Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001855
(1373 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095735.1| homocysteine-responsive endoplasmic reticulu... 489 e-161
Alignment gi|NP_001069026.1| homocysteine-responsive endoplasmic reticulu... 149 6e-36
>ref|NP_001095735.1| homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like
domain member 1 protein [Bos taurus].
Length = 389
Score = 489 bits (1259), Expect(2) = e-161
Identities = 247/342 (72%), Positives = 260/342 (76%)
Frame = +3
Query: 210 PRLPRAPEDQRLIYSGKXXXXXXXXXXXXPKQEKRHVLHLVCSVKSPSKIPEASTKVAES 389
P PR PEDQRLIYSGK PKQEKRHV+HLVC+VKS SK+PEA KVAES
Sbjct: 44 PERPR-PEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVMHLVCNVKSTSKMPEAGAKVAES 102
Query: 390 REQPAGLNQXXXXXXXXXXXLRQREVVRNPSPSGWENISRSDAAQLAFQGLGPGFSGYTT 569
EQP GLNQ LRQREV+RNPSPSGWE+ISR +AAQ AFQGLGPGFSGYTT
Sbjct: 103 TEQPTGLNQGQSPGDSSSDGLRQREVLRNPSPSGWESISRPEAAQPAFQGLGPGFSGYTT 162
Query: 570 YGWLQLSWFXXXXXXXXXXXXXXXTAASGAFVPSPSAQEIPVVSXXXXXXIHNQFPAEXX 749
YGWLQLSWF TAASGAFVP+PSAQEIPVV+ IHNQFPAE
Sbjct: 163 YGWLQLSWFQQMYARQYYMQYLAATAASGAFVPAPSAQEIPVVTAPTPAPIHNQFPAENQ 222
Query: 750 XXXXXXXXXXXXXXGANQNLRMNAQGGPIVEEDDEINRDWLDWTYSAATFSVFLCILYFY 929
GANQNLRMNAQGGPIVEEDDEINRDWLDWTYSAATFSVFL ILYFY
Sbjct: 223 PANQNAAPQVVVNPGANQNLRMNAQGGPIVEEDDEINRDWLDWTYSAATFSVFLSILYFY 282
Query: 930 SSLSRFLMVMGATIVMYLHHVGWFPFRQRPVQNLPNDGPPQEAVNQDPNNNFQEGPDPEI 1109
SSLSRFLMVMGAT+VMYL+HVGWFPFRQRPVQN PNDG PQEAVNQDPNNNFQ PDPE
Sbjct: 283 SSLSRFLMVMGATVVMYLNHVGWFPFRQRPVQNFPNDGGPQEAVNQDPNNNFQGDPDPES 342
Query: 1110 EDPNHLPPDRDVLDEEQTSPSFMSTAWLVFQTFFASLSSEAP 1235
EDP+HLPPDRDV +EQTS SFMSTAWLVF+TFFASL E P
Sbjct: 343 EDPSHLPPDRDVRGDEQTSTSFMSTAWLVFKTFFASLLPEGP 384
Score = 98.2 bits (243), Expect(2) = e-161
Identities = 46/48 (95%), Positives = 46/48 (95%)
Frame = +1
Query: 91 MEPEPEPVTLLVKSPNQRHRDLELSGDRSWSVGRLKAHLSRVYPERPR 234
MEPEPEPVTLLVKSPNQRHRDLELS DRSWSVGRLKAH SRVYPERPR
Sbjct: 1 MEPEPEPVTLLVKSPNQRHRDLELSADRSWSVGRLKAHQSRVYPERPR 48
>ref|NP_001069026.1| homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like
domain member 2 protein [Bos taurus].
Length = 406
Score = 149 bits (376), Expect = 6e-36
Identities = 112/379 (29%), Positives = 166/379 (43%), Gaps = 34/379 (8%)
Frame = +3
Query: 201 PSEPRLPRAPEDQRLIYSGKXXXXXXXXXXXXPKQEKRHVLHLVCSVKSPSKIPEASTKV 380
PS+P +DQRL+YSG+ KQ++ H++HLVC+ ++P P++ST
Sbjct: 46 PSKP----LTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLVCTSRTPPSSPKSSTN- 100
Query: 381 AESREQPAGLNQXXXXXXXXXXXLRQREVVRNPSPSGWENI-------SRSDAAQ----- 524
ES E A + +E + + S E + +++D AQ
Sbjct: 101 RESHEALASNSNSSSDQSGSSTPSSSQETLTLATSSSSEGLRQRTLPQAQTDPAQSHQVP 160
Query: 525 ----------LAFQGLGPGFSGYTTYGWLQLSWFXXXXXXXXXXXXXXXTAASGAFVPSP 674
L Q + GF Y + LQ+ W+ +A +P
Sbjct: 161 YVMQGNVDNQLPGQAVPAGFPVYPAFNPLQMLWWQQMYAHQYYMQYQAAVSAQATSNANP 220
Query: 675 SAQEIPVVSXXXXXXIHNQFPAEXXXXXXXXXXXXXXXXGANQNLRMNAQGGPIVEEDDE 854
+ PA N+N++MNAQGGP++ E+D
Sbjct: 221 AQPAATQPLNLAHVPGEEPPPAPNLVAQENRPM--------NENVQMNAQGGPVLNEED- 271
Query: 855 INRDWLDWTYSAATFSVFLCILYFYSSLSRFLMVMGATIVMYLHHVGWFPFRQRPVQN-L 1031
NRDWLDW Y+ + ++ L I+YFYSS SRF+MVMGA +++YLH GWFPFRQ VQ+
Sbjct: 272 FNRDWLDWMYTFSRAAILLSIVYFYSSFSRFIMVMGAMLLVYLHQAGWFPFRQEGVQHQA 331
Query: 1032 PNDGPPQEAVNQDPNNNFQEGPDPEIEDPNHLPPDRDVLDEEQ-----------TSPSFM 1178
PN+ N + NN+ Q + E+E+ L D L++E P M
Sbjct: 332 PNN-------NAEVNNDVQNANNLELEEMERLMDDG--LEDESGEDAGEDASAIQRPGLM 382
Query: 1179 STAWLVFQTFFASLSSEAP 1235
++AW TFF SL E P
Sbjct: 383 ASAWSFITTFFTSLIPEGP 401
Score = 56.6 bits (135), Expect = 5e-08
Identities = 23/44 (52%), Positives = 34/44 (77%)
Frame = +1
Query: 109 PVTLLVKSPNQRHRDLELSGDRSWSVGRLKAHLSRVYPERPRTR 240
PVTL++K+PNQ++ D +S +W+VG+LK HLS VYP +P T+
Sbjct: 9 PVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTK 52
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 56,662,953
Number of extensions: 1687228
Number of successful extensions: 8244
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8087
Number of HSP's successfully gapped: 4
Length of query: 457
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 351
Effective length of database: 14,174,046
Effective search space: 4975090146
Effective search space used: 4975090146
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001855
(1373 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851041.1| PREDICTED: similar to Homocysteine-responsive e... 498 e-164
Alignment gi|XP_535290.2| PREDICTED: similar to Homocysteine-responsive e... 335 5e-92
Alignment gi|XP_862968.1| PREDICTED: similar to homocysteine-inducible, e... 122 1e-51
Alignment gi|XP_532515.2| PREDICTED: similar to CG14536-PA, isoform A iso... 148 1e-35
Alignment gi|XP_865572.1| PREDICTED: similar to CG14536-PA, isoform A iso... 57 5e-08
>ref|XP_851041.1| PREDICTED: similar to Homocysteine-responsive endoplasmic
reticulum-resident ubiquitin-like domain member 1 protein
(Methyl methanesulfonate (MMF)-inducible fragment protein
1) isoform 2 [Canis familiaris].
Length = 393
Score = 498 bits (1282), Expect(2) = e-164
Identities = 252/342 (73%), Positives = 261/342 (76%)
Frame = +3
Query: 210 PRLPRAPEDQRLIYSGKXXXXXXXXXXXXPKQEKRHVLHLVCSVKSPSKIPEASTKVAES 389
P PR PEDQRLIYSGK PKQEKRHVLHLVC+VK PSK + S KVAES
Sbjct: 48 PERPR-PEDQRLIYSGKLLLDHQYLKDLLPKQEKRHVLHLVCNVKGPSKTSDTSAKVAES 106
Query: 390 REQPAGLNQXXXXXXXXXXXLRQREVVRNPSPSGWENISRSDAAQLAFQGLGPGFSGYTT 569
EQPAGL+Q LRQR+V+RN SPSGWENISR +AAQ AFQGLGPGFSGYTT
Sbjct: 107 TEQPAGLHQGQYPGDSSGDSLRQRDVLRNLSPSGWENISRPEAAQPAFQGLGPGFSGYTT 166
Query: 570 YGWLQLSWFXXXXXXXXXXXXXXXTAASGAFVPSPSAQEIPVVSXXXXXXIHNQFPAEXX 749
YGWLQLSWF TAASGAFV SPSAQEIPVVS IHNQFPAE
Sbjct: 167 YGWLQLSWFQQMYARQYYMQYLAATAASGAFVASPSAQEIPVVSAPAPAPIHNQFPAENQ 226
Query: 750 XXXXXXXXXXXXXXGANQNLRMNAQGGPIVEEDDEINRDWLDWTYSAATFSVFLCILYFY 929
GANQNLRMNAQGGPIVEEDDEINRDWLDWTYSAATFSVFL ILYFY
Sbjct: 227 PANQNAAPPVVVNPGANQNLRMNAQGGPIVEEDDEINRDWLDWTYSAATFSVFLSILYFY 286
Query: 930 SSLSRFLMVMGATIVMYLHHVGWFPFRQRPVQNLPNDGPPQEAVNQDPNNNFQEGPDPEI 1109
SSLSRFLMVMGAT+VMYLHHVGWFPFRQRPVQN PNDGPP EAVNQDPNNN QEG DPEI
Sbjct: 287 SSLSRFLMVMGATVVMYLHHVGWFPFRQRPVQNFPNDGPPHEAVNQDPNNNLQEGLDPEI 346
Query: 1110 EDPNHLPPDRDVLDEEQTSPSFMSTAWLVFQTFFASLSSEAP 1235
EDPNHLPPDRDVLD+EQTSPSFMSTAWLVF+TFFASL E P
Sbjct: 347 EDPNHLPPDRDVLDDEQTSPSFMSTAWLVFKTFFASLLPEGP 388
Score = 100 bits (250), Expect(2) = e-164
Identities = 47/47 (100%), Positives = 47/47 (100%)
Frame = +1
Query: 94 EPEPEPVTLLVKSPNQRHRDLELSGDRSWSVGRLKAHLSRVYPERPR 234
EPEPEPVTLLVKSPNQRHRDLELSGDRSWSVGRLKAHLSRVYPERPR
Sbjct: 6 EPEPEPVTLLVKSPNQRHRDLELSGDRSWSVGRLKAHLSRVYPERPR 52
>ref|XP_535290.2| PREDICTED: similar to Homocysteine-responsive endoplasmic
reticulum-resident ubiquitin-like domain member 1 protein
(Methyl methanesulfonate (MMF)-inducible fragment protein
1) isoform 1 [Canis familiaris].
Length = 216
Score = 335 bits (860), Expect = 5e-92
Identities = 164/198 (82%), Positives = 167/198 (84%)
Frame = +3
Query: 642 TAASGAFVPSPSAQEIPVVSXXXXXXIHNQFPAEXXXXXXXXXXXXXXXXGANQNLRMNA 821
TAASGAFV SPSAQEIPVVS IHNQFPAE GANQNLRMNA
Sbjct: 14 TAASGAFVASPSAQEIPVVSAPAPAPIHNQFPAENQPANQNAAPPVVVNPGANQNLRMNA 73
Query: 822 QGGPIVEEDDEINRDWLDWTYSAATFSVFLCILYFYSSLSRFLMVMGATIVMYLHHVGWF 1001
QGGPIVEEDDEINRDWLDWTYSAATFSVFL ILYFYSSLSRFLMVMGAT+VMYLHHVGWF
Sbjct: 74 QGGPIVEEDDEINRDWLDWTYSAATFSVFLSILYFYSSLSRFLMVMGATVVMYLHHVGWF 133
Query: 1002 PFRQRPVQNLPNDGPPQEAVNQDPNNNFQEGPDPEIEDPNHLPPDRDVLDEEQTSPSFMS 1181
PFRQRPVQN PNDGPP EAVNQDPNNN QEG DPEIEDPNHLPPDRDVLD+EQTSPSFMS
Sbjct: 134 PFRQRPVQNFPNDGPPHEAVNQDPNNNLQEGLDPEIEDPNHLPPDRDVLDDEQTSPSFMS 193
Query: 1182 TAWLVFQTFFASLSSEAP 1235
TAWLVF+TFFASL E P
Sbjct: 194 TAWLVFKTFFASLLPEGP 211
>ref|XP_862968.1| PREDICTED: similar to homocysteine-inducible, endoplasmic reticulum
stress-inducible, ubiquitin-like domain member 1 isoform
3 [Canis familiaris].
Length = 168
Score = 122 bits (306), Expect(2) = 1e-51
Identities = 66/107 (61%), Positives = 72/107 (67%)
Frame = +3
Query: 210 PRLPRAPEDQRLIYSGKXXXXXXXXXXXXPKQEKRHVLHLVCSVKSPSKIPEASTKVAES 389
P PR PEDQRLIYSGK PKQEKRHVLHLVC+VK PSK + S KVAES
Sbjct: 48 PERPR-PEDQRLIYSGKLLLDHQYLKDLLPKQEKRHVLHLVCNVKGPSKTSDTSAKVAES 106
Query: 390 REQPAGLNQXXXXXXXXXXXLRQREVVRNPSPSGWENISRSDAAQLA 530
EQPAGL+Q LRQR+V+RN SPSGWENISR +AAQ A
Sbjct: 107 TEQPAGLHQGQYPGDSSGDSLRQRDVLRNLSPSGWENISRPEAAQPA 153
Score = 100 bits (250), Expect(2) = 1e-51
Identities = 47/47 (100%), Positives = 47/47 (100%)
Frame = +1
Query: 94 EPEPEPVTLLVKSPNQRHRDLELSGDRSWSVGRLKAHLSRVYPERPR 234
EPEPEPVTLLVKSPNQRHRDLELSGDRSWSVGRLKAHLSRVYPERPR
Sbjct: 6 EPEPEPVTLLVKSPNQRHRDLELSGDRSWSVGRLKAHLSRVYPERPR 52
>ref|XP_532515.2| PREDICTED: similar to CG14536-PA, isoform A isoform 1 [Canis
familiaris].
Length = 406
Score = 148 bits (373), Expect = 1e-35
Identities = 114/379 (30%), Positives = 166/379 (43%), Gaps = 34/379 (8%)
Frame = +3
Query: 201 PSEPRLPRAPEDQRLIYSGKXXXXXXXXXXXXPKQEKRHVLHLVCSVKSPSKIPEASTKV 380
PS+P +DQRL+YSG+ KQ++ H++HLVC+ ++P P++ST
Sbjct: 46 PSKP----LTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLVCTSRTPPSSPKSST-T 100
Query: 381 AESREQPAGLNQXXXXXXXXXXXLRQREVVRNPSPSGWENI-------SRSDAAQ----- 524
ES E A + +E + + S E + +++D AQ
Sbjct: 101 RESLEALASSSNSSSDQSGSTTPSSSQETLSLAASSSSEGLRQRTLPQAQTDPAQSHQFP 160
Query: 525 ----------LAFQGLGPGFSGYTTYGWLQLSWFXXXXXXXXXXXXXXXTAASGAFVPSP 674
L Q + GF Y + LQ+ W+ +A +P
Sbjct: 161 YVMQGNVDNQLPGQAIPAGFPVYPAFSPLQMLWWQQMYAHQYYMQYQAAVSAQATSNANP 220
Query: 675 SAQEIPVVSXXXXXXIHNQFPAEXXXXXXXXXXXXXXXXGANQNLRMNAQGGPIVEEDDE 854
+ P S P E N+N++MNAQGGP++ E+D
Sbjct: 221 AQ---PAASQPLNLA---HVPGEEPPPAPNLVAQENRPM--NENVQMNAQGGPVLNEED- 271
Query: 855 INRDWLDWTYSAATFSVFLCILYFYSSLSRFLMVMGATIVMYLHHVGWFPFRQR-PVQNL 1031
NRDWLDW Y+ + ++ L I+YFYSS SRF+MVMGA +++YLH GWFPFRQ Q
Sbjct: 272 FNRDWLDWMYTFSRAAILLSIVYFYSSFSRFIMVMGAMLLVYLHQAGWFPFRQEGGQQQA 331
Query: 1032 PNDGPPQEAVNQDPNNNFQEGPDPEIEDPNHLPPDRDVLDEEQ-----------TSPSFM 1178
PN+ N + NN+ Q + E+E+ L D L+EE P M
Sbjct: 332 PNN-------NAEVNNDGQNANNLELEEMERLMDDG--LEEESGEDAGEDASAVQRPGLM 382
Query: 1179 STAWLVFQTFFASLSSEAP 1235
++AW TFF SL E P
Sbjct: 383 ASAWSFITTFFTSLIPEGP 401
Score = 56.6 bits (135), Expect = 5e-08
Identities = 23/44 (52%), Positives = 34/44 (77%)
Frame = +1
Query: 109 PVTLLVKSPNQRHRDLELSGDRSWSVGRLKAHLSRVYPERPRTR 240
PVTL++K+PNQ++ D +S +W+VG+LK HLS VYP +P T+
Sbjct: 9 PVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTK 52
>ref|XP_865572.1| PREDICTED: similar to CG14536-PA, isoform A isoform 2 [Canis
familiaris].
Length = 205
Score = 56.6 bits (135), Expect = 5e-08
Identities = 23/44 (52%), Positives = 34/44 (77%)
Frame = +1
Query: 109 PVTLLVKSPNQRHRDLELSGDRSWSVGRLKAHLSRVYPERPRTR 240
PVTL++K+PNQ++ D +S +W+VG+LK HLS VYP +P T+
Sbjct: 9 PVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTK 52
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 59,047,663
Number of extensions: 1734562
Number of successful extensions: 8324
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 8226
Number of HSP's successfully gapped: 8
Length of query: 457
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 351
Effective length of database: 15,340,888
Effective search space: 5384651688
Effective search space used: 5384651688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001855
(1373 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055500.1| homocysteine-responsive endoplasmic reticulum-r... 487 e-159
Alignment gi|NP_001010989.1| homocysteine-responsive endoplasmic reticulu... 481 e-157
Alignment gi|NP_001010990.1| homocysteine-responsive endoplasmic reticulu... 431 e-142
Alignment gi|NP_071768.3| homocysteine-responsive endoplasmic reticulum-r... 145 1e-34
>ref|NP_055500.1| homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like
domain member 1 protein isoform 1 [Homo sapiens].
Length = 391
Score = 487 bits (1254), Expect(2) = e-159
Identities = 246/342 (71%), Positives = 256/342 (74%)
Frame = +3
Query: 210 PRLPRAPEDQRLIYSGKXXXXXXXXXXXXPKQEKRHVLHLVCSVKSPSKIPEASTKVAES 389
P PR PEDQRLIYSGK PKQEKRHVLHLVC+VKSPSK+PE + KVAES
Sbjct: 46 PERPR-PEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCNVKSPSKMPEINAKVAES 104
Query: 390 REQPAGLNQXXXXXXXXXXXLRQREVVRNPSPSGWENISRSDAAQLAFQGLGPGFSGYTT 569
E+PAG N+ LRQREV+RN S GWENISR +AAQ AFQGLGPGFSGYT
Sbjct: 105 TEEPAGSNRGQYPEDSSSDGLRQREVLRNLSSPGWENISRPEAAQQAFQGLGPGFSGYTP 164
Query: 570 YGWLQLSWFXXXXXXXXXXXXXXXTAASGAFVPSPSAQEIPVVSXXXXXXIHNQFPAEXX 749
YGWLQLSWF TAASGAFVP PSAQEIPVVS IHNQFPAE
Sbjct: 165 YGWLQLSWFQQIYARQYYMQYLAATAASGAFVPPPSAQEIPVVSAPAPAPIHNQFPAENQ 224
Query: 750 XXXXXXXXXXXXXXGANQNLRMNAQGGPIVEEDDEINRDWLDWTYSAATFSVFLCILYFY 929
GANQNLRMNAQGGPIVEEDDEINRDWLDWTYSAATFSVFL ILYFY
Sbjct: 225 PANQNAAPQVVVNPGANQNLRMNAQGGPIVEEDDEINRDWLDWTYSAATFSVFLSILYFY 284
Query: 930 SSLSRFLMVMGATIVMYLHHVGWFPFRQRPVQNLPNDGPPQEAVNQDPNNNFQEGPDPEI 1109
SSLSRFLMVMGAT+VMYLHHVGWFPFR RPVQN PNDGPP + VNQDPNNN QEG DPE
Sbjct: 285 SSLSRFLMVMGATVVMYLHHVGWFPFRPRPVQNFPNDGPPPDVVNQDPNNNLQEGTDPET 344
Query: 1110 EDPNHLPPDRDVLDEEQTSPSFMSTAWLVFQTFFASLSSEAP 1235
EDPNHLPPDRDVLD EQTSPSFMSTAWLVF+TFFASL E P
Sbjct: 345 EDPNHLPPDRDVLDGEQTSPSFMSTAWLVFKTFFASLLPEGP 386
Score = 94.4 bits (233), Expect(2) = e-159
Identities = 44/47 (93%), Positives = 44/47 (93%)
Frame = +1
Query: 94 EPEPEPVTLLVKSPNQRHRDLELSGDRSWSVGRLKAHLSRVYPERPR 234
E EPEPVTLLVKSPNQRHRDLELSGDR WSVG LKAHLSRVYPERPR
Sbjct: 4 ETEPEPVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPR 50
>ref|NP_001010989.1| homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like
domain member 1 protein isoform 2 [Homo sapiens].
Length = 390
Score = 481 bits (1237), Expect(2) = e-157
Identities = 245/342 (71%), Positives = 255/342 (74%)
Frame = +3
Query: 210 PRLPRAPEDQRLIYSGKXXXXXXXXXXXXPKQEKRHVLHLVCSVKSPSKIPEASTKVAES 389
P PR PEDQRLIYSGK PK EKRHVLHLVC+VKSPSK+PE + KVAES
Sbjct: 46 PERPR-PEDQRLIYSGKLLLDHQCLRDLLPK-EKRHVLHLVCNVKSPSKMPEINAKVAES 103
Query: 390 REQPAGLNQXXXXXXXXXXXLRQREVVRNPSPSGWENISRSDAAQLAFQGLGPGFSGYTT 569
E+PAG N+ LRQREV+RN S GWENISR +AAQ AFQGLGPGFSGYT
Sbjct: 104 TEEPAGSNRGQYPEDSSSDGLRQREVLRNLSSPGWENISRPEAAQQAFQGLGPGFSGYTP 163
Query: 570 YGWLQLSWFXXXXXXXXXXXXXXXTAASGAFVPSPSAQEIPVVSXXXXXXIHNQFPAEXX 749
YGWLQLSWF TAASGAFVP PSAQEIPVVS IHNQFPAE
Sbjct: 164 YGWLQLSWFQQIYARQYYMQYLAATAASGAFVPPPSAQEIPVVSAPAPAPIHNQFPAENQ 223
Query: 750 XXXXXXXXXXXXXXGANQNLRMNAQGGPIVEEDDEINRDWLDWTYSAATFSVFLCILYFY 929
GANQNLRMNAQGGPIVEEDDEINRDWLDWTYSAATFSVFL ILYFY
Sbjct: 224 PANQNAAPQVVVNPGANQNLRMNAQGGPIVEEDDEINRDWLDWTYSAATFSVFLSILYFY 283
Query: 930 SSLSRFLMVMGATIVMYLHHVGWFPFRQRPVQNLPNDGPPQEAVNQDPNNNFQEGPDPEI 1109
SSLSRFLMVMGAT+VMYLHHVGWFPFR RPVQN PNDGPP + VNQDPNNN QEG DPE
Sbjct: 284 SSLSRFLMVMGATVVMYLHHVGWFPFRPRPVQNFPNDGPPPDVVNQDPNNNLQEGTDPET 343
Query: 1110 EDPNHLPPDRDVLDEEQTSPSFMSTAWLVFQTFFASLSSEAP 1235
EDPNHLPPDRDVLD EQTSPSFMSTAWLVF+TFFASL E P
Sbjct: 344 EDPNHLPPDRDVLDGEQTSPSFMSTAWLVFKTFFASLLPEGP 385
Score = 94.4 bits (233), Expect(2) = e-157
Identities = 44/47 (93%), Positives = 44/47 (93%)
Frame = +1
Query: 94 EPEPEPVTLLVKSPNQRHRDLELSGDRSWSVGRLKAHLSRVYPERPR 234
E EPEPVTLLVKSPNQRHRDLELSGDR WSVG LKAHLSRVYPERPR
Sbjct: 4 ETEPEPVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPR 50
>ref|NP_001010990.1| homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like
domain member 1 protein isoform 3 [Homo sapiens].
Length = 366
Score = 431 bits (1109), Expect(2) = e-142
Identities = 226/342 (66%), Positives = 233/342 (68%)
Frame = +3
Query: 210 PRLPRAPEDQRLIYSGKXXXXXXXXXXXXPKQEKRHVLHLVCSVKSPSKIPEASTKVAES 389
P PR PEDQRLIYSGK P KVAES
Sbjct: 46 PERPR-PEDQRLIYSGKLLLDHQCLRDLLP-------------------------KVAES 79
Query: 390 REQPAGLNQXXXXXXXXXXXLRQREVVRNPSPSGWENISRSDAAQLAFQGLGPGFSGYTT 569
E+PAG N+ LRQREV+RN S GWENISR +AAQ AFQGLGPGFSGYT
Sbjct: 80 TEEPAGSNRGQYPEDSSSDGLRQREVLRNLSSPGWENISRPEAAQQAFQGLGPGFSGYTP 139
Query: 570 YGWLQLSWFXXXXXXXXXXXXXXXTAASGAFVPSPSAQEIPVVSXXXXXXIHNQFPAEXX 749
YGWLQLSWF TAASGAFVP PSAQEIPVVS IHNQFPAE
Sbjct: 140 YGWLQLSWFQQIYARQYYMQYLAATAASGAFVPPPSAQEIPVVSAPAPAPIHNQFPAENQ 199
Query: 750 XXXXXXXXXXXXXXGANQNLRMNAQGGPIVEEDDEINRDWLDWTYSAATFSVFLCILYFY 929
GANQNLRMNAQGGPIVEEDDEINRDWLDWTYSAATFSVFL ILYFY
Sbjct: 200 PANQNAAPQVVVNPGANQNLRMNAQGGPIVEEDDEINRDWLDWTYSAATFSVFLSILYFY 259
Query: 930 SSLSRFLMVMGATIVMYLHHVGWFPFRQRPVQNLPNDGPPQEAVNQDPNNNFQEGPDPEI 1109
SSLSRFLMVMGAT+VMYLHHVGWFPFR RPVQN PNDGPP + VNQDPNNN QEG DPE
Sbjct: 260 SSLSRFLMVMGATVVMYLHHVGWFPFRPRPVQNFPNDGPPPDVVNQDPNNNLQEGTDPET 319
Query: 1110 EDPNHLPPDRDVLDEEQTSPSFMSTAWLVFQTFFASLSSEAP 1235
EDPNHLPPDRDVLD EQTSPSFMSTAWLVF+TFFASL E P
Sbjct: 320 EDPNHLPPDRDVLDGEQTSPSFMSTAWLVFKTFFASLLPEGP 361
Score = 94.4 bits (233), Expect(2) = e-142
Identities = 44/47 (93%), Positives = 44/47 (93%)
Frame = +1
Query: 94 EPEPEPVTLLVKSPNQRHRDLELSGDRSWSVGRLKAHLSRVYPERPR 234
E EPEPVTLLVKSPNQRHRDLELSGDR WSVG LKAHLSRVYPERPR
Sbjct: 4 ETEPEPVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPR 50
>ref|NP_071768.3| homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like
domain member 2 protein [Homo sapiens].
Length = 406
Score = 145 bits (365), Expect = 1e-34
Identities = 113/379 (29%), Positives = 164/379 (43%), Gaps = 34/379 (8%)
Frame = +3
Query: 201 PSEPRLPRAPEDQRLIYSGKXXXXXXXXXXXXPKQEKRHVLHLVCSVKSPSKIPEASTKV 380
PS+P +DQRL+YSG+ KQ++ H++HLVC+ ++P P++ST
Sbjct: 46 PSKP----LTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLVCTSRTPPSSPKSSTN- 100
Query: 381 AESREQPAGLNQXXXXXXXXXXXLRQREVVRNPSPSGWENI-------SRSDAAQ----- 524
ES E A + +E + S E + +++D AQ
Sbjct: 101 RESHEALASSSNSSSDHSGSTTPSSGQETLSLAVGSSSEGLRQRTLPQAQTDQAQSHQFP 160
Query: 525 ----------LAFQGLGPGFSGYTTYGWLQLSWFXXXXXXXXXXXXXXXTAASGAFVPSP 674
Q PGF Y + LQ+ W+ +A +P
Sbjct: 161 YVMQGNVDNQFPGQAAPPGFPVYPAFSPLQMLWWQQMYAHQYYMQYQAAVSAQATSNVNP 220
Query: 675 SAQEIPVVSXXXXXXIHNQFPAEXXXXXXXXXXXXXXXXGANQNLRMNAQGGPIVEEDDE 854
+ P S P E N+N++MNAQGGP++ E+D
Sbjct: 221 TQ---PTTSQPLNLA---HVPGEEPPPAPNLVAQENRPM--NENVQMNAQGGPVLNEED- 271
Query: 855 INRDWLDWTYSAATFSVFLCILYFYSSLSRFLMVMGATIVMYLHHVGWFPFRQR-PVQNL 1031
NRDWLDW Y+ + ++ L I+YFYSS SRF+MVMGA +++YLH GWFPFRQ Q
Sbjct: 272 FNRDWLDWMYTFSRAAILLSIVYFYSSFSRFIMVMGAMLLVYLHQAGWFPFRQEGGHQQA 331
Query: 1032 PNDGPPQEAVNQDPNNNFQEGPDPEIEDPNHLPPDRDVLDEEQ-----------TSPSFM 1178
PN+ N + NN+ Q + E+E+ L D L++E P M
Sbjct: 332 PNN-------NAEVNNDGQNANNLELEEMERLMDDG--LEDESGEDGGEDASAIQRPGLM 382
Query: 1179 STAWLVFQTFFASLSSEAP 1235
++AW TFF SL E P
Sbjct: 383 ASAWSFITTFFTSLIPEGP 401
Score = 56.6 bits (135), Expect = 5e-08
Identities = 23/44 (52%), Positives = 34/44 (77%)
Frame = +1
Query: 109 PVTLLVKSPNQRHRDLELSGDRSWSVGRLKAHLSRVYPERPRTR 240
PVTL++K+PNQ++ D +S +W+VG+LK HLS VYP +P T+
Sbjct: 9 PVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTK 52
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 57,911,903
Number of extensions: 1705881
Number of successful extensions: 8001
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 7856
Number of HSP's successfully gapped: 8
Length of query: 457
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 351
Effective length of database: 14,802,980
Effective search space: 5195845980
Effective search space used: 5195845980
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001855
(1373 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_071726.1| homocysteine-responsive endoplasmic reticulum-r... 477 e-135
Alignment gi|NP_065611.1| homocysteine-responsive endoplasmic reticulum-r... 148 1e-35
>ref|NP_071726.1| homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like
domain member 1 protein [Mus musculus].
Length = 391
Score = 477 bits (1228), Expect = e-135
Identities = 251/384 (65%), Positives = 267/384 (69%), Gaps = 15/384 (3%)
Frame = +3
Query: 129 EPQPAPSRLGA----ERRPQLERGPPQGPSEPRL-----------PRAPEDQRLIYSGKX 263
EPQP P L +R LE + S RL PR PEDQRLIYSGK
Sbjct: 4 EPQPEPVTLLVKSPNQRHRDLELSGDRSWSVSRLKAHLSRVYPERPR-PEDQRLIYSGKL 62
Query: 264 XXXXXXXXXXXPKQEKRHVLHLVCSVKSPSKIPEASTKVAESREQPAGLNQXXXXXXXXX 443
PKQEKRHVLHLVC+VK+PSK+PE STK AES EQP NQ
Sbjct: 63 LLDHQCLQDLLPKQEKRHVLHLVCNVKNPSKMPETSTKGAESTEQPDNSNQTQHPGDSSS 122
Query: 444 XXLRQREVVRNPSPSGWENISRSDAAQLAFQGLGPGFSGYTTYGWLQLSWFXXXXXXXXX 623
LRQREV+RN SPSGWENISR +A Q FQGLGPGFSGYTTYGWLQLSWF
Sbjct: 123 DGLRQREVLRNLSPSGWENISRPEAVQQTFQGLGPGFSGYTTYGWLQLSWFQQIYARQYY 182
Query: 624 XXXXXXTAASGAFVPSPSAQEIPVVSXXXXXXIHNQFPAEXXXXXXXXXXXXXXXXGANQ 803
TAASG FVP+PSAQEIPVVS IHNQFPAE GANQ
Sbjct: 183 MQYLAATAASGTFVPTPSAQEIPVVSTPAPAPIHNQFPAENQPANQNAAAQAVVNPGANQ 242
Query: 804 NLRMNAQGGPIVEEDDEINRDWLDWTYSAATFSVFLCILYFYSSLSRFLMVMGATIVMYL 983
NLRMNAQGGP+VEEDDEINRDWLDWTYSAATFSVFL ILYFYSSLSRFLMVMGAT+VMYL
Sbjct: 243 NLRMNAQGGPLVEEDDEINRDWLDWTYSAATFSVFLSILYFYSSLSRFLMVMGATVVMYL 302
Query: 984 HHVGWFPFRQRPVQNLPNDGPPQEAVNQDPNNNFQEGPDPEIEDPNHLPPDRDVLDEEQT 1163
HHVGWFPFRQRPVQN P+DG P++A NQDPNNN Q G DPE+EDPN LPPDR+VLD E T
Sbjct: 303 HHVGWFPFRQRPVQNFPDDGGPRDAANQDPNNNLQGGMDPEMEDPNRLPPDREVLDPEHT 362
Query: 1164 SPSFMSTAWLVFQTFFASLSSEAP 1235
SPSFMSTAWLVF+TFFASL E P
Sbjct: 363 SPSFMSTAWLVFKTFFASLLPEGP 386
Score = 97.4 bits (241), Expect = 2e-20
Identities = 45/47 (95%), Positives = 46/47 (97%)
Frame = +1
Query: 94 EPEPEPVTLLVKSPNQRHRDLELSGDRSWSVGRLKAHLSRVYPERPR 234
EP+PEPVTLLVKSPNQRHRDLELSGDRSWSV RLKAHLSRVYPERPR
Sbjct: 4 EPQPEPVTLLVKSPNQRHRDLELSGDRSWSVSRLKAHLSRVYPERPR 50
>ref|NP_065611.1| homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like
domain member 2 protein [Mus musculus].
Length = 404
Score = 148 bits (373), Expect = 1e-35
Identities = 111/374 (29%), Positives = 162/374 (43%), Gaps = 29/374 (7%)
Frame = +3
Query: 201 PSEPRLPRAPEDQRLIYSGKXXXXXXXXXXXXPKQEKRHVLHLVCSVKSPSKIPEASTK- 377
PS+P +DQRL+YSG+ KQ++ H++HLVC+ +SP P++ST
Sbjct: 46 PSKP----LTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLVCASRSPPSSPKSSTDR 101
Query: 378 -----VAESREQ---------PAGLNQXXXXXXXXXXXLRQREVVRNPSPSGWEN----- 500
+A S P+ + LRQR + + + +
Sbjct: 102 GSHEALASSTSSNSDHSDSTTPSPSQESLSLVTGSSEGLRQRTLSQAQTDPAQSHQFPYV 161
Query: 501 ISRSDAAQLAFQGLGPGFSGYTTYGWLQLSWFXXXXXXXXXXXXXXXTAASGAFVPSPSA 680
I + Q QG+ P F Y LQ+ W+ A S S +
Sbjct: 162 IQGNVDHQFPGQGVPPAFPVYPALSPLQMLWWQQMYAHQYYMQYQ--AAVSAQATSSAGS 219
Query: 681 QEIPVVSXXXXXXIHNQFPAEXXXXXXXXXXXXXXXXGANQNLRMNAQGGPIVEEDDEIN 860
+ S + + P N+N++MNAQGGP++ E+D +N
Sbjct: 220 AQRAASSPLNLAHVPGEEPPPAPNLVAQENGPM------NENVQMNAQGGPVLNEED-LN 272
Query: 861 RDWLDWTYSAATFSVFLCILYFYSSLSRFLMVMGATIVMYLHHVGWFPFRQRPVQNLPND 1040
RDWLDW Y+ + +V L I+YFYSS SRF+MVMGA +++YLH GWFPFRQ
Sbjct: 273 RDWLDWVYTFSRAAVLLSIVYFYSSFSRFIMVMGAMLLVYLHQAGWFPFRQ-------EG 325
Query: 1041 GPPQEAVNQDPNNNFQEGPDPEIEDPNHLPPD-------RDVLDEEQTS--PSFMSTAWL 1193
G Q N D NN+ + E+E+ L D D ++ + P M++AW
Sbjct: 326 GQQQAPNNVDANNDGHNANNLELEEMERLMDDGLEDESGEDAGEDASAAQRPGLMASAWS 385
Query: 1194 VFQTFFASLSSEAP 1235
TFF SL E P
Sbjct: 386 FITTFFTSLIPEGP 399
Score = 56.6 bits (135), Expect = 4e-08
Identities = 23/44 (52%), Positives = 34/44 (77%)
Frame = +1
Query: 109 PVTLLVKSPNQRHRDLELSGDRSWSVGRLKAHLSRVYPERPRTR 240
PVTL++K+PNQ++ D +S +W+VG+LK HLS VYP +P T+
Sbjct: 9 PVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTK 52
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 48,922,091
Number of extensions: 1417598
Number of successful extensions: 6307
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6205
Number of HSP's successfully gapped: 4
Length of query: 457
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 352
Effective length of database: 12,463,779
Effective search space: 4387250208
Effective search space used: 4387250208
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001855
(1373 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361736.1| PREDICTED: homocysteine-responsive endoplasm... 410 e-115
Alignment gi|XP_003134841.2| PREDICTED: homocysteine-responsive endoplasm... 148 8e-36
Alignment gi|XP_003361492.1| PREDICTED: homocysteine-responsive endoplasm... 142 4e-34
>ref|XP_003361736.1| PREDICTED: homocysteine-responsive endoplasmic reticulum-resident
ubiquitin-like domain member 1 protein-like, partial [Sus
scrofa].
Length = 247
Score = 410 bits (1054), Expect = e-115
Identities = 201/242 (83%), Positives = 202/242 (83%)
Frame = +3
Query: 510 SDAAQLAFQGLGPGFSGYTTYGWLQLSWFXXXXXXXXXXXXXXXTAASGAFVPSPSAQEI 689
SDAAQLAFQGLGPGFSGYTTYGWLQLSWF TAASGAFVPSPSAQEI
Sbjct: 1 SDAAQLAFQGLGPGFSGYTTYGWLQLSWFQQMYARQYYMQDLAATAASGAFVPSPSAQEI 60
Query: 690 PVVSXXXXXXIHNQFPAEXXXXXXXXXXXXXXXXGANQNLRMNAQGGPIVEEDDEINRDW 869
PVVS IHNQFPAE GANQNLRMNAQGGPIVEEDDEINRDW
Sbjct: 61 PVVSAPAPAPIHNQFPAENQPANQNAAPQVVVNPGANQNLRMNAQGGPIVEEDDEINRDW 120
Query: 870 LDWTYSAATFSVFLCILYFYSSLSRFLMVMGATIVMYLHHVGWFPFRQRPVQNLPNDGPP 1049
LDWTYSAATFSVFLCILYFYSSLSRFLMVMGATIVMYLHHVGWFPFRQRPVQNLPNDGPP
Sbjct: 121 LDWTYSAATFSVFLCILYFYSSLSRFLMVMGATIVMYLHHVGWFPFRQRPVQNLPNDGPP 180
Query: 1050 QEAVNQDPNNNFQEGPDPEIEDPNHLPPDRDVLDEEQTSPSFMSTAWLVFQTFFASLSSE 1229
QEAVNQDPNNNFQEGPDPEIEDPNHLPPDRDVLDEEQTSPSFMSTAWLVF+TFFASL E
Sbjct: 181 QEAVNQDPNNNFQEGPDPEIEDPNHLPPDRDVLDEEQTSPSFMSTAWLVFKTFFASLLPE 240
Query: 1230 AP 1235
P
Sbjct: 241 GP 242
>ref|XP_003134841.2| PREDICTED: homocysteine-responsive endoplasmic reticulum-resident
ubiquitin-like domain member 2 protein-like [Sus scrofa].
Length = 406
Score = 148 bits (373), Expect = 8e-36
Identities = 116/379 (30%), Positives = 165/379 (43%), Gaps = 34/379 (8%)
Frame = +3
Query: 201 PSEPRLPRAPEDQRLIYSGKXXXXXXXXXXXXPKQEKRHVLHLVCSVKSPSKIPEASTKV 380
PS+P +DQRL+YSG+ KQ++ H++HLVC+ ++P P++ST
Sbjct: 46 PSKP----LTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLVCTSRTPPSSPKSSTS- 100
Query: 381 AESREQPAGLNQXXXXXXXXXXXLRQREVVRNPSPSGWENI-------SRSDAAQ----- 524
ES E A + +E + + S E + +++D AQ
Sbjct: 101 RESHEASASSSNSSSDQSGSSTPSSSQETLSLAASSSSEGLRQRTLPQAQTDPAQSHQFP 160
Query: 525 ----------LAFQGLGPGFSGYTTYGWLQLSWFXXXXXXXXXXXXXXXTAASGAFVPSP 674
L Q + GF Y + LQL W+ AA A S
Sbjct: 161 YVMQGNVDNQLPGQAVPAGFPVYPAFSPLQLLWWQQMYAHQYYMHYQ---AAVSAQATSN 217
Query: 675 SAQEIPVVSXXXXXXIHNQFPAEXXXXXXXXXXXXXXXXGANQNLRMNAQGGPIVEEDDE 854
+ P S P E N+N++MNAQGGP++ E+D
Sbjct: 218 ANSAQPAASQPLNLA---HVPGEEPPPAPNLVAQENRPM--NENVQMNAQGGPVLNEED- 271
Query: 855 INRDWLDWTYSAATFSVFLCILYFYSSLSRFLMVMGATIVMYLHHVGWFPFRQR-PVQNL 1031
NRDWLDW Y + ++ L I+YFYSS SRF+MVMGA +++YLH GWFPFRQ Q
Sbjct: 272 FNRDWLDWMYMFSRAAILLSIVYFYSSFSRFIMVMGAMLLVYLHQAGWFPFRQEGGQQQA 331
Query: 1032 PNDGPPQEAVNQDPNNNFQEGPDPEIEDPNHLPPDRDVLDEEQ-----------TSPSFM 1178
PN+ N + NN+ Q + E+E+ L D L++E P M
Sbjct: 332 PNN-------NAEVNNDVQNANNLELEEMERLMDDG--LEDESGEDAGEDGSAIQRPGLM 382
Query: 1179 STAWLVFQTFFASLSSEAP 1235
++AW TFF SL E P
Sbjct: 383 ASAWSFITTFFTSLIPEGP 401
Score = 56.6 bits (135), Expect = 3e-08
Identities = 23/44 (52%), Positives = 34/44 (77%)
Frame = +1
Query: 109 PVTLLVKSPNQRHRDLELSGDRSWSVGRLKAHLSRVYPERPRTR 240
PVTL++K+PNQ++ D +S +W+VG+LK HLS VYP +P T+
Sbjct: 9 PVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTK 52
>ref|XP_003361492.1| PREDICTED: homocysteine-responsive endoplasmic reticulum-resident
ubiquitin-like domain member 1 protein-like, partial
[Sus scrofa].
Length = 160
Score = 142 bits (358), Expect = 4e-34
Identities = 75/112 (66%), Positives = 77/112 (68%)
Frame = +3
Query: 171 PQLERGPPQGPSEPRLPRAPEDQRLIYSGKXXXXXXXXXXXXPKQEKRHVLHLVCSVKSP 350
P+ P P+EP PEDQRLIYSGK PKQEKRHVLHLVCSVKSP
Sbjct: 49 PRPRASPALPPTEPGADWRPEDQRLIYSGKLLLDQQCLRDLLPKQEKRHVLHLVCSVKSP 108
Query: 351 SKIPEASTKVAESREQPAGLNQXXXXXXXXXXXLRQREVVRNPSPSGWENIS 506
SKIPEASTKVAESREQPAGLNQ LRQREVVRNPSPSGWENIS
Sbjct: 109 SKIPEASTKVAESREQPAGLNQGPSPGDSSSDGLRQREVVRNPSPSGWENIS 160
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,534,462
Number of extensions: 1085513
Number of successful extensions: 5280
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5170
Number of HSP's successfully gapped: 4
Length of query: 457
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 355
Effective length of database: 8,804,438
Effective search space: 3125575490
Effective search space used: 3125575490
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001855
(1373 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL895201.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 698 0.0
gb|GL894488.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 268 7e-69
>gb|GL895201.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3790
Length = 8136
Score = 698 bits (352), Expect = 0.0
Identities = 352/352 (100%)
Strand = Plus / Plus
Query: 632 tttagcagccactgctgcgtcaggggctttcgtcccctctccaagtgcacaagagatacc 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3761 tttagcagccactgctgcgtcaggggctttcgtcccctctccaagtgcacaagagatacc 3820
Query: 692 tgtggtctctgcacccgctccagcccctatccacaaccagtttccagctgaaaaccagcc 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3821 tgtggtctctgcacccgctccagcccctatccacaaccagtttccagctgaaaaccagcc 3880
Query: 752 agccaatcagaatgctgctcctcaagtggtggttaatcctggggccaatcagaatttgcg 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3881 agccaatcagaatgctgctcctcaagtggtggttaatcctggggccaatcagaatttgcg 3940
Query: 812 gatgaatgcacaaggtggccctattgtggaagaagatgatgagataaatcgagattggtt 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3941 gatgaatgcacaaggtggccctattgtggaagaagatgatgagataaatcgagattggtt 4000
Query: 872 ggattggacctattcagcagctacattttctgtttttctctgtatcctctacttctactc 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4001 ggattggacctattcagcagctacattttctgtttttctctgtatcctctacttctactc 4060
Query: 932 ttccctgagcagattcctcatggtcatgggggccaccattgttatgtacctg 983
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4061 ttccctgagcagattcctcatggtcatgggggccaccattgttatgtacctg 4112
Score = 387 bits (195), Expect = e-104
Identities = 223/231 (96%), Gaps = 1/231 (0%)
Strand = Plus / Plus
Query: 1087 aggaaggccccgatcctgaaatcgaagaccccaaccacctgcctccagacagggacgtac 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6042 aggaaggccccgatcctgaaatcgaagaccccaaccacctgcctccagacagggacgtac 6101
Query: 1147 tggatgaagagcagaccagcccctcgttcatgagcacggcctggcttgtctttcagacgt 1206
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 6102 tggatgaagagcagaccagcccctcgttcatgagcacggcctggcttgtcttcaagacgt 6161
Query: 1207 tctttgcctccctttcttcagaa-gccccccagccatagcaaactgatggtgtttgctct 1265
|||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 6162 tctttgcctcccttcttccagaaggccccccagccatagcaaactgatggtgtttgctct 6221
Query: 1266 ctggctgccagaagctttgacaggcgtgaactggatcagttgactacagct 1316
|||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 6222 ctggctgccagaggctttgacaggcgtggactggatcagttgactacagct 6272
Score = 244 bits (123), Expect = 1e-61
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 506 caggtcagacgctgcccagctggcattccaaggcctggggcctggtttctcaggctacac 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3002 caggtcagacgctgcccagctggcattccaaggcctggggcctggtttctcaggctacac 3061
Query: 566 aacgtacggatggctgcagctctcctggttccagcagatgtatgcacggcagtactacat 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3062 aacgtacggatggctgcagctctcctggttccagcagatgtatgcacggcagtactacat 3121
Query: 626 gca 628
|||
Sbjct: 3122 gca 3124
Score = 212 bits (107), Expect = 4e-52
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 983 gcatcacgttgggtggtttccgtttcgacagaggccagttcagaacttgcccaacgacgg 1042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5213 gcatcacgttgggtggtttccgtttcgacagaggccagttcagaacttgcccaacgacgg 5272
Query: 1043 tcctcctcaggaagctgtgaaccaggaccccaacaataacttccagg 1089
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5273 tcctcctcaggaagctgtgaaccaggaccccaacaataacttccagg 5319
>gb|GL894488.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3148
Length = 6348
Score = 268 bits (135), Expect = 7e-69
Identities = 135/135 (100%)
Strand = Plus / Minus
Query: 376 aggttgctgaatccagagaacagcccgccggtcttaatcagggaccgtctcctggggatt 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 aggttgctgaatccagagaacagcccgccggtcttaatcagggaccgtctcctggggatt 120
Query: 436 cctcaagtgatggtttaaggcaaagggaggttgttcggaacccttctccctctggatggg 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 cctcaagtgatggtttaaggcaaagggaggttgttcggaacccttctccctctggatggg 60
Query: 496 agaacatctccaggt 510
|||||||||||||||
Sbjct: 59 agaacatctccaggt 45
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 301 agcaggaaaaacgacatgttttgcatctggtgtgcagtgtgaagagtccttcaaaaatac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1404 agcaggaaaaacgacatgttttgcatctggtgtgcagtgtgaagagtccttcaaaaatac 1345
Query: 361 cagaagctagcacaaaggt 379
|||||||||||||||||||
Sbjct: 1344 cagaagctagcacaaaggt 1326
Score = 135 bits (68), Expect = 7e-29
Identities = 71/72 (98%)
Strand = Plus / Minus
Query: 231 gaggaccagaggttaatttattccgggaagctgttgttggatcaccagtgtctcagggac 290
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1561 gaggaccagaggttaatttattccgggaagctgttgttggatcagcagtgtctcagggac 1502
Query: 291 ttgcttcccaag 302
||||||||||||
Sbjct: 1501 ttgcttcccaag 1490
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,934,861
Number of extensions: 196
Number of successful extensions: 196
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 7
Length of query: 1373
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1352
Effective length of database: 2,808,413,156
Effective search space: 3796974586912
Effective search space used: 3796974586912
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)