Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001853
(1250 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095735.1| homocysteine-responsive endoplasmic reticulu... 445 e-147
Alignment gi|NP_001069026.1| homocysteine-responsive endoplasmic reticulu... 162 4e-40
>ref|NP_001095735.1| homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like
domain member 1 protein [Bos taurus].
Length = 389
Score = 445 bits (1145), Expect(2) = e-147
Identities = 225/305 (73%), Positives = 235/305 (77%)
Frame = +2
Query: 179 MEPEPEPVTLLVKSPNQRHRDLELSGDRSWSVGRLKAHLSRVYPERPRPEDQRLIYSGKX 358
MEPEPEPVTLLVKSPNQRHRDLELS DRSWSVGRLKAH SRVYPERPRPEDQRLIYSGK
Sbjct: 1 MEPEPEPVTLLVKSPNQRHRDLELSADRSWSVGRLKAHQSRVYPERPRPEDQRLIYSGKL 60
Query: 359 XXXXXXXXXXXPKQEKRHVLHLVCSVKSPSKIPEASTKVAESREQPAGLNQXXXXXXXXX 538
PKQEKRHV+HLVC+VKS SK+PEA KVAES EQP GLNQ
Sbjct: 61 LLDHQCLRDLLPKQEKRHVMHLVCNVKSTSKMPEAGAKVAESTEQPTGLNQGQSPGDSSS 120
Query: 539 XXLRQREVVRNPSPSGWENISRSDAAQLAFQGLGPGFSGYTTYGWLQLSWFXXXXXXXXX 718
LRQREV+RNPSPSGWE+ISR +AAQ AFQGLGPGFSGYTTYGWLQLSWF
Sbjct: 121 DGLRQREVLRNPSPSGWESISRPEAAQPAFQGLGPGFSGYTTYGWLQLSWFQQMYARQYY 180
Query: 719 XXXXXXTAASGAFVPSPSAQEIPVVSXXXXXXIHNQFPAEXXXXXXXXXXXXXXXXGANQ 898
TAASGAFVP+PSAQEIPVV+ IHNQFPAE GANQ
Sbjct: 181 MQYLAATAASGAFVPAPSAQEIPVVTAPTPAPIHNQFPAENQPANQNAAPQVVVNPGANQ 240
Query: 899 NLRMNAQGGPIVEEDDEINRDWLDWTYSAATFSVFLCILYFYSSLSRFLMVMGATIVMYL 1078
NLRMNAQGGPIVEEDDEINRDWLDWTYSAATFSVFL ILYFYSSLSRFLMVMGAT+VMYL
Sbjct: 241 NLRMNAQGGPIVEEDDEINRDWLDWTYSAATFSVFLSILYFYSSLSRFLMVMGATVVMYL 300
Query: 1079 HHVGW 1093
+HVGW
Sbjct: 301 NHVGW 305
Score = 97.4 bits (241), Expect(2) = e-147
Identities = 43/52 (82%), Positives = 45/52 (86%)
Frame = +3
Query: 1086 LGGFPFRQRPVQNLPNDGPPQEAVNQDPNNNFQEGPDPEIEDPNHLPPKRDV 1241
+G FPFRQRPVQN PNDG PQEAVNQDPNNNFQ PDPE EDP+HLPP RDV
Sbjct: 303 VGWFPFRQRPVQNFPNDGGPQEAVNQDPNNNFQGDPDPESEDPSHLPPDRDV 354
>ref|NP_001069026.1| homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like
domain member 2 protein [Bos taurus].
Length = 406
Score = 162 bits (411), Expect = 4e-40
Identities = 101/321 (31%), Positives = 153/321 (47%), Gaps = 22/321 (6%)
Frame = +2
Query: 197 PVTLLVKSPNQRHRDLELSGDRSWSVGRLKAHLSRVYPERPRPEDQRLIYSGKXXXXXXX 376
PVTL++K+PNQ++ D +S +W+VG+LK HLS VYP +P +DQRL+YSG+
Sbjct: 9 PVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQ 68
Query: 377 XXXXXPKQEKRHVLHLVCSVKSPSKIPEASTKVAESREQPAGLNQXXXXXXXXXXXLRQR 556
KQ++ H++HLVC+ ++P P++ST ES E A + +
Sbjct: 69 LKDILRKQDEYHMVHLVCTSRTPPSSPKSSTN-RESHEALASNSNSSSDQSGSSTPSSSQ 127
Query: 557 EVVRNPSPSGWENI-------SRSDAAQ---------------LAFQGLGPGFSGYTTYG 670
E + + S E + +++D AQ L Q + GF Y +
Sbjct: 128 ETLTLATSSSSEGLRQRTLPQAQTDPAQSHQVPYVMQGNVDNQLPGQAVPAGFPVYPAFN 187
Query: 671 WLQLSWFXXXXXXXXXXXXXXXTAASGAFVPSPSAQEIPVVSXXXXXXIHNQFPAEXXXX 850
LQ+ W+ +A +P+ PA
Sbjct: 188 PLQMLWWQQMYAHQYYMQYQAAVSAQATSNANPAQPAATQPLNLAHVPGEEPPPAPNLVA 247
Query: 851 XXXXXXXXXXXXGANQNLRMNAQGGPIVEEDDEINRDWLDWTYSAATFSVFLCILYFYSS 1030
N+N++MNAQGGP++ E+D NRDWLDW Y+ + ++ L I+YFYSS
Sbjct: 248 QENRPM--------NENVQMNAQGGPVLNEED-FNRDWLDWMYTFSRAAILLSIVYFYSS 298
Query: 1031 LSRFLMVMGATIVMYLHHVGW 1093
SRF+MVMGA +++YLH GW
Sbjct: 299 FSRFIMVMGAMLLVYLHQAGW 319
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 52,877,812
Number of extensions: 1649223
Number of successful extensions: 9147
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8909
Number of HSP's successfully gapped: 4
Length of query: 416
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 311
Effective length of database: 14,207,134
Effective search space: 4418418674
Effective search space used: 4418418674
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001853
(1250 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851041.1| PREDICTED: similar to Homocysteine-responsive e... 444 e-150
Alignment gi|XP_535290.2| PREDICTED: similar to Homocysteine-responsive e... 187 6e-73
Alignment gi|XP_862968.1| PREDICTED: similar to homocysteine-inducible, e... 216 3e-56
Alignment gi|XP_532515.2| PREDICTED: similar to CG14536-PA, isoform A iso... 165 7e-41
Alignment gi|XP_865572.1| PREDICTED: similar to CG14536-PA, isoform A iso... 94 4e-19
>ref|XP_851041.1| PREDICTED: similar to Homocysteine-responsive endoplasmic
reticulum-resident ubiquitin-like domain member 1 protein
(Methyl methanesulfonate (MMF)-inducible fragment protein
1) isoform 2 [Canis familiaris].
Length = 393
Score = 444 bits (1141), Expect(2) = e-150
Identities = 226/304 (74%), Positives = 233/304 (76%)
Frame = +2
Query: 182 EPEPEPVTLLVKSPNQRHRDLELSGDRSWSVGRLKAHLSRVYPERPRPEDQRLIYSGKXX 361
EPEPEPVTLLVKSPNQRHRDLELSGDRSWSVGRLKAHLSRVYPERPRPEDQRLIYSGK
Sbjct: 6 EPEPEPVTLLVKSPNQRHRDLELSGDRSWSVGRLKAHLSRVYPERPRPEDQRLIYSGKLL 65
Query: 362 XXXXXXXXXXPKQEKRHVLHLVCSVKSPSKIPEASTKVAESREQPAGLNQXXXXXXXXXX 541
PKQEKRHVLHLVC+VK PSK + S KVAES EQPAGL+Q
Sbjct: 66 LDHQYLKDLLPKQEKRHVLHLVCNVKGPSKTSDTSAKVAESTEQPAGLHQGQYPGDSSGD 125
Query: 542 XLRQREVVRNPSPSGWENISRSDAAQLAFQGLGPGFSGYTTYGWLQLSWFXXXXXXXXXX 721
LRQR+V+RN SPSGWENISR +AAQ AFQGLGPGFSGYTTYGWLQLSWF
Sbjct: 126 SLRQRDVLRNLSPSGWENISRPEAAQPAFQGLGPGFSGYTTYGWLQLSWFQQMYARQYYM 185
Query: 722 XXXXXTAASGAFVPSPSAQEIPVVSXXXXXXIHNQFPAEXXXXXXXXXXXXXXXXGANQN 901
TAASGAFV SPSAQEIPVVS IHNQFPAE GANQN
Sbjct: 186 QYLAATAASGAFVASPSAQEIPVVSAPAPAPIHNQFPAENQPANQNAAPPVVVNPGANQN 245
Query: 902 LRMNAQGGPIVEEDDEINRDWLDWTYSAATFSVFLCILYFYSSLSRFLMVMGATIVMYLH 1081
LRMNAQGGPIVEEDDEINRDWLDWTYSAATFSVFL ILYFYSSLSRFLMVMGAT+VMYLH
Sbjct: 246 LRMNAQGGPIVEEDDEINRDWLDWTYSAATFSVFLSILYFYSSLSRFLMVMGATVVMYLH 305
Query: 1082 HVGW 1093
HVGW
Sbjct: 306 HVGW 309
Score = 107 bits (266), Expect(2) = e-150
Identities = 47/55 (85%), Positives = 49/55 (89%)
Frame = +3
Query: 1086 LGGFPFRQRPVQNLPNDGPPQEAVNQDPNNNFQEGPDPEIEDPNHLPPKRDVLDE 1250
+G FPFRQRPVQN PNDGPP EAVNQDPNNN QEG DPEIEDPNHLPP RDVLD+
Sbjct: 307 VGWFPFRQRPVQNFPNDGPPHEAVNQDPNNNLQEGLDPEIEDPNHLPPDRDVLDD 361
>ref|XP_535290.2| PREDICTED: similar to Homocysteine-responsive endoplasmic
reticulum-resident ubiquitin-like domain member 1 protein
(Methyl methanesulfonate (MMF)-inducible fragment protein
1) isoform 1 [Canis familiaris].
Length = 216
Score = 187 bits (474), Expect(2) = 6e-73
Identities = 94/119 (78%), Positives = 95/119 (79%)
Frame = +2
Query: 737 TAASGAFVPSPSAQEIPVVSXXXXXXIHNQFPAEXXXXXXXXXXXXXXXXGANQNLRMNA 916
TAASGAFV SPSAQEIPVVS IHNQFPAE GANQNLRMNA
Sbjct: 14 TAASGAFVASPSAQEIPVVSAPAPAPIHNQFPAENQPANQNAAPPVVVNPGANQNLRMNA 73
Query: 917 QGGPIVEEDDEINRDWLDWTYSAATFSVFLCILYFYSSLSRFLMVMGATIVMYLHHVGW 1093
QGGPIVEEDDEINRDWLDWTYSAATFSVFL ILYFYSSLSRFLMVMGAT+VMYLHHVGW
Sbjct: 74 QGGPIVEEDDEINRDWLDWTYSAATFSVFLSILYFYSSLSRFLMVMGATVVMYLHHVGW 132
Score = 107 bits (266), Expect(2) = 6e-73
Identities = 47/55 (85%), Positives = 49/55 (89%)
Frame = +3
Query: 1086 LGGFPFRQRPVQNLPNDGPPQEAVNQDPNNNFQEGPDPEIEDPNHLPPKRDVLDE 1250
+G FPFRQRPVQN PNDGPP EAVNQDPNNN QEG DPEIEDPNHLPP RDVLD+
Sbjct: 130 VGWFPFRQRPVQNFPNDGPPHEAVNQDPNNNLQEGLDPEIEDPNHLPPDRDVLDD 184
>ref|XP_862968.1| PREDICTED: similar to homocysteine-inducible, endoplasmic reticulum
stress-inducible, ubiquitin-like domain member 1 isoform
3 [Canis familiaris].
Length = 168
Score = 216 bits (551), Expect = 3e-56
Identities = 110/148 (74%), Positives = 116/148 (78%)
Frame = +2
Query: 182 EPEPEPVTLLVKSPNQRHRDLELSGDRSWSVGRLKAHLSRVYPERPRPEDQRLIYSGKXX 361
EPEPEPVTLLVKSPNQRHRDLELSGDRSWSVGRLKAHLSRVYPERPRPEDQRLIYSGK
Sbjct: 6 EPEPEPVTLLVKSPNQRHRDLELSGDRSWSVGRLKAHLSRVYPERPRPEDQRLIYSGKLL 65
Query: 362 XXXXXXXXXXPKQEKRHVLHLVCSVKSPSKIPEASTKVAESREQPAGLNQXXXXXXXXXX 541
PKQEKRHVLHLVC+VK PSK + S KVAES EQPAGL+Q
Sbjct: 66 LDHQYLKDLLPKQEKRHVLHLVCNVKGPSKTSDTSAKVAESTEQPAGLHQGQYPGDSSGD 125
Query: 542 XLRQREVVRNPSPSGWENISRSDAAQLA 625
LRQR+V+RN SPSGWENISR +AAQ A
Sbjct: 126 SLRQRDVLRNLSPSGWENISRPEAAQPA 153
>ref|XP_532515.2| PREDICTED: similar to CG14536-PA, isoform A isoform 1 [Canis
familiaris].
Length = 406
Score = 165 bits (418), Expect = 7e-41
Identities = 105/333 (31%), Positives = 158/333 (47%), Gaps = 22/333 (6%)
Frame = +2
Query: 197 PVTLLVKSPNQRHRDLELSGDRSWSVGRLKAHLSRVYPERPRPEDQRLIYSGKXXXXXXX 376
PVTL++K+PNQ++ D +S +W+VG+LK HLS VYP +P +DQRL+YSG+
Sbjct: 9 PVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQ 68
Query: 377 XXXXXPKQEKRHVLHLVCSVKSPSKIPEASTKVAESREQPAGLNQXXXXXXXXXXXLRQR 556
KQ++ H++HLVC+ ++P P++ST ES E A + +
Sbjct: 69 LKDILRKQDEYHMVHLVCTSRTPPSSPKSST-TRESLEALASSSNSSSDQSGSTTPSSSQ 127
Query: 557 EVVRNPSPSGWENI-------SRSDAAQ---------------LAFQGLGPGFSGYTTYG 670
E + + S E + +++D AQ L Q + GF Y +
Sbjct: 128 ETLSLAASSSSEGLRQRTLPQAQTDPAQSHQFPYVMQGNVDNQLPGQAIPAGFPVYPAFS 187
Query: 671 WLQLSWFXXXXXXXXXXXXXXXTAASGAFVPSPSAQEIPVVSXXXXXXIHNQFPAEXXXX 850
LQ+ W+ +A +P+ P S P E
Sbjct: 188 PLQMLWWQQMYAHQYYMQYQAAVSAQATSNANPAQ---PAASQPLNLA---HVPGEEPPP 241
Query: 851 XXXXXXXXXXXXGANQNLRMNAQGGPIVEEDDEINRDWLDWTYSAATFSVFLCILYFYSS 1030
N+N++MNAQGGP++ E+D NRDWLDW Y+ + ++ L I+YFYSS
Sbjct: 242 APNLVAQENRPM--NENVQMNAQGGPVLNEED-FNRDWLDWMYTFSRAAILLSIVYFYSS 298
Query: 1031 LSRFLMVMGATIVMYLHHVGWVSVSTEASSELA 1129
SRF+MVMGA +++YLH GW E + A
Sbjct: 299 FSRFIMVMGAMLLVYLHQAGWFPFRQEGGQQQA 331
>ref|XP_865572.1| PREDICTED: similar to CG14536-PA, isoform A isoform 2 [Canis
familiaris].
Length = 205
Score = 93.6 bits (231), Expect = 4e-19
Identities = 58/187 (31%), Positives = 92/187 (49%), Gaps = 22/187 (11%)
Frame = +2
Query: 197 PVTLLVKSPNQRHRDLELSGDRSWSVGRLKAHLSRVYPERPRPEDQRLIYSGKXXXXXXX 376
PVTL++K+PNQ++ D +S +W+VG+LK HLS VYP +P +DQRL+YSG+
Sbjct: 9 PVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQ 68
Query: 377 XXXXXPKQEKRHVLHLVCSVKSPSKIPEASTKVAESREQPAGLNQXXXXXXXXXXXLRQR 556
KQ++ H++HLVC+ ++P P++ST ES E A + +
Sbjct: 69 LKDILRKQDEYHMVHLVCTSRTPPSSPKSST-TRESLEALASSSNSSSDQSGSTTPSSSQ 127
Query: 557 EVVRNPSPSGWENI-------SRSDAA---------------QLAFQGLGPGFSGYTTYG 670
E + + S E + +++D A QL Q + GF Y +
Sbjct: 128 ETLSLAASSSSEGLRQRTLPQAQTDPAQSHQFPYVMQGNVDNQLPGQAIPAGFPVYPAFS 187
Query: 671 WLQLSWF 691
LQ+ W+
Sbjct: 188 PLQMLWW 194
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 55,139,165
Number of extensions: 1697204
Number of successful extensions: 9201
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 9012
Number of HSP's successfully gapped: 8
Length of query: 416
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 311
Effective length of database: 15,374,224
Effective search space: 4781383664
Effective search space used: 4781383664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001853
(1250 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055500.1| homocysteine-responsive endoplasmic reticulum-r... 434 e-145
Alignment gi|NP_001010989.1| homocysteine-responsive endoplasmic reticulu... 428 e-143
Alignment gi|NP_001010990.1| homocysteine-responsive endoplasmic reticulu... 379 e-128
Alignment gi|NP_071768.3| homocysteine-responsive endoplasmic reticulum-r... 163 3e-40
>ref|NP_055500.1| homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like
domain member 1 protein isoform 1 [Homo sapiens].
Length = 391
Score = 434 bits (1117), Expect(2) = e-145
Identities = 221/304 (72%), Positives = 229/304 (75%)
Frame = +2
Query: 182 EPEPEPVTLLVKSPNQRHRDLELSGDRSWSVGRLKAHLSRVYPERPRPEDQRLIYSGKXX 361
E EPEPVTLLVKSPNQRHRDLELSGDR WSVG LKAHLSRVYPERPRPEDQRLIYSGK
Sbjct: 4 ETEPEPVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLL 63
Query: 362 XXXXXXXXXXPKQEKRHVLHLVCSVKSPSKIPEASTKVAESREQPAGLNQXXXXXXXXXX 541
PKQEKRHVLHLVC+VKSPSK+PE + KVAES E+PAG N+
Sbjct: 64 LDHQCLRDLLPKQEKRHVLHLVCNVKSPSKMPEINAKVAESTEEPAGSNRGQYPEDSSSD 123
Query: 542 XLRQREVVRNPSPSGWENISRSDAAQLAFQGLGPGFSGYTTYGWLQLSWFXXXXXXXXXX 721
LRQREV+RN S GWENISR +AAQ AFQGLGPGFSGYT YGWLQLSWF
Sbjct: 124 GLRQREVLRNLSSPGWENISRPEAAQQAFQGLGPGFSGYTPYGWLQLSWFQQIYARQYYM 183
Query: 722 XXXXXTAASGAFVPSPSAQEIPVVSXXXXXXIHNQFPAEXXXXXXXXXXXXXXXXGANQN 901
TAASGAFVP PSAQEIPVVS IHNQFPAE GANQN
Sbjct: 184 QYLAATAASGAFVPPPSAQEIPVVSAPAPAPIHNQFPAENQPANQNAAPQVVVNPGANQN 243
Query: 902 LRMNAQGGPIVEEDDEINRDWLDWTYSAATFSVFLCILYFYSSLSRFLMVMGATIVMYLH 1081
LRMNAQGGPIVEEDDEINRDWLDWTYSAATFSVFL ILYFYSSLSRFLMVMGAT+VMYLH
Sbjct: 244 LRMNAQGGPIVEEDDEINRDWLDWTYSAATFSVFLSILYFYSSLSRFLMVMGATVVMYLH 303
Query: 1082 HVGW 1093
HVGW
Sbjct: 304 HVGW 307
Score = 99.8 bits (247), Expect(2) = e-145
Identities = 43/54 (79%), Positives = 45/54 (83%)
Frame = +3
Query: 1086 LGGFPFRQRPVQNLPNDGPPQEAVNQDPNNNFQEGPDPEIEDPNHLPPKRDVLD 1247
+G FPFR RPVQN PNDGPP + VNQDPNNN QEG DPE EDPNHLPP RDVLD
Sbjct: 305 VGWFPFRPRPVQNFPNDGPPPDVVNQDPNNNLQEGTDPETEDPNHLPPDRDVLD 358
>ref|NP_001010989.1| homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like
domain member 1 protein isoform 2 [Homo sapiens].
Length = 390
Score = 428 bits (1100), Expect(2) = e-143
Identities = 220/304 (72%), Positives = 228/304 (75%)
Frame = +2
Query: 182 EPEPEPVTLLVKSPNQRHRDLELSGDRSWSVGRLKAHLSRVYPERPRPEDQRLIYSGKXX 361
E EPEPVTLLVKSPNQRHRDLELSGDR WSVG LKAHLSRVYPERPRPEDQRLIYSGK
Sbjct: 4 ETEPEPVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLL 63
Query: 362 XXXXXXXXXXPKQEKRHVLHLVCSVKSPSKIPEASTKVAESREQPAGLNQXXXXXXXXXX 541
PK EKRHVLHLVC+VKSPSK+PE + KVAES E+PAG N+
Sbjct: 64 LDHQCLRDLLPK-EKRHVLHLVCNVKSPSKMPEINAKVAESTEEPAGSNRGQYPEDSSSD 122
Query: 542 XLRQREVVRNPSPSGWENISRSDAAQLAFQGLGPGFSGYTTYGWLQLSWFXXXXXXXXXX 721
LRQREV+RN S GWENISR +AAQ AFQGLGPGFSGYT YGWLQLSWF
Sbjct: 123 GLRQREVLRNLSSPGWENISRPEAAQQAFQGLGPGFSGYTPYGWLQLSWFQQIYARQYYM 182
Query: 722 XXXXXTAASGAFVPSPSAQEIPVVSXXXXXXIHNQFPAEXXXXXXXXXXXXXXXXGANQN 901
TAASGAFVP PSAQEIPVVS IHNQFPAE GANQN
Sbjct: 183 QYLAATAASGAFVPPPSAQEIPVVSAPAPAPIHNQFPAENQPANQNAAPQVVVNPGANQN 242
Query: 902 LRMNAQGGPIVEEDDEINRDWLDWTYSAATFSVFLCILYFYSSLSRFLMVMGATIVMYLH 1081
LRMNAQGGPIVEEDDEINRDWLDWTYSAATFSVFL ILYFYSSLSRFLMVMGAT+VMYLH
Sbjct: 243 LRMNAQGGPIVEEDDEINRDWLDWTYSAATFSVFLSILYFYSSLSRFLMVMGATVVMYLH 302
Query: 1082 HVGW 1093
HVGW
Sbjct: 303 HVGW 306
Score = 99.8 bits (247), Expect(2) = e-143
Identities = 43/54 (79%), Positives = 45/54 (83%)
Frame = +3
Query: 1086 LGGFPFRQRPVQNLPNDGPPQEAVNQDPNNNFQEGPDPEIEDPNHLPPKRDVLD 1247
+G FPFR RPVQN PNDGPP + VNQDPNNN QEG DPE EDPNHLPP RDVLD
Sbjct: 304 VGWFPFRPRPVQNFPNDGPPPDVVNQDPNNNLQEGTDPETEDPNHLPPDRDVLD 357
>ref|NP_001010990.1| homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like
domain member 1 protein isoform 3 [Homo sapiens].
Length = 366
Score = 379 bits (972), Expect(2) = e-128
Identities = 201/304 (66%), Positives = 206/304 (67%)
Frame = +2
Query: 182 EPEPEPVTLLVKSPNQRHRDLELSGDRSWSVGRLKAHLSRVYPERPRPEDQRLIYSGKXX 361
E EPEPVTLLVKSPNQRHRDLELSGDR WSVG LKAHLSRVYPERPRPEDQRLIYSGK
Sbjct: 4 ETEPEPVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLL 63
Query: 362 XXXXXXXXXXPKQEKRHVLHLVCSVKSPSKIPEASTKVAESREQPAGLNQXXXXXXXXXX 541
PK VAES E+PAG N+
Sbjct: 64 LDHQCLRDLLPK-------------------------VAESTEEPAGSNRGQYPEDSSSD 98
Query: 542 XLRQREVVRNPSPSGWENISRSDAAQLAFQGLGPGFSGYTTYGWLQLSWFXXXXXXXXXX 721
LRQREV+RN S GWENISR +AAQ AFQGLGPGFSGYT YGWLQLSWF
Sbjct: 99 GLRQREVLRNLSSPGWENISRPEAAQQAFQGLGPGFSGYTPYGWLQLSWFQQIYARQYYM 158
Query: 722 XXXXXTAASGAFVPSPSAQEIPVVSXXXXXXIHNQFPAEXXXXXXXXXXXXXXXXGANQN 901
TAASGAFVP PSAQEIPVVS IHNQFPAE GANQN
Sbjct: 159 QYLAATAASGAFVPPPSAQEIPVVSAPAPAPIHNQFPAENQPANQNAAPQVVVNPGANQN 218
Query: 902 LRMNAQGGPIVEEDDEINRDWLDWTYSAATFSVFLCILYFYSSLSRFLMVMGATIVMYLH 1081
LRMNAQGGPIVEEDDEINRDWLDWTYSAATFSVFL ILYFYSSLSRFLMVMGAT+VMYLH
Sbjct: 219 LRMNAQGGPIVEEDDEINRDWLDWTYSAATFSVFLSILYFYSSLSRFLMVMGATVVMYLH 278
Query: 1082 HVGW 1093
HVGW
Sbjct: 279 HVGW 282
Score = 99.8 bits (247), Expect(2) = e-128
Identities = 43/54 (79%), Positives = 45/54 (83%)
Frame = +3
Query: 1086 LGGFPFRQRPVQNLPNDGPPQEAVNQDPNNNFQEGPDPEIEDPNHLPPKRDVLD 1247
+G FPFR RPVQN PNDGPP + VNQDPNNN QEG DPE EDPNHLPP RDVLD
Sbjct: 280 VGWFPFRPRPVQNFPNDGPPPDVVNQDPNNNLQEGTDPETEDPNHLPPDRDVLD 333
>ref|NP_071768.3| homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like
domain member 2 protein [Homo sapiens].
Length = 406
Score = 163 bits (413), Expect = 3e-40
Identities = 105/333 (31%), Positives = 156/333 (46%), Gaps = 22/333 (6%)
Frame = +2
Query: 197 PVTLLVKSPNQRHRDLELSGDRSWSVGRLKAHLSRVYPERPRPEDQRLIYSGKXXXXXXX 376
PVTL++K+PNQ++ D +S +W+VG+LK HLS VYP +P +DQRL+YSG+
Sbjct: 9 PVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQ 68
Query: 377 XXXXXPKQEKRHVLHLVCSVKSPSKIPEASTKVAESREQPAGLNQXXXXXXXXXXXLRQR 556
KQ++ H++HLVC+ ++P P++ST ES E A + +
Sbjct: 69 LKDILRKQDEYHMVHLVCTSRTPPSSPKSSTN-RESHEALASSSNSSSDHSGSTTPSSGQ 127
Query: 557 EVVRNPSPSGWENI-------SRSDAAQ---------------LAFQGLGPGFSGYTTYG 670
E + S E + +++D AQ Q PGF Y +
Sbjct: 128 ETLSLAVGSSSEGLRQRTLPQAQTDQAQSHQFPYVMQGNVDNQFPGQAAPPGFPVYPAFS 187
Query: 671 WLQLSWFXXXXXXXXXXXXXXXTAASGAFVPSPSAQEIPVVSXXXXXXIHNQFPAEXXXX 850
LQ+ W+ +A +P+ P S P E
Sbjct: 188 PLQMLWWQQMYAHQYYMQYQAAVSAQATSNVNPTQ---PTTSQPLNLA---HVPGEEPPP 241
Query: 851 XXXXXXXXXXXXGANQNLRMNAQGGPIVEEDDEINRDWLDWTYSAATFSVFLCILYFYSS 1030
N+N++MNAQGGP++ E+D NRDWLDW Y+ + ++ L I+YFYSS
Sbjct: 242 APNLVAQENRPM--NENVQMNAQGGPVLNEED-FNRDWLDWMYTFSRAAILLSIVYFYSS 298
Query: 1031 LSRFLMVMGATIVMYLHHVGWVSVSTEASSELA 1129
SRF+MVMGA +++YLH GW E + A
Sbjct: 299 FSRFIMVMGAMLLVYLHQAGWFPFRQEGGHQQA 331
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 54,012,919
Number of extensions: 1659133
Number of successful extensions: 8854
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 8589
Number of HSP's successfully gapped: 8
Length of query: 416
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 311
Effective length of database: 14,835,944
Effective search space: 4613978584
Effective search space used: 4613978584
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001853
(1250 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_071726.1| homocysteine-responsive endoplasmic reticulum-r... 438 e-143
Alignment gi|NP_065611.1| homocysteine-responsive endoplasmic reticulum-r... 166 4e-41
>ref|NP_071726.1| homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like
domain member 1 protein [Mus musculus].
Length = 391
Score = 438 bits (1126), Expect(2) = e-143
Identities = 221/304 (72%), Positives = 230/304 (75%)
Frame = +2
Query: 182 EPEPEPVTLLVKSPNQRHRDLELSGDRSWSVGRLKAHLSRVYPERPRPEDQRLIYSGKXX 361
EP+PEPVTLLVKSPNQRHRDLELSGDRSWSV RLKAHLSRVYPERPRPEDQRLIYSGK
Sbjct: 4 EPQPEPVTLLVKSPNQRHRDLELSGDRSWSVSRLKAHLSRVYPERPRPEDQRLIYSGKLL 63
Query: 362 XXXXXXXXXXPKQEKRHVLHLVCSVKSPSKIPEASTKVAESREQPAGLNQXXXXXXXXXX 541
PKQEKRHVLHLVC+VK+PSK+PE STK AES EQP NQ
Sbjct: 64 LDHQCLQDLLPKQEKRHVLHLVCNVKNPSKMPETSTKGAESTEQPDNSNQTQHPGDSSSD 123
Query: 542 XLRQREVVRNPSPSGWENISRSDAAQLAFQGLGPGFSGYTTYGWLQLSWFXXXXXXXXXX 721
LRQREV+RN SPSGWENISR +A Q FQGLGPGFSGYTTYGWLQLSWF
Sbjct: 124 GLRQREVLRNLSPSGWENISRPEAVQQTFQGLGPGFSGYTTYGWLQLSWFQQIYARQYYM 183
Query: 722 XXXXXTAASGAFVPSPSAQEIPVVSXXXXXXIHNQFPAEXXXXXXXXXXXXXXXXGANQN 901
TAASG FVP+PSAQEIPVVS IHNQFPAE GANQN
Sbjct: 184 QYLAATAASGTFVPTPSAQEIPVVSTPAPAPIHNQFPAENQPANQNAAAQAVVNPGANQN 243
Query: 902 LRMNAQGGPIVEEDDEINRDWLDWTYSAATFSVFLCILYFYSSLSRFLMVMGATIVMYLH 1081
LRMNAQGGP+VEEDDEINRDWLDWTYSAATFSVFL ILYFYSSLSRFLMVMGAT+VMYLH
Sbjct: 244 LRMNAQGGPLVEEDDEINRDWLDWTYSAATFSVFLSILYFYSSLSRFLMVMGATVVMYLH 303
Query: 1082 HVGW 1093
HVGW
Sbjct: 304 HVGW 307
Score = 90.5 bits (223), Expect(2) = e-143
Identities = 39/54 (72%), Positives = 45/54 (83%)
Frame = +3
Query: 1086 LGGFPFRQRPVQNLPNDGPPQEAVNQDPNNNFQEGPDPEIEDPNHLPPKRDVLD 1247
+G FPFRQRPVQN P+DG P++A NQDPNNN Q G DPE+EDPN LPP R+VLD
Sbjct: 305 VGWFPFRQRPVQNFPDDGGPRDAANQDPNNNLQGGMDPEMEDPNRLPPDREVLD 358
>ref|NP_065611.1| homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like
domain member 2 protein [Mus musculus].
Length = 404
Score = 166 bits (420), Expect = 4e-41
Identities = 105/331 (31%), Positives = 157/331 (47%), Gaps = 20/331 (6%)
Frame = +2
Query: 197 PVTLLVKSPNQRHRDLELSGDRSWSVGRLKAHLSRVYPERPRPEDQRLIYSGKXXXXXXX 376
PVTL++K+PNQ++ D +S +W+VG+LK HLS VYP +P +DQRL+YSG+
Sbjct: 9 PVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQ 68
Query: 377 XXXXXPKQEKRHVLHLVCSVKSPSKIPEASTK------VAESREQ---------PAGLNQ 511
KQ++ H++HLVC+ +SP P++ST +A S P+ +
Sbjct: 69 LKDILRKQDEYHMVHLVCASRSPPSSPKSSTDRGSHEALASSTSSNSDHSDSTTPSPSQE 128
Query: 512 XXXXXXXXXXXLRQREVVRNPSPSGWEN-----ISRSDAAQLAFQGLGPGFSGYTTYGWL 676
LRQR + + + + I + Q QG+ P F Y L
Sbjct: 129 SLSLVTGSSEGLRQRTLSQAQTDPAQSHQFPYVIQGNVDHQFPGQGVPPAFPVYPALSPL 188
Query: 677 QLSWFXXXXXXXXXXXXXXXTAASGAFVPSPSAQEIPVVSXXXXXXIHNQFPAEXXXXXX 856
Q+ W+ A S S + + S + + P
Sbjct: 189 QMLWWQQMYAHQYYMQYQ--AAVSAQATSSAGSAQRAASSPLNLAHVPGEEPPPAPNLVA 246
Query: 857 XXXXXXXXXXGANQNLRMNAQGGPIVEEDDEINRDWLDWTYSAATFSVFLCILYFYSSLS 1036
N+N++MNAQGGP++ E+D +NRDWLDW Y+ + +V L I+YFYSS S
Sbjct: 247 QENGPM------NENVQMNAQGGPVLNEED-LNRDWLDWVYTFSRAAVLLSIVYFYSSFS 299
Query: 1037 RFLMVMGATIVMYLHHVGWVSVSTEASSELA 1129
RF+MVMGA +++YLH GW E + A
Sbjct: 300 RFIMVMGAMLLVYLHQAGWFPFRQEGGQQQA 330
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 45,445,295
Number of extensions: 1368065
Number of successful extensions: 6870
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6666
Number of HSP's successfully gapped: 4
Length of query: 416
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 312
Effective length of database: 12,493,815
Effective search space: 3898070280
Effective search space used: 3898070280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001853
(1250 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361736.1| PREDICTED: homocysteine-responsive endoplasm... 251 2e-95
Alignment gi|XP_003134841.2| PREDICTED: homocysteine-responsive endoplasm... 166 3e-41
Alignment gi|XP_003361492.1| PREDICTED: homocysteine-responsive endoplasm... 137 1e-32
>ref|XP_003361736.1| PREDICTED: homocysteine-responsive endoplasmic reticulum-resident
ubiquitin-like domain member 1 protein-like, partial [Sus
scrofa].
Length = 247
Score = 251 bits (640), Expect(2) = 2e-95
Identities = 126/163 (77%), Positives = 126/163 (77%)
Frame = +2
Query: 605 SDAAQLAFQGLGPGFSGYTTYGWLQLSWFXXXXXXXXXXXXXXXTAASGAFVPSPSAQEI 784
SDAAQLAFQGLGPGFSGYTTYGWLQLSWF TAASGAFVPSPSAQEI
Sbjct: 1 SDAAQLAFQGLGPGFSGYTTYGWLQLSWFQQMYARQYYMQDLAATAASGAFVPSPSAQEI 60
Query: 785 PVVSXXXXXXIHNQFPAEXXXXXXXXXXXXXXXXGANQNLRMNAQGGPIVEEDDEINRDW 964
PVVS IHNQFPAE GANQNLRMNAQGGPIVEEDDEINRDW
Sbjct: 61 PVVSAPAPAPIHNQFPAENQPANQNAAPQVVVNPGANQNLRMNAQGGPIVEEDDEINRDW 120
Query: 965 LDWTYSAATFSVFLCILYFYSSLSRFLMVMGATIVMYLHHVGW 1093
LDWTYSAATFSVFLCILYFYSSLSRFLMVMGATIVMYLHHVGW
Sbjct: 121 LDWTYSAATFSVFLCILYFYSSLSRFLMVMGATIVMYLHHVGW 163
Score = 117 bits (294), Expect(2) = 2e-95
Identities = 52/55 (94%), Positives = 53/55 (96%)
Frame = +3
Query: 1086 LGGFPFRQRPVQNLPNDGPPQEAVNQDPNNNFQEGPDPEIEDPNHLPPKRDVLDE 1250
+G FPFRQRPVQNLPNDGPPQEAVNQDPNNNFQEGPDPEIEDPNHLPP RDVLDE
Sbjct: 161 VGWFPFRQRPVQNLPNDGPPQEAVNQDPNNNFQEGPDPEIEDPNHLPPDRDVLDE 215
>ref|XP_003134841.2| PREDICTED: homocysteine-responsive endoplasmic reticulum-resident
ubiquitin-like domain member 2 protein-like [Sus scrofa].
Length = 406
Score = 166 bits (419), Expect = 3e-41
Identities = 108/333 (32%), Positives = 157/333 (47%), Gaps = 22/333 (6%)
Frame = +2
Query: 197 PVTLLVKSPNQRHRDLELSGDRSWSVGRLKAHLSRVYPERPRPEDQRLIYSGKXXXXXXX 376
PVTL++K+PNQ++ D +S +W+VG+LK HLS VYP +P +DQRL+YSG+
Sbjct: 9 PVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQ 68
Query: 377 XXXXXPKQEKRHVLHLVCSVKSPSKIPEASTKVAESREQPAGLNQXXXXXXXXXXXLRQR 556
KQ++ H++HLVC+ ++P P++ST ES E A + +
Sbjct: 69 LKDILRKQDEYHMVHLVCTSRTPPSSPKSSTS-RESHEASASSSNSSSDQSGSSTPSSSQ 127
Query: 557 EVVRNPSPSGWENI-------SRSDAA---------------QLAFQGLGPGFSGYTTYG 670
E + + S E + +++D A QL Q + GF Y +
Sbjct: 128 ETLSLAASSSSEGLRQRTLPQAQTDPAQSHQFPYVMQGNVDNQLPGQAVPAGFPVYPAFS 187
Query: 671 WLQLSWFXXXXXXXXXXXXXXXTAASGAFVPSPSAQEIPVVSXXXXXXIHNQFPAEXXXX 850
LQL W+ AA A S + P S P E
Sbjct: 188 PLQLLWW---QQMYAHQYYMHYQAAVSAQATSNANSAQPAASQPLNLA---HVPGEEPPP 241
Query: 851 XXXXXXXXXXXXGANQNLRMNAQGGPIVEEDDEINRDWLDWTYSAATFSVFLCILYFYSS 1030
N+N++MNAQGGP++ E+D NRDWLDW Y + ++ L I+YFYSS
Sbjct: 242 APNLVAQENRP--MNENVQMNAQGGPVLNEED-FNRDWLDWMYMFSRAAILLSIVYFYSS 298
Query: 1031 LSRFLMVMGATIVMYLHHVGWVSVSTEASSELA 1129
SRF+MVMGA +++YLH GW E + A
Sbjct: 299 FSRFIMVMGAMLLVYLHQAGWFPFRQEGGQQQA 331
>ref|XP_003361492.1| PREDICTED: homocysteine-responsive endoplasmic reticulum-resident
ubiquitin-like domain member 1 protein-like, partial
[Sus scrofa].
Length = 160
Score = 137 bits (345), Expect = 1e-32
Identities = 71/94 (75%), Positives = 71/94 (75%)
Frame = +2
Query: 320 RPEDQRLIYSGKXXXXXXXXXXXXPKQEKRHVLHLVCSVKSPSKIPEASTKVAESREQPA 499
RPEDQRLIYSGK PKQEKRHVLHLVCSVKSPSKIPEASTKVAESREQPA
Sbjct: 67 RPEDQRLIYSGKLLLDQQCLRDLLPKQEKRHVLHLVCSVKSPSKIPEASTKVAESREQPA 126
Query: 500 GLNQXXXXXXXXXXXLRQREVVRNPSPSGWENIS 601
GLNQ LRQREVVRNPSPSGWENIS
Sbjct: 127 GLNQGPSPGDSSSDGLRQREVVRNPSPSGWENIS 160
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,144,153
Number of extensions: 1065705
Number of successful extensions: 6008
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5815
Number of HSP's successfully gapped: 5
Length of query: 416
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 315
Effective length of database: 8,829,335
Effective search space: 2781240525
Effective search space used: 2781240525
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001853
(1250 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL895201.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 698 0.0
gb|GL894488.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 268 7e-69
>gb|GL895201.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3790
Length = 8136
Score = 698 bits (352), Expect = 0.0
Identities = 352/352 (100%)
Strand = Plus / Plus
Query: 727 tttagcagccactgctgcgtcaggggctttcgtcccctctccaagtgcacaagagatacc 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3761 tttagcagccactgctgcgtcaggggctttcgtcccctctccaagtgcacaagagatacc 3820
Query: 787 tgtggtctctgcacccgctccagcccctatccacaaccagtttccagctgaaaaccagcc 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3821 tgtggtctctgcacccgctccagcccctatccacaaccagtttccagctgaaaaccagcc 3880
Query: 847 agccaatcagaatgctgctcctcaagtggtggttaatcctggggccaatcagaatttgcg 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3881 agccaatcagaatgctgctcctcaagtggtggttaatcctggggccaatcagaatttgcg 3940
Query: 907 gatgaatgcacaaggtggccctattgtggaagaagatgatgagataaatcgagattggtt 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3941 gatgaatgcacaaggtggccctattgtggaagaagatgatgagataaatcgagattggtt 4000
Query: 967 ggattggacctattcagcagctacattttctgtttttctctgtatcctctacttctactc 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4001 ggattggacctattcagcagctacattttctgtttttctctgtatcctctacttctactc 4060
Query: 1027 ttccctgagcagattcctcatggtcatgggggccaccattgttatgtacctg 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4061 ttccctgagcagattcctcatggtcatgggggccaccattgttatgtacctg 4112
Score = 244 bits (123), Expect = 1e-61
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 601 caggtcagacgctgcccagctggcattccaaggcctggggcctggtttctcaggctacac 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3002 caggtcagacgctgcccagctggcattccaaggcctggggcctggtttctcaggctacac 3061
Query: 661 aacgtacggatggctgcagctctcctggttccagcagatgtatgcacggcagtactacat 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3062 aacgtacggatggctgcagctctcctggttccagcagatgtatgcacggcagtactacat 3121
Query: 721 gca 723
|||
Sbjct: 3122 gca 3124
Score = 190 bits (96), Expect = 1e-45
Identities = 106/108 (98%), Gaps = 1/108 (0%)
Strand = Plus / Plus
Query: 1078 gcatcacgttgggtgggtttccgtttcgacagaggccagttcagaacttgcccaacgatg 1137
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 5213 gcatcacgttgggtgg-tttccgtttcgacagaggccagttcagaacttgcccaacgacg 5271
Query: 1138 gtcctcctcaggaagctgtgaaccaggaccccaacaataacttccagg 1185
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5272 gtcctcctcaggaagctgtgaaccaggaccccaacaataacttccagg 5319
Score = 119 bits (60), Expect = 4e-24
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 1183 aggaaggccccgatcctgaaatcgaagaccccaaccacctgcctccaaaaagggacgtac 1242
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 6042 aggaaggccccgatcctgaaatcgaagaccccaaccacctgcctccagacagggacgtac 6101
Query: 1243 tggatgaa 1250
||||||||
Sbjct: 6102 tggatgaa 6109
>gb|GL894488.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3148
Length = 6348
Score = 268 bits (135), Expect = 7e-69
Identities = 135/135 (100%)
Strand = Plus / Minus
Query: 471 aggttgctgaatccagagaacagcccgccggtcttaatcagggaccgtctcctggggatt 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 aggttgctgaatccagagaacagcccgccggtcttaatcagggaccgtctcctggggatt 120
Query: 531 cctcaagtgatggtttaaggcaaagggaggttgttcggaacccttctccctctggatggg 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 cctcaagtgatggtttaaggcaaagggaggttgttcggaacccttctccctctggatggg 60
Query: 591 agaacatctccaggt 605
|||||||||||||||
Sbjct: 59 agaacatctccaggt 45
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 396 agcaggaaaaacgacatgttttgcatctggtgtgcagtgtgaagagtccttcaaaaatac 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1404 agcaggaaaaacgacatgttttgcatctggtgtgcagtgtgaagagtccttcaaaaatac 1345
Query: 456 cagaagctagcacaaaggt 474
|||||||||||||||||||
Sbjct: 1344 cagaagctagcacaaaggt 1326
Score = 149 bits (75), Expect = 4e-33
Identities = 78/79 (98%)
Strand = Plus / Minus
Query: 319 gcgtccagaggaccagaggttaatttattccgggaagctgttgttggatcaccagtgtct 378
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1568 gcgtccagaggaccagaggttaatttattccgggaagctgttgttggatcagcagtgtct 1509
Query: 379 cagggacttgcttcccaag 397
|||||||||||||||||||
Sbjct: 1508 cagggacttgcttcccaag 1490
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,589,844
Number of extensions: 165
Number of successful extensions: 165
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 7
Length of query: 1250
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1229
Effective length of database: 2,808,413,156
Effective search space: 3451539768724
Effective search space used: 3451539768724
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)