRKLERLKSAADELQA-NLPPTKQARVIP 76
Query: 494 -QLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAE---VTMKTNFL 661
Q +I + + L L +G +N LVNN G F + P HI ++ ++TN
Sbjct: 77 IQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQF--LSPAE-HISSKGWHAVLETNLT 133
Query: 662 GTRNVCTELLP--LIKPQGRVVNV 727
GT +C + + + G +VN+
Sbjct: 134 GTFYMCKAVYSSWMKEHGGSIVNI 157
>ref|NP_057457.1| WW domain-containing oxidoreductase isoform 1 [Homo sapiens].
Length = 414
Score = 49.7 bits (117), Expect = 6e-06
Identities = 76/276 (27%), Positives = 111/276 (40%), Gaps = 13/276 (4%)
Frame = +2
Query: 329 RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH--QLD 502
+V VVTG N GIG + V+L R++AR AV ++ E + LD
Sbjct: 125 KVVVVTGANSGIGFETAKSFALH-GAHVILACRNMARASEAVSRILEEWHKAKVEAMTLD 183
Query: 503 IDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRNVCT 682
+ LRS+Q + + L+VLV NA T + E T + N LG +
Sbjct: 184 LALLRSVQHFAEAFKAKNVPLHVLVCNAATFALPWSLTKDGL--ETTFQVNHLGHFYLVQ 241
Query: 683 ELLPLI--KPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTKN 856
L ++ RV+ VSS ES R T + L L + TKN
Sbjct: 242 LLQDVLCRSAPARVIVVSS-ESHRF---------------TDINDSLGKLDFSRLSPTKN 285
Query: 857 GVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQ-------RAGDKILLNACCPGWVRTD 1015
+ W AY +K+ + S R+LS + G+ + N WV T
Sbjct: 286 -----DYWAMLAYNRSKLCNILFSNELHRRLSPRGVTSNAVHPGNMMYSNIHRSWWVYTL 340
Query: 1016 MAGPKAP--KSPEEGAETPVYLALLPSDAEGPHGQF 1117
+ P KS ++GA T VY A +P + EG G +
Sbjct: 341 LFTLARPFTKSMQQGAATTVYCAAVP-ELEGLGGMY 375
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 52,724,071
Number of extensions: 1479097
Number of successful extensions: 5930
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 5907
Number of HSP's successfully gapped: 10
Length of query: 442
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 336
Effective length of database: 14,802,980
Effective search space: 4973801280
Effective search space used: 4973801280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001812
(1328 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031646.2| carbonyl reductase [NADPH] 1 [Mus musculus]. 456 e-128
Alignment gi|XP_359206.3| PREDICTED: carbonyl reductase [NADPH] 1-like [M... 438 e-123
Alignment gi|NP_766635.1| carbonyl reductase 3 [Mus musculus]. 407 e-113
Alignment gi|XP_003086079.1| PREDICTED: carbonyl reductase [NADPH] 1-like... 352 4e-97
Alignment gi|XP_003085160.1| PREDICTED: carbonyl reductase [NADPH] 1-like... 141 1e-33
Alignment gi|NP_076186.1| retinol dehydrogenase 14 [Mus musculus]. 70 3e-12
Alignment gi|NP_780581.1| retinol dehydrogenase 13 [Mus musculus]. 69 6e-12
Alignment gi|NP_067532.2| retinol dehydrogenase 11 [Mus musculus]. 67 4e-11
Alignment gi|NP_084293.1| retinol dehydrogenase 12 [Mus musculus]. 65 9e-11
Alignment gi|NP_001028498.2| dehydrogenase/reductase SDR family member on... 64 3e-10
>ref|NP_031646.2| carbonyl reductase [NADPH] 1 [Mus musculus].
Length = 277
Score = 456 bits (1174), Expect = e-128
Identities = 229/274 (83%), Positives = 247/274 (90%)
Frame = +2
Query: 314 MSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH 493
MSS+ VA+VTG NKGIG AI RDLC++FSGDV+L ARD RGQ AVQ+LQAEGLSPRFH
Sbjct: 1 MSSSRPVALVTGANKGIGFAITRDLCRKFSGDVVLAARDEERGQTAVQKLQAEGLSPRFH 60
Query: 494 QLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRN 673
QLDID+ +SI+ALRDFLLKEYGGL+VLVNNAGIAFK D TPFHIQAEVTMKTNF GTR+
Sbjct: 61 QLDIDNPQSIRALRDFLLKEYGGLDVLVNNAGIAFKVNDDTPFHIQAEVTMKTNFFGTRD 120
Query: 674 VCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTK 853
VC ELLPLIKPQGRVVNVSS S+RAL NC ELQQKF+SETITEEELVGLMNKFVEDTK
Sbjct: 121 VCKELLPLIKPQGRVVNVSSMVSLRALKNCRLELQQKFRSETITEEELVGLMNKFVEDTK 180
Query: 854 NGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAGPKA 1033
GVH +EGWP++AYGVTKIGVTVLSRI ARKL+EQR GDKILLNACCPGWVRTDMAGPKA
Sbjct: 181 KGVHAEEGWPNSAYGVTKIGVTVLSRILARKLNEQRRGDKILLNACCPGWVRTDMAGPKA 240
Query: 1034 PKSPEEGAETPVYLALLPSDAEGPHGQFVSEKKV 1135
KSPEEGAETPVYLALLP DAEGPHGQFV +KKV
Sbjct: 241 TKSPEEGAETPVYLALLPPDAEGPHGQFVQDKKV 274
>ref|XP_359206.3| PREDICTED: carbonyl reductase [NADPH] 1-like [Mus musculus].
Length = 277
Score = 438 bits (1126), Expect = e-123
Identities = 221/274 (80%), Positives = 240/274 (87%)
Frame = +2
Query: 314 MSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH 493
M S R+A+VTG NKGIG AI RDLCQQFSGDV+LTARD ARG AAVQ+LQAEGL PRFH
Sbjct: 1 MPSCSRIALVTGANKGIGFAITRDLCQQFSGDVVLTARDEARGLAAVQKLQAEGLIPRFH 60
Query: 494 QLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRN 673
QLDI+D +SI ALR+FLLKEYGGL+VLVNNAGIA+K D T FHI E MKTNF GT+
Sbjct: 61 QLDINDPQSIHALRNFLLKEYGGLDVLVNNAGIAYKGTDLTHFHILREAAMKTNFFGTQA 120
Query: 674 VCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTK 853
VCTELLPLIK QGRVVN+SS S+ AL NCS ELQQKF+SETITEEELVGLMNKFVEDTK
Sbjct: 121 VCTELLPLIKTQGRVVNISSLISLEALKNCSLELQQKFRSETITEEELVGLMNKFVEDTK 180
Query: 854 NGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAGPKA 1033
GVH KEGWP++AYGV+KIGVTVLSRI ARKL+EQR GDKILLNACCPGWVRTDMAGP+A
Sbjct: 181 KGVHAKEGWPNSAYGVSKIGVTVLSRILARKLNEQRRGDKILLNACCPGWVRTDMAGPQA 240
Query: 1034 PKSPEEGAETPVYLALLPSDAEGPHGQFVSEKKV 1135
KSPEEGAETPVYLALLP DAEGPHGQFV +KKV
Sbjct: 241 TKSPEEGAETPVYLALLPPDAEGPHGQFVQDKKV 274
>ref|NP_766635.1| carbonyl reductase 3 [Mus musculus].
Length = 277
Score = 407 bits (1045), Expect = e-113
Identities = 199/274 (72%), Positives = 234/274 (85%)
Frame = +2
Query: 314 MSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH 493
MSS RVA+VTG NKGIG AI RDLC++FSGDV+LTARD ARG+AAVQQLQAEGLSPRFH
Sbjct: 1 MSSCSRVALVTGANKGIGFAITRDLCRKFSGDVVLTARDEARGRAAVQQLQAEGLSPRFH 60
Query: 494 QLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRN 673
QLDIDD +SI+ALRDFL KEYGGLNVLVNNAGIAF+ DPTPF IQAEVT+KTNF TRN
Sbjct: 61 QLDIDDPQSIRALRDFLRKEYGGLNVLVNNAGIAFRMDDPTPFDIQAEVTLKTNFFATRN 120
Query: 674 VCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTK 853
VCTELLP++KP GRVVN+SS + ++AL NC +LQ+KF+ +T+TE +LV LM KFVEDTK
Sbjct: 121 VCTELLPIMKPHGRVVNISSLQGLKALENCREDLQEKFRCDTLTEVDLVDLMKKFVEDTK 180
Query: 854 NGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAGPKA 1033
N VH++EGWP +AYGV+K+GVTVL+RI AR+L E+R D+ILLNACCPGWV+TDMA +
Sbjct: 181 NEVHEREGWPDSAYGVSKLGVTVLTRILARQLDEKRKADRILLNACCPGWVKTDMARDQG 240
Query: 1034 PKSPEEGAETPVYLALLPSDAEGPHGQFVSEKKV 1135
++ EEGAETPVYLALLP DA PHGQ V +K V
Sbjct: 241 SRTVEEGAETPVYLALLPPDATEPHGQLVRDKVV 274
>ref|XP_003086079.1| PREDICTED: carbonyl reductase [NADPH] 1-like, partial [Mus musculus].
Length = 218
Score = 352 bits (903), Expect = 4e-97
Identities = 174/214 (81%), Positives = 190/214 (88%)
Frame = +2
Query: 494 QLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRN 673
QLDIDD +SI ALRDFLLKEY GL+VLVNNAGIAFK DPTPFHI+ EVTMKTNF GTR+
Sbjct: 2 QLDIDDPQSIHALRDFLLKEYKGLDVLVNNAGIAFKVDDPTPFHIKGEVTMKTNFFGTRD 61
Query: 674 VCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTK 853
VC E+LPLIKPQGRVVNVSS S+ AL +CSPELQQKF+SETITEEELVGLMNK+VED K
Sbjct: 62 VCKEMLPLIKPQGRVVNVSSMVSLSALKDCSPELQQKFRSETITEEELVGLMNKYVEDAK 121
Query: 854 NGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAGPKA 1033
GV+ KE WP++AY V+KIGVTVLSRI ARKL+EQR GDKILLNACCPGWVRTDM GP+A
Sbjct: 122 KGVYVKEDWPNSAYEVSKIGVTVLSRILARKLNEQRRGDKILLNACCPGWVRTDMTGPQA 181
Query: 1034 PKSPEEGAETPVYLALLPSDAEGPHGQFVSEKKV 1135
KSPEEGAETPVYLALLP DAEGPHGQFV +K V
Sbjct: 182 TKSPEEGAETPVYLALLPPDAEGPHGQFVQDKTV 215
>ref|XP_003085160.1| PREDICTED: carbonyl reductase [NADPH] 1-like [Mus musculus].
Length = 149
Score = 141 bits (355), Expect = 1e-33
Identities = 73/93 (78%), Positives = 81/93 (87%)
Frame = +2
Query: 314 MSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH 493
M S R+A+VTG NKGIG AI RDLC+QFSGDV+LTARD ARG AAVQ+LQAEGLSPRFH
Sbjct: 1 MPSCSRIALVTGANKGIGFAITRDLCRQFSGDVVLTARDEARGLAAVQKLQAEGLSPRFH 60
Query: 494 QLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGI 592
QLDI+D + I AL DFLLKEYGGL+VLVNNAGI
Sbjct: 61 QLDINDPQRICALCDFLLKEYGGLDVLVNNAGI 93
>ref|NP_076186.1| retinol dehydrogenase 14 [Mus musculus].
Length = 334
Score = 70.5 bits (171), Expect = 3e-12
Identities = 89/300 (29%), Positives = 132/300 (44%), Gaps = 32/300 (10%)
Frame = +2
Query: 329 RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQL-----QAEGLSPR-- 487
+ ++TG N G+G A +L + V++ RD AR + A QL QA G P
Sbjct: 45 KTVLITGANSGLGRATAAELLR-LGARVIMGCRDRARAEEAAGQLRQELCQAGGAGPDGT 103
Query: 488 -----FHQLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAF----KTVDPTPFHIQAEV 640
+LD+ LRS++A LL+E L+VL+NNAG+ KT D F +Q V
Sbjct: 104 DGQLVVKELDLASLRSVRAFCQELLQEEPRLDVLINNAGVFHCPYTKTED--GFEMQFGV 161
Query: 641 TMKTNFLGTRNVCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELV 820
+FL T N+ LL P R+V VSS + +K I E+L
Sbjct: 162 NHLGHFLLT-NLLLGLLKSSAP-SRIVVVSS---------------KLYKYGEINFEDL- 203
Query: 821 GLMNKFVEDTKNGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPG 1000
+++ +K S Y +K+ + +R AR+L G + +N PG
Sbjct: 204 --------NSEQSYNK-----SFCYSRSKLANILFTRELARRLE----GTNVTVNVLHPG 246
Query: 1001 WVRTD---------MAGPKAP-------KSPEEGAETPVYLALLPSDAEGPHGQFVSEKK 1132
VRT+ +A P K+P EGA+T +YLA P D EG G++ + K
Sbjct: 247 IVRTNLGRHIHIPLLARPLFNLVSWAFFKTPLEGAQTSIYLACSP-DVEGVSGRYFGDCK 305
>ref|NP_780581.1| retinol dehydrogenase 13 [Mus musculus].
Length = 334
Score = 69.3 bits (168), Expect = 6e-12
Identities = 77/275 (28%), Positives = 125/275 (45%), Gaps = 24/275 (8%)
Frame = +2
Query: 329 RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH--QLD 502
+ +VTG N GIG +L ++ G+V+L RD+ + + A + ++ E L+PR +LD
Sbjct: 39 KTVIVTGANTGIGKQTALELAKR-GGNVILACRDMEKCEVAAKDIRGETLNPRVRAERLD 97
Query: 503 IDDLRSIQALRDFLLKEYGGLNVLVNNAGIA----FKTVDPTPFHIQAEVTMKTNFLGTR 670
+ L+SI+ ++KE +++LVNNA + + T D F +Q V +FL T
Sbjct: 98 LASLKSIREFARKVIKEEERVDILVNNAAVMRCPHWTTED--GFEMQFGVNYLGHFLLT- 154
Query: 671 NVCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDT 850
N+ + L P R++N+SS V + I E+L M K+ DT
Sbjct: 155 NLLLDKLKASAP-SRIINLSSLAHV---------------AGHIDFEDLNWQMKKY--DT 196
Query: 851 KNGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTD----- 1015
K AY +K+ V ++ ++LS + G + +NA PG RT+
Sbjct: 197 K-----------AAYCQSKLAVV----LFTKELSHRLQGSGVTVNALHPGVARTELGRHT 241
Query: 1016 ----------MAGP---KAPKSPEEGAETPVYLAL 1081
M GP KSP+ A+ YLA+
Sbjct: 242 GMHNSAFSGFMLGPFFWLLFKSPQLAAQPSTYLAV 276
>ref|NP_067532.2| retinol dehydrogenase 11 [Mus musculus].
Length = 316
Score = 66.6 bits (161), Expect = 4e-11
Identities = 54/143 (37%), Positives = 75/143 (52%), Gaps = 8/143 (5%)
Frame = +2
Query: 329 RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQA-EGLSPRF-HQLD 502
+VA+VTG N GIG +DL Q+ V L RDV +G+ A +++QA G S F +LD
Sbjct: 39 KVAIVTGANTGIGKETAKDLAQR-GARVYLACRDVDKGELAAREIQAVTGNSQVFVRKLD 97
Query: 503 IDDLRSIQALRDFLLKEYGGLNVLVNNAGIAF----KTVDPTPFHIQAEVTMKTNFLGTR 670
+ D +SI+A L E L++L+NNAG+ KT D HI N LG
Sbjct: 98 LADTKSIRAFAKDFLAEEKHLHLLINNAGVMMCPYSKTADGFEMHI------GVNHLGHF 151
Query: 671 NVCTELLPLIKPQ--GRVVNVSS 733
+ LL +K R+VN+SS
Sbjct: 152 LLTHLLLEKLKESAPSRIVNLSS 174
>ref|NP_084293.1| retinol dehydrogenase 12 [Mus musculus].
Length = 316
Score = 65.5 bits (158), Expect = 9e-11
Identities = 75/288 (26%), Positives = 127/288 (44%), Gaps = 20/288 (6%)
Frame = +2
Query: 329 RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRF--HQLD 502
+V V+TG N GIG R+L ++ V + RDV +G++A +++A+ + + +LD
Sbjct: 40 KVVVITGANTGIGKETARELARR-GARVYIACRDVLKGESAASEIRADTKNSQVLVRKLD 98
Query: 503 IDDLRSIQALRDFLLKEYGGLNVLVNNAGIAF----KTVDPTPFHIQAEVTMKTNFLGTR 670
+ D +SI+A + L E L++L+NNAG+ KT D H N LG
Sbjct: 99 LSDTKSIRAFAERFLAEEKKLHILINNAGVMMCPYSKTTDGFETH------FGVNHLGHF 152
Query: 671 NVCTELLPLIKPQ--GRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVE 844
+ LL +K RVVN+SS + L+ K
Sbjct: 153 LLTYLLLERLKESAPARVVNLSS---------------------------IAHLIGKIRF 185
Query: 845 DTKNGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAG 1024
G +K + AYG +K+ + ++ R+L+++ G + A PG V +++
Sbjct: 186 HDLQG--QKRYCSAFAYGHSKLA----NLLFTRELAKRLQGTGVTAYAVHPGVVLSEITR 239
Query: 1025 PK----------AP--KSPEEGAETPVYLALLPSDAEGPHGQFVSEKK 1132
+P KS +GA+T ++ A L D E G++ S+ K
Sbjct: 240 NSYLLCLLWRLFSPFFKSTSQGAQTSLHCA-LAEDLEPLSGKYFSDCK 286
>ref|NP_001028498.2| dehydrogenase/reductase SDR family member on chromosome X homolog
precursor [Mus musculus].
Length = 335
Score = 63.9 bits (154), Expect = 3e-10
Identities = 81/291 (27%), Positives = 122/291 (41%), Gaps = 24/291 (8%)
Frame = +2
Query: 329 RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFHQLDID 508
RVA+VTG GIG + R L + V++ D GQ V ++AE S R H L +
Sbjct: 44 RVAIVTGATAGIGRSTARQLA-RLGMCVVVAGNDEHCGQEVVSSIRAEMGSDRAHFLPL- 101
Query: 509 DLRSIQALRDFL--LKEYG-GLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRNVC 679
DL S+ ++R F + G L++LVNNAG+ + T + + NFLG +
Sbjct: 102 DLASLASVRGFARDFRALGLPLHLLVNNAGVMLEPRAETEDGFERH--LGVNFLGHFLLT 159
Query: 680 TELLPLIKPQG------RVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFV 841
LLP ++ G RVV V S VG ++
Sbjct: 160 LLLLPALRASGAEGRGSRVVTVGSA------------------------THYVGTVD--- 192
Query: 842 EDTKNGVHKKEGW-PSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDM 1018
+H + + P AY +K+ + + + R L + GD + N PG V T++
Sbjct: 193 ---MADLHGRHAYSPYAAYAQSKLALALFALQLQRILDAR--GDPVTSNMADPGVVDTEL 247
Query: 1019 --------------AGPKAPKSPEEGAETPVYLALLPSDAEGPHGQFVSEK 1129
G KSPEEGA T VY A P + EG G+++ ++
Sbjct: 248 YRHAGWVLRTVKRFLGWLVFKSPEEGAWTLVYAAAAP-ELEGVGGRYLRDE 297
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 44,615,514
Number of extensions: 1236343
Number of successful extensions: 4751
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 4722
Number of HSP's successfully gapped: 14
Length of query: 442
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 338
Effective length of database: 12,493,815
Effective search space: 4222909470
Effective search space used: 4222909470
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001812
(1328 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003358992.1| PREDICTED: carbonyl reductase [NADPH] 1-like... 544 e-155
Alignment gi|NP_999238.1| carbonyl reductase [NADPH] 1 [Sus scrofa]. 483 e-137
Alignment gi|XP_003132810.1| PREDICTED: carbonyl reductase [NADPH] 3-like... 407 e-114
Alignment gi|XP_003361992.1| PREDICTED: carbonyl reductase [NADPH] 1-like... 299 2e-81
Alignment gi|XP_003125388.1| PREDICTED: retinol dehydrogenase 14-like [Su... 66 5e-11
Alignment gi|NP_001230331.1| retinol dehydrogenase 12 [Sus scrofa]. 64 2e-10
Alignment gi|XP_003125042.1| PREDICTED: retinol dehydrogenase 12-like [Su... 63 4e-10
Alignment gi|XP_001928802.1| PREDICTED: retinol dehydrogenase 11 [Sus scr... 62 9e-10
Alignment gi|XP_003126302.1| PREDICTED: 11-cis retinol dehydrogenase-like... 50 2e-06
>ref|XP_003358992.1| PREDICTED: carbonyl reductase [NADPH] 1-like [Sus scrofa].
Length = 281
Score = 544 bits (1401), Expect = e-155
Identities = 273/274 (99%), Positives = 273/274 (99%)
Frame = +2
Query: 314 MSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH 493
MSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH
Sbjct: 1 MSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH 60
Query: 494 QLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRN 673
QLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRN
Sbjct: 61 QLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRN 120
Query: 674 VCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTK 853
VCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTK
Sbjct: 121 VCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTK 180
Query: 854 NGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAGPKA 1033
NGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAGPKA
Sbjct: 181 NGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAGPKA 240
Query: 1034 PKSPEEGAETPVYLALLPSDAEGPHGQFVSEKKV 1135
PKSPEEGAETP YLALLPSDAEGPHGQFVSEKKV
Sbjct: 241 PKSPEEGAETPAYLALLPSDAEGPHGQFVSEKKV 274
>ref|NP_999238.1| carbonyl reductase [NADPH] 1 [Sus scrofa].
Length = 289
Score = 483 bits (1244), Expect = e-137
Identities = 240/274 (87%), Positives = 257/274 (93%)
Frame = +2
Query: 314 MSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH 493
MSSN RVA+VTG NKGIG AIVRDLC+QF+GDV+LTARDVARGQAAV+QLQAEGLSPRFH
Sbjct: 1 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 60
Query: 494 QLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRN 673
QLDI DL+SI+AL DFL KEYGGL+VLVNNA IAF+ +PTPFHIQAE+TMKTNF+GTRN
Sbjct: 61 QLDIIDLQSIRALCDFLRKEYGGLDVLVNNAAIAFQLDNPTPFHIQAELTMKTNFMGTRN 120
Query: 674 VCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTK 853
VCTELLPLIKPQGRVVNVSSTE VRALN CSPELQQKFKSETITEEELVGLMNKFVEDTK
Sbjct: 121 VCTELLPLIKPQGRVVNVSSTEGVRALNECSPELQQKFKSETITEEELVGLMNKFVEDTK 180
Query: 854 NGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAGPKA 1033
NGVH+KEGW + YGVTKIGV+VLSRIYARKL EQRAGDKILLNACCPGWVRTDM GPKA
Sbjct: 181 NGVHRKEGWSDSTYGVTKIGVSVLSRIYARKLREQRAGDKILLNACCPGWVRTDMGGPKA 240
Query: 1034 PKSPEEGAETPVYLALLPSDAEGPHGQFVSEKKV 1135
PKSPE GAETPVYLALLPSDAEGPHGQFV++KKV
Sbjct: 241 PKSPEVGAETPVYLALLPSDAEGPHGQFVTDKKV 274
>ref|XP_003132810.1| PREDICTED: carbonyl reductase [NADPH] 3-like [Sus scrofa].
Length = 277
Score = 407 bits (1046), Expect = e-114
Identities = 201/276 (72%), Positives = 233/276 (84%)
Frame = +2
Query: 314 MSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFH 493
MSS RVA+VTG NKGIG AI RDLC+QFSGDV+LT+RD ARG+AAVQQLQAEGLSPRFH
Sbjct: 1 MSSYTRVALVTGANKGIGFAIARDLCRQFSGDVVLTSRDAARGRAAVQQLQAEGLSPRFH 60
Query: 494 QLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRN 673
QLDIDDL+SI+ALRDFL KEYGGLNVLVNNAGIAFK DPTPF IQAE+T+KTNF GTRN
Sbjct: 61 QLDIDDLQSIRALRDFLRKEYGGLNVLVNNAGIAFKIDDPTPFDIQAEMTLKTNFFGTRN 120
Query: 674 VCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEEELVGLMNKFVEDTK 853
VC ELLP+IKP GRVVN+SS +AL NCS +LQ+KF+ E +TEE+LV LM KFVED K
Sbjct: 121 VCIELLPIIKPHGRVVNISSLLGSKALENCSEDLQEKFRCEALTEEDLVDLMKKFVEDAK 180
Query: 854 NGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNACCPGWVRTDMAGPKA 1033
N VH++EGWPS+AYGV+K+GVTVLSRI A++L E+R D+ILLNACCPGWV+TDM G +
Sbjct: 181 NEVHEREGWPSSAYGVSKLGVTVLSRILAQRLDEKRKADRILLNACCPGWVKTDMTGGQG 240
Query: 1034 PKSPEEGAETPVYLALLPSDAEGPHGQFVSEKKV*N 1141
++ EEGA TPVYLALLP DA P GQ V +K + N
Sbjct: 241 FETVEEGAVTPVYLALLPPDATEPQGQLVRDKVIQN 276
>ref|XP_003361992.1| PREDICTED: carbonyl reductase [NADPH] 1-like, partial [Sus scrofa].
Length = 154
Score = 299 bits (766), Expect = 2e-81
Identities = 151/152 (99%), Positives = 151/152 (99%)
Frame = +2
Query: 347 GGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRFHQLDIDDLRSIQ 526
GGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQA VQQLQAEGLSPRFHQLDIDDLRSIQ
Sbjct: 1 GGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAGVQQLQAEGLSPRFHQLDIDDLRSIQ 60
Query: 527 ALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRNVCTELLPLIKP 706
ALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRNVCTELLPLIKP
Sbjct: 61 ALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRNVCTELLPLIKP 120
Query: 707 QGRVVNVSSTESVRALNNCSPELQQKFKSETI 802
QGRVVNVSSTESVRALNNCSPELQQKFKSETI
Sbjct: 121 QGRVVNVSSTESVRALNNCSPELQQKFKSETI 152
>ref|XP_003125388.1| PREDICTED: retinol dehydrogenase 14-like [Sus scrofa].
Length = 336
Score = 65.9 bits (159), Expect = 5e-11
Identities = 87/303 (28%), Positives = 130/303 (42%), Gaps = 35/303 (11%)
Frame = +2
Query: 329 RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQL-----QAEGLSPR-- 487
+ ++TG N G+G A +L + V++ RD AR + A QL Q EG
Sbjct: 44 KTVLITGANSGLGRATAAELLR-LGARVIMGCRDRARAEEAAGQLRRELRQTEGPEEGPN 102
Query: 488 --------FHQLDIDDLRSIQALRDFLLKEYGGLNVLVNNAGI----AFKTVDPTPFHIQ 631
+LD+ LRS++A +L+E L+VL+NNAGI KT D F +Q
Sbjct: 103 SGGAGELVVRELDLASLRSVRAFCQEMLQEEPRLDVLINNAGIFQCPYMKTED--GFEMQ 160
Query: 632 AEVTMKTNFLGTRNVCTELLPLIKPQGRVVNVSSTESVRALNNCSPELQQKFKSETITEE 811
V +FL T N+ LL P R+V VSS + +K I E
Sbjct: 161 FAVNHLGHFLLT-NLLLGLLKSSAP-SRIVVVSS---------------KLYKYGDINFE 203
Query: 812 ELVGLMNKFVEDTKNGVHKKEGWPSTAYGVTKIGVTVLSRIYARKLSEQRAGDKILLNAC 991
+L +++ +K S Y +K+ + +R AR+L G + +N
Sbjct: 204 DL---------NSEQSYNK-----SFCYSRSKLANILFTRELARRLE----GTNVTVNVL 245
Query: 992 CPGWVRTDMAGP-KAP---------------KSPEEGAETPVYLALLPSDAEGPHGQFVS 1123
PG VRT++ P K+P EGA+T VYLA P + EG G++
Sbjct: 246 HPGIVRTNLGRHIHIPLLVRPLFNLVSWAFFKTPAEGAQTSVYLASSP-EVEGVSGKYFG 304
Query: 1124 EKK 1132
+ K
Sbjct: 305 DCK 307
>ref|NP_001230331.1| retinol dehydrogenase 12 [Sus scrofa].
Length = 316
Score = 63.5 bits (153), Expect = 2e-10
Identities = 47/143 (32%), Positives = 75/143 (52%), Gaps = 8/143 (5%)
Frame = +2
Query: 329 RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRF--HQLD 502
+V V+TG N GIG R+L ++ V + RDV +G++A +++A+ + + +LD
Sbjct: 40 KVVVITGANTGIGKETARELARR-GARVYIACRDVLKGESAASEIRADTKNSQVLVRKLD 98
Query: 503 IDDLRSIQALRDFLLKEYGGLNVLVNNAGIAF----KTVDPTPFHIQAEVTMKTNFLGTR 670
+ D +SI+A + L E L++L+NNAG+ KT D H + N LG
Sbjct: 99 LSDTKSIRAFAEGFLTEEKQLHILINNAGVMLCPYSKTADGFETH------LGVNHLGHF 152
Query: 671 NVCTELLPLIKPQ--GRVVNVSS 733
+ LL +K RVVN+SS
Sbjct: 153 LLTHLLLEQLKASAPARVVNLSS 175
>ref|XP_003125042.1| PREDICTED: retinol dehydrogenase 12-like [Sus scrofa].
Length = 181
Score = 62.8 bits (151), Expect = 4e-10
Identities = 45/133 (33%), Positives = 74/133 (55%), Gaps = 2/133 (1%)
Frame = +2
Query: 329 RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSPRF--HQLD 502
+ AVVTG N GIG A+ ++L ++ V+L R RGQ A+ ++QA S R +D
Sbjct: 50 KTAVVTGANSGIGKAVSQELARR-GARVILACRSRERGQGALTEIQAATRSNRLLLGGVD 108
Query: 503 IDDLRSIQALRDFLLKEYGGLNVLVNNAGIAFKTVDPTPFHIQAEVTMKTNFLGTRNVCT 682
+ + SI++ +LL+E +++LVNNAG++ TP + ++T TN++G + T
Sbjct: 109 LSSMASIRSFVQWLLRESPEIHLLVNNAGVSGFPRTRTPEGL--DLTFATNYIGP-FLLT 165
Query: 683 ELLPLIKPQGRVV 721
LL Q R +
Sbjct: 166 NLLQAYGNQARAM 178
>ref|XP_001928802.1| PREDICTED: retinol dehydrogenase 11 [Sus scrofa].
Length = 316
Score = 61.6 bits (148), Expect = 9e-10
Identities = 50/143 (34%), Positives = 71/143 (49%), Gaps = 8/143 (5%)
Frame = +2
Query: 329 RVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQ--AEGLSPRFHQLD 502
+VAVVTG N GIG ++L ++ V L RDV +G++ +++Q +LD
Sbjct: 40 KVAVVTGANTGIGKETAKELAKR-GARVYLACRDVQKGESVAREIQNMTGNQQVLVRKLD 98
Query: 503 IDDLRSIQALRDFLLKEYGGLNVLVNNAGIAF----KTVDPTPFHIQAEVTMKTNFLGTR 670
+ D +SI+A L E L++L+NNAG+ KT D H M N LG
Sbjct: 99 LADTKSIRAFAKGFLAEEKHLHILINNAGVMMCPYSKTADGFETH------MGVNHLGHF 152
Query: 671 NVCTELLPLIKPQ--GRVVNVSS 733
+ LL +K RVVNVSS
Sbjct: 153 LLTHLLLEKLKESAPSRVVNVSS 175
>ref|XP_003126302.1| PREDICTED: 11-cis retinol dehydrogenase-like [Sus scrofa].
Length = 318
Score = 50.4 bits (119), Expect = 2e-06
Identities = 51/156 (32%), Positives = 76/156 (48%), Gaps = 5/156 (3%)
Frame = +2
Query: 305 LPTMSSNIRVAVVTGGNKGIGLAIVRDLCQQFSGDVMLTARDVARGQAAVQQLQAEGLSP 484
LPT + + +TG + G G + L Q+ G +L + G +Q++ + L
Sbjct: 24 LPTSDAFV---FITGCDSGFGRLLALRLDQR--GFRVLASCLTPSGAEDLQRVASSRLHT 78
Query: 485 RFHQLDIDDLRSIQALRDFLLKEYG--GLNVLVNNAGIAFKTVDPTPFHIQAEV--TMKT 652
LD+ D +SIQ ++ G GL LVNNAG+A + PTP+ + + +
Sbjct: 79 TL--LDVTDPQSIQRAAKWVETHVGEAGLFGLVNNAGVA-GIIGPTPWQTREDFQQVLNV 135
Query: 653 NFLGTRNVCTELLPLIK-PQGRVVNVSSTESVRALN 757
N LG V LLPL++ +GRVVNVSS A N
Sbjct: 136 NTLGPIGVTLALLPLLRQARGRVVNVSSVLGRLAAN 171
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,653,350
Number of extensions: 984440
Number of successful extensions: 3947
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 3918
Number of HSP's successfully gapped: 9
Length of query: 442
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 340
Effective length of database: 8,804,438
Effective search space: 2993508920
Effective search space used: 2993508920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001812
(1328 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 1193 0.0
gb|GL896154.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 650 0.0
gb|GL896228.1| Sus scrofa unplaced genomic scaffold chrU_scaffold59 159 5e-36
>Sscrofa_Chr13
|| Length = 218635234
Score = 1193 bits (602), Expect = 0.0
Identities = 602/602 (100%)
Strand = Plus / Plus
Query: 1 tgattctctgctgtcaggcacgcggtcgctgggcaacggctcttcagcggacagctctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209751971 tgattctctgctgtcaggcacgcggtcgctgggcaacggctcttcagcggacagctctcc 209752030
Query: 61 aaaccaaccccagcgccccttctctactttcccttcagccctagagcggcatcctggagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209752031 aaaccaaccccagcgccccttctctactttcccttcagccctagagcggcatcctggagc 209752090
Query: 121 caggccctcagcaggtggggcccgcgcctttgcactcagcccggaggctcgcggcgagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209752091 caggccctcagcaggtggggcccgcgcctttgcactcagcccggaggctcgcggcgagag 209752150
Query: 181 tgctgctagtgggcacccaacccattctgcgtcgcatcggctgccagcattgcgcagacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209752151 tgctgctagtgggcacccaacccattctgcgtcgcatcggctgccagcattgcgcagacc 209752210
Query: 241 ttcggcctcgcgtttgggagaaaccagacccatccgctgtccgtgcagaggcaccgctgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209752211 ttcggcctcgcgtttgggagaaaccagacccatccgctgtccgtgcagaggcaccgctgc 209752270
Query: 301 cccgctcccgaccatgtcgtccaacattcgcgtggcggtggtgaccggcggcaacaaggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209752271 cccgctcccgaccatgtcgtccaacattcgcgtggcggtggtgaccggcggcaacaaggg 209752330
Query: 361 catcggcctcgccatcgtgcgtgatctgtgccagcagttctcgggggatgtgatgcttac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209752331 catcggcctcgccatcgtgcgtgatctgtgccagcagttctcgggggatgtgatgcttac 209752390
Query: 421 ggcgcgggacgtggcgagaggccaggcggcggtgcagcagctgcaggctgagggtctgag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209752391 ggcgcgggacgtggcgagaggccaggcggcggtgcagcagctgcaggctgagggtctgag 209752450
Query: 481 cccgcgcttccaccagctggatatcgacgaccttcggagcatccaggccctgcgcgactt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209752451 cccgcgcttccaccagctggatatcgacgaccttcggagcatccaggccctgcgcgactt 209752510
Query: 541 cctgctcaaggagtatgggggactcaacgtgctggtcaataacgcgggcatcgctttcaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209752511 cctgctcaaggagtatgggggactcaacgtgctggtcaataacgcgggcatcgctttcaa 209752570
Query: 601 aa 602
||
Sbjct: 209752571 aa 209752572
Score = 912 bits (460), Expect = 0.0
Identities = 505/520 (97%), Gaps = 2/520 (0%)
Strand = Plus / Plus
Query: 709 aggcagagtggtgaatgtgtctagcactgagagtgtcagagctcttaacaactgcagtcc 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209757372 aggcagagtggtgaatgtgtctagcactgagagtgtcagagctcttaacaactgcagtcc 209757431
Query: 769 tgaactgcaacagaagttcaagagtgagaccatcacagaggaagagctggtggggctcat 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209757432 tgaactgcaacagaagttcaagagtgagaccatcacagaggaagagctggtggggctcat 209757491
Query: 829 gaacaagtttgtggaagacacaaagaacggagtccataagaaggaaggctggccaagtac 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209757492 gaacaagtttgtggaagacacaaagaacggagtccataagaaggaaggctggccaagtac 209757551
Query: 889 cgcgtacggagtgacaaaaatcggggtcactgtactctccaggatctatgccaggaaact 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209757552 cgcgtacggagtgacaaaaatcggggtcactgtactctccaggatctatgccaggaaact 209757611
Query: 949 gagtgagcagagagcaggggacaagatcctcctgaatgcctgctgcccagggtgggtgag 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209757612 gagtgagcagagagcaggggacaagatcctcctgaatgcctgctgcccagggtgggtgag 209757671
Query: 1009 aactgacatggctggacccaaagcccccaagagcccagaggaaggagcagagacccccgt 1068
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209757672 aactgacatggctggacccaaagcccccaagagcccagaggaaggagcagagacccccgc 209757731
Query: 1069 gtacctggcccttttaccctcagatgcagaggggcctcacggtcagtttgtttctgnnnn 1128
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 209757732 gtacctggcccttttgccctcagatgcagaggggcctcacggtcagtttgtttctgagaa 209757791
Query: 1129 nnnng-tgtaaaatggggtgttcccccttagagctacccctgggtcaatgcataatttgt 1187
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209757792 aaaagttgtagaatggggtgttcccccttagagctacccctgggtcaatgcataatttgt 209757851
Query: 1188 gtcctgatttc-cccaaaggatacttaccctatcaaaaat 1226
||||||||||| || ||||||||||||| |||||||||||
Sbjct: 209757852 gtcctgatttcaccaaaaggatacttacactatcaaaaat 209757891
Score = 345 bits (174), Expect = 4e-92
Identities = 264/294 (89%)
Strand = Plus / Plus
Query: 307 cccgaccatgtcgtccaacattcgcgtggcggtggtgaccggcggcaacaagggcatcgg 366
|||| ||||||||||| ||| ||||||||| ||||||| |||| |||||||||||||||
Sbjct: 209843004 cccggccatgtcgtcctacacccgcgtggcgttggtgactggcgccaacaagggcatcgg 209843063
Query: 367 cctcgccatcgtgcgtgatctgtgccagcagttctcgggggatgtgatgcttacggcgcg 426
| ||||||||| |||||||||||||| ||||||||||||||||||| |||| || ||||
Sbjct: 209843064 cttcgccatcgcgcgtgatctgtgccggcagttctcgggggatgtggtgctcacctcgcg 209843123
Query: 427 ggacgtggcgagaggccaggcggcggtgcagcagctgcaggctgagggtctgagcccgcg 486
||||| || | |||| |||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 209843124 ggacgctgctcggggccgggcggcggtgcagcagctgcaggccgagggcctgagcccgcg 209843183
Query: 487 cttccaccagctggatatcgacgaccttcggagcatccaggccctgcgcgacttcctgct 546
|||||||||||||| ||||||||||| | |||||||| |||||||||||||||||||
Sbjct: 209843184 tttccaccagctggacatcgacgacctgcagagcatccgcgccctgcgcgacttcctgcg 209843243
Query: 547 caaggagtatgggggactcaacgtgctggtcaataacgcgggcatcgctttcaa 600
||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 209843244 caaggagtatgggggactcaacgtgctggtcaacaacgcgggcatcgctttcaa 209843297
Score = 216 bits (109), Expect = 2e-53
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 603 ctgttgatcccacaccgtttcatattcaagcagaagtaactatgaaaacaaacttcttgg 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209753085 ctgttgatcccacaccgtttcatattcaagcagaagtaactatgaaaacaaacttcttgg 209753144
Query: 663 gaacccgaaatgtatgcacagagctcctgcctctgataaaaccccaagg 711
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209753145 gaacccgaaatgtatgcacagagctcctgcctctgataaaaccccaagg 209753193
>gb|GL896154.1| Sus scrofa unplaced genomic scaffold chrU_scaffold522
Length = 37204
Score = 650 bits (328), Expect = 0.0
Identities = 328/328 (100%)
Strand = Plus / Plus
Query: 1 tgattctctgctgtcaggcacgcggtcgctgggcaacggctcttcagcggacagctctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14309 tgattctctgctgtcaggcacgcggtcgctgggcaacggctcttcagcggacagctctcc 14368
Query: 61 aaaccaaccccagcgccccttctctactttcccttcagccctagagcggcatcctggagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14369 aaaccaaccccagcgccccttctctactttcccttcagccctagagcggcatcctggagc 14428
Query: 121 caggccctcagcaggtggggcccgcgcctttgcactcagcccggaggctcgcggcgagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14429 caggccctcagcaggtggggcccgcgcctttgcactcagcccggaggctcgcggcgagag 14488
Query: 181 tgctgctagtgggcacccaacccattctgcgtcgcatcggctgccagcattgcgcagacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14489 tgctgctagtgggcacccaacccattctgcgtcgcatcggctgccagcattgcgcagacc 14548
Query: 241 ttcggcctcgcgtttgggagaaaccagacccatccgctgtccgtgcagaggcaccgctgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14549 ttcggcctcgcgtttgggagaaaccagacccatccgctgtccgtgcagaggcaccgctgc 14608
Query: 301 cccgctcccgaccatgtcgtccaacatt 328
||||||||||||||||||||||||||||
Sbjct: 14609 cccgctcccgaccatgtcgtccaacatt 14636
Score = 494 bits (249), Expect = e-137
Identities = 255/257 (99%)
Strand = Plus / Plus
Query: 346 cggcggcaacaagggcatcggcctcgccatcgtgcgtgatctgtgccagcagttctcggg 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14737 cggcggcaacaagggcatcggcctcgccatcgtgcgtgatctgtgccagcagttctcggg 14796
Query: 406 ggatgtgatgcttacggcgcgggacgtggcgagaggccaggcggcggtgcagcagctgca 465
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 14797 ggatgtgatgcttacggcgcgggacgtggcgagaggccaggctggggtgcagcagctgca 14856
Query: 466 ggctgagggtctgagcccgcgcttccaccagctggatatcgacgaccttcggagcatcca 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14857 ggctgagggtctgagcccgcgcttccaccagctggatatcgacgaccttcggagcatcca 14916
Query: 526 ggccctgcgcgacttcctgctcaaggagtatgggggactcaacgtgctggtcaataacgc 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14917 ggccctgcgcgacttcctgctcaaggagtatgggggactcaacgtgctggtcaataacgc 14976
Query: 586 gggcatcgctttcaaaa 602
|||||||||||||||||
Sbjct: 14977 gggcatcgctttcaaaa 14993
Score = 216 bits (109), Expect = 2e-53
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 603 ctgttgatcccacaccgtttcatattcaagcagaagtaactatgaaaacaaacttcttgg 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15584 ctgttgatcccacaccgtttcatattcaagcagaagtaactatgaaaacaaacttcttgg 15643
Query: 663 gaacccgaaatgtatgcacagagctcctgcctctgataaaaccccaagg 711
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15644 gaacccgaaatgtatgcacagagctcctgcctctgataaaaccccaagg 15692
Score = 188 bits (95), Expect = 5e-45
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 709 aggcagagtggtgaatgtgtctagcactgagagtgtcagagctcttaacaactgcagtcc 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19860 aggcagagtggtgaatgtgtctagcactgagagtgtcagagctcttaacaactgcagtcc 19919
Query: 769 tgaactgcaacagaagttcaagagtgagaccatca 803
|||||||||||||||||||||||||||||||||||
Sbjct: 19920 tgaactgcaacagaagttcaagagtgagaccatca 19954
Score = 141 bits (71), Expect = 1e-30
Identities = 95/103 (92%)
Strand = Plus / Plus
Query: 609 atcccacaccgtttcatattcaagcagaagtaactatgaaaacaaacttcttgggaaccc 668
|||||||||||||||||||||| |||||| | |||||||||||||||||| |||||||||
Sbjct: 30512 atcccacaccgtttcatattcaggcagaactgactatgaaaacaaacttcatgggaaccc 30571
Query: 669 gaaatgtatgcacagagctcctgcctctgataaaaccccaagg 711
||||||| ||||||||||| |||||||| |||||||| |||||
Sbjct: 30572 gaaatgtgtgcacagagcttctgcctctaataaaacctcaagg 30614
Score = 87.7 bits (44), Expect = 1e-14
Identities = 47/48 (97%)
Strand = Plus / Plus
Query: 1134 tgtaaaatggggtgttcccccttagagctacccctgggtcaatgcata 1181
|||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19958 tgtagaatggggtgttcccccttagagctacccctgggtcaatgcata 20005
Score = 83.8 bits (42), Expect = 2e-13
Identities = 84/98 (85%)
Strand = Plus / Plus
Query: 404 ggggatgtgatgcttacggcgcgggacgtggcgagaggccaggcggcggtgcagcagctg 463
||||| ||| |||| || ||| |||||||||| |||||||||| || ||| |||| |||
Sbjct: 29790 ggggacgtggtgctcacagcgagggacgtggcacgaggccaggcagccgtgaagcaactg 29849
Query: 464 caggctgagggtctgagcccgcgcttccaccagctgga 501
|| || ||||| ||||||||||||||||||||||||||
Sbjct: 29850 caagccgagggcctgagcccgcgcttccaccagctgga 29887
>gb|GL896228.1| Sus scrofa unplaced genomic scaffold chrU_scaffold59
Length = 122
Score = 159 bits (80), Expect = 5e-36
Identities = 92/96 (95%)
Strand = Plus / Plus
Query: 1025 cccaaagcccccaagagcccagaggaaggagcagagacccccgtgtacctggccctttta 1084
||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 1 cccaaagcccccaagagcccagaggtaggagcagagacccccgtgtacttggcccttttg 60
Query: 1085 ccctcagatgcagaggggcctcacggtcagtttgtt 1120
||||||||||||||||||||||| ||||||||||||
Sbjct: 61 ccctcagatgcagaggggcctcatggtcagtttgtt 96
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,455,347
Number of extensions: 213
Number of successful extensions: 213
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 13
Length of query: 1328
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1307
Effective length of database: 2,808,413,156
Effective search space: 3670595994892
Effective search space used: 3670595994892
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)