Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001821
(1704 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001038186.1| citrate synthase, mitochondrial precursor [B... 913 0.0
>ref|NP_001038186.1| citrate synthase, mitochondrial precursor [Bos taurus].
Length = 466
Score = 913 bits (2360), Expect = 0.0
Identities = 449/466 (96%), Positives = 457/466 (98%)
Frame = +1
Query: 226 MALLTAAARLFGAKNASCLVLAARHASASSTNLKDILADLIPKEQARIKTFRQQHGNTVV 405
MALLTAAARLFGAKNASCLVLAARHASASSTNLKDILADLIPKEQ R+K FRQQHG TVV
Sbjct: 1 MALLTAAARLFGAKNASCLVLAARHASASSTNLKDILADLIPKEQTRVKAFRQQHGKTVV 60
Query: 406 GQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLF 585
GQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQK+LPKAKGGEEPLPEGLF
Sbjct: 61 GQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQKLLPKAKGGEEPLPEGLF 120
Query: 586 WLLVTGQIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESN 765
WLLVTGQIPTEEQVSWLS+EWAKRAALPSHVVTMLDNFPTNLHPMSQLSAA+TALNSES
Sbjct: 121 WLLVTGQIPTEEQVSWLSQEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAVTALNSEST 180
Query: 766 FARAYAEGIHRTKYWELIYEDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNF 945
FARAY+EGI+RTKYWELIYED MDLIAKLPCVAAKIYRNLYREGSSIGAID KLDWSHNF
Sbjct: 181 FARAYSEGINRTKYWELIYEDSMDLIAKLPCVAAKIYRNLYREGSSIGAIDPKLDWSHNF 240
Query: 946 TNMLGYTDAQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPL 1125
TNMLGYTDAQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPL
Sbjct: 241 TNMLGYTDAQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPL 300
Query: 1126 HGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQ 1305
HGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQ
Sbjct: 301 HGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQ 360
Query: 1306 REFALKHLPHDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYY 1485
REFALKHLP DPMFKLVAQLYKIVPN+LLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYY
Sbjct: 361 REFALKHLPQDPMFKLVAQLYKIVPNILLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYY 420
Query: 1486 TVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTDGLIKLVDSK*G 1623
TVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTDGL+K VDSK G
Sbjct: 421 TVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTDGLMKFVDSKSG 466
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 66,118,802
Number of extensions: 1879715
Number of successful extensions: 9153
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9020
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 460
Effective length of database: 14,107,870
Effective search space: 6489620200
Effective search space used: 6489620200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001821
(1704 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531634.2| PREDICTED: similar to citrate synthase [Canis f... 929 0.0
>ref|XP_531634.2| PREDICTED: similar to citrate synthase [Canis familiaris].
Length = 466
Score = 929 bits (2400), Expect = 0.0
Identities = 459/466 (98%), Positives = 462/466 (99%)
Frame = +1
Query: 226 MALLTAAARLFGAKNASCLVLAARHASASSTNLKDILADLIPKEQARIKTFRQQHGNTVV 405
MALLTAAARLFGAKNASCLVLAARHASASSTNLKDILADLIPKEQARIKTFRQQHG TVV
Sbjct: 1 MALLTAAARLFGAKNASCLVLAARHASASSTNLKDILADLIPKEQARIKTFRQQHGKTVV 60
Query: 406 GQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLF 585
GQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQK+LPKAKGGEEPLPEGLF
Sbjct: 61 GQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQKLLPKAKGGEEPLPEGLF 120
Query: 586 WLLVTGQIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESN 765
WLLVTGQIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESN
Sbjct: 121 WLLVTGQIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESN 180
Query: 766 FARAYAEGIHRTKYWELIYEDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNF 945
FARAYAEGI+RTKYWELIYEDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNF
Sbjct: 181 FARAYAEGINRTKYWELIYEDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNF 240
Query: 946 TNMLGYTDAQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPL 1125
TNMLGYTDAQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPL
Sbjct: 241 TNMLGYTDAQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPL 300
Query: 1126 HGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQ 1305
HGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQ
Sbjct: 301 HGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQ 360
Query: 1306 REFALKHLPHDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYY 1485
REFALKHLPHD MFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYY
Sbjct: 361 REFALKHLPHDSMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYY 420
Query: 1486 TVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTDGLIKLVDSK*G 1623
TVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTDGL+K VDSK G
Sbjct: 421 TVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTDGLMKFVDSKSG 466
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 68,661,071
Number of extensions: 1918750
Number of successful extensions: 9479
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9366
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 460
Effective length of database: 15,274,216
Effective search space: 7026139360
Effective search space used: 7026139360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001821
(1704 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004068.2| citrate synthase, mitochondrial precursor [Homo... 906 0.0
>ref|NP_004068.2| citrate synthase, mitochondrial precursor [Homo sapiens].
Length = 466
Score = 906 bits (2341), Expect = 0.0
Identities = 447/466 (95%), Positives = 454/466 (97%)
Frame = +1
Query: 226 MALLTAAARLFGAKNASCLVLAARHASASSTNLKDILADLIPKEQARIKTFRQQHGNTVV 405
MALLTAAARL G KNASCLVLAARHASASSTNLKDILADLIPKEQARIKTFRQQHG TVV
Sbjct: 1 MALLTAAARLLGTKNASCLVLAARHASASSTNLKDILADLIPKEQARIKTFRQQHGKTVV 60
Query: 406 GQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLF 585
GQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRG+SIPECQK+LPKAKGGEEPLPEGLF
Sbjct: 61 GQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGFSIPECQKLLPKAKGGEEPLPEGLF 120
Query: 586 WLLVTGQIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESN 765
WLLVTG IPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAA+TALNSESN
Sbjct: 121 WLLVTGHIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAVTALNSESN 180
Query: 766 FARAYAEGIHRTKYWELIYEDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNF 945
FARAYA+GI RTKYWELIYED MDLIAKLPCVAAKIYRNLYREGS IGAIDS LDWSHNF
Sbjct: 181 FARAYAQGISRTKYWELIYEDSMDLIAKLPCVAAKIYRNLYREGSGIGAIDSNLDWSHNF 240
Query: 946 TNMLGYTDAQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPL 1125
TNMLGYTD QFTEL RLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPL
Sbjct: 241 TNMLGYTDHQFTELTRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPL 300
Query: 1126 HGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQ 1305
HGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQ
Sbjct: 301 HGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQ 360
Query: 1306 REFALKHLPHDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYY 1485
REFALKHLP+DPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYY
Sbjct: 361 REFALKHLPNDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYY 420
Query: 1486 TVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTDGLIKLVDSK*G 1623
TVLFGVSRALGVLAQLIWSRALGFPLERPKSMST+GL+K VDSK G
Sbjct: 421 TVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTEGLMKFVDSKSG 466
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 67,717,599
Number of extensions: 1910680
Number of successful extensions: 9234
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9083
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 460
Effective length of database: 14,737,052
Effective search space: 6779043920
Effective search space used: 6779043920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001821
(1704 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080720.1| citrate synthase, mitochondrial precursor [Mus ... 909 0.0
Alignment gi|NP_082221.2| citrate synthase-like protein [Mus musculus]. 860 0.0
>ref|NP_080720.1| citrate synthase, mitochondrial precursor [Mus musculus].
Length = 464
Score = 909 bits (2348), Expect = 0.0
Identities = 444/464 (95%), Positives = 457/464 (98%)
Frame = +1
Query: 226 MALLTAAARLFGAKNASCLVLAARHASASSTNLKDILADLIPKEQARIKTFRQQHGNTVV 405
MALLTAA RL GAKN+SCLVLAARHASASSTNLKD+L++LIPKEQARIKTF+QQHG TVV
Sbjct: 1 MALLTAATRLLGAKNSSCLVLAARHASASSTNLKDVLSNLIPKEQARIKTFKQQHGKTVV 60
Query: 406 GQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLF 585
GQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLF
Sbjct: 61 GQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLF 120
Query: 586 WLLVTGQIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESN 765
WLLVTGQ+PTEEQVSWLS+EWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESN
Sbjct: 121 WLLVTGQMPTEEQVSWLSREWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESN 180
Query: 766 FARAYAEGIHRTKYWELIYEDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNF 945
FARAYAEG++R KYWELIYEDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDS+LDWSHNF
Sbjct: 181 FARAYAEGMNRAKYWELIYEDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSRLDWSHNF 240
Query: 946 TNMLGYTDAQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPL 1125
TNMLGYTD QFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPL
Sbjct: 241 TNMLGYTDPQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPL 300
Query: 1126 HGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQ 1305
HGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRY+CQ
Sbjct: 301 HGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYSCQ 360
Query: 1306 REFALKHLPHDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYY 1485
REFALKHLP DPMFKLVAQLYKIVPN+LLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYY
Sbjct: 361 REFALKHLPKDPMFKLVAQLYKIVPNILLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYY 420
Query: 1486 TVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTDGLIKLVDSK 1617
TVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTDGL+K VDSK
Sbjct: 421 TVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTDGLMKFVDSK 464
>ref|NP_082221.2| citrate synthase-like protein [Mus musculus].
Length = 466
Score = 860 bits (2222), Expect = 0.0
Identities = 418/466 (89%), Positives = 443/466 (95%)
Frame = +1
Query: 226 MALLTAAARLFGAKNASCLVLAARHASASSTNLKDILADLIPKEQARIKTFRQQHGNTVV 405
MALLTAAA G KN CLVLAARHASASSTNLKD+L +LIPKEQARIKTFR++HG TVV
Sbjct: 1 MALLTAAAWFLGTKNPPCLVLAARHASASSTNLKDVLRNLIPKEQARIKTFRKKHGKTVV 60
Query: 406 GQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLF 585
GQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQK+LPKAKGG+EPLPEGLF
Sbjct: 61 GQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQKLLPKAKGGKEPLPEGLF 120
Query: 586 WLLVTGQIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESN 765
WLLVTGQ+PTEEQVSWLS+EW KRAALPSHVVTMLDNFPT LHPMSQLSAAIT LN+ESN
Sbjct: 121 WLLVTGQMPTEEQVSWLSQEWVKRAALPSHVVTMLDNFPTKLHPMSQLSAAITVLNNESN 180
Query: 766 FARAYAEGIHRTKYWELIYEDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNF 945
FARAYA+G++RTKYWEL YEDCMDL+AKLPCVAAKIYRNLYRE +I AIDSKLDWSHNF
Sbjct: 181 FARAYAQGMNRTKYWELTYEDCMDLLAKLPCVAAKIYRNLYREDRNIEAIDSKLDWSHNF 240
Query: 946 TNMLGYTDAQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPL 1125
TNMLGYTD QFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAA+NGLAGPL
Sbjct: 241 TNMLGYTDPQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAALNGLAGPL 300
Query: 1126 HGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQ 1305
HGLANQEVLVWLTQLQKEVG+D SDEKL++YIWNTLNSGRVVPGYGHAVLRKTDPRY+CQ
Sbjct: 301 HGLANQEVLVWLTQLQKEVGEDASDEKLKNYIWNTLNSGRVVPGYGHAVLRKTDPRYSCQ 360
Query: 1306 REFALKHLPHDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYY 1485
REFALKHLP DPMFKLV QLYKIVP++LLEQGKAKNPWPNVDAHSGVLLQYYGM EMNYY
Sbjct: 361 REFALKHLPKDPMFKLVGQLYKIVPDILLEQGKAKNPWPNVDAHSGVLLQYYGMREMNYY 420
Query: 1486 TVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTDGLIKLVDSK*G 1623
TVLFGVSRALGVL+QLIWSRALGFPLERPKSMSTD L+K V+S+ G
Sbjct: 421 TVLFGVSRALGVLSQLIWSRALGFPLERPKSMSTDALMKFVNSESG 466
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 57,573,969
Number of extensions: 1612175
Number of successful extensions: 7689
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7550
Number of HSP's successfully gapped: 2
Length of query: 568
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 461
Effective length of database: 12,403,707
Effective search space: 5718108927
Effective search space used: 5718108927
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001821
(1704 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999441.1| citrate synthase, mitochondrial precursor [Sus ... 940 0.0
Alignment gi|XP_003355512.1| PREDICTED: citrate synthase, mitochondrial-l... 549 e-156
Alignment gi|XP_003355511.1| PREDICTED: citrate synthase, mitochondrial-l... 272 5e-73
Alignment gi|XP_003355514.1| PREDICTED: hypothetical protein LOC100621942... 67 4e-11
>ref|NP_999441.1| citrate synthase, mitochondrial precursor [Sus scrofa].
Length = 464
Score = 940 bits (2429), Expect = 0.0
Identities = 464/464 (100%), Positives = 464/464 (100%)
Frame = +1
Query: 226 MALLTAAARLFGAKNASCLVLAARHASASSTNLKDILADLIPKEQARIKTFRQQHGNTVV 405
MALLTAAARLFGAKNASCLVLAARHASASSTNLKDILADLIPKEQARIKTFRQQHGNTVV
Sbjct: 1 MALLTAAARLFGAKNASCLVLAARHASASSTNLKDILADLIPKEQARIKTFRQQHGNTVV 60
Query: 406 GQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLF 585
GQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLF
Sbjct: 61 GQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLF 120
Query: 586 WLLVTGQIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESN 765
WLLVTGQIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESN
Sbjct: 121 WLLVTGQIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESN 180
Query: 766 FARAYAEGIHRTKYWELIYEDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNF 945
FARAYAEGIHRTKYWELIYEDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNF
Sbjct: 181 FARAYAEGIHRTKYWELIYEDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNF 240
Query: 946 TNMLGYTDAQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPL 1125
TNMLGYTDAQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPL
Sbjct: 241 TNMLGYTDAQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPL 300
Query: 1126 HGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQ 1305
HGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQ
Sbjct: 301 HGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQ 360
Query: 1306 REFALKHLPHDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYY 1485
REFALKHLPHDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYY
Sbjct: 361 REFALKHLPHDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYY 420
Query: 1486 TVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTDGLIKLVDSK 1617
TVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTDGLIKLVDSK
Sbjct: 421 TVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTDGLIKLVDSK 464
>ref|XP_003355512.1| PREDICTED: citrate synthase, mitochondrial-like [Sus scrofa].
Length = 279
Score = 549 bits (1415), Expect = e-156
Identities = 269/275 (97%), Positives = 271/275 (98%)
Frame = +1
Query: 793 HRTKYWELIYEDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNFTNMLGYTDA 972
+R + LIYEDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNFTNMLGYTDA
Sbjct: 5 NRKTEFMLIYEDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNFTNMLGYTDA 64
Query: 973 QFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVL 1152
QFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVL
Sbjct: 65 QFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVL 124
Query: 1153 VWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLP 1332
VWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLP
Sbjct: 125 VWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLP 184
Query: 1333 HDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRA 1512
HDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRA
Sbjct: 185 HDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRA 244
Query: 1513 LGVLAQLIWSRALGFPLERPKSMSTDGLIKLVDSK 1617
LGVLAQLIWSRALGFPLERPKSMSTDGLIKLVDSK
Sbjct: 245 LGVLAQLIWSRALGFPLERPKSMSTDGLIKLVDSK 279
>ref|XP_003355511.1| PREDICTED: citrate synthase, mitochondrial-like [Sus scrofa].
Length = 140
Score = 272 bits (695), Expect = 5e-73
Identities = 130/131 (99%), Positives = 131/131 (100%)
Frame = +1
Query: 424 MMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLFWLLVTG 603
MMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLFWLLVTG
Sbjct: 1 MMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLFWLLVTG 60
Query: 604 QIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYA 783
QIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYA
Sbjct: 61 QIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYA 120
Query: 784 EGIHRTKYWEL 816
EGIHRTKYWE+
Sbjct: 121 EGIHRTKYWEV 131
>ref|XP_003355514.1| PREDICTED: hypothetical protein LOC100621942 [Sus scrofa].
Length = 711
Score = 66.6 bits (161), Expect = 4e-11
Identities = 28/31 (90%), Positives = 30/31 (96%)
Frame = +3
Query: 183 LPSFPPRQISEFACHGLTHCGRPALRSQECI 275
LPSFPPRQISEFACHGLTHCGRPALRSQ+ +
Sbjct: 169 LPSFPPRQISEFACHGLTHCGRPALRSQDAL 199
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 42,590,592
Number of extensions: 1202889
Number of successful extensions: 6080
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5971
Number of HSP's successfully gapped: 4
Length of query: 568
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 464
Effective length of database: 8,754,644
Effective search space: 4062154816
Effective search space used: 4062154816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001821
(1704 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 2125 0.0
Sscrofa_Chr05 438 e-120
>Sscrofa_Chr13
|| Length = 218635234
Score = 2125 bits (1072), Expect = 0.0
Identities = 1404/1509 (93%), Gaps = 18/1509 (1%)
Strand = Plus / Plus
Query: 169 cctgccgcatttctcttccctccttccctccccgccagatctccgaattcgcctgccatg 228
|||||| || |||||||||| |||||||||||| |||||||||| ||||| | |||||
Sbjct: 87524162 cctgccacagttctcttcccgccttccctccccaccagatctccaaattccaccaccatg 87524221
Query: 229 gccttactcactgcggccgcccggctcttcggagccaagaatgcatcctgtcttgttctt 288
|| ||||| ||||| || |||| |||||| ||||||||||||||||||||| ||||||||
Sbjct: 87524222 gctttacttactgcagc-gcccagctctttggagccaagaatgcatcctgtattgttctt 87524280
Query: 289 gctgcccggcatgccagtgcttcttccacgaacttaaaagacattttggctgacctgata 348
|||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 87524281 gctgcctggcatgccagcgcttcttccacgaacttgaaagacattttggctgacctgata 87524340
Query: 349 cctaaggagcaagccagaattaagaccttcaggcagcaacacggcaacaccgtggtgggc 408
|||||||||||| ||||||||||||| ||||||| ||||| ||||| | |||||||||
Sbjct: 87524341 cctaaggagcaaaccagaattaagactttcaggcgtcaacatggcaagatggtggtgggc 87524400
Query: 409 caaatcactgtggacatgatgtatggtggcatgagaggcatgaagggattggtgtatgaa 468
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 87524401 caaatcactgtggacatgatgtatggtg-----agaggcatgaagggattggtgtatgaa 87524455
Query: 469 acatcggttcttgatcctgatgagggcatccgtttccgaggctacagtatccctgaatgc 528
|| | ||||||||||||||||||| ||||| ||||| ||||||||||| |||||||||||
Sbjct: 87524456 acgttggttcttgatcctgatgagagcatctgtttctgaggctacagtgtccctgaatgc 87524515
Query: 529 cagaaaatgctgcccaaggctaagggtggggaagaaccgctgccagagggcttattttgg 588
|||||| ||||||||||||||||||||||| ||||||| |||||||||||||| ||||||
Sbjct: 87524516 cagaaactgctgcccaaggctaagggtgggaaagaacccctgccagagggcttcttttgg 87524575
Query: 589 ctgctggtaactggacagatcccaacagaggagcaggtgtcttggctctcaaaagagtgg 648
|||||||||| |||||||||||||||||||| | ||||| |||| |||||||||||||||
Sbjct: 87524576 ctgctggtaattggacagatcccaacagaggggtaggtgacttgcctctcaaaagagtgg 87524635
Query: 649 gcaaagagggcagctctgccttcccatgtggtcaccatgctggacaactttcccacgaat 708
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 87524636 gcaaagagggcagctctgccttcccatgtggtcacc-tgctggacaactttcccatgaat 87524694
Query: 709 ctacaccccatgtctcagctcagtgcagccattacagccctcaacagtgaaagtaacttt 768
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 87524695 ctacaccccatgtctcagcttagtgcagccattacagccctcaacagtgaaagtaacttt 87524754
Query: 769 gcccgagcatatgcagagggtatccaccgaaccaagtactgggagttgatttatgaagac 828
|||||||||||||||| |||| ||| |||||| ||||||| |||||||||||||||||||
Sbjct: 87524755 gcccgagcatatgcagggggtgtcctccgaactaagtactaggagttgatttatgaagac 87524814
Query: 829 tgtatggatctgatcgcaaagctaccttgtgttgcagcaaagatctaccggaatctctac 888
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 87524815 tgtatggatctgatcacaaagctaccttgtgttgcagcaaagatctactggaatct--ac 87524872
Query: 889 cgggagggcagcagtattggggccattgattctaaactggactggtcccacaatttcacc 948
|| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 87524873 tggtagggcagcagtattagggccattgattctaagctggactggtcccacaatttcacg 87524932
Query: 949 aacatgttaggctatactgatgctcagttcacggagctcatgcgcttgtacctcaccatc 1008
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 87524933 aacatgttaggctatactgatgctcagttcacggagctcatgcccttgtacctcaccatc 87524992
Query: 1009 cacagtgaccatgaaggtggcaatgtaagtgctcataccagccatttggtgggcagtgcc 1068
|||||||||||||||||||||| | ||| |||| ||||||||||||||||||||||||||
Sbjct: 87524993 cacagtgaccatgaaggtggcagtctaaatgcttataccagccatttggtgggcagtgcc 87525052
Query: 1069 ctttcagacccctacttgtcctttgcagcagccatgaatgggctggcagggcccctacat 1128
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 87525053 ttttcagacccctacttgtcctttgcagcagccatgaatgggctgacagggcccttacat 87525112
Query: 1129 gggctggca----aatcaggaagtgcttgtttggctgacacagctgcagaaggaagtcgg 1184
|| |||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct: 87525113 ggactggcaggcaaatcaggaagtgcttgtttggctgacacagctacagaaagaagttgg 87525172
Query: 1185 caaagatgtgtcagatgagaagttacgagactacatctggaatacactcaactcaggacg 1244
||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 87525173 caaagatgtatcagatgagaagttatgagactacatctggaacacactcaactcaggaca 87525232
Query: 1245 ggttgtcccaggctatggccacgcagtactaaggaagactgatccacgatatacctgtca 1304
||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||
Sbjct: 87525233 ggttgtcccaggctatggccatgcagtactaaggaagactgatccacaagatacctgtca 87525292
Query: 1305 aa-gagagtttgctctgaaacacctgcctcatgaccccatgtttaagctggttgctcagc 1363
|| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 87525293 aaagagagtttgctctgaaacgcctgcctcatgaccccgtgtttaagctggttgctcagc 87525352
Query: 1364 tgtacaagattgtgcccaatgtcctcctggaacagggcaaggctaagaatccttggccca 1423
||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 87525353 tgtacgagattgtgcccaatgtcctcctggagcagggcaaggccaagaatccttggccca 87525412
Query: 1424 atgtggatgctcacagtggggtgctgctccagtactatggcatgacggagatgaactact 1483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87525413 atgtggatgctcacagtggggtgctgctccagtactatggcatgacggagatgaactact 87525472
Query: 1484 acacagtcctgttcggggtatcacgggcactgggtgtattagcacagctcatctggagcc 1543
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 87525473 acacagtcctgttcagggtatcacgggcactgggtgtattagcatagctcatctggagct 87525532
Query: 1544 gagccttaggcttccctctagagaggcccaagtccatgagcacagacggtctgataaaac 1603
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 87525533 gagccttaggcttccctctagagaggcccaagtccatgagcacagatggtctgatgaaat 87525592
Query: 1604 ttgtggactctaagtgagggtgaaactgaagactgggaagaaactaactaccagaaagtg 1663
||||||||||||||| |||||||||||||||||||||| || |||||||||||||||
Sbjct: 87525593 ttgtggactctaagtcagggtgaaactgaagactgggagga----aactaccagaaagtg 87525648
Query: 1664 agggatctt 1672
|||||||||
Sbjct: 87525649 agggatctt 87525657
>Sscrofa_Chr05
|| Length = 111506441
Score = 438 bits (221), Expect = e-120
Identities = 221/221 (100%)
Strand = Plus / Minus
Query: 1453 cagtactatggcatgacggagatgaactactacacagtcctgttcggggtatcacgggca 1512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23162694 cagtactatggcatgacggagatgaactactacacagtcctgttcggggtatcacgggca 23162635
Query: 1513 ctgggtgtattagcacagctcatctggagccgagccttaggcttccctctagagaggccc 1572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23162634 ctgggtgtattagcacagctcatctggagccgagccttaggcttccctctagagaggccc 23162575
Query: 1573 aagtccatgagcacagacggtctgataaaacttgtggactctaagtgagggtgaaactga 1632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23162574 aagtccatgagcacagacggtctgataaaacttgtggactctaagtgagggtgaaactga 23162515
Query: 1633 agactgggaagaaactaactaccagaaagtgagggatcttt 1673
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 23162514 agactgggaagaaactaactaccagaaagtgagggatcttt 23162474
Score = 438 bits (221), Expect = e-120
Identities = 221/221 (100%)
Strand = Plus / Plus
Query: 1453 cagtactatggcatgacggagatgaactactacacagtcctgttcggggtatcacgggca 1512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23172384 cagtactatggcatgacggagatgaactactacacagtcctgttcggggtatcacgggca 23172443
Query: 1513 ctgggtgtattagcacagctcatctggagccgagccttaggcttccctctagagaggccc 1572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23172444 ctgggtgtattagcacagctcatctggagccgagccttaggcttccctctagagaggccc 23172503
Query: 1573 aagtccatgagcacagacggtctgataaaacttgtggactctaagtgagggtgaaactga 1632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23172504 aagtccatgagcacagacggtctgataaaacttgtggactctaagtgagggtgaaactga 23172563
Query: 1633 agactgggaagaaactaactaccagaaagtgagggatcttt 1673
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 23172564 agactgggaagaaactaactaccagaaagtgagggatcttt 23172604
Score = 418 bits (211), Expect = e-114
Identities = 211/211 (100%)
Strand = Plus / Minus
Query: 1245 ggttgtcccaggctatggccacgcagtactaaggaagactgatccacgatatacctgtca 1304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23163224 ggttgtcccaggctatggccacgcagtactaaggaagactgatccacgatatacctgtca 23163165
Query: 1305 aagagagtttgctctgaaacacctgcctcatgaccccatgtttaagctggttgctcagct 1364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23163164 aagagagtttgctctgaaacacctgcctcatgaccccatgtttaagctggttgctcagct 23163105
Query: 1365 gtacaagattgtgcccaatgtcctcctggaacagggcaaggctaagaatccttggcccaa 1424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23163104 gtacaagattgtgcccaatgtcctcctggaacagggcaaggctaagaatccttggcccaa 23163045
Query: 1425 tgtggatgctcacagtggggtgctgctccag 1455
|||||||||||||||||||||||||||||||
Sbjct: 23163044 tgtggatgctcacagtggggtgctgctccag 23163014
Score = 418 bits (211), Expect = e-114
Identities = 211/211 (100%)
Strand = Plus / Plus
Query: 1245 ggttgtcccaggctatggccacgcagtactaaggaagactgatccacgatatacctgtca 1304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23171854 ggttgtcccaggctatggccacgcagtactaaggaagactgatccacgatatacctgtca 23171913
Query: 1305 aagagagtttgctctgaaacacctgcctcatgaccccatgtttaagctggttgctcagct 1364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23171914 aagagagtttgctctgaaacacctgcctcatgaccccatgtttaagctggttgctcagct 23171973
Query: 1365 gtacaagattgtgcccaatgtcctcctggaacagggcaaggctaagaatccttggcccaa 1424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23171974 gtacaagattgtgcccaatgtcctcctggaacagggcaaggctaagaatccttggcccaa 23172033
Query: 1425 tgtggatgctcacagtggggtgctgctccag 1455
|||||||||||||||||||||||||||||||
Sbjct: 23172034 tgtggatgctcacagtggggtgctgctccag 23172064
Score = 400 bits (202), Expect = e-108
Identities = 202/202 (100%)
Strand = Plus / Minus
Query: 812 agttgatttatgaagactgtatggatctgatcgcaaagctaccttgtgttgcagcaaaga 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23164935 agttgatttatgaagactgtatggatctgatcgcaaagctaccttgtgttgcagcaaaga 23164876
Query: 872 tctaccggaatctctaccgggagggcagcagtattggggccattgattctaaactggact 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23164875 tctaccggaatctctaccgggagggcagcagtattggggccattgattctaaactggact 23164816
Query: 932 ggtcccacaatttcaccaacatgttaggctatactgatgctcagttcacggagctcatgc 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23164815 ggtcccacaatttcaccaacatgttaggctatactgatgctcagttcacggagctcatgc 23164756
Query: 992 gcttgtacctcaccatccacag 1013
||||||||||||||||||||||
Sbjct: 23164755 gcttgtacctcaccatccacag 23164734
Score = 381 bits (192), Expect = e-103
Identities = 192/192 (100%)
Strand = Plus / Minus
Query: 622 caggtgtcttggctctcaaaagagtgggcaaagagggcagctctgccttcccatgtggtc 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23083501 caggtgtcttggctctcaaaagagtgggcaaagagggcagctctgccttcccatgtggtc 23083442
Query: 682 accatgctggacaactttcccacgaatctacaccccatgtctcagctcagtgcagccatt 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23083441 accatgctggacaactttcccacgaatctacaccccatgtctcagctcagtgcagccatt 23083382
Query: 742 acagccctcaacagtgaaagtaactttgcccgagcatatgcagagggtatccaccgaacc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23083381 acagccctcaacagtgaaagtaactttgcccgagcatatgcagagggtatccaccgaacc 23083322
Query: 802 aagtactgggag 813
||||||||||||
Sbjct: 23083321 aagtactgggag 23083310
Score = 272 bits (137), Expect = 6e-70
Identities = 137/137 (100%)
Strand = Plus / Minus
Query: 1008 ccacagtgaccatgaaggtggcaatgtaagtgctcataccagccatttggtgggcagtgc 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23163908 ccacagtgaccatgaaggtggcaatgtaagtgctcataccagccatttggtgggcagtgc 23163849
Query: 1068 cctttcagacccctacttgtcctttgcagcagccatgaatgggctggcagggcccctaca 1127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23163848 cctttcagacccctacttgtcctttgcagcagccatgaatgggctggcagggcccctaca 23163789
Query: 1128 tgggctggcaaatcagg 1144
|||||||||||||||||
Sbjct: 23163788 tgggctggcaaatcagg 23163772
Score = 270 bits (136), Expect = 2e-69
Identities = 136/136 (100%)
Strand = Plus / Minus
Query: 491 agggcatccgtttccgaggctacagtatccctgaatgccagaaaatgctgcccaaggcta 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23083866 agggcatccgtttccgaggctacagtatccctgaatgccagaaaatgctgcccaaggcta 23083807
Query: 551 agggtggggaagaaccgctgccagagggcttattttggctgctggtaactggacagatcc 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23083806 agggtggggaagaaccgctgccagagggcttattttggctgctggtaactggacagatcc 23083747
Query: 611 caacagaggagcaggt 626
||||||||||||||||
Sbjct: 23083746 caacagaggagcaggt 23083731
Score = 216 bits (109), Expect = 3e-53
Identities = 109/109 (100%)
Strand = Plus / Minus
Query: 318 gaacttaaaagacattttggctgacctgatacctaaggagcaagccagaattaagacctt 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23085470 gaacttaaaagacattttggctgacctgatacctaaggagcaagccagaattaagacctt 23085411
Query: 378 caggcagcaacacggcaacaccgtggtgggccaaatcactgtggacatg 426
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23085410 caggcagcaacacggcaacaccgtggtgggccaaatcactgtggacatg 23085362
Score = 212 bits (107), Expect = 5e-52
Identities = 107/107 (100%)
Strand = Plus / Minus
Query: 1141 caggaagtgcttgtttggctgacacagctgcagaaggaagtcggcaaagatgtgtcagat 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23163673 caggaagtgcttgtttggctgacacagctgcagaaggaagtcggcaaagatgtgtcagat 23163614
Query: 1201 gagaagttacgagactacatctggaatacactcaactcaggacgggt 1247
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23163613 gagaagttacgagactacatctggaatacactcaactcaggacgggt 23163567
Score = 212 bits (107), Expect = 5e-52
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 1141 caggaagtgcttgtttggctgacacagctgcagaaggaagtcggcaaagatgtgtcagat 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23171404 caggaagtgcttgtttggctgacacagctgcagaaggaagtcggcaaagatgtgtcagat 23171463
Query: 1201 gagaagttacgagactacatctggaatacactcaactcaggacgggt 1247
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23171464 gagaagttacgagactacatctggaatacactcaactcaggacgggt 23171510
Score = 135 bits (68), Expect = 9e-29
Identities = 68/68 (100%)
Strand = Plus / Minus
Query: 426 gatgtatggtggcatgagaggcatgaagggattggtgtatgaaacatcggttcttgatcc 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23084476 gatgtatggtggcatgagaggcatgaagggattggtgtatgaaacatcggttcttgatcc 23084417
Query: 486 tgatgagg 493
||||||||
Sbjct: 23084416 tgatgagg 23084409
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 45,387,768
Number of extensions: 425
Number of successful extensions: 425
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 418
Number of HSP's successfully gapped: 14
Length of query: 1704
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1682
Effective length of database: 2,808,408,574
Effective search space: 4723743221468
Effective search space used: 4723743221468
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)