Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001824
(1356 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001038186.1| citrate synthase, mitochondrial precursor [B... 674 0.0
>ref|NP_001038186.1| citrate synthase, mitochondrial precursor [Bos taurus].
Length = 466
Score = 674 bits (1738), Expect = 0.0
Identities = 339/404 (83%), Positives = 354/404 (87%)
Frame = +3
Query: 144 MALLTAAARLFGAKEHFR*FCKRLLPPASTGGLS*TREVEVLLLQKNASCLVLAARHASA 323
MALLTAAARLFGAK NASCLVLAARHASA
Sbjct: 1 MALLTAAARLFGAK--------------------------------NASCLVLAARHASA 28
Query: 324 SSTNLKDILADLIPKEQARIKTFRQQHGNTVVGQITVDMMYGGMRGMKGLVYETSVLDPD 503
SSTNLKDILADLIPKEQ R+K FRQQHG TVVGQITVDMMYGGMRGMKGLVYETSVLDPD
Sbjct: 29 SSTNLKDILADLIPKEQTRVKAFRQQHGKTVVGQITVDMMYGGMRGMKGLVYETSVLDPD 88
Query: 504 EGIRFRGYSIPECQKMLPKAKGGEEPLPEGLFWLLVTGQIPTEEQVSWLSKEWAKRAALP 683
EGIRFRGYSIPECQK+LPKAKGGEEPLPEGLFWLLVTGQIPTEEQVSWLS+EWAKRAALP
Sbjct: 89 EGIRFRGYSIPECQKLLPKAKGGEEPLPEGLFWLLVTGQIPTEEQVSWLSQEWAKRAALP 148
Query: 684 SHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGIHRTKYWELIYEDCMDLIAK 863
SHVVTMLDNFPTNLHPMSQLSAA+TALNSES FARAY+EGI+RTKYWELIYED MDLIAK
Sbjct: 149 SHVVTMLDNFPTNLHPMSQLSAAVTALNSESTFARAYSEGINRTKYWELIYEDSMDLIAK 208
Query: 864 LPCVAAKIYRNLYREGSSIGAIDSKLDWSHHFTNMLGYTDAQFTELMRLYLTIHSDHEGG 1043
LPCVAAKIYRNLYREGSSIGAID KLDWSH+FTNMLGYTDAQFTELMRLYLTIHSDHEGG
Sbjct: 209 LPCVAAKIYRNLYREGSSIGAIDPKLDWSHNFTNMLGYTDAQFTELMRLYLTIHSDHEGG 268
Query: 1044 NVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKESRQDVSDEKL 1223
NVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKE +DVSDEKL
Sbjct: 269 NVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKEVGKDVSDEKL 328
Query: 1224 PDYIWDTLNSRRVGPGYWHRILKETDSRYYCPKKVALKHLPSNP 1355
DYIW+TLNS RV PGY H +L++TD RY C ++ ALKHLP +P
Sbjct: 329 RDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPQDP 372
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 54,471,772
Number of extensions: 1535422
Number of successful extensions: 5257
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5250
Number of HSP's successfully gapped: 2
Length of query: 452
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 346
Effective length of database: 14,174,046
Effective search space: 4904219916
Effective search space used: 4904219916
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001824
(1356 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531634.2| PREDICTED: similar to citrate synthase [Canis f... 686 0.0
>ref|XP_531634.2| PREDICTED: similar to citrate synthase [Canis familiaris].
Length = 466
Score = 686 bits (1769), Expect = 0.0
Identities = 347/401 (86%), Positives = 357/401 (89%)
Frame = +3
Query: 144 MALLTAAARLFGAKEHFR*FCKRLLPPASTGGLS*TREVEVLLLQKNASCLVLAARHASA 323
MALLTAAARLFGAK NASCLVLAARHASA
Sbjct: 1 MALLTAAARLFGAK--------------------------------NASCLVLAARHASA 28
Query: 324 SSTNLKDILADLIPKEQARIKTFRQQHGNTVVGQITVDMMYGGMRGMKGLVYETSVLDPD 503
SSTNLKDILADLIPKEQARIKTFRQQHG TVVGQITVDMMYGGMRGMKGLVYETSVLDPD
Sbjct: 29 SSTNLKDILADLIPKEQARIKTFRQQHGKTVVGQITVDMMYGGMRGMKGLVYETSVLDPD 88
Query: 504 EGIRFRGYSIPECQKMLPKAKGGEEPLPEGLFWLLVTGQIPTEEQVSWLSKEWAKRAALP 683
EGIRFRGYSIPECQK+LPKAKGGEEPLPEGLFWLLVTGQIPTEEQVSWLSKEWAKRAALP
Sbjct: 89 EGIRFRGYSIPECQKLLPKAKGGEEPLPEGLFWLLVTGQIPTEEQVSWLSKEWAKRAALP 148
Query: 684 SHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGIHRTKYWELIYEDCMDLIAK 863
SHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGI+RTKYWELIYEDCMDLIAK
Sbjct: 149 SHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGINRTKYWELIYEDCMDLIAK 208
Query: 864 LPCVAAKIYRNLYREGSSIGAIDSKLDWSHHFTNMLGYTDAQFTELMRLYLTIHSDHEGG 1043
LPCVAAKIYRNLYREGSSIGAIDSKLDWSH+FTNMLGYTDAQFTELMRLYLTIHSDHEGG
Sbjct: 209 LPCVAAKIYRNLYREGSSIGAIDSKLDWSHNFTNMLGYTDAQFTELMRLYLTIHSDHEGG 268
Query: 1044 NVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKESRQDVSDEKL 1223
NVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKE +DVSDEKL
Sbjct: 269 NVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKEVGKDVSDEKL 328
Query: 1224 PDYIWDTLNSRRVGPGYWHRILKETDSRYYCPKKVALKHLP 1346
DYIW+TLNS RV PGY H +L++TD RY C ++ ALKHLP
Sbjct: 329 RDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLP 369
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 56,654,219
Number of extensions: 1570907
Number of successful extensions: 5349
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5346
Number of HSP's successfully gapped: 2
Length of query: 452
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 346
Effective length of database: 15,340,888
Effective search space: 5307947248
Effective search space used: 5307947248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001824
(1356 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004068.2| citrate synthase, mitochondrial precursor [Homo... 667 0.0
>ref|NP_004068.2| citrate synthase, mitochondrial precursor [Homo sapiens].
Length = 466
Score = 667 bits (1722), Expect = 0.0
Identities = 337/404 (83%), Positives = 351/404 (86%)
Frame = +3
Query: 144 MALLTAAARLFGAKEHFR*FCKRLLPPASTGGLS*TREVEVLLLQKNASCLVLAARHASA 323
MALLTAAARL G K NASCLVLAARHASA
Sbjct: 1 MALLTAAARLLGTK--------------------------------NASCLVLAARHASA 28
Query: 324 SSTNLKDILADLIPKEQARIKTFRQQHGNTVVGQITVDMMYGGMRGMKGLVYETSVLDPD 503
SSTNLKDILADLIPKEQARIKTFRQQHG TVVGQITVDMMYGGMRGMKGLVYETSVLDPD
Sbjct: 29 SSTNLKDILADLIPKEQARIKTFRQQHGKTVVGQITVDMMYGGMRGMKGLVYETSVLDPD 88
Query: 504 EGIRFRGYSIPECQKMLPKAKGGEEPLPEGLFWLLVTGQIPTEEQVSWLSKEWAKRAALP 683
EGIRFRG+SIPECQK+LPKAKGGEEPLPEGLFWLLVTG IPTEEQVSWLSKEWAKRAALP
Sbjct: 89 EGIRFRGFSIPECQKLLPKAKGGEEPLPEGLFWLLVTGHIPTEEQVSWLSKEWAKRAALP 148
Query: 684 SHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGIHRTKYWELIYEDCMDLIAK 863
SHVVTMLDNFPTNLHPMSQLSAA+TALNSESNFARAYA+GI RTKYWELIYED MDLIAK
Sbjct: 149 SHVVTMLDNFPTNLHPMSQLSAAVTALNSESNFARAYAQGISRTKYWELIYEDSMDLIAK 208
Query: 864 LPCVAAKIYRNLYREGSSIGAIDSKLDWSHHFTNMLGYTDAQFTELMRLYLTIHSDHEGG 1043
LPCVAAKIYRNLYREGS IGAIDS LDWSH+FTNMLGYTD QFTEL RLYLTIHSDHEGG
Sbjct: 209 LPCVAAKIYRNLYREGSGIGAIDSNLDWSHNFTNMLGYTDHQFTELTRLYLTIHSDHEGG 268
Query: 1044 NVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKESRQDVSDEKL 1223
NVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKE +DVSDEKL
Sbjct: 269 NVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKEVGKDVSDEKL 328
Query: 1224 PDYIWDTLNSRRVGPGYWHRILKETDSRYYCPKKVALKHLPSNP 1355
DYIW+TLNS RV PGY H +L++TD RY C ++ ALKHLP++P
Sbjct: 329 RDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPNDP 372
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 55,898,858
Number of extensions: 1567671
Number of successful extensions: 5331
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5314
Number of HSP's successfully gapped: 2
Length of query: 452
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 346
Effective length of database: 14,802,980
Effective search space: 5121831080
Effective search space used: 5121831080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001824
(1356 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080720.1| citrate synthase, mitochondrial precursor [Mus ... 672 0.0
Alignment gi|NP_082221.2| citrate synthase-like protein [Mus musculus]. 641 0.0
>ref|NP_080720.1| citrate synthase, mitochondrial precursor [Mus musculus].
Length = 464
Score = 672 bits (1733), Expect = 0.0
Identities = 336/404 (83%), Positives = 355/404 (87%)
Frame = +3
Query: 144 MALLTAAARLFGAKEHFR*FCKRLLPPASTGGLS*TREVEVLLLQKNASCLVLAARHASA 323
MALLTAA RL GAK N+SCLVLAARHASA
Sbjct: 1 MALLTAATRLLGAK--------------------------------NSSCLVLAARHASA 28
Query: 324 SSTNLKDILADLIPKEQARIKTFRQQHGNTVVGQITVDMMYGGMRGMKGLVYETSVLDPD 503
SSTNLKD+L++LIPKEQARIKTF+QQHG TVVGQITVDMMYGGMRGMKGLVYETSVLDPD
Sbjct: 29 SSTNLKDVLSNLIPKEQARIKTFKQQHGKTVVGQITVDMMYGGMRGMKGLVYETSVLDPD 88
Query: 504 EGIRFRGYSIPECQKMLPKAKGGEEPLPEGLFWLLVTGQIPTEEQVSWLSKEWAKRAALP 683
EGIRFRGYSIPECQKMLPKAKGGEEPLPEGLFWLLVTGQ+PTEEQVSWLS+EWAKRAALP
Sbjct: 89 EGIRFRGYSIPECQKMLPKAKGGEEPLPEGLFWLLVTGQMPTEEQVSWLSREWAKRAALP 148
Query: 684 SHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGIHRTKYWELIYEDCMDLIAK 863
SHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEG++R KYWELIYEDCMDLIAK
Sbjct: 149 SHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGMNRAKYWELIYEDCMDLIAK 208
Query: 864 LPCVAAKIYRNLYREGSSIGAIDSKLDWSHHFTNMLGYTDAQFTELMRLYLTIHSDHEGG 1043
LPCVAAKIYRNLYREGSSIGAIDS+LDWSH+FTNMLGYTD QFTELMRLYLTIHSDHEGG
Sbjct: 209 LPCVAAKIYRNLYREGSSIGAIDSRLDWSHNFTNMLGYTDPQFTELMRLYLTIHSDHEGG 268
Query: 1044 NVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKESRQDVSDEKL 1223
NVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKE +DVSDEKL
Sbjct: 269 NVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKEVGKDVSDEKL 328
Query: 1224 PDYIWDTLNSRRVGPGYWHRILKETDSRYYCPKKVALKHLPSNP 1355
DYIW+TLNS RV PGY H +L++TD RY C ++ ALKHLP +P
Sbjct: 329 RDYIWNTLNSGRVVPGYGHAVLRKTDPRYSCQREFALKHLPKDP 372
>ref|NP_082221.2| citrate synthase-like protein [Mus musculus].
Length = 466
Score = 641 bits (1653), Expect = 0.0
Identities = 309/359 (86%), Positives = 334/359 (93%)
Frame = +3
Query: 279 KNASCLVLAARHASASSTNLKDILADLIPKEQARIKTFRQQHGNTVVGQITVDMMYGGMR 458
KN CLVLAARHASASSTNLKD+L +LIPKEQARIKTFR++HG TVVGQITVDMMYGGMR
Sbjct: 14 KNPPCLVLAARHASASSTNLKDVLRNLIPKEQARIKTFRKKHGKTVVGQITVDMMYGGMR 73
Query: 459 GMKGLVYETSVLDPDEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLFWLLVTGQIPTEEQ 638
GMKGLVYETSVLDPDEGIRFRGYSIPECQK+LPKAKGG+EPLPEGLFWLLVTGQ+PTEEQ
Sbjct: 74 GMKGLVYETSVLDPDEGIRFRGYSIPECQKLLPKAKGGKEPLPEGLFWLLVTGQMPTEEQ 133
Query: 639 VSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGIHRTK 818
VSWLS+EW KRAALPSHVVTMLDNFPT LHPMSQLSAAIT LN+ESNFARAYA+G++RTK
Sbjct: 134 VSWLSQEWVKRAALPSHVVTMLDNFPTKLHPMSQLSAAITVLNNESNFARAYAQGMNRTK 193
Query: 819 YWELIYEDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSHHFTNMLGYTDAQFTE 998
YWEL YEDCMDL+AKLPCVAAKIYRNLYRE +I AIDSKLDWSH+FTNMLGYTD QFTE
Sbjct: 194 YWELTYEDCMDLLAKLPCVAAKIYRNLYREDRNIEAIDSKLDWSHNFTNMLGYTDPQFTE 253
Query: 999 LMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLT 1178
LMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAA+NGLAGPLHGLANQEVLVWLT
Sbjct: 254 LMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAALNGLAGPLHGLANQEVLVWLT 313
Query: 1179 QLQKESRQDVSDEKLPDYIWDTLNSRRVGPGYWHRILKETDSRYYCPKKVALKHLPSNP 1355
QLQKE +D SDEKL +YIW+TLNS RV PGY H +L++TD RY C ++ ALKHLP +P
Sbjct: 314 QLQKEVGEDASDEKLKNYIWNTLNSGRVVPGYGHAVLRKTDPRYSCQREFALKHLPKDP 372
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 47,525,157
Number of extensions: 1323977
Number of successful extensions: 4326
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4321
Number of HSP's successfully gapped: 3
Length of query: 452
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 347
Effective length of database: 12,463,779
Effective search space: 4324931313
Effective search space used: 4324931313
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001824
(1356 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999441.1| citrate synthase, mitochondrial precursor [Sus ... 694 0.0
Alignment gi|XP_003355512.1| PREDICTED: citrate synthase, mitochondrial-l... 320 9e-88
Alignment gi|XP_003355511.1| PREDICTED: citrate synthase, mitochondrial-l... 272 4e-73
Alignment gi|XP_003355514.1| PREDICTED: hypothetical protein LOC100621942... 70 3e-12
>ref|NP_999441.1| citrate synthase, mitochondrial precursor [Sus scrofa].
Length = 464
Score = 694 bits (1792), Expect = 0.0
Identities = 351/404 (86%), Positives = 360/404 (89%)
Frame = +3
Query: 144 MALLTAAARLFGAKEHFR*FCKRLLPPASTGGLS*TREVEVLLLQKNASCLVLAARHASA 323
MALLTAAARLFGAK NASCLVLAARHASA
Sbjct: 1 MALLTAAARLFGAK--------------------------------NASCLVLAARHASA 28
Query: 324 SSTNLKDILADLIPKEQARIKTFRQQHGNTVVGQITVDMMYGGMRGMKGLVYETSVLDPD 503
SSTNLKDILADLIPKEQARIKTFRQQHGNTVVGQITVDMMYGGMRGMKGLVYETSVLDPD
Sbjct: 29 SSTNLKDILADLIPKEQARIKTFRQQHGNTVVGQITVDMMYGGMRGMKGLVYETSVLDPD 88
Query: 504 EGIRFRGYSIPECQKMLPKAKGGEEPLPEGLFWLLVTGQIPTEEQVSWLSKEWAKRAALP 683
EGIRFRGYSIPECQKMLPKAKGGEEPLPEGLFWLLVTGQIPTEEQVSWLSKEWAKRAALP
Sbjct: 89 EGIRFRGYSIPECQKMLPKAKGGEEPLPEGLFWLLVTGQIPTEEQVSWLSKEWAKRAALP 148
Query: 684 SHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGIHRTKYWELIYEDCMDLIAK 863
SHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGIHRTKYWELIYEDCMDLIAK
Sbjct: 149 SHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGIHRTKYWELIYEDCMDLIAK 208
Query: 864 LPCVAAKIYRNLYREGSSIGAIDSKLDWSHHFTNMLGYTDAQFTELMRLYLTIHSDHEGG 1043
LPCVAAKIYRNLYREGSSIGAIDSKLDWSH+FTNMLGYTDAQFTELMRLYLTIHSDHEGG
Sbjct: 209 LPCVAAKIYRNLYREGSSIGAIDSKLDWSHNFTNMLGYTDAQFTELMRLYLTIHSDHEGG 268
Query: 1044 NVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKESRQDVSDEKL 1223
NVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKE +DVSDEKL
Sbjct: 269 NVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKEVGKDVSDEKL 328
Query: 1224 PDYIWDTLNSRRVGPGYWHRILKETDSRYYCPKKVALKHLPSNP 1355
DYIW+TLNS RV PGY H +L++TD RY C ++ ALKHLP +P
Sbjct: 329 RDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPHDP 372
>ref|XP_003355512.1| PREDICTED: citrate synthase, mitochondrial-like [Sus scrofa].
Length = 279
Score = 320 bits (821), Expect = 9e-88
Identities = 156/183 (85%), Positives = 167/183 (91%)
Frame = +3
Query: 807 HRTKYWELIYEDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSHHFTNMLGYTDA 986
+R + LIYEDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSH+FTNMLGYTDA
Sbjct: 5 NRKTEFMLIYEDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNFTNMLGYTDA 64
Query: 987 QFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVL 1166
QFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVL
Sbjct: 65 QFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVL 124
Query: 1167 VWLTQLQKESRQDVSDEKLPDYIWDTLNSRRVGPGYWHRILKETDSRYYCPKKVALKHLP 1346
VWLTQLQKE +DVSDEKL DYIW+TLNS RV PGY H +L++TD RY C ++ ALKHLP
Sbjct: 125 VWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLP 184
Query: 1347 SNP 1355
+P
Sbjct: 185 HDP 187
>ref|XP_003355511.1| PREDICTED: citrate synthase, mitochondrial-like [Sus scrofa].
Length = 140
Score = 272 bits (695), Expect = 4e-73
Identities = 130/131 (99%), Positives = 131/131 (100%)
Frame = +3
Query: 438 MMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLFWLLVTG 617
MMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLFWLLVTG
Sbjct: 1 MMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLFWLLVTG 60
Query: 618 QIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYA 797
QIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYA
Sbjct: 61 QIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYA 120
Query: 798 EGIHRTKYWEL 830
EGIHRTKYWE+
Sbjct: 121 EGIHRTKYWEV 131
>ref|XP_003355514.1| PREDICTED: hypothetical protein LOC100621942 [Sus scrofa].
Length = 711
Score = 70.1 bits (170), Expect = 3e-12
Identities = 32/35 (91%), Positives = 32/35 (91%)
Frame = +2
Query: 101 LPSFPPRQISEFACHGLTHCGRPALRSQGAFQVVL 205
LPSFPPRQISEFACHGLTHCGRPALRSQ A Q VL
Sbjct: 169 LPSFPPRQISEFACHGLTHCGRPALRSQDALQRVL 203
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,084,691
Number of extensions: 983830
Number of successful extensions: 3426
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3424
Number of HSP's successfully gapped: 5
Length of query: 452
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 350
Effective length of database: 8,804,438
Effective search space: 3081553300
Effective search space used: 3081553300
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001824
(1356 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 1334 0.0
Sscrofa_Chr05 392 e-106
>Sscrofa_Chr13
|| Length = 218635234
Score = 1334 bits (673), Expect = 0.0
Identities = 923/1001 (92%), Gaps = 14/1001 (1%)
Strand = Plus / Plus
Query: 279 aagaatgcatcctgtcttgttcttgctgcccggcatgccagtgcttcttccacgaactta 338
||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 87524257 aagaatgcatcctgtattgttcttgctgcctggcatgccagcgcttcttccacgaacttg 87524316
Query: 339 aaagacattttggctgacctgatacctaaggagcaagccagaattaagaccttcaggcag 398
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 87524317 aaagacattttggctgacctgatacctaaggagcaaaccagaattaagactttcaggcgt 87524376
Query: 399 caacacggcaacaccgtggtgggccaaatcactgtggacatgatgtatggtggcatgaga 458
||||| ||||| | ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 87524377 caacatggcaagatggtggtgggccaaatcactgtggacatgatgtatggtg-----aga 87524431
Query: 459 ggcatgaagggattggtgtatgaaacatcggttcttgatcctgatgagggcatccgtttc 518
|||||||||||||||||||||||||| | ||||||||||||||||||| ||||| |||||
Sbjct: 87524432 ggcatgaagggattggtgtatgaaacgttggttcttgatcctgatgagagcatctgtttc 87524491
Query: 519 cgaggctacagtatccctgaatgccagaaaatgctgcccaaggctaagggtggggaagaa 578
||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 87524492 tgaggctacagtgtccctgaatgccagaaactgctgcccaaggctaagggtgggaaagaa 87524551
Query: 579 ccgctgccagagggcttattttggctgctggtaactggacagatcccaacagaggagcag 638
|| |||||||||||||| |||||||||||||||| |||||||||||||||||||| | ||
Sbjct: 87524552 cccctgccagagggcttcttttggctgctggtaattggacagatcccaacagaggggtag 87524611
Query: 639 gtgtcttggctctcaaaagagtgggcaaagagggcagctctgccttcccatgtggtcacc 698
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87524612 gtgacttgcctctcaaaagagtgggcaaagagggcagctctgccttcccatgtggtcacc 87524671
Query: 699 atgctggacaactttcccacgaatctacaccccatgtctcagctcagtgcagccattaca 758
|||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 87524672 -tgctggacaactttcccatgaatctacaccccatgtctcagcttagtgcagccattaca 87524730
Query: 759 gccctcaacagtgaaagtaactttgcccgagcatatgcagagggtatccaccgaaccaag 818
|||||||||||||||||||||||||||||||||||||||| |||| ||| |||||| |||
Sbjct: 87524731 gccctcaacagtgaaagtaactttgcccgagcatatgcagggggtgtcctccgaactaag 87524790
Query: 819 tactgggagttgatttatgaagactgtatggatctgatcgcaaagctaccttgtgttgca 878
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 87524791 tactaggagttgatttatgaagactgtatggatctgatcacaaagctaccttgtgttgca 87524850
Query: 879 gcaaagatctaccggaatctctaccgggagggcagcagtattggggccattgattctaaa 938
|||||||||||| ||||||| || || |||||||||||||| ||||||||||||||||
Sbjct: 87524851 gcaaagatctactggaatct--actggtagggcagcagtattagggccattgattctaag 87524908
Query: 939 ctggactggtcccaccatttcaccaacatgttaggctatactgatgctcagttcacggag 998
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 87524909 ctggactggtcccacaatttcacgaacatgttaggctatactgatgctcagttcacggag 87524968
Query: 999 ctcatgcgcttgtacctcaccatccacagtgaccatgaaggtggcaatgtaagtgctcat 1058
||||||| |||||||||||||||||||||||||||||||||||||| | ||| |||| ||
Sbjct: 87524969 ctcatgcccttgtacctcaccatccacagtgaccatgaaggtggcagtctaaatgcttat 87525028
Query: 1059 accagccatttggtgggcagtgccctttcagacccctacttgtcctttgcagcagccatg 1118
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 87525029 accagccatttggtgggcagtgccttttcagacccctacttgtcctttgcagcagccatg 87525088
Query: 1119 aatgggctggcagggcccctacatg----ggctggcaaatcaagaagtgcttgtttggct 1174
||||||||| |||||||| |||||| ||| ||||||||| |||||||||||||||||
Sbjct: 87525089 aatgggctgacagggcccttacatggactggcaggcaaatcaggaagtgcttgtttggct 87525148
Query: 1175 gacacagctgcaaaaagaaagtcggc-aagatgtgtcagatgagaagttaccagactaca 1233
||||||||| || |||| |||| ||| ||||||| ||||||||||||||| ||||||||
Sbjct: 87525149 gacacagctacagaaag-aagttggcaaagatgtatcagatgagaagttatgagactaca 87525207
Query: 1234 tctgggatacactcaactcaagacgggttggtccaggctat 1274
||||| | |||||||||||| ||| ||||| |||||||||
Sbjct: 87525208 tctggaacacactcaactcaggacaggttgtcccaggctat 87525248
Score = 69.9 bits (35), Expect = 3e-09
Identities = 84/99 (84%), Gaps = 1/99 (1%)
Strand = Plus / Plus
Query: 87 cctgccgcatttctcttccctccttccctccccgccagatctccgaattcgcctgccatg 146
|||||| || |||||||||| |||||||||||| |||||||||| ||||| | |||||
Sbjct: 87524162 cctgccacagttctcttcccgccttccctccccaccagatctccaaattccaccaccatg 87524221
Query: 147 gccttactcactgcggccgcccggctcttcggagccaag 185
|| ||||| ||||| | ||||| |||||| |||||||||
Sbjct: 87524222 gctttacttactgcag-cgcccagctctttggagccaag 87524259
>Sscrofa_Chr05
|| Length = 111506441
Score = 392 bits (198), Expect = e-106
Identities = 201/202 (99%)
Strand = Plus / Minus
Query: 826 agttgatttatgaagactgtatggatctgatcgcaaagctaccttgtgttgcagcaaaga 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23164935 agttgatttatgaagactgtatggatctgatcgcaaagctaccttgtgttgcagcaaaga 23164876
Query: 886 tctaccggaatctctaccgggagggcagcagtattggggccattgattctaaactggact 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23164875 tctaccggaatctctaccgggagggcagcagtattggggccattgattctaaactggact 23164816
Query: 946 ggtcccaccatttcaccaacatgttaggctatactgatgctcagttcacggagctcatgc 1005
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23164815 ggtcccacaatttcaccaacatgttaggctatactgatgctcagttcacggagctcatgc 23164756
Query: 1006 gcttgtacctcaccatccacag 1027
||||||||||||||||||||||
Sbjct: 23164755 gcttgtacctcaccatccacag 23164734
Score = 381 bits (192), Expect = e-103
Identities = 192/192 (100%)
Strand = Plus / Minus
Query: 636 caggtgtcttggctctcaaaagagtgggcaaagagggcagctctgccttcccatgtggtc 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23083501 caggtgtcttggctctcaaaagagtgggcaaagagggcagctctgccttcccatgtggtc 23083442
Query: 696 accatgctggacaactttcccacgaatctacaccccatgtctcagctcagtgcagccatt 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23083441 accatgctggacaactttcccacgaatctacaccccatgtctcagctcagtgcagccatt 23083382
Query: 756 acagccctcaacagtgaaagtaactttgcccgagcatatgcagagggtatccaccgaacc 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23083381 acagccctcaacagtgaaagtaactttgcccgagcatatgcagagggtatccaccgaacc 23083322
Query: 816 aagtactgggag 827
||||||||||||
Sbjct: 23083321 aagtactgggag 23083310
Score = 270 bits (136), Expect = 2e-69
Identities = 136/136 (100%)
Strand = Plus / Minus
Query: 505 agggcatccgtttccgaggctacagtatccctgaatgccagaaaatgctgcccaaggcta 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23083866 agggcatccgtttccgaggctacagtatccctgaatgccagaaaatgctgcccaaggcta 23083807
Query: 565 agggtggggaagaaccgctgccagagggcttattttggctgctggtaactggacagatcc 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23083806 agggtggggaagaaccgctgccagagggcttattttggctgctggtaactggacagatcc 23083747
Query: 625 caacagaggagcaggt 640
||||||||||||||||
Sbjct: 23083746 caacagaggagcaggt 23083731
Score = 268 bits (135), Expect = 7e-69
Identities = 135/135 (100%)
Strand = Plus / Minus
Query: 1022 ccacagtgaccatgaaggtggcaatgtaagtgctcataccagccatttggtgggcagtgc 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23163908 ccacagtgaccatgaaggtggcaatgtaagtgctcataccagccatttggtgggcagtgc 23163849
Query: 1082 cctttcagacccctacttgtcctttgcagcagccatgaatgggctggcagggcccctaca 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23163848 cctttcagacccctacttgtcctttgcagcagccatgaatgggctggcagggcccctaca 23163789
Query: 1142 tgggctggcaaatca 1156
|||||||||||||||
Sbjct: 23163788 tgggctggcaaatca 23163774
Score = 216 bits (109), Expect = 2e-53
Identities = 109/109 (100%)
Strand = Plus / Minus
Query: 332 gaacttaaaagacattttggctgacctgatacctaaggagcaagccagaattaagacctt 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23085470 gaacttaaaagacattttggctgacctgatacctaaggagcaagccagaattaagacctt 23085411
Query: 392 caggcagcaacacggcaacaccgtggtgggccaaatcactgtggacatg 440
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23085410 caggcagcaacacggcaacaccgtggtgggccaaatcactgtggacatg 23085362
Score = 137 bits (69), Expect = 2e-29
Identities = 98/105 (93%), Gaps = 2/105 (1%)
Strand = Plus / Minus
Query: 1158 gaagtgcttgtttggctgacacagctgcaaaaagaaagtcggcaa-gatgtgtcagatga 1216
||||||||||||||||||||||||||||| || ||| |||||||| ||||||||||||||
Sbjct: 23163670 gaagtgcttgtttggctgacacagctgcagaaggaa-gtcggcaaagatgtgtcagatga 23163612
Query: 1217 gaagttaccagactacatctgggatacactcaactcaagacgggt 1261
|||||||| ||||||||||||| |||||||||||||| |||||||
Sbjct: 23163611 gaagttacgagactacatctggaatacactcaactcaggacgggt 23163567
Score = 137 bits (69), Expect = 2e-29
Identities = 98/105 (93%), Gaps = 2/105 (1%)
Strand = Plus / Plus
Query: 1158 gaagtgcttgtttggctgacacagctgcaaaaagaaagtcggcaa-gatgtgtcagatga 1216
||||||||||||||||||||||||||||| || ||| |||||||| ||||||||||||||
Sbjct: 23171407 gaagtgcttgtttggctgacacagctgcagaaggaa-gtcggcaaagatgtgtcagatga 23171465
Query: 1217 gaagttaccagactacatctgggatacactcaactcaagacgggt 1261
|||||||| ||||||||||||| |||||||||||||| |||||||
Sbjct: 23171466 gaagttacgagactacatctggaatacactcaactcaggacgggt 23171510
Score = 135 bits (68), Expect = 7e-29
Identities = 68/68 (100%)
Strand = Plus / Minus
Query: 440 gatgtatggtggcatgagaggcatgaagggattggtgtatgaaacatcggttcttgatcc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23084476 gatgtatggtggcatgagaggcatgaagggattggtgtatgaaacatcggttcttgatcc 23084417
Query: 500 tgatgagg 507
||||||||
Sbjct: 23084416 tgatgagg 23084409
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,441,625
Number of extensions: 399
Number of successful extensions: 399
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 392
Number of HSP's successfully gapped: 10
Length of query: 1356
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1335
Effective length of database: 2,808,413,156
Effective search space: 3749231563260
Effective search space used: 3749231563260
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)