Animal-Genome cDNA 20110601C-001860


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001860
         (789 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001029609.1| carbonic anhydrase 3 [Bos taurus].                298   4e-81
Alignment   gi|XP_002692875.1| PREDICTED: carbonic anhydrase XIII [Bos taur...   208   4e-54
Alignment   gi|XP_591606.4| PREDICTED: carbonic anhydrase XIII [Bos taurus].     205   3e-53
Alignment   gi|NP_848667.1| carbonic anhydrase 2 [Bos taurus].                   197   9e-51
Alignment   gi|NP_001068934.1| carbonic anhydrase 1 [Bos taurus].                190   1e-48
Alignment   gi|XP_002692874.1| PREDICTED: carbonic anhydrase 1-like [Bos ta...   190   1e-48
Alignment   gi|XP_001250684.1| PREDICTED: carbonic anhydrase 1-like [Bos ta...   190   1e-48
Alignment   gi|NP_001179451.1| carbonic anhydrase 7 [Bos taurus].                170   1e-42
Alignment   gi|XP_002694851.1| PREDICTED: carbonic anhydrase VII-like [Bos ...   170   1e-42
Alignment   gi|NP_001074377.2| carbonic anhydrase 5B, mitochondrial [Bos ta...   138   6e-33

>ref|NP_001029609.1| carbonic anhydrase 3 [Bos taurus].
          Length = 260

 Score =  298 bits (763), Expect = 4e-81
 Identities = 134/148 (90%), Positives = 142/148 (95%)
 Frame = +2

Query: 50  MAKEWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTIL 229
           MAKEWGYADHNGPDHWHEL+P AKG+NQSPIEL+TK+I HDPSL PWTASYDPGSAKTIL
Sbjct: 1   MAKEWGYADHNGPDHWHELFPNAKGENQSPIELNTKEISHDPSLKPWTASYDPGSAKTIL 60

Query: 230 NNGKTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL 409
           NNGKTCRVVFDDTYDRSMLRGGPL A YRLRQFHLHWGSSDDHGSEH+VDGVKYAAELHL
Sbjct: 61  NNGKTCRVVFDDTYDRSMLRGGPLAAPYRLRQFHLHWGSSDDHGSEHSVDGVKYAAELHL 120

Query: 410 VHWNSKYNSFATALKHPDGVAVVGIFLK 493
           VHWNSKYNS+ATALKH DG+AVVG+FLK
Sbjct: 121 VHWNSKYNSYATALKHADGIAVVGVFLK 148



 Score =  102 bits (254), Expect = 4e-22
 Identities = 52/70 (74%), Positives = 57/70 (81%)
 Frame = +2

Query: 428 YNSFATALKHPDGVAVVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPLVRNWRPPQPI 607
           + SF T    P    +V + LKEPI VSSDQ+AKLR+LYSSAENEPPVPLVRNWRPPQPI
Sbjct: 194 HGSFTTP---PCEECIVWLLLKEPITVSSDQIAKLRTLYSSAENEPPVPLVRNWRPPQPI 250

Query: 608 KGRIVKASFK 637
           KGRIVKASFK
Sbjct: 251 KGRIVKASFK 260


>ref|XP_002692875.1| PREDICTED: carbonic anhydrase XIII [Bos taurus].
          Length = 262

 Score =  208 bits (530), Expect = 4e-54
 Identities = 100/179 (55%), Positives = 127/179 (70%), Gaps = 1/179 (0%)
 Frame = +2

Query: 62  WGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNGK 241
           WGY + +GP HW+E +PIA GD QSPIE+ TK++++D SL P    YD  SAK I N+G 
Sbjct: 6   WGYGERDGPVHWNEFFPIADGDQQSPIEIKTKEVRYDSSLRPLGIKYDASSAKIISNSGH 65

Query: 242 TCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWN 421
           +  V FDDT D+S+LRGGPLT +YRLRQFHLHWGS+DDHGSEH VDGV+YAAELH+VHWN
Sbjct: 66  SFNVDFDDTDDKSVLRGGPLTGSYRLRQFHLHWGSTDDHGSEHVVDGVRYAAELHVVHWN 125

Query: 422 S-KYNSFATALKHPDGVAVVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPLVRNWRP 595
           S KY SF  A   PDG+AV+GIFL+  I   + Q+ K+  +  S + +       N+ P
Sbjct: 126 SDKYPSFVEAAHEPDGLAVLGIFLQ--IGEHNPQLQKITDILDSIKEKGKQTRFTNFDP 182



 Score = 61.2 bits (147), Expect = 1e-09
 Identities = 30/56 (53%), Positives = 39/56 (69%)
 Frame = +2

Query: 470 AVVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPLVRNWRPPQPIKGRIVKASFK 637
           +V  I LK+PIN+SS Q+A  R+L  S E E    L+ N RPPQP+KGR V+ASF+
Sbjct: 207 SVTWIILKQPINISSQQLAAFRTLLCSREGETAAFLLSNHRPPQPLKGRKVRASFR 262


>ref|XP_591606.4| PREDICTED: carbonic anhydrase XIII [Bos taurus].
          Length = 155

 Score =  205 bits (522), Expect = 3e-53
 Identities = 94/145 (64%), Positives = 114/145 (78%), Gaps = 1/145 (0%)
 Frame = +2

Query: 62  WGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNGK 241
           WGY + +GP HW+E +PIA GD QSPIE+ TK++++D SL P    YD  SAK I N+G 
Sbjct: 6   WGYGERDGPVHWNEFFPIADGDQQSPIEIKTKEVRYDSSLRPLGIKYDASSAKIISNSGH 65

Query: 242 TCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWN 421
           +  V FDDT D+S+LRGGPLT +YRLRQFHLHWGS+DDHGSEH VDGV+YAAELH+VHWN
Sbjct: 66  SFNVDFDDTDDKSVLRGGPLTGSYRLRQFHLHWGSTDDHGSEHVVDGVRYAAELHVVHWN 125

Query: 422 S-KYNSFATALKHPDGVAVVGIFLK 493
           S KY SF  A   PDG+AV+GIFL+
Sbjct: 126 SDKYPSFVEAAHEPDGLAVLGIFLQ 150


>ref|NP_848667.1| carbonic anhydrase 2 [Bos taurus].
          Length = 260

 Score =  197 bits (501), Expect = 9e-51
 Identities = 84/148 (56%), Positives = 110/148 (74%)
 Frame = +2

Query: 50  MAKEWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTIL 229
           M+  WGY  HNGP+HWH+ +PIA G+ QSP+++ TK +  DP+L P    Y   +++ ++
Sbjct: 1   MSHHWGYGKHNGPEHWHKDFPIANGERQSPVDIDTKAVVQDPALKPLALVYGEATSRRMV 60

Query: 230 NNGKTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL 409
           NNG +  V +DD+ D+++L+ GPLT  YRL QFH HWGSSDD GSEHTVD  KYAAELHL
Sbjct: 61  NNGHSFNVEYDDSQDKAVLKDGPLTGTYRLVQFHFHWGSSDDQGSEHTVDRKKYAAELHL 120

Query: 410 VHWNSKYNSFATALKHPDGVAVVGIFLK 493
           VHWN+KY  F TA + PDG+AVVG+FLK
Sbjct: 121 VHWNTKYGDFGTAAQQPDGLAVVGVFLK 148


>ref|NP_001068934.1| carbonic anhydrase 1 [Bos taurus].
          Length = 261

 Score =  190 bits (483), Expect = 1e-48
 Identities = 89/180 (49%), Positives = 125/180 (69%), Gaps = 1/180 (0%)
 Frame = +2

Query: 59  EWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNG 238
           +WGY   NGP+HW +LYPIA G+NQSPI++ T + K DPSL P + SY+P +AK I+N G
Sbjct: 5   DWGYDGENGPEHWGKLYPIANGNNQSPIDIKTSETKRDPSLKPLSVSYNPATAKEIVNVG 64

Query: 239 KTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHW 418
            +  V F+D+ +RS+L+GGPL+ +YRLRQFH HWG +DD GSEH VDG K++AELHLVHW
Sbjct: 65  HSFHVNFEDSDNRSVLKGGPLSESYRLRQFHFHWGITDDCGSEHLVDGAKFSAELHLVHW 124

Query: 419 NS-KYNSFATALKHPDGVAVVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPLVRNWRP 595
           NS KY SFA A    DG+A++G+ +K  +  ++  + K+     + +N+       N+ P
Sbjct: 125 NSAKYPSFADAASQADGLALIGVLVK--VGQANPNLQKVLDALKAVKNKNKKAPFTNFDP 182


>ref|XP_002692874.1| PREDICTED: carbonic anhydrase 1-like [Bos taurus].
          Length = 261

 Score =  190 bits (482), Expect = 1e-48
 Identities = 89/180 (49%), Positives = 125/180 (69%), Gaps = 1/180 (0%)
 Frame = +2

Query: 59  EWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNG 238
           +WGY   NGP+HW +LYPIA G+NQSPI++ T + K DPSL P + SY+P +AK I+N G
Sbjct: 5   DWGYDGENGPEHWGKLYPIANGNNQSPIDIKTSETKRDPSLKPLSVSYNPATAKEIVNVG 64

Query: 239 KTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHW 418
            +  V F+D+ +RS+L+GGPL+ +YRLRQFH HWG +DD GSEH VDG K++AELHLVHW
Sbjct: 65  HSFHVNFEDSDNRSVLKGGPLSESYRLRQFHFHWGITDDCGSEHLVDGAKFSAELHLVHW 124

Query: 419 NS-KYNSFATALKHPDGVAVVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPLVRNWRP 595
           NS KY SFA A    DG+A++G+ +K  +  ++  + K+     + +N+       N+ P
Sbjct: 125 NSAKYPSFADAASKADGLALIGVLVK--VGQANPNLQKVLDALKAVKNKNKKAPFTNFDP 182


>ref|XP_001250684.1| PREDICTED: carbonic anhydrase 1-like [Bos taurus].
          Length = 261

 Score =  190 bits (482), Expect = 1e-48
 Identities = 89/180 (49%), Positives = 125/180 (69%), Gaps = 1/180 (0%)
 Frame = +2

Query: 59  EWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNG 238
           +WGY   NGP+HW +LYPIA G+NQSPI++ T + K DPSL P + SY+P +AK I+N G
Sbjct: 5   DWGYDGENGPEHWGKLYPIANGNNQSPIDIKTSETKRDPSLKPLSVSYNPATAKEIVNVG 64

Query: 239 KTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHW 418
            +  V F+D+ +RS+L+GGPL+ +YRLRQFH HWG +DD GSEH VDG K++AELHLVHW
Sbjct: 65  HSFHVNFEDSDNRSVLKGGPLSESYRLRQFHFHWGITDDCGSEHLVDGAKFSAELHLVHW 124

Query: 419 NS-KYNSFATALKHPDGVAVVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPLVRNWRP 595
           NS KY SFA A    DG+A++G+ +K  +  ++  + K+     + +N+       N+ P
Sbjct: 125 NSAKYPSFADAASKADGLALIGVLVK--VGQANPNLQKVLDALKAVKNKNKKAPFTNFDP 182


>ref|NP_001179451.1| carbonic anhydrase 7 [Bos taurus].
          Length = 264

 Score =  170 bits (431), Expect = 1e-42
 Identities = 76/145 (52%), Positives = 103/145 (71%), Gaps = 1/145 (0%)
 Frame = +2

Query: 62  WGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNGK 241
           WGY  ++GP HWH+LYPIA+GD QSPI + +    + PSL P   SY+  ++ +I NNG 
Sbjct: 7   WGYGQNDGPSHWHKLYPIAQGDRQSPINIVSSQAVYSPSLKPLEISYESCTSLSIANNGH 66

Query: 242 TCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWN 421
           + +V F+D+ DR+++ GGPL   YRL+QFH HWG     GSEHTVDG  + +ELHLVHWN
Sbjct: 67  SVQVDFNDSDDRTVVSGGPLDGPYRLKQFHFHWGKKHGVGSEHTVDGKSFPSELHLVHWN 126

Query: 422 S-KYNSFATALKHPDGVAVVGIFLK 493
           + KY++F  A   PDG+AVVG+FL+
Sbjct: 127 AKKYSTFGEAASAPDGLAVVGVFLE 151


>ref|XP_002694851.1| PREDICTED: carbonic anhydrase VII-like [Bos taurus].
          Length = 264

 Score =  170 bits (431), Expect = 1e-42
 Identities = 76/145 (52%), Positives = 103/145 (71%), Gaps = 1/145 (0%)
 Frame = +2

Query: 62  WGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNGK 241
           WGY  ++GP HWH+LYPIA+GD QSPI + +    + PSL P   SY+  ++ +I NNG 
Sbjct: 7   WGYGQNDGPSHWHKLYPIAQGDRQSPINIVSSQAVYSPSLKPLEISYESCTSLSIANNGH 66

Query: 242 TCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWN 421
           + +V F+D+ DR+++ GGPL   YRL+QFH HWG     GSEHTVDG  + +ELHLVHWN
Sbjct: 67  SVQVDFNDSDDRTVVSGGPLDGPYRLKQFHFHWGKKHGVGSEHTVDGKSFPSELHLVHWN 126

Query: 422 S-KYNSFATALKHPDGVAVVGIFLK 493
           + KY++F  A   PDG+AVVG+FL+
Sbjct: 127 AKKYSTFGEAASAPDGLAVVGVFLE 151


>ref|NP_001074377.2| carbonic anhydrase 5B, mitochondrial [Bos taurus].
          Length = 317

 Score =  138 bits (347), Expect = 6e-33
 Identities = 71/159 (44%), Positives = 94/159 (59%), Gaps = 3/159 (1%)
 Frame = +2

Query: 26  RPVPTKTTMAKEWGYADHNGPDH--WHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTAS 199
           R +P +        Y   N   H  W ++     G+ QSPI +  KD  +DP L P T S
Sbjct: 27  RSMPARPCSLYTCTYKSRNRVLHPLWEKVDLAPAGERQSPINIRWKDSVYDPGLQPLTIS 86

Query: 200 YDPGSAKTILNNGKTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVD 379
           YDP +   + NNG +  V F+D+ D+S++ GGPL   YRL+QFH HWG+ D  GSEHTVD
Sbjct: 87  YDPTTCLHVWNNGYSFLVEFEDSADKSVIEGGPLEHNYRLKQFHFHWGAIDAWGSEHTVD 146

Query: 380 GVKYAAELHLVHWNS-KYNSFATALKHPDGVAVVGIFLK 493
              Y AELHLVHWN+ K+  F  A    +G+AV+G+FLK
Sbjct: 147 SKCYPAELHLVHWNAVKFEHFEDAALEENGLAVIGVFLK 185


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 32,927,380
Number of extensions: 936053
Number of successful extensions: 2835
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 2801
Number of HSP's successfully gapped: 36
Length of query: 263
Length of database: 17,681,374
Length adjustment: 100
Effective length of query: 163
Effective length of database: 14,372,574
Effective search space: 2342729562
Effective search space used: 2342729562
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001860
         (789 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001138644.1| carbonic anhydrase 3 [Canis lupus familiaris].    300   1e-81
Alignment   gi|NP_001138642.1| carbonic anhydrase 2 [Canis lupus familiaris].    202   4e-52
Alignment   gi|XP_544159.1| PREDICTED: similar to Carbonic anhydrase XIII (...   201   8e-52
Alignment   gi|NP_001138643.1| carbonic anhydrase 1 [Canis lupus familiaris].    194   1e-49
Alignment   gi|XP_546892.2| PREDICTED: similar to Carbonic anhydrase VII (C...   154   9e-38
Alignment   gi|XP_543579.2| PREDICTED: similar to carbonic anhydrase VB, mi...   137   1e-32
Alignment   gi|XP_851479.1| PREDICTED: similar to carbonic anhydrase VA, mi...   122   3e-28
Alignment   gi|XP_850541.1| PREDICTED: similar to carbonic anhydrase 15 [Ca...   117   2e-26
Alignment   gi|NP_001002999.1| carbonic anhydrase 6 precursor [Canis lupus ...   100   1e-21
Alignment   gi|XP_544094.2| PREDICTED: similar to carbonic anhydrase VIII [...    97   2e-20

>ref|NP_001138644.1| carbonic anhydrase 3 [Canis lupus familiaris].
          Length = 260

 Score =  300 bits (768), Expect = 1e-81
 Identities = 134/148 (90%), Positives = 140/148 (94%)
 Frame = +2

Query: 50  MAKEWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTIL 229
           MAKEWGYA HNGPDHWHELYPIAKGDNQSPIELHTKDI+HDPSLLPW+ASYDPGS KTIL
Sbjct: 1   MAKEWGYASHNGPDHWHELYPIAKGDNQSPIELHTKDIRHDPSLLPWSASYDPGSCKTIL 60

Query: 230 NNGKTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL 409
           NNGKTCRVVFDDTYDRSMLRGGPLT  YRLRQFHLHWG+SDDHGSEHTVDGVKYAAELHL
Sbjct: 61  NNGKTCRVVFDDTYDRSMLRGGPLTGPYRLRQFHLHWGASDDHGSEHTVDGVKYAAELHL 120

Query: 410 VHWNSKYNSFATALKHPDGVAVVGIFLK 493
           VHWN KYN++  ALK PDG+AVVGIFLK
Sbjct: 121 VHWNPKYNTYGEALKQPDGIAVVGIFLK 148



 Score =  100 bits (248), Expect = 2e-21
 Identities = 51/70 (72%), Positives = 56/70 (80%)
 Frame = +2

Query: 428 YNSFATALKHPDGVAVVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPLVRNWRPPQPI 607
           + SF T    P    +V I LKEP+ VSSDQMAKLRSL+SSAENEPPVPLV NWRPPQPI
Sbjct: 194 HGSFTTP---PCEECIVWILLKEPMTVSSDQMAKLRSLFSSAENEPPVPLVGNWRPPQPI 250

Query: 608 KGRIVKASFK 637
           KGR+VKASFK
Sbjct: 251 KGRVVKASFK 260


>ref|NP_001138642.1| carbonic anhydrase 2 [Canis lupus familiaris].
          Length = 260

 Score =  202 bits (513), Expect = 4e-52
 Identities = 89/148 (60%), Positives = 111/148 (75%)
 Frame = +2

Query: 50  MAKEWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTIL 229
           MA  WGYA HNGP+HWH+ +PIAKG+ QSP+++ TK   HDP+L      YD   ++ I+
Sbjct: 1   MAHHWGYAKHNGPEHWHKDFPIAKGERQSPVDIDTKAAVHDPALKSLCPCYDQAVSQRII 60

Query: 230 NNGKTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL 409
           NNG +  V FDD+ D+++L+GGPLT  YRL QFH HWGSSD  GSEHTVD  KYAAELHL
Sbjct: 61  NNGHSFNVEFDDSQDKTVLKGGPLTGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHL 120

Query: 410 VHWNSKYNSFATALKHPDGVAVVGIFLK 493
           VHWN+KY  F  A++ PDG+AV+GIFLK
Sbjct: 121 VHWNTKYGEFGKAVQQPDGLAVLGIFLK 148



 Score = 58.9 bits (141), Expect = 5e-09
 Identities = 29/55 (52%), Positives = 36/55 (65%)
 Frame = +2

Query: 473 VVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPLVRNWRPPQPIKGRIVKASFK 637
           V  I LKEPI+VSS+QM K R L  + E EP   ++ NWRP QP+  R + ASFK
Sbjct: 206 VTWIVLKEPISVSSEQMLKFRKLNFNKEGEPEELMMDNWRPAQPLHSRQINASFK 260


>ref|XP_544159.1| PREDICTED: similar to Carbonic anhydrase XIII (Carbonate
           dehydratase XIII) (CA-XIII) [Canis familiaris].
          Length = 279

 Score =  201 bits (510), Expect = 8e-52
 Identities = 97/179 (54%), Positives = 125/179 (69%), Gaps = 1/179 (0%)
 Frame = +2

Query: 62  WGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNGK 241
           W     +GP HW++ +PIA GD QSPIE+ TK++K+D SL P +  YD  SAK I N+G 
Sbjct: 23  WTKNQKSGPIHWNKFFPIADGDQQSPIEIKTKEVKYDSSLRPLSIKYDANSAKIISNSGH 82

Query: 242 TCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWN 421
           +  V FDDT D+S+LRGGPLT +YRLRQFHLHWGS+DDHGSEH VDGV+YAAELH+VHWN
Sbjct: 83  SFSVDFDDTEDKSVLRGGPLTGSYRLRQFHLHWGSADDHGSEHVVDGVRYAAELHVVHWN 142

Query: 422 S-KYNSFATALKHPDGVAVVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPLVRNWRP 595
           S KY SF  A   PDG+AV+G+FL+  I   + Q+ K+  +  S + +       N+ P
Sbjct: 143 SDKYPSFVEAAHEPDGLAVLGVFLQ--IGEHNSQLQKITDILDSIKEKGKQTRFTNFDP 199


>ref|NP_001138643.1| carbonic anhydrase 1 [Canis lupus familiaris].
          Length = 261

 Score =  194 bits (492), Expect = 1e-49
 Identities = 85/148 (57%), Positives = 115/148 (77%), Gaps = 1/148 (0%)
 Frame = +2

Query: 53  AKEWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILN 232
           +  WGY D NGP+ W +LYPIA G+NQSPI++ T + KHD SL P + SY+P +AK I+N
Sbjct: 3   SSNWGYDDKNGPEQWGKLYPIANGNNQSPIDIKTSETKHDTSLKPISVSYNPATAKEIIN 62

Query: 233 NGKTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLV 412
            G +  V ++D  DRS+L+GGPL+A+YRL QFH HWGS++D+GSEHTVDGVKY+ ELH+V
Sbjct: 63  VGHSFHVNYEDHDDRSVLKGGPLSASYRLSQFHFHWGSTNDYGSEHTVDGVKYSGELHIV 122

Query: 413 HWN-SKYNSFATALKHPDGVAVVGIFLK 493
           HWN SKY+SFA A+   DG+A++ + +K
Sbjct: 123 HWNSSKYSSFAEAVSQADGLAIIAVLMK 150


>ref|XP_546892.2| PREDICTED: similar to Carbonic anhydrase VII (Carbonate dehydratase
           VII) (CA-VII) [Canis familiaris].
          Length = 278

 Score =  154 bits (389), Expect = 9e-38
 Identities = 75/159 (47%), Positives = 99/159 (62%), Gaps = 15/159 (9%)
 Frame = +2

Query: 62  WGYADHN--------------GPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTAS 199
           WGY  ++              GP  WH+LYPIA+GD QSPI + +    + PSL P   S
Sbjct: 7   WGYGQNDEIQASLSPSLSTPAGPSQWHKLYPIAQGDRQSPINIVSSQAVYSPSLKPLELS 66

Query: 200 YDPGSAKTILNNGKTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVD 379
           Y+   + +I NNG + +V F+D+ DR+ + GGPL   YRL+Q H HWG     GSEHTVD
Sbjct: 67  YEACISLSITNNGHSVQVDFNDSDDRTAVTGGPLDGPYRLKQLHFHWGKKHSVGSEHTVD 126

Query: 380 GVKYAAELHLVHWNS-KYNSFATALKHPDGVAVVGIFLK 493
           G  + +ELHLVHWN+ KY++F  A   PDG+AVVGIFL+
Sbjct: 127 GKSFPSELHLVHWNAKKYSTFGEAASAPDGLAVVGIFLE 165


>ref|XP_543579.2| PREDICTED: similar to carbonic anhydrase VB, mitochondrial
           precursor [Canis familiaris].
          Length = 317

 Score =  137 bits (344), Expect = 1e-32
 Identities = 65/134 (48%), Positives = 88/134 (65%), Gaps = 1/134 (0%)
 Frame = +2

Query: 95  WHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNGKTCRVVFDDTYD 274
           W  +  +  G+ QSPI +  +D   DP+L P T SYDP +   + NNG +  V F+D+ D
Sbjct: 52  WESVDLVPVGERQSPINIRWRDSVFDPALKPLTISYDPTTCLHVWNNGYSFLVEFEDSTD 111

Query: 275 RSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWNS-KYNSFATAL 451
           +S+++GGPL   YRL+QFH HWG+ D  GSEHTVD   Y AELHLVHWN+ K+ +F  A 
Sbjct: 112 KSVIKGGPLEDNYRLKQFHFHWGAIDAWGSEHTVDSKCYPAELHLVHWNAVKFENFEDAA 171

Query: 452 KHPDGVAVVGIFLK 493
               G+AV+G+FLK
Sbjct: 172 LEEHGLAVIGVFLK 185


>ref|XP_851479.1| PREDICTED: similar to carbonic anhydrase VA, mitochondrial
           precursor [Canis familiaris].
          Length = 295

 Score =  122 bits (307), Expect = 3e-28
 Identities = 62/134 (46%), Positives = 82/134 (61%), Gaps = 1/134 (0%)
 Frame = +2

Query: 95  WHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNGKTCRVVFDDTYD 274
           W  L  +  G  QSPI +  +D  +DP L     SY   S   + N G   +V FDD+ +
Sbjct: 38  WKGLASVPGGTRQSPINIRWRDSVYDPRLKSLQVSYAATSCLHVWNTGYFFQVEFDDSTE 97

Query: 275 RSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWNS-KYNSFATAL 451
            S + GGPL   YRL+QFH HWG+++  GSEHTVD   Y AELHLVHWNS KY ++  A+
Sbjct: 98  GSGISGGPLENHYRLKQFHFHWGAANAWGSEHTVDDRAYPAELHLVHWNSVKYQNYKEAI 157

Query: 452 KHPDGVAVVGIFLK 493
              +GVAV+G+FL+
Sbjct: 158 MGENGVAVIGVFLQ 171


>ref|XP_850541.1| PREDICTED: similar to carbonic anhydrase 15 [Canis familiaris].
          Length = 305

 Score =  117 bits (292), Expect = 2e-26
 Identities = 69/184 (37%), Positives = 94/184 (51%), Gaps = 12/184 (6%)
 Frame = +2

Query: 83  GPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTAS---YDPGSAKTILNNGKTCRV 253
           GP HW E+ P   G  QSPI +    ++ DP+L P+        P    T+ N+G T  +
Sbjct: 35  GPTHWKEMAPACGGPAQSPINIDLHLVQQDPALGPFIFQGYHSAPPGPWTLENDGHTVLL 94

Query: 254 VFD-DTYDRSMLRGGPLTA-AYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWNSK 427
             D D   R  +RG  L   AYR  Q H HWG     GSEH+VDG +Y  E+H+VH N++
Sbjct: 95  RMDTDPQSRLEIRGAGLPLPAYRALQLHFHWGGPGRAGSEHSVDGQRYPMEMHVVHMNTR 154

Query: 428 YNSFATALKHPDGVAVVGIFLKEPINVSSDQMAKLRSLYSSA-------ENEPPVPLVRN 586
           Y S   A  HPDG+AV+ + L         Q A+LR++ + A       E  PP+PL+  
Sbjct: 155 YQSIEEARSHPDGLAVLAVLLAGSRTTPGSQPAELRTIIADAVPIGRAQEGTPPLPLLPP 214

Query: 587 WRPP 598
            R P
Sbjct: 215 SRRP 218


>ref|NP_001002999.1| carbonic anhydrase 6 precursor [Canis lupus familiaris].
          Length = 320

 Score =  100 bits (250), Expect = 1e-21
 Identities = 55/138 (39%), Positives = 78/138 (56%), Gaps = 4/138 (2%)
 Frame = +2

Query: 92  HWHELYPIAKGDNQSPIELHTKDIKHDPSL--LPWTASYDPGSAKTILNNGKTCRVVFDD 265
           HW   YP   G  QSPI+L  + ++++PSL  L  T          ++NNG T ++    
Sbjct: 34  HWPREYPTCGGTRQSPIDLQRRKVQYNPSLKALKLTGYRIQVGEFPMINNGHTVQISLPP 93

Query: 266 TYDRSMLRGGPLTAAYRLRQFHLHWG--SSDDHGSEHTVDGVKYAAELHLVHWNSKYNSF 439
           T  R M   G     Y  +Q H HWG  SS+  GSEHT+DG+++ AE+H+VH+NSKY S+
Sbjct: 94  TM-RMMASDG---TEYIAQQMHFHWGGASSEISGSEHTIDGIRFVAEIHIVHYNSKYKSY 149

Query: 440 ATALKHPDGVAVVGIFLK 493
             A   PDG+AV+   +K
Sbjct: 150 DIAQHEPDGLAVLAALVK 167


>ref|XP_544094.2| PREDICTED: similar to carbonic anhydrase VIII [Canis familiaris].
          Length = 290

 Score = 96.7 bits (239), Expect = 2e-20
 Identities = 54/150 (36%), Positives = 84/150 (56%), Gaps = 5/150 (3%)
 Frame = +2

Query: 59  EWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTAS--YDPGSAKTILN 232
           EWGY +      W  ++P A G+ QSPI L++++ ++DPSLL    S  Y       + N
Sbjct: 28  EWGYEEGV---EWGLVFPDANGEYQSPINLNSREARYDPSLLDVRLSPNYVVCRDCEVTN 84

Query: 233 NGKTCRVVFDDTYDRSMLRGGPLTAA--YRLRQFHLHWGSSDDHGSEHTVDGVKYAAELH 406
           +G T +V+      +S+L GGPL     + L +   HWG  +  GSEHTV+   +  ELH
Sbjct: 85  DGHTIQVILKS---KSVLSGGPLPQGHEFELYEVRFHWGRENQRGSEHTVNFKAFPMELH 141

Query: 407 LVHWNSK-YNSFATALKHPDGVAVVGIFLK 493
           L+HWNS  + S   A+  P G+A++ +F++
Sbjct: 142 LIHWNSTLFGSIDEAVGKPHGIAIIALFVQ 171


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,412,353
Number of extensions: 969022
Number of successful extensions: 2833
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 2806
Number of HSP's successfully gapped: 27
Length of query: 263
Length of database: 18,874,504
Length adjustment: 101
Effective length of query: 162
Effective length of database: 15,507,568
Effective search space: 2512226016
Effective search space used: 2512226016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001860
         (789 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_005172.1| carbonic anhydrase 3 [Homo sapiens].                 305   3e-83
Alignment   gi|NP_940986.1| carbonic anhydrase 13 [Homo sapiens].                210   1e-54
Alignment   gi|NP_000058.1| carbonic anhydrase 2 [Homo sapiens].                 201   8e-52
Alignment   gi|NP_001158302.1| carbonic anhydrase 1 [Homo sapiens].              189   2e-48
Alignment   gi|NP_001122303.1| carbonic anhydrase 1 [Homo sapiens].              189   2e-48
Alignment   gi|NP_001122302.1| carbonic anhydrase 1 [Homo sapiens].              189   2e-48
Alignment   gi|NP_001122301.1| carbonic anhydrase 1 [Homo sapiens].              189   2e-48
Alignment   gi|NP_001729.1| carbonic anhydrase 1 [Homo sapiens].                 189   2e-48
Alignment   gi|NP_005173.1| carbonic anhydrase 7 isoform 1 [Homo sapiens].       171   5e-43
Alignment   gi|NP_009151.1| carbonic anhydrase 5B, mitochondrial precursor ...   138   6e-33

>ref|NP_005172.1| carbonic anhydrase 3 [Homo sapiens].
          Length = 260

 Score =  305 bits (781), Expect = 3e-83
 Identities = 157/260 (60%), Positives = 169/260 (65%), Gaps = 64/260 (24%)
 Frame = +2

Query: 50  MAKEWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTIL 229
           MAKEWGYA HNGPDHWHEL+P AKG+NQSP+ELHTKDI+HDPSL PW+ SYD GSAKTIL
Sbjct: 1   MAKEWGYASHNGPDHWHELFPNAKGENQSPVELHTKDIRHDPSLQPWSVSYDGGSAKTIL 60

Query: 230 NNGKTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL 409
           NNGKTCRVVFDDTYDRSMLRGGPL   YRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL
Sbjct: 61  NNGKTCRVVFDDTYDRSMLRGGPLPGPYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL 120

Query: 410 V-----------------------------HWNSKYNSFATALKH--------------- 457
           V                             H N ++  F  AL                 
Sbjct: 121 VHWNPKYNTFKEALKQRDGIAVIGIFLKIGHENGEFQIFLDALDKIKTKGKEAPFTKFDP 180

Query: 458 --------------------PDGVAVVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPL 577
                               P    +V + LKEP+ VSSDQMAKLRSL SSAENEPPVPL
Sbjct: 181 SCLFPACRDYWTYQGSFTTPPCEECIVWLLLKEPMTVSSDQMAKLRSLLSSAENEPPVPL 240

Query: 578 VRNWRPPQPIKGRIVKASFK 637
           V NWRPPQPI  R+V+ASFK
Sbjct: 241 VSNWRPPQPINNRVVRASFK 260


>ref|NP_940986.1| carbonic anhydrase 13 [Homo sapiens].
          Length = 262

 Score =  210 bits (535), Expect = 1e-54
 Identities = 99/168 (58%), Positives = 123/168 (73%), Gaps = 1/168 (0%)
 Frame = +2

Query: 62  WGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNGK 241
           WGY +HNGP HW E +PIA GD QSPIE+ TK++K+D SL P +  YDP SAK I N+G 
Sbjct: 6   WGYREHNGPIHWKEFFPIADGDQQSPIEIKTKEVKYDSSLRPLSIKYDPSSAKIISNSGH 65

Query: 242 TCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWN 421
           +  V FDDT ++S+LRGGPLT +YRLRQ HLHWGS+DDHGSEH VDGV YAAELH+VHWN
Sbjct: 66  SFNVDFDDTENKSVLRGGPLTGSYRLRQVHLHWGSADDHGSEHIVDGVSYAAELHVVHWN 125

Query: 422 S-KYNSFATALKHPDGVAVVGIFLKEPINVSSDQMAKLRSLYSSAENE 562
           S KY SF  A   PDG+AV+G+FL+  I   + Q+ K+     S + +
Sbjct: 126 SDKYPSFVEAAHEPDGLAVLGVFLQ--IGEPNSQLQKITDTLDSIKEK 171


>ref|NP_000058.1| carbonic anhydrase 2 [Homo sapiens].
          Length = 260

 Score =  201 bits (510), Expect = 8e-52
 Identities = 88/148 (59%), Positives = 110/148 (74%)
 Frame = +2

Query: 50  MAKEWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTIL 229
           M+  WGY  HNGP+HWH+ +PIAKG+ QSP+++ T   K+DPSL P + SYD  ++  IL
Sbjct: 1   MSHHWGYGKHNGPEHWHKDFPIAKGERQSPVDIDTHTAKYDPSLKPLSVSYDQATSLRIL 60

Query: 230 NNGKTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL 409
           NNG    V FDD+ D+++L+GGPL   YRL QFH HWGS D  GSEHTVD  KYAAELHL
Sbjct: 61  NNGHAFNVEFDDSQDKAVLKGGPLDGTYRLIQFHFHWGSLDGQGSEHTVDKKKYAAELHL 120

Query: 410 VHWNSKYNSFATALKHPDGVAVVGIFLK 493
           VHWN+KY  F  A++ PDG+AV+GIFLK
Sbjct: 121 VHWNTKYGDFGKAVQQPDGLAVLGIFLK 148



 Score = 63.2 bits (152), Expect = 3e-10
 Identities = 31/55 (56%), Positives = 38/55 (69%)
 Frame = +2

Query: 473 VVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPLVRNWRPPQPIKGRIVKASFK 637
           V  I LKEPI+VSS+Q+ K R L  + E EP   +V NWRP QP+K R +KASFK
Sbjct: 206 VTWIVLKEPISVSSEQVLKFRKLNFNGEGEPEELMVDNWRPAQPLKNRQIKASFK 260


>ref|NP_001158302.1| carbonic anhydrase 1 [Homo sapiens].
          Length = 261

 Score =  189 bits (480), Expect = 2e-48
 Identities = 83/146 (56%), Positives = 112/146 (76%), Gaps = 1/146 (0%)
 Frame = +2

Query: 59  EWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNG 238
           +WGY D NGP+ W +LYPIA G+NQSP+++ T + KHD SL P + SY+P +AK I+N G
Sbjct: 5   DWGYDDKNGPEQWSKLYPIANGNNQSPVDIKTSETKHDTSLKPISVSYNPATAKEIINVG 64

Query: 239 KTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHW 418
            +  V F+D  +RS+L+GGP + +YRL QFH HWGS+++HGSEHTVDGVKY+AELH+ HW
Sbjct: 65  HSFHVNFEDNDNRSVLKGGPFSDSYRLFQFHFHWGSTNEHGSEHTVDGVKYSAELHVAHW 124

Query: 419 NS-KYNSFATALKHPDGVAVVGIFLK 493
           NS KY+S A A    DG+AV+G+ +K
Sbjct: 125 NSAKYSSLAEAASKADGLAVIGVLMK 150



 Score = 59.3 bits (142), Expect = 4e-09
 Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
 Frame = +2

Query: 434 SFATALKHPDGV-AVVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPLVRNWRPPQPIK 610
           ++  +L HP    +V  I  KE I+VSS+Q+A+ RSL S+ E +  VP+  N RP QP+K
Sbjct: 194 TYPGSLTHPPLYESVTWIICKESISVSSEQLAQFRSLLSNVEGDNAVPMQHNNRPTQPLK 253

Query: 611 GRIVKASF 634
           GR V+ASF
Sbjct: 254 GRTVRASF 261


>ref|NP_001122303.1| carbonic anhydrase 1 [Homo sapiens].
          Length = 261

 Score =  189 bits (480), Expect = 2e-48
 Identities = 83/146 (56%), Positives = 112/146 (76%), Gaps = 1/146 (0%)
 Frame = +2

Query: 59  EWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNG 238
           +WGY D NGP+ W +LYPIA G+NQSP+++ T + KHD SL P + SY+P +AK I+N G
Sbjct: 5   DWGYDDKNGPEQWSKLYPIANGNNQSPVDIKTSETKHDTSLKPISVSYNPATAKEIINVG 64

Query: 239 KTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHW 418
            +  V F+D  +RS+L+GGP + +YRL QFH HWGS+++HGSEHTVDGVKY+AELH+ HW
Sbjct: 65  HSFHVNFEDNDNRSVLKGGPFSDSYRLFQFHFHWGSTNEHGSEHTVDGVKYSAELHVAHW 124

Query: 419 NS-KYNSFATALKHPDGVAVVGIFLK 493
           NS KY+S A A    DG+AV+G+ +K
Sbjct: 125 NSAKYSSLAEAASKADGLAVIGVLMK 150



 Score = 59.3 bits (142), Expect = 4e-09
 Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
 Frame = +2

Query: 434 SFATALKHPDGV-AVVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPLVRNWRPPQPIK 610
           ++  +L HP    +V  I  KE I+VSS+Q+A+ RSL S+ E +  VP+  N RP QP+K
Sbjct: 194 TYPGSLTHPPLYESVTWIICKESISVSSEQLAQFRSLLSNVEGDNAVPMQHNNRPTQPLK 253

Query: 611 GRIVKASF 634
           GR V+ASF
Sbjct: 254 GRTVRASF 261


>ref|NP_001122302.1| carbonic anhydrase 1 [Homo sapiens].
          Length = 261

 Score =  189 bits (480), Expect = 2e-48
 Identities = 83/146 (56%), Positives = 112/146 (76%), Gaps = 1/146 (0%)
 Frame = +2

Query: 59  EWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNG 238
           +WGY D NGP+ W +LYPIA G+NQSP+++ T + KHD SL P + SY+P +AK I+N G
Sbjct: 5   DWGYDDKNGPEQWSKLYPIANGNNQSPVDIKTSETKHDTSLKPISVSYNPATAKEIINVG 64

Query: 239 KTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHW 418
            +  V F+D  +RS+L+GGP + +YRL QFH HWGS+++HGSEHTVDGVKY+AELH+ HW
Sbjct: 65  HSFHVNFEDNDNRSVLKGGPFSDSYRLFQFHFHWGSTNEHGSEHTVDGVKYSAELHVAHW 124

Query: 419 NS-KYNSFATALKHPDGVAVVGIFLK 493
           NS KY+S A A    DG+AV+G+ +K
Sbjct: 125 NSAKYSSLAEAASKADGLAVIGVLMK 150



 Score = 59.3 bits (142), Expect = 4e-09
 Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
 Frame = +2

Query: 434 SFATALKHPDGV-AVVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPLVRNWRPPQPIK 610
           ++  +L HP    +V  I  KE I+VSS+Q+A+ RSL S+ E +  VP+  N RP QP+K
Sbjct: 194 TYPGSLTHPPLYESVTWIICKESISVSSEQLAQFRSLLSNVEGDNAVPMQHNNRPTQPLK 253

Query: 611 GRIVKASF 634
           GR V+ASF
Sbjct: 254 GRTVRASF 261


>ref|NP_001122301.1| carbonic anhydrase 1 [Homo sapiens].
          Length = 261

 Score =  189 bits (480), Expect = 2e-48
 Identities = 83/146 (56%), Positives = 112/146 (76%), Gaps = 1/146 (0%)
 Frame = +2

Query: 59  EWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNG 238
           +WGY D NGP+ W +LYPIA G+NQSP+++ T + KHD SL P + SY+P +AK I+N G
Sbjct: 5   DWGYDDKNGPEQWSKLYPIANGNNQSPVDIKTSETKHDTSLKPISVSYNPATAKEIINVG 64

Query: 239 KTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHW 418
            +  V F+D  +RS+L+GGP + +YRL QFH HWGS+++HGSEHTVDGVKY+AELH+ HW
Sbjct: 65  HSFHVNFEDNDNRSVLKGGPFSDSYRLFQFHFHWGSTNEHGSEHTVDGVKYSAELHVAHW 124

Query: 419 NS-KYNSFATALKHPDGVAVVGIFLK 493
           NS KY+S A A    DG+AV+G+ +K
Sbjct: 125 NSAKYSSLAEAASKADGLAVIGVLMK 150



 Score = 59.3 bits (142), Expect = 4e-09
 Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
 Frame = +2

Query: 434 SFATALKHPDGV-AVVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPLVRNWRPPQPIK 610
           ++  +L HP    +V  I  KE I+VSS+Q+A+ RSL S+ E +  VP+  N RP QP+K
Sbjct: 194 TYPGSLTHPPLYESVTWIICKESISVSSEQLAQFRSLLSNVEGDNAVPMQHNNRPTQPLK 253

Query: 611 GRIVKASF 634
           GR V+ASF
Sbjct: 254 GRTVRASF 261


>ref|NP_001729.1| carbonic anhydrase 1 [Homo sapiens].
          Length = 261

 Score =  189 bits (480), Expect = 2e-48
 Identities = 83/146 (56%), Positives = 112/146 (76%), Gaps = 1/146 (0%)
 Frame = +2

Query: 59  EWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNG 238
           +WGY D NGP+ W +LYPIA G+NQSP+++ T + KHD SL P + SY+P +AK I+N G
Sbjct: 5   DWGYDDKNGPEQWSKLYPIANGNNQSPVDIKTSETKHDTSLKPISVSYNPATAKEIINVG 64

Query: 239 KTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHW 418
            +  V F+D  +RS+L+GGP + +YRL QFH HWGS+++HGSEHTVDGVKY+AELH+ HW
Sbjct: 65  HSFHVNFEDNDNRSVLKGGPFSDSYRLFQFHFHWGSTNEHGSEHTVDGVKYSAELHVAHW 124

Query: 419 NS-KYNSFATALKHPDGVAVVGIFLK 493
           NS KY+S A A    DG+AV+G+ +K
Sbjct: 125 NSAKYSSLAEAASKADGLAVIGVLMK 150



 Score = 59.3 bits (142), Expect = 4e-09
 Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
 Frame = +2

Query: 434 SFATALKHPDGV-AVVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPLVRNWRPPQPIK 610
           ++  +L HP    +V  I  KE I+VSS+Q+A+ RSL S+ E +  VP+  N RP QP+K
Sbjct: 194 TYPGSLTHPPLYESVTWIICKESISVSSEQLAQFRSLLSNVEGDNAVPMQHNNRPTQPLK 253

Query: 611 GRIVKASF 634
           GR V+ASF
Sbjct: 254 GRTVRASF 261


>ref|NP_005173.1| carbonic anhydrase 7 isoform 1 [Homo sapiens].
          Length = 264

 Score =  171 bits (434), Expect = 5e-43
 Identities = 77/145 (53%), Positives = 102/145 (70%), Gaps = 1/145 (0%)
 Frame = +2

Query: 62  WGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNGK 241
           WGY   +GP HWH+LYPIA+GD QSPI + +    + PSL P   SY+   + +I NNG 
Sbjct: 7   WGYGQDDGPSHWHKLYPIAQGDRQSPINIISSQAVYSPSLQPLELSYEACMSLSITNNGH 66

Query: 242 TCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWN 421
           + +V F+D+ DR+++ GGPL   YRL+QFH HWG   D GSEHTVDG  + +ELHLVHWN
Sbjct: 67  SVQVDFNDSDDRTVVTGGPLEGPYRLKQFHFHWGKKHDVGSEHTVDGKSFPSELHLVHWN 126

Query: 422 S-KYNSFATALKHPDGVAVVGIFLK 493
           + KY++F  A   PDG+AVVG+FL+
Sbjct: 127 AKKYSTFGEAASAPDGLAVVGVFLE 151


>ref|NP_009151.1| carbonic anhydrase 5B, mitochondrial precursor [Homo sapiens].
          Length = 317

 Score =  138 bits (347), Expect = 6e-33
 Identities = 64/134 (47%), Positives = 89/134 (66%), Gaps = 1/134 (0%)
 Frame = +2

Query: 95  WHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNGKTCRVVFDDTYD 274
           W  +  +  GD QSPI +  +D  +DP L P T SYDP +   + NNG +  V F+D+ D
Sbjct: 52  WESVDLVPGGDRQSPINIRWRDSVYDPGLKPLTISYDPATCLHVWNNGYSFLVEFEDSTD 111

Query: 275 RSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWNS-KYNSFATAL 451
           +S+++GGPL   YRL+QFH HWG+ D  GSEHTVD   + AELHLVHWN+ ++ +F  A 
Sbjct: 112 KSVIKGGPLEHNYRLKQFHFHWGAIDAWGSEHTVDSKCFPAELHLVHWNAVRFENFEDAA 171

Query: 452 KHPDGVAVVGIFLK 493
              +G+AV+G+FLK
Sbjct: 172 LEENGLAVIGVFLK 185


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,820,861
Number of extensions: 952381
Number of successful extensions: 3011
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 2977
Number of HSP's successfully gapped: 37
Length of query: 263
Length of database: 18,297,164
Length adjustment: 101
Effective length of query: 162
Effective length of database: 14,967,800
Effective search space: 2424783600
Effective search space used: 2424783600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001860
         (789 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_031632.2| carbonic anhydrase 3 [Mus musculus].                 301   4e-82
Alignment   gi|NP_078771.1| carbonic anhydrase 13 [Mus musculus].                216   2e-56
Alignment   gi|NP_033931.4| carbonic anhydrase 2 [Mus musculus].                 201   5e-52
Alignment   gi|NP_001077426.1| carbonic anhydrase 1 [Mus musculus].              191   5e-49
Alignment   gi|NP_033929.2| carbonic anhydrase 1 [Mus musculus].                 191   5e-49
Alignment   gi|NP_444300.1| carbonic anhydrase 7 [Mus musculus].                 164   9e-41
Alignment   gi|NP_851832.2| carbonic anhydrase 5B, mitochondrial precursor ...   144   8e-35
Alignment   gi|NP_031634.2| carbonic anhydrase 5A, mitochondrial precursor ...   133   1e-31
Alignment   gi|NP_848483.3| carbonic anhydrase 12 precursor [Mus musculus].       97   1e-20
Alignment   gi|NP_031618.2| carbonic anhydrase-related protein [Mus musculu...    97   2e-20

>ref|NP_031632.2| carbonic anhydrase 3 [Mus musculus].
          Length = 260

 Score =  301 bits (771), Expect = 4e-82
 Identities = 136/148 (91%), Positives = 140/148 (94%)
 Frame = +2

Query: 50  MAKEWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTIL 229
           MAKEWGYA HNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSL PW+ASYDPGSAKTIL
Sbjct: 1   MAKEWGYASHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLQPWSASYDPGSAKTIL 60

Query: 230 NNGKTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL 409
           NNGKTCRVVFDDTYDRSMLRGGPL+  YRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL
Sbjct: 61  NNGKTCRVVFDDTYDRSMLRGGPLSGPYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL 120

Query: 410 VHWNSKYNSFATALKHPDGVAVVGIFLK 493
           VHWN KYN+F  ALK PDG+AVVGIFLK
Sbjct: 121 VHWNPKYNTFGEALKQPDGIAVVGIFLK 148



 Score = 97.8 bits (242), Expect = 8e-21
 Identities = 48/70 (68%), Positives = 56/70 (80%)
 Frame = +2

Query: 428 YNSFATALKHPDGVAVVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPLVRNWRPPQPI 607
           + SF T    P    +V + LKEP+ VSSDQMAKLRSL+SSAENEPPVPLV NWRPPQP+
Sbjct: 194 HGSFTTP---PCEECIVWLLLKEPMTVSSDQMAKLRSLFSSAENEPPVPLVGNWRPPQPV 250

Query: 608 KGRIVKASFK 637
           KGR+V+ASFK
Sbjct: 251 KGRVVRASFK 260


>ref|NP_078771.1| carbonic anhydrase 13 [Mus musculus].
          Length = 262

 Score =  216 bits (550), Expect = 2e-56
 Identities = 103/179 (57%), Positives = 129/179 (72%), Gaps = 1/179 (0%)
 Frame = +2

Query: 62  WGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNGK 241
           WGY +HNGP HW+EL+PIA GD QSPIE+ TK++K+D SL P +  YDP SAK I N+G 
Sbjct: 6   WGYGEHNGPIHWNELFPIADGDQQSPIEIKTKEVKYDSSLRPLSIKYDPASAKIISNSGH 65

Query: 242 TCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWN 421
           +  V FDDT D+S+LRGGPLT  YRLRQFHLHWGS+DDHGSEH VDGV+YAAELH+VHWN
Sbjct: 66  SFNVDFDDTEDKSVLRGGPLTGNYRLRQFHLHWGSADDHGSEHVVDGVRYAAELHVVHWN 125

Query: 422 S-KYNSFATALKHPDGVAVVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPLVRNWRP 595
           S KY SF  A    DG+AV+G+FL+  I   + Q+ K+  +  S + +       N+ P
Sbjct: 126 SDKYPSFVEAAHESDGLAVLGVFLQ--IGEHNPQLQKITDILDSIKEKGKQTRFTNFDP 182



 Score = 61.2 bits (147), Expect = 8e-10
 Identities = 30/55 (54%), Positives = 40/55 (72%)
 Frame = +2

Query: 470 AVVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPLVRNWRPPQPIKGRIVKASF 634
           +V  I LK+PI++SS Q+A+ RSL  +AE E    L+ N RPPQP+KGR V+ASF
Sbjct: 207 SVTWIVLKQPISISSQQLARFRSLLCTAEGESAAFLLSNHRPPQPLKGRRVRASF 261


>ref|NP_033931.4| carbonic anhydrase 2 [Mus musculus].
          Length = 260

 Score =  201 bits (511), Expect = 5e-52
 Identities = 96/205 (46%), Positives = 133/205 (64%)
 Frame = +2

Query: 50  MAKEWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTIL 229
           M+  WGY+ HNGP++WH+ +PIA GD QSP+++ T   +HDP+L P   SYD  ++K+I+
Sbjct: 1   MSHHWGYSKHNGPENWHKDFPIANGDRQSPVDIDTATAQHDPALQPLLISYDKAASKSIV 60

Query: 230 NNGKTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL 409
           NNG +  V FDD+ D ++L+GGPL+ +YRL QFH HWGSSD  GSEHTV+  KYAAELHL
Sbjct: 61  NNGHSFNVEFDDSQDNAVLKGGPLSDSYRLIQFHFHWGSSDGQGSEHTVNKKKYAAELHL 120

Query: 410 VHWNSKYNSFATALKHPDGVAVVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPLVRNW 589
           VHWN+KY  F  A++ PDG+AV+GIFLK  I  +S  + K+     S + +       N+
Sbjct: 121 VHWNTKYGDFGKAVQQPDGLAVLGIFLK--IGPASQGLQKVLEALHSIKTKGKRAAFANF 178

Query: 590 RPPQPIKGRIVKASFK*GCWSLPSS 664
            P   + G +         W+ P S
Sbjct: 179 DPCSLLPGNL-------DYWTYPGS 196


>ref|NP_001077426.1| carbonic anhydrase 1 [Mus musculus].
          Length = 261

 Score =  191 bits (485), Expect = 5e-49
 Identities = 88/172 (51%), Positives = 123/172 (71%), Gaps = 3/172 (1%)
 Frame = +2

Query: 59  EWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNG 238
           +WGY   NGPD W +LYPIA G+NQSPI++ T +  HD SL P + SY+P +AK I+N G
Sbjct: 5   DWGYGSENGPDQWSKLYPIANGNNQSPIDIKTSEANHDSSLKPLSISYNPATAKEIVNVG 64

Query: 239 KTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHW 418
            +  V+FDD+ ++S+L+GGPL  +YRL QFH HWG+S+DHGSEHTVDG +Y+ ELHLVHW
Sbjct: 65  HSFHVIFDDSSNQSVLKGGPLADSYRLTQFHFHWGNSNDHGSEHTVDGTRYSGELHLVHW 124

Query: 419 NS-KYNSFATALKHPDGVAVVGIFLK-EPINVSSDQ-MAKLRSLYSSAENEP 565
           NS KY+S + A+   DG+A++G+ +K  P N S  + +  L S+ +  +  P
Sbjct: 125 NSAKYSSASEAISKADGLAILGVLMKVGPANPSLQKVLDALNSVKTKGKRAP 176


>ref|NP_033929.2| carbonic anhydrase 1 [Mus musculus].
          Length = 261

 Score =  191 bits (485), Expect = 5e-49
 Identities = 88/172 (51%), Positives = 123/172 (71%), Gaps = 3/172 (1%)
 Frame = +2

Query: 59  EWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNG 238
           +WGY   NGPD W +LYPIA G+NQSPI++ T +  HD SL P + SY+P +AK I+N G
Sbjct: 5   DWGYGSENGPDQWSKLYPIANGNNQSPIDIKTSEANHDSSLKPLSISYNPATAKEIVNVG 64

Query: 239 KTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHW 418
            +  V+FDD+ ++S+L+GGPL  +YRL QFH HWG+S+DHGSEHTVDG +Y+ ELHLVHW
Sbjct: 65  HSFHVIFDDSSNQSVLKGGPLADSYRLTQFHFHWGNSNDHGSEHTVDGTRYSGELHLVHW 124

Query: 419 NS-KYNSFATALKHPDGVAVVGIFLK-EPINVSSDQ-MAKLRSLYSSAENEP 565
           NS KY+S + A+   DG+A++G+ +K  P N S  + +  L S+ +  +  P
Sbjct: 125 NSAKYSSASEAISKADGLAILGVLMKVGPANPSLQKVLDALNSVKTKGKRAP 176


>ref|NP_444300.1| carbonic anhydrase 7 [Mus musculus].
          Length = 264

 Score =  164 bits (414), Expect = 9e-41
 Identities = 74/145 (51%), Positives = 100/145 (68%), Gaps = 1/145 (0%)
 Frame = +2

Query: 62  WGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNGK 241
           WGY   +GP +WH+LYPIA+GD QSPI + +    + PSL P    Y+   + +I NNG 
Sbjct: 7   WGYGQDDGPSNWHKLYPIAQGDRQSPINIISSQAVYSPSLQPLELFYEACMSLSITNNGH 66

Query: 242 TCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWN 421
           + +V F+D+ DR+++ GGPL   YRL+Q H HWG   D GSEHTVDG  + +ELHLVHWN
Sbjct: 67  SVQVDFNDSDDRTVVSGGPLEGPYRLKQLHFHWGKKRDMGSEHTVDGKSFPSELHLVHWN 126

Query: 422 S-KYNSFATALKHPDGVAVVGIFLK 493
           + KY++F  A   PDG+AVVG+FL+
Sbjct: 127 AKKYSTFGEAAAAPDGLAVVGVFLE 151


>ref|NP_851832.2| carbonic anhydrase 5B, mitochondrial precursor [Mus musculus].
          Length = 317

 Score =  144 bits (363), Expect = 8e-35
 Identities = 75/159 (47%), Positives = 96/159 (60%), Gaps = 3/159 (1%)
 Frame = +2

Query: 26  RPVPTKTTMAKEWGYADHNG--PDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTAS 199
           R VP ++       Y   N   P  W  L  +  GD QSPI +  +D  +DP L P T S
Sbjct: 27  RLVPRRSCSLYTCTYRTRNRALPPLWENLDLVPAGDRQSPINIRWRDSVYDPGLKPLTIS 86

Query: 200 YDPGSAKTILNNGKTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVD 379
           YDP +   I NNG +  V F+D+ D+S++ GGPL   YRL+QFH HWG+ D  GSEHTVD
Sbjct: 87  YDPATCLHIWNNGYSFLVEFEDSTDKSVVEGGPLEHNYRLKQFHFHWGAIDAWGSEHTVD 146

Query: 380 GVKYAAELHLVHWNS-KYNSFATALKHPDGVAVVGIFLK 493
              Y AELHLVHWN+ K+ SF  A    +G+AV+G+FLK
Sbjct: 147 SKCYPAELHLVHWNAVKFESFEDAALEENGLAVIGVFLK 185


>ref|NP_031634.2| carbonic anhydrase 5A, mitochondrial precursor [Mus musculus].
          Length = 299

 Score =  133 bits (335), Expect = 1e-31
 Identities = 65/127 (51%), Positives = 84/127 (66%), Gaps = 1/127 (0%)
 Frame = +2

Query: 116 AKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNGKTCRVVFDDTYDRSMLRGG 295
           A+G  QSPI +  KD  +DP L P   SYD  S + + N G   +V FDD+ + S + GG
Sbjct: 53  AEGTRQSPINIQWKDSVYDPQLAPLRVSYDAASCRYLWNTGYFFQVEFDDSCEDSGISGG 112

Query: 296 PLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWNS-KYNSFATALKHPDGVA 472
           PL   YRL+QFH HWG++D+ GSEH VDG  Y AELHLVHWNS KY ++  A    +G+A
Sbjct: 113 PLGNHYRLKQFHFHWGATDEWGSEHAVDGHTYPAELHLVHWNSTKYENYKKASVGENGLA 172

Query: 473 VVGIFLK 493
           V+G+FLK
Sbjct: 173 VIGVFLK 179


>ref|NP_848483.3| carbonic anhydrase 12 precursor [Mus musculus].
          Length = 354

 Score = 97.1 bits (240), Expect = 1e-20
 Identities = 58/161 (36%), Positives = 86/161 (53%), Gaps = 5/161 (3%)
 Frame = +2

Query: 26  RPVPTKTTMAKEWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYD 205
           +P  +      +W Y    G  +W + YP   G  QSPI+LH+  +++D SL P      
Sbjct: 20  QPSSSAPLNGSKWTYVGPAGEKNWSKKYPSCGGLLQSPIDLHSDILQYDASLAPLQFQGY 79

Query: 206 PGSAKTILN---NGKTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDD-HGSEHT 373
             S + +LN   +G + R+      +  M   G     YR  Q HLHWG+ +D HGSEHT
Sbjct: 80  NVSVEKLLNLTNDGHSVRL----NLNSDMYIQGLQPHHYRAEQLHLHWGNRNDPHGSEHT 135

Query: 374 VDGVKYAAELHLVHWNSK-YNSFATALKHPDGVAVVGIFLK 493
           V G  +AAELH+VH+NS  Y  F+TA    +G+AV+ + ++
Sbjct: 136 VSGKHFAAELHIVHYNSDLYPDFSTASDKSEGLAVLAVLIE 176


>ref|NP_031618.2| carbonic anhydrase-related protein [Mus musculus].
          Length = 291

 Score = 96.7 bits (239), Expect = 2e-20
 Identities = 54/150 (36%), Positives = 84/150 (56%), Gaps = 5/150 (3%)
 Frame = +2

Query: 59  EWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTAS--YDPGSAKTILN 232
           EWGY +      W  ++P A G+ QSPI L++++ ++DPSLL    S  Y       + N
Sbjct: 29  EWGYEEGV---EWGLVFPDANGEYQSPINLNSREARYDPSLLDVRLSPNYVVCRDCEVTN 85

Query: 233 NGKTCRVVFDDTYDRSMLRGGPLTAA--YRLRQFHLHWGSSDDHGSEHTVDGVKYAAELH 406
           +G T +V+      +S+L GGPL     + L +   HWG  +  GSEHTV+   +  ELH
Sbjct: 86  DGHTIQVILKS---KSVLSGGPLPQGQEFELYEVRFHWGRENQRGSEHTVNFKAFPMELH 142

Query: 407 LVHWNSK-YNSFATALKHPDGVAVVGIFLK 493
           L+HWNS  + S   A+  P G+A++ +F++
Sbjct: 143 LIHWNSTLFGSIDEAVGKPHGIAIIALFVQ 172


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,593,791
Number of extensions: 798518
Number of successful extensions: 2423
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 2400
Number of HSP's successfully gapped: 25
Length of query: 263
Length of database: 15,617,559
Length adjustment: 99
Effective length of query: 164
Effective length of database: 12,643,995
Effective search space: 2073615180
Effective search space used: 2073615180
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001860
         (789 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001008688.1| carbonic anhydrase 3 [Sus scrofa].                323   9e-89
Alignment   gi|XP_003355077.1| PREDICTED: carbonic anhydrase 3-like [Sus sc...   236   8e-63
Alignment   gi|XP_001924497.2| PREDICTED: carbonic anhydrase 13 [Sus scrofa].    220   8e-58
Alignment   gi|XP_001927840.1| PREDICTED: carbonic anhydrase 2 [Sus scrofa].     196   2e-50
Alignment   gi|XP_003355076.1| PREDICTED: carbonic anhydrase 3-like [Sus sc...   190   7e-49
Alignment   gi|XP_001924218.1| PREDICTED: carbonic anhydrase 1 [Sus scrofa].     184   4e-47
Alignment   gi|XP_001926850.1| PREDICTED: carbonic anhydrase 5B, mitochondr...   139   2e-33
Alignment   gi|NP_001137588.1| carbonic anhydrase 6 [Sus scrofa].                102   3e-22
Alignment   gi|XP_001926916.1| PREDICTED: carbonic anhydrase-related protei...    97   1e-20
Alignment   gi|XP_001924916.3| PREDICTED: carbonic anhydrase 14-like [Sus s...    91   9e-19

>ref|NP_001008688.1| carbonic anhydrase 3 [Sus scrofa].
          Length = 260

 Score =  323 bits (827), Expect = 9e-89
 Identities = 148/148 (100%), Positives = 148/148 (100%)
 Frame = +2

Query: 50  MAKEWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTIL 229
           MAKEWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTIL
Sbjct: 1   MAKEWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTIL 60

Query: 230 NNGKTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL 409
           NNGKTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL
Sbjct: 61  NNGKTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL 120

Query: 410 VHWNSKYNSFATALKHPDGVAVVGIFLK 493
           VHWNSKYNSFATALKHPDGVAVVGIFLK
Sbjct: 121 VHWNSKYNSFATALKHPDGVAVVGIFLK 148



 Score =  105 bits (261), Expect = 4e-23
 Identities = 54/70 (77%), Positives = 57/70 (81%)
 Frame = +2

Query: 428 YNSFATALKHPDGVAVVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPLVRNWRPPQPI 607
           + SF T    P    +V + LKEPI VSSDQMAKLRSLYSSAENEPPVPLVRNWRPPQPI
Sbjct: 194 HGSFTTP---PCEECIVWLLLKEPITVSSDQMAKLRSLYSSAENEPPVPLVRNWRPPQPI 250

Query: 608 KGRIVKASFK 637
           KGRIVKASFK
Sbjct: 251 KGRIVKASFK 260


>ref|XP_003355077.1| PREDICTED: carbonic anhydrase 3-like [Sus scrofa].
          Length = 260

 Score =  236 bits (603), Expect = 8e-63
 Identities = 105/148 (70%), Positives = 124/148 (83%)
 Frame = +2

Query: 50  MAKEWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTIL 229
           M+  WGY  HNGP+HWH+ +PIAKGD QSP++++T    HDP+L P +  Y+  +++ I+
Sbjct: 1   MSHHWGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRIV 60

Query: 230 NNGKTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL 409
           NNG +  V FD + D+ +LRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL
Sbjct: 61  NNGHSFNVEFDSSQDKGVLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL 120

Query: 410 VHWNSKYNSFATALKHPDGVAVVGIFLK 493
           VHWNSKYNSFATALKHPDGVAVVGIFLK
Sbjct: 121 VHWNSKYNSFATALKHPDGVAVVGIFLK 148



 Score =  105 bits (261), Expect = 4e-23
 Identities = 54/70 (77%), Positives = 57/70 (81%)
 Frame = +2

Query: 428 YNSFATALKHPDGVAVVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPLVRNWRPPQPI 607
           + SF T    P    +V + LKEPI VSSDQMAKLRSLYSSAENEPPVPLVRNWRPPQPI
Sbjct: 194 HGSFTTP---PCEECIVWLLLKEPITVSSDQMAKLRSLYSSAENEPPVPLVRNWRPPQPI 250

Query: 608 KGRIVKASFK 637
           KGRIVKASFK
Sbjct: 251 KGRIVKASFK 260


>ref|XP_001924497.2| PREDICTED: carbonic anhydrase 13 [Sus scrofa].
          Length = 243

 Score =  220 bits (560), Expect = 8e-58
 Identities = 104/179 (58%), Positives = 130/179 (72%), Gaps = 1/179 (0%)
 Frame = +2

Query: 62  WGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNGK 241
           WGY +HNGP HW+E +PIA GD QSPIE+ TK++K+D SL P +  YDP SAK I N+G 
Sbjct: 6   WGYGEHNGPVHWNEFFPIADGDQQSPIEIKTKEVKYDSSLRPLSIKYDPSSAKIISNSGH 65

Query: 242 TCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWN 421
           +  V FDDT D+S+LRGGPLT +YRLRQFHLHWGS+DDHGSEH VDGVKYAAELH+VHWN
Sbjct: 66  SFSVDFDDTEDKSVLRGGPLTGSYRLRQFHLHWGSADDHGSEHVVDGVKYAAELHVVHWN 125

Query: 422 S-KYNSFATALKHPDGVAVVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPLVRNWRP 595
           S KY SF  A   PDG+AV+G+FL+  I   + Q+ K+  +  S + +       N+ P
Sbjct: 126 SDKYPSFVEAAHEPDGLAVLGVFLQ--IGEHNSQLQKITDILDSIKEKGKQTRFTNFDP 182


>ref|XP_001927840.1| PREDICTED: carbonic anhydrase 2 [Sus scrofa].
          Length = 260

 Score =  196 bits (497), Expect = 2e-50
 Identities = 84/148 (56%), Positives = 108/148 (72%)
 Frame = +2

Query: 50  MAKEWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTIL 229
           M+  WGY  HNGP+HWH+ +PIAKGD QSP++++T    HDP+L P +  Y+  +++ I+
Sbjct: 1   MSHHWGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRIV 60

Query: 230 NNGKTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL 409
           NNG +  V FD + D+ +L GGPL   YRL QFH HWGSSD  GSEHTVD  KYAAELHL
Sbjct: 61  NNGHSFNVEFDSSQDKGVLEGGPLAGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHL 120

Query: 410 VHWNSKYNSFATALKHPDGVAVVGIFLK 493
           VHWN+KY  F  A + PDG+AV+G+FLK
Sbjct: 121 VHWNTKYKDFGEAAQQPDGLAVLGVFLK 148



 Score = 63.5 bits (153), Expect = 1e-10
 Identities = 30/56 (53%), Positives = 40/56 (71%)
 Frame = +2

Query: 470 AVVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPLVRNWRPPQPIKGRIVKASFK 637
           +V  I L+EPI+VSS QM K R+L  + E EP  P+V NWRP QP+K R ++ASF+
Sbjct: 205 SVTWIVLREPISVSSGQMMKFRTLNFNKEGEPEHPMVDNWRPTQPLKNRQIRASFQ 260


>ref|XP_003355076.1| PREDICTED: carbonic anhydrase 3-like [Sus scrofa].
          Length = 182

 Score =  190 bits (483), Expect = 7e-49
 Identities = 87/94 (92%), Positives = 87/94 (92%)
 Frame = +2

Query: 50  MAKEWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTIL 229
           MAKEWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTIL
Sbjct: 1   MAKEWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTIL 60

Query: 230 NNGKTCRVVFDDTYDRSMLRGGPLTAAYRLRQFH 331
           NNGKTCRVVFDDTYDRS LRGGPL AA  L   H
Sbjct: 61  NNGKTCRVVFDDTYDRSTLRGGPLHAAPSLASHH 94


>ref|XP_001924218.1| PREDICTED: carbonic anhydrase 1 [Sus scrofa].
          Length = 261

 Score =  184 bits (468), Expect = 4e-47
 Identities = 81/145 (55%), Positives = 109/145 (75%), Gaps = 1/145 (0%)
 Frame = +2

Query: 62  WGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNGK 241
           WGY    GP+HW ++YPIA G+NQSPI++ T + KHD SL P + SY+P +AK I+N G 
Sbjct: 6   WGYDGEYGPEHWSKVYPIANGNNQSPIDIKTSETKHDTSLKPISVSYNPATAKEIINVGH 65

Query: 242 TCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWN 421
           +  V F+D  +RS+L+ GPL+ +YRL QFH HWG +DD+GSEH VDG KY+AELH+VHWN
Sbjct: 66  SFHVNFEDNDNRSVLKDGPLSESYRLLQFHFHWGKTDDYGSEHLVDGAKYSAELHIVHWN 125

Query: 422 S-KYNSFATALKHPDGVAVVGIFLK 493
           S KY+S A A  H DG+A++G+ +K
Sbjct: 126 SAKYSSAAEAASHADGLAIIGVLVK 150


>ref|XP_001926850.1| PREDICTED: carbonic anhydrase 5B, mitochondrial-like [Sus scrofa].
          Length = 317

 Score =  139 bits (350), Expect = 2e-33
 Identities = 73/164 (44%), Positives = 97/164 (59%), Gaps = 3/164 (1%)
 Frame = +2

Query: 11  RESSSRPVPTKTTMAKEWGYADHNGPDH--WHELYPIAKGDNQSPIELHTKDIKHDPSLL 184
           R  S+RP    T       Y   N   H  W     +  G+ QSPI +  +D  +DP L 
Sbjct: 27  RSMSARPCSLYTCT-----YKTRNRDLHPLWESADLVPAGERQSPINIRWRDSVYDPGLK 81

Query: 185 PWTASYDPGSAKTILNNGKTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGS 364
           P T SYDP +   + NNG +  V F+D+ D+S++ GGPL   YRL+QFH HWG+ D  GS
Sbjct: 82  PLTISYDPTTCLHVWNNGYSFLVEFEDSTDKSVIEGGPLEHNYRLKQFHFHWGAIDAWGS 141

Query: 365 EHTVDGVKYAAELHLVHWNS-KYNSFATALKHPDGVAVVGIFLK 493
           EHTVD   Y AELHLVHWN+ K+ +F  A +  +G+AV+G+FLK
Sbjct: 142 EHTVDSKCYPAELHLVHWNAVKFENFEDAAQEENGLAVIGVFLK 185


>ref|NP_001137588.1| carbonic anhydrase 6 [Sus scrofa].
          Length = 317

 Score =  102 bits (253), Expect = 3e-22
 Identities = 56/151 (37%), Positives = 82/151 (54%), Gaps = 5/151 (3%)
 Frame = +2

Query: 41  KTTMAKEWGYADHNGPD-HWHELYPIAKGDNQSPIELHTKDIKHDPSL--LPWTASYDPG 211
           +T    EW Y+D    + HW   YP   G  QSPI++  K ++++P+L  L  T      
Sbjct: 16  QTQHGAEWTYSDGELDEAHWSREYPDCDGRRQSPIDVQRKSVQYNPALRALSLTGYEAQE 75

Query: 212 SAKTILNNGKTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGS--SDDHGSEHTVDGV 385
              +++NNG T ++    T    M    P    Y  +Q H HWG   S+  GSEHT+DG+
Sbjct: 76  GEFSMINNGHTVQISLPST----MRLTAPDGTQYIAKQMHFHWGGAFSEISGSEHTIDGI 131

Query: 386 KYAAELHLVHWNSKYNSFATALKHPDGVAVV 478
           +Y  E+H+VH+NSKY S+  A   PDG+AV+
Sbjct: 132 RYVTEVHVVHYNSKYKSYDEAQTAPDGLAVL 162


>ref|XP_001926916.1| PREDICTED: carbonic anhydrase-related protein-like [Sus scrofa].
          Length = 291

 Score = 96.7 bits (239), Expect = 1e-20
 Identities = 54/150 (36%), Positives = 84/150 (56%), Gaps = 5/150 (3%)
 Frame = +2

Query: 59  EWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTAS--YDPGSAKTILN 232
           EWGY +      W  ++P A G+ QSPI L++++ ++DPSLL    S  Y       + N
Sbjct: 29  EWGYEEGV---EWGLVFPDANGEYQSPINLNSREARYDPSLLDVRLSPNYVVCRDCEVTN 85

Query: 233 NGKTCRVVFDDTYDRSMLRGGPLTAA--YRLRQFHLHWGSSDDHGSEHTVDGVKYAAELH 406
           +G T +V+      +S+L GGPL     + L +   HWG  +  GSEHTV+   +  ELH
Sbjct: 86  DGHTIQVILKS---KSVLSGGPLPQGHEFELYEVRFHWGRENQRGSEHTVNFKAFPMELH 142

Query: 407 LVHWNSK-YNSFATALKHPDGVAVVGIFLK 493
           L+HWNS  + S   A+  P G+A++ +F++
Sbjct: 143 LIHWNSTLFGSIDEAVGKPHGIAIIALFVQ 172


>ref|XP_001924916.3| PREDICTED: carbonic anhydrase 14-like [Sus scrofa].
          Length = 340

 Score = 90.5 bits (223), Expect = 9e-19
 Identities = 57/151 (37%), Positives = 80/151 (52%), Gaps = 5/151 (3%)
 Frame = +2

Query: 56  KEWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTA-SYD-PGSAKTIL 229
           + W Y   +G DHW   YP    + QSPI + T  +  DP LLP     Y+ PG+    L
Sbjct: 20  QHWTYEGPHGQDHWPASYPECGSNAQSPINIQTDSVTFDPELLPLQPHGYEQPGTEPLDL 79

Query: 230 -NNGKTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWG-SSDDHGSEHTVDGVKYAAEL 403
            NNG T +     +   ++   G L   Y   Q HLHWG      GSEH ++G   AAEL
Sbjct: 80  HNNGHTGKNAXQLSLPPTLHLEG-LPRKYVAAQLHLHWGQKGSPGGSEHKINGEATAAEL 138

Query: 404 HLVHWNSK-YNSFATALKHPDGVAVVGIFLK 493
           H+VH++S+ Y S + A + P G+AV+GI ++
Sbjct: 139 HIVHYDSESYASLSEAAQQPQGLAVLGILVE 169


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,215,795
Number of extensions: 600177
Number of successful extensions: 1808
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 1791
Number of HSP's successfully gapped: 21
Length of query: 263
Length of database: 11,343,932
Length adjustment: 97
Effective length of query: 166
Effective length of database: 8,928,923
Effective search space: 1482201218
Effective search space used: 1482201218
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001860
         (789 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr04                                                         484   e-134

>Sscrofa_Chr04 
||          Length = 143465943

 Score =  484 bits (244), Expect = e-134
 Identities = 266/272 (97%), Gaps = 1/272 (0%)
 Strand = Plus / Minus

                                                                            
Query: 518      cagatggccaagctgcgaagcctctactccagtgcggagaacgagccccctgtcccccta 577
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56191374 cagatggccaagctgcgaagcctctactccagtgcggagaacgagccccctgtcccccta 56191315

                                                                            
Query: 578      gtgaggaactggcgccccccacagcctatcaagggcaggatagtgaaggcctccttcaaa 637
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56191314 gtgaggaactggcgccccccacagcctatcaagggcaggatagtgaaggcctccttcaaa 56191255

                                                                            
Query: 638      tgaggctgctggagcttgccctcttcaggaaagggaaacctgctactgcagagcttggtt 697
                |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 56191254 tgaggctgctggagcttgccctcttcaggaaa-ggaaacctgctactgcagagcttggtt 56191196

                                                                            
Query: 698      ccttgcctccttttggtgctccctattccaagtattatttcagttttccacactgaacca 757
                |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
Sbjct: 56191195 ccttgcctccttttggtgctccttattccaagtattatttcagttttccacactgagcaa 56191136

                                                
Query: 758      tggaggtgagagctgcaatcaccaggaaccaa 789
                || ||||||||||||||||||||| |||||||
Sbjct: 56191135 tgaaggtgagagctgcaatcaccaagaaccaa 56191104



 Score =  387 bits (195), Expect = e-105
 Identities = 198/199 (99%)
 Strand = Plus / Minus

                                                                            
Query: 83       ggtcctgaccactggcatgaactttacccaattgccaagggagacaaccaatcgcccatt 142
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56199954 ggtcctgaccactggcatgaactttacccaattgccaagggagacaaccaatcgcccatt 56199895

                                                                            
Query: 143      gaactgcacactaaggacatcaagcacgacccttctctgctgccctggacagcatcttat 202
                |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 56199894 gaactgcacactaaggacatcaagcatgacccttctctgctgccctggacagcatcttat 56199835

                                                                            
Query: 203      gaccctggctctgccaagaccatcctgaacaatgggaagacctgcagggttgtatttgat 262
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56199834 gaccctggctctgccaagaccatcctgaacaatgggaagacctgcagggttgtatttgat 56199775

                                   
Query: 263      gatacttatgacaggtcaa 281
                |||||||||||||||||||
Sbjct: 56199774 gatacttatgacaggtcaa 56199756



 Score =  236 bits (119), Expect = 1e-59
 Identities = 119/119 (100%)
 Strand = Plus / Minus

                                                                            
Query: 282      tgctgagaggtggtcctctcactgcagcctaccggcttcgccagtttcatcttcactggg 341
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56197352 tgctgagaggtggtcctctcactgcagcctaccggcttcgccagtttcatcttcactggg 56197293

                                                                           
Query: 342      gctcctcagatgatcacggatctgagcacactgtggatggagtcaagtatgctgcggag 400
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56197292 gctcctcagatgatcacggatctgagcacactgtggatggagtcaagtatgctgcggag 56197234



 Score =  190 bits (96), Expect = 8e-46
 Identities = 96/96 (100%)
 Strand = Plus / Minus

                                                                            
Query: 399      agctccatttggttcattggaattcaaagtataacagttttgcaactgctctgaagcacc 458
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56195512 agctccatttggttcattggaattcaaagtataacagttttgcaactgctctgaagcacc 56195453

                                                    
Query: 459      ctgatggagtggctgtagttggcatttttctgaagg 494
                ||||||||||||||||||||||||||||||||||||
Sbjct: 56195452 ctgatggagtggctgtagttggcatttttctgaagg 56195417



 Score =  168 bits (85), Expect = 3e-39
 Identities = 85/85 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1        acggcgtggaagagaaagcagcagccgtccagtgcccacgaagacgaccatggccaagga 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56200762 acggcgtggaagagaaagcagcagccgtccagtgcccacgaagacgaccatggccaagga 56200703

                                         
Query: 61       gtggggctacgccgaccacaatggt 85
                |||||||||||||||||||||||||
Sbjct: 56200702 gtggggctacgccgaccacaatggt 56200678



 Score = 58.0 bits (29), Expect = 8e-06
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                                 
Query: 488      ctgaaggagcccatcaacgtgagctctgaccag 520
                |||||||||||||||| ||||||||||||||||
Sbjct: 56192380 ctgaaggagcccatcaccgtgagctctgaccag 56192348


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,733,903
Number of extensions: 430
Number of successful extensions: 430
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 429
Number of HSP's successfully gapped: 6
Length of query: 789
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 768
Effective length of database: 2,808,413,156
Effective search space: 2156861303808
Effective search space used: 2156861303808
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)