Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001860
(789 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029609.1| carbonic anhydrase 3 [Bos taurus]. 298 4e-81
Alignment gi|XP_002692875.1| PREDICTED: carbonic anhydrase XIII [Bos taur... 208 4e-54
Alignment gi|XP_591606.4| PREDICTED: carbonic anhydrase XIII [Bos taurus]. 205 3e-53
Alignment gi|NP_848667.1| carbonic anhydrase 2 [Bos taurus]. 197 9e-51
Alignment gi|NP_001068934.1| carbonic anhydrase 1 [Bos taurus]. 190 1e-48
Alignment gi|XP_002692874.1| PREDICTED: carbonic anhydrase 1-like [Bos ta... 190 1e-48
Alignment gi|XP_001250684.1| PREDICTED: carbonic anhydrase 1-like [Bos ta... 190 1e-48
Alignment gi|NP_001179451.1| carbonic anhydrase 7 [Bos taurus]. 170 1e-42
Alignment gi|XP_002694851.1| PREDICTED: carbonic anhydrase VII-like [Bos ... 170 1e-42
Alignment gi|NP_001074377.2| carbonic anhydrase 5B, mitochondrial [Bos ta... 138 6e-33
>ref|NP_001029609.1| carbonic anhydrase 3 [Bos taurus].
Length = 260
Score = 298 bits (763), Expect = 4e-81
Identities = 134/148 (90%), Positives = 142/148 (95%)
Frame = +2
Query: 50 MAKEWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTIL 229
MAKEWGYADHNGPDHWHEL+P AKG+NQSPIEL+TK+I HDPSL PWTASYDPGSAKTIL
Sbjct: 1 MAKEWGYADHNGPDHWHELFPNAKGENQSPIELNTKEISHDPSLKPWTASYDPGSAKTIL 60
Query: 230 NNGKTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL 409
NNGKTCRVVFDDTYDRSMLRGGPL A YRLRQFHLHWGSSDDHGSEH+VDGVKYAAELHL
Sbjct: 61 NNGKTCRVVFDDTYDRSMLRGGPLAAPYRLRQFHLHWGSSDDHGSEHSVDGVKYAAELHL 120
Query: 410 VHWNSKYNSFATALKHPDGVAVVGIFLK 493
VHWNSKYNS+ATALKH DG+AVVG+FLK
Sbjct: 121 VHWNSKYNSYATALKHADGIAVVGVFLK 148
Score = 102 bits (254), Expect = 4e-22
Identities = 52/70 (74%), Positives = 57/70 (81%)
Frame = +2
Query: 428 YNSFATALKHPDGVAVVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPLVRNWRPPQPI 607
+ SF T P +V + LKEPI VSSDQ+AKLR+LYSSAENEPPVPLVRNWRPPQPI
Sbjct: 194 HGSFTTP---PCEECIVWLLLKEPITVSSDQIAKLRTLYSSAENEPPVPLVRNWRPPQPI 250
Query: 608 KGRIVKASFK 637
KGRIVKASFK
Sbjct: 251 KGRIVKASFK 260
>ref|XP_002692875.1| PREDICTED: carbonic anhydrase XIII [Bos taurus].
Length = 262
Score = 208 bits (530), Expect = 4e-54
Identities = 100/179 (55%), Positives = 127/179 (70%), Gaps = 1/179 (0%)
Frame = +2
Query: 62 WGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNGK 241
WGY + +GP HW+E +PIA GD QSPIE+ TK++++D SL P YD SAK I N+G
Sbjct: 6 WGYGERDGPVHWNEFFPIADGDQQSPIEIKTKEVRYDSSLRPLGIKYDASSAKIISNSGH 65
Query: 242 TCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWN 421
+ V FDDT D+S+LRGGPLT +YRLRQFHLHWGS+DDHGSEH VDGV+YAAELH+VHWN
Sbjct: 66 SFNVDFDDTDDKSVLRGGPLTGSYRLRQFHLHWGSTDDHGSEHVVDGVRYAAELHVVHWN 125
Query: 422 S-KYNSFATALKHPDGVAVVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPLVRNWRP 595
S KY SF A PDG+AV+GIFL+ I + Q+ K+ + S + + N+ P
Sbjct: 126 SDKYPSFVEAAHEPDGLAVLGIFLQ--IGEHNPQLQKITDILDSIKEKGKQTRFTNFDP 182
Score = 61.2 bits (147), Expect = 1e-09
Identities = 30/56 (53%), Positives = 39/56 (69%)
Frame = +2
Query: 470 AVVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPLVRNWRPPQPIKGRIVKASFK 637
+V I LK+PIN+SS Q+A R+L S E E L+ N RPPQP+KGR V+ASF+
Sbjct: 207 SVTWIILKQPINISSQQLAAFRTLLCSREGETAAFLLSNHRPPQPLKGRKVRASFR 262
>ref|XP_591606.4| PREDICTED: carbonic anhydrase XIII [Bos taurus].
Length = 155
Score = 205 bits (522), Expect = 3e-53
Identities = 94/145 (64%), Positives = 114/145 (78%), Gaps = 1/145 (0%)
Frame = +2
Query: 62 WGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNGK 241
WGY + +GP HW+E +PIA GD QSPIE+ TK++++D SL P YD SAK I N+G
Sbjct: 6 WGYGERDGPVHWNEFFPIADGDQQSPIEIKTKEVRYDSSLRPLGIKYDASSAKIISNSGH 65
Query: 242 TCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWN 421
+ V FDDT D+S+LRGGPLT +YRLRQFHLHWGS+DDHGSEH VDGV+YAAELH+VHWN
Sbjct: 66 SFNVDFDDTDDKSVLRGGPLTGSYRLRQFHLHWGSTDDHGSEHVVDGVRYAAELHVVHWN 125
Query: 422 S-KYNSFATALKHPDGVAVVGIFLK 493
S KY SF A PDG+AV+GIFL+
Sbjct: 126 SDKYPSFVEAAHEPDGLAVLGIFLQ 150
>ref|NP_848667.1| carbonic anhydrase 2 [Bos taurus].
Length = 260
Score = 197 bits (501), Expect = 9e-51
Identities = 84/148 (56%), Positives = 110/148 (74%)
Frame = +2
Query: 50 MAKEWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTIL 229
M+ WGY HNGP+HWH+ +PIA G+ QSP+++ TK + DP+L P Y +++ ++
Sbjct: 1 MSHHWGYGKHNGPEHWHKDFPIANGERQSPVDIDTKAVVQDPALKPLALVYGEATSRRMV 60
Query: 230 NNGKTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL 409
NNG + V +DD+ D+++L+ GPLT YRL QFH HWGSSDD GSEHTVD KYAAELHL
Sbjct: 61 NNGHSFNVEYDDSQDKAVLKDGPLTGTYRLVQFHFHWGSSDDQGSEHTVDRKKYAAELHL 120
Query: 410 VHWNSKYNSFATALKHPDGVAVVGIFLK 493
VHWN+KY F TA + PDG+AVVG+FLK
Sbjct: 121 VHWNTKYGDFGTAAQQPDGLAVVGVFLK 148
>ref|NP_001068934.1| carbonic anhydrase 1 [Bos taurus].
Length = 261
Score = 190 bits (483), Expect = 1e-48
Identities = 89/180 (49%), Positives = 125/180 (69%), Gaps = 1/180 (0%)
Frame = +2
Query: 59 EWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNG 238
+WGY NGP+HW +LYPIA G+NQSPI++ T + K DPSL P + SY+P +AK I+N G
Sbjct: 5 DWGYDGENGPEHWGKLYPIANGNNQSPIDIKTSETKRDPSLKPLSVSYNPATAKEIVNVG 64
Query: 239 KTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHW 418
+ V F+D+ +RS+L+GGPL+ +YRLRQFH HWG +DD GSEH VDG K++AELHLVHW
Sbjct: 65 HSFHVNFEDSDNRSVLKGGPLSESYRLRQFHFHWGITDDCGSEHLVDGAKFSAELHLVHW 124
Query: 419 NS-KYNSFATALKHPDGVAVVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPLVRNWRP 595
NS KY SFA A DG+A++G+ +K + ++ + K+ + +N+ N+ P
Sbjct: 125 NSAKYPSFADAASQADGLALIGVLVK--VGQANPNLQKVLDALKAVKNKNKKAPFTNFDP 182
>ref|XP_002692874.1| PREDICTED: carbonic anhydrase 1-like [Bos taurus].
Length = 261
Score = 190 bits (482), Expect = 1e-48
Identities = 89/180 (49%), Positives = 125/180 (69%), Gaps = 1/180 (0%)
Frame = +2
Query: 59 EWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNG 238
+WGY NGP+HW +LYPIA G+NQSPI++ T + K DPSL P + SY+P +AK I+N G
Sbjct: 5 DWGYDGENGPEHWGKLYPIANGNNQSPIDIKTSETKRDPSLKPLSVSYNPATAKEIVNVG 64
Query: 239 KTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHW 418
+ V F+D+ +RS+L+GGPL+ +YRLRQFH HWG +DD GSEH VDG K++AELHLVHW
Sbjct: 65 HSFHVNFEDSDNRSVLKGGPLSESYRLRQFHFHWGITDDCGSEHLVDGAKFSAELHLVHW 124
Query: 419 NS-KYNSFATALKHPDGVAVVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPLVRNWRP 595
NS KY SFA A DG+A++G+ +K + ++ + K+ + +N+ N+ P
Sbjct: 125 NSAKYPSFADAASKADGLALIGVLVK--VGQANPNLQKVLDALKAVKNKNKKAPFTNFDP 182
>ref|XP_001250684.1| PREDICTED: carbonic anhydrase 1-like [Bos taurus].
Length = 261
Score = 190 bits (482), Expect = 1e-48
Identities = 89/180 (49%), Positives = 125/180 (69%), Gaps = 1/180 (0%)
Frame = +2
Query: 59 EWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNG 238
+WGY NGP+HW +LYPIA G+NQSPI++ T + K DPSL P + SY+P +AK I+N G
Sbjct: 5 DWGYDGENGPEHWGKLYPIANGNNQSPIDIKTSETKRDPSLKPLSVSYNPATAKEIVNVG 64
Query: 239 KTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHW 418
+ V F+D+ +RS+L+GGPL+ +YRLRQFH HWG +DD GSEH VDG K++AELHLVHW
Sbjct: 65 HSFHVNFEDSDNRSVLKGGPLSESYRLRQFHFHWGITDDCGSEHLVDGAKFSAELHLVHW 124
Query: 419 NS-KYNSFATALKHPDGVAVVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPLVRNWRP 595
NS KY SFA A DG+A++G+ +K + ++ + K+ + +N+ N+ P
Sbjct: 125 NSAKYPSFADAASKADGLALIGVLVK--VGQANPNLQKVLDALKAVKNKNKKAPFTNFDP 182
>ref|NP_001179451.1| carbonic anhydrase 7 [Bos taurus].
Length = 264
Score = 170 bits (431), Expect = 1e-42
Identities = 76/145 (52%), Positives = 103/145 (71%), Gaps = 1/145 (0%)
Frame = +2
Query: 62 WGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNGK 241
WGY ++GP HWH+LYPIA+GD QSPI + + + PSL P SY+ ++ +I NNG
Sbjct: 7 WGYGQNDGPSHWHKLYPIAQGDRQSPINIVSSQAVYSPSLKPLEISYESCTSLSIANNGH 66
Query: 242 TCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWN 421
+ +V F+D+ DR+++ GGPL YRL+QFH HWG GSEHTVDG + +ELHLVHWN
Sbjct: 67 SVQVDFNDSDDRTVVSGGPLDGPYRLKQFHFHWGKKHGVGSEHTVDGKSFPSELHLVHWN 126
Query: 422 S-KYNSFATALKHPDGVAVVGIFLK 493
+ KY++F A PDG+AVVG+FL+
Sbjct: 127 AKKYSTFGEAASAPDGLAVVGVFLE 151
>ref|XP_002694851.1| PREDICTED: carbonic anhydrase VII-like [Bos taurus].
Length = 264
Score = 170 bits (431), Expect = 1e-42
Identities = 76/145 (52%), Positives = 103/145 (71%), Gaps = 1/145 (0%)
Frame = +2
Query: 62 WGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNGK 241
WGY ++GP HWH+LYPIA+GD QSPI + + + PSL P SY+ ++ +I NNG
Sbjct: 7 WGYGQNDGPSHWHKLYPIAQGDRQSPINIVSSQAVYSPSLKPLEISYESCTSLSIANNGH 66
Query: 242 TCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWN 421
+ +V F+D+ DR+++ GGPL YRL+QFH HWG GSEHTVDG + +ELHLVHWN
Sbjct: 67 SVQVDFNDSDDRTVVSGGPLDGPYRLKQFHFHWGKKHGVGSEHTVDGKSFPSELHLVHWN 126
Query: 422 S-KYNSFATALKHPDGVAVVGIFLK 493
+ KY++F A PDG+AVVG+FL+
Sbjct: 127 AKKYSTFGEAASAPDGLAVVGVFLE 151
>ref|NP_001074377.2| carbonic anhydrase 5B, mitochondrial [Bos taurus].
Length = 317
Score = 138 bits (347), Expect = 6e-33
Identities = 71/159 (44%), Positives = 94/159 (59%), Gaps = 3/159 (1%)
Frame = +2
Query: 26 RPVPTKTTMAKEWGYADHNGPDH--WHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTAS 199
R +P + Y N H W ++ G+ QSPI + KD +DP L P T S
Sbjct: 27 RSMPARPCSLYTCTYKSRNRVLHPLWEKVDLAPAGERQSPINIRWKDSVYDPGLQPLTIS 86
Query: 200 YDPGSAKTILNNGKTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVD 379
YDP + + NNG + V F+D+ D+S++ GGPL YRL+QFH HWG+ D GSEHTVD
Sbjct: 87 YDPTTCLHVWNNGYSFLVEFEDSADKSVIEGGPLEHNYRLKQFHFHWGAIDAWGSEHTVD 146
Query: 380 GVKYAAELHLVHWNS-KYNSFATALKHPDGVAVVGIFLK 493
Y AELHLVHWN+ K+ F A +G+AV+G+FLK
Sbjct: 147 SKCYPAELHLVHWNAVKFEHFEDAALEENGLAVIGVFLK 185
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 32,927,380
Number of extensions: 936053
Number of successful extensions: 2835
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 2801
Number of HSP's successfully gapped: 36
Length of query: 263
Length of database: 17,681,374
Length adjustment: 100
Effective length of query: 163
Effective length of database: 14,372,574
Effective search space: 2342729562
Effective search space used: 2342729562
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001860
(789 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001138644.1| carbonic anhydrase 3 [Canis lupus familiaris]. 300 1e-81
Alignment gi|NP_001138642.1| carbonic anhydrase 2 [Canis lupus familiaris]. 202 4e-52
Alignment gi|XP_544159.1| PREDICTED: similar to Carbonic anhydrase XIII (... 201 8e-52
Alignment gi|NP_001138643.1| carbonic anhydrase 1 [Canis lupus familiaris]. 194 1e-49
Alignment gi|XP_546892.2| PREDICTED: similar to Carbonic anhydrase VII (C... 154 9e-38
Alignment gi|XP_543579.2| PREDICTED: similar to carbonic anhydrase VB, mi... 137 1e-32
Alignment gi|XP_851479.1| PREDICTED: similar to carbonic anhydrase VA, mi... 122 3e-28
Alignment gi|XP_850541.1| PREDICTED: similar to carbonic anhydrase 15 [Ca... 117 2e-26
Alignment gi|NP_001002999.1| carbonic anhydrase 6 precursor [Canis lupus ... 100 1e-21
Alignment gi|XP_544094.2| PREDICTED: similar to carbonic anhydrase VIII [... 97 2e-20
>ref|NP_001138644.1| carbonic anhydrase 3 [Canis lupus familiaris].
Length = 260
Score = 300 bits (768), Expect = 1e-81
Identities = 134/148 (90%), Positives = 140/148 (94%)
Frame = +2
Query: 50 MAKEWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTIL 229
MAKEWGYA HNGPDHWHELYPIAKGDNQSPIELHTKDI+HDPSLLPW+ASYDPGS KTIL
Sbjct: 1 MAKEWGYASHNGPDHWHELYPIAKGDNQSPIELHTKDIRHDPSLLPWSASYDPGSCKTIL 60
Query: 230 NNGKTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL 409
NNGKTCRVVFDDTYDRSMLRGGPLT YRLRQFHLHWG+SDDHGSEHTVDGVKYAAELHL
Sbjct: 61 NNGKTCRVVFDDTYDRSMLRGGPLTGPYRLRQFHLHWGASDDHGSEHTVDGVKYAAELHL 120
Query: 410 VHWNSKYNSFATALKHPDGVAVVGIFLK 493
VHWN KYN++ ALK PDG+AVVGIFLK
Sbjct: 121 VHWNPKYNTYGEALKQPDGIAVVGIFLK 148
Score = 100 bits (248), Expect = 2e-21
Identities = 51/70 (72%), Positives = 56/70 (80%)
Frame = +2
Query: 428 YNSFATALKHPDGVAVVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPLVRNWRPPQPI 607
+ SF T P +V I LKEP+ VSSDQMAKLRSL+SSAENEPPVPLV NWRPPQPI
Sbjct: 194 HGSFTTP---PCEECIVWILLKEPMTVSSDQMAKLRSLFSSAENEPPVPLVGNWRPPQPI 250
Query: 608 KGRIVKASFK 637
KGR+VKASFK
Sbjct: 251 KGRVVKASFK 260
>ref|NP_001138642.1| carbonic anhydrase 2 [Canis lupus familiaris].
Length = 260
Score = 202 bits (513), Expect = 4e-52
Identities = 89/148 (60%), Positives = 111/148 (75%)
Frame = +2
Query: 50 MAKEWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTIL 229
MA WGYA HNGP+HWH+ +PIAKG+ QSP+++ TK HDP+L YD ++ I+
Sbjct: 1 MAHHWGYAKHNGPEHWHKDFPIAKGERQSPVDIDTKAAVHDPALKSLCPCYDQAVSQRII 60
Query: 230 NNGKTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL 409
NNG + V FDD+ D+++L+GGPLT YRL QFH HWGSSD GSEHTVD KYAAELHL
Sbjct: 61 NNGHSFNVEFDDSQDKTVLKGGPLTGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHL 120
Query: 410 VHWNSKYNSFATALKHPDGVAVVGIFLK 493
VHWN+KY F A++ PDG+AV+GIFLK
Sbjct: 121 VHWNTKYGEFGKAVQQPDGLAVLGIFLK 148
Score = 58.9 bits (141), Expect = 5e-09
Identities = 29/55 (52%), Positives = 36/55 (65%)
Frame = +2
Query: 473 VVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPLVRNWRPPQPIKGRIVKASFK 637
V I LKEPI+VSS+QM K R L + E EP ++ NWRP QP+ R + ASFK
Sbjct: 206 VTWIVLKEPISVSSEQMLKFRKLNFNKEGEPEELMMDNWRPAQPLHSRQINASFK 260
>ref|XP_544159.1| PREDICTED: similar to Carbonic anhydrase XIII (Carbonate
dehydratase XIII) (CA-XIII) [Canis familiaris].
Length = 279
Score = 201 bits (510), Expect = 8e-52
Identities = 97/179 (54%), Positives = 125/179 (69%), Gaps = 1/179 (0%)
Frame = +2
Query: 62 WGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNGK 241
W +GP HW++ +PIA GD QSPIE+ TK++K+D SL P + YD SAK I N+G
Sbjct: 23 WTKNQKSGPIHWNKFFPIADGDQQSPIEIKTKEVKYDSSLRPLSIKYDANSAKIISNSGH 82
Query: 242 TCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWN 421
+ V FDDT D+S+LRGGPLT +YRLRQFHLHWGS+DDHGSEH VDGV+YAAELH+VHWN
Sbjct: 83 SFSVDFDDTEDKSVLRGGPLTGSYRLRQFHLHWGSADDHGSEHVVDGVRYAAELHVVHWN 142
Query: 422 S-KYNSFATALKHPDGVAVVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPLVRNWRP 595
S KY SF A PDG+AV+G+FL+ I + Q+ K+ + S + + N+ P
Sbjct: 143 SDKYPSFVEAAHEPDGLAVLGVFLQ--IGEHNSQLQKITDILDSIKEKGKQTRFTNFDP 199
>ref|NP_001138643.1| carbonic anhydrase 1 [Canis lupus familiaris].
Length = 261
Score = 194 bits (492), Expect = 1e-49
Identities = 85/148 (57%), Positives = 115/148 (77%), Gaps = 1/148 (0%)
Frame = +2
Query: 53 AKEWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILN 232
+ WGY D NGP+ W +LYPIA G+NQSPI++ T + KHD SL P + SY+P +AK I+N
Sbjct: 3 SSNWGYDDKNGPEQWGKLYPIANGNNQSPIDIKTSETKHDTSLKPISVSYNPATAKEIIN 62
Query: 233 NGKTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLV 412
G + V ++D DRS+L+GGPL+A+YRL QFH HWGS++D+GSEHTVDGVKY+ ELH+V
Sbjct: 63 VGHSFHVNYEDHDDRSVLKGGPLSASYRLSQFHFHWGSTNDYGSEHTVDGVKYSGELHIV 122
Query: 413 HWN-SKYNSFATALKHPDGVAVVGIFLK 493
HWN SKY+SFA A+ DG+A++ + +K
Sbjct: 123 HWNSSKYSSFAEAVSQADGLAIIAVLMK 150
>ref|XP_546892.2| PREDICTED: similar to Carbonic anhydrase VII (Carbonate dehydratase
VII) (CA-VII) [Canis familiaris].
Length = 278
Score = 154 bits (389), Expect = 9e-38
Identities = 75/159 (47%), Positives = 99/159 (62%), Gaps = 15/159 (9%)
Frame = +2
Query: 62 WGYADHN--------------GPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTAS 199
WGY ++ GP WH+LYPIA+GD QSPI + + + PSL P S
Sbjct: 7 WGYGQNDEIQASLSPSLSTPAGPSQWHKLYPIAQGDRQSPINIVSSQAVYSPSLKPLELS 66
Query: 200 YDPGSAKTILNNGKTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVD 379
Y+ + +I NNG + +V F+D+ DR+ + GGPL YRL+Q H HWG GSEHTVD
Sbjct: 67 YEACISLSITNNGHSVQVDFNDSDDRTAVTGGPLDGPYRLKQLHFHWGKKHSVGSEHTVD 126
Query: 380 GVKYAAELHLVHWNS-KYNSFATALKHPDGVAVVGIFLK 493
G + +ELHLVHWN+ KY++F A PDG+AVVGIFL+
Sbjct: 127 GKSFPSELHLVHWNAKKYSTFGEAASAPDGLAVVGIFLE 165
>ref|XP_543579.2| PREDICTED: similar to carbonic anhydrase VB, mitochondrial
precursor [Canis familiaris].
Length = 317
Score = 137 bits (344), Expect = 1e-32
Identities = 65/134 (48%), Positives = 88/134 (65%), Gaps = 1/134 (0%)
Frame = +2
Query: 95 WHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNGKTCRVVFDDTYD 274
W + + G+ QSPI + +D DP+L P T SYDP + + NNG + V F+D+ D
Sbjct: 52 WESVDLVPVGERQSPINIRWRDSVFDPALKPLTISYDPTTCLHVWNNGYSFLVEFEDSTD 111
Query: 275 RSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWNS-KYNSFATAL 451
+S+++GGPL YRL+QFH HWG+ D GSEHTVD Y AELHLVHWN+ K+ +F A
Sbjct: 112 KSVIKGGPLEDNYRLKQFHFHWGAIDAWGSEHTVDSKCYPAELHLVHWNAVKFENFEDAA 171
Query: 452 KHPDGVAVVGIFLK 493
G+AV+G+FLK
Sbjct: 172 LEEHGLAVIGVFLK 185
>ref|XP_851479.1| PREDICTED: similar to carbonic anhydrase VA, mitochondrial
precursor [Canis familiaris].
Length = 295
Score = 122 bits (307), Expect = 3e-28
Identities = 62/134 (46%), Positives = 82/134 (61%), Gaps = 1/134 (0%)
Frame = +2
Query: 95 WHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNGKTCRVVFDDTYD 274
W L + G QSPI + +D +DP L SY S + N G +V FDD+ +
Sbjct: 38 WKGLASVPGGTRQSPINIRWRDSVYDPRLKSLQVSYAATSCLHVWNTGYFFQVEFDDSTE 97
Query: 275 RSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWNS-KYNSFATAL 451
S + GGPL YRL+QFH HWG+++ GSEHTVD Y AELHLVHWNS KY ++ A+
Sbjct: 98 GSGISGGPLENHYRLKQFHFHWGAANAWGSEHTVDDRAYPAELHLVHWNSVKYQNYKEAI 157
Query: 452 KHPDGVAVVGIFLK 493
+GVAV+G+FL+
Sbjct: 158 MGENGVAVIGVFLQ 171
>ref|XP_850541.1| PREDICTED: similar to carbonic anhydrase 15 [Canis familiaris].
Length = 305
Score = 117 bits (292), Expect = 2e-26
Identities = 69/184 (37%), Positives = 94/184 (51%), Gaps = 12/184 (6%)
Frame = +2
Query: 83 GPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTAS---YDPGSAKTILNNGKTCRV 253
GP HW E+ P G QSPI + ++ DP+L P+ P T+ N+G T +
Sbjct: 35 GPTHWKEMAPACGGPAQSPINIDLHLVQQDPALGPFIFQGYHSAPPGPWTLENDGHTVLL 94
Query: 254 VFD-DTYDRSMLRGGPLTA-AYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWNSK 427
D D R +RG L AYR Q H HWG GSEH+VDG +Y E+H+VH N++
Sbjct: 95 RMDTDPQSRLEIRGAGLPLPAYRALQLHFHWGGPGRAGSEHSVDGQRYPMEMHVVHMNTR 154
Query: 428 YNSFATALKHPDGVAVVGIFLKEPINVSSDQMAKLRSLYSSA-------ENEPPVPLVRN 586
Y S A HPDG+AV+ + L Q A+LR++ + A E PP+PL+
Sbjct: 155 YQSIEEARSHPDGLAVLAVLLAGSRTTPGSQPAELRTIIADAVPIGRAQEGTPPLPLLPP 214
Query: 587 WRPP 598
R P
Sbjct: 215 SRRP 218
>ref|NP_001002999.1| carbonic anhydrase 6 precursor [Canis lupus familiaris].
Length = 320
Score = 100 bits (250), Expect = 1e-21
Identities = 55/138 (39%), Positives = 78/138 (56%), Gaps = 4/138 (2%)
Frame = +2
Query: 92 HWHELYPIAKGDNQSPIELHTKDIKHDPSL--LPWTASYDPGSAKTILNNGKTCRVVFDD 265
HW YP G QSPI+L + ++++PSL L T ++NNG T ++
Sbjct: 34 HWPREYPTCGGTRQSPIDLQRRKVQYNPSLKALKLTGYRIQVGEFPMINNGHTVQISLPP 93
Query: 266 TYDRSMLRGGPLTAAYRLRQFHLHWG--SSDDHGSEHTVDGVKYAAELHLVHWNSKYNSF 439
T R M G Y +Q H HWG SS+ GSEHT+DG+++ AE+H+VH+NSKY S+
Sbjct: 94 TM-RMMASDG---TEYIAQQMHFHWGGASSEISGSEHTIDGIRFVAEIHIVHYNSKYKSY 149
Query: 440 ATALKHPDGVAVVGIFLK 493
A PDG+AV+ +K
Sbjct: 150 DIAQHEPDGLAVLAALVK 167
>ref|XP_544094.2| PREDICTED: similar to carbonic anhydrase VIII [Canis familiaris].
Length = 290
Score = 96.7 bits (239), Expect = 2e-20
Identities = 54/150 (36%), Positives = 84/150 (56%), Gaps = 5/150 (3%)
Frame = +2
Query: 59 EWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTAS--YDPGSAKTILN 232
EWGY + W ++P A G+ QSPI L++++ ++DPSLL S Y + N
Sbjct: 28 EWGYEEGV---EWGLVFPDANGEYQSPINLNSREARYDPSLLDVRLSPNYVVCRDCEVTN 84
Query: 233 NGKTCRVVFDDTYDRSMLRGGPLTAA--YRLRQFHLHWGSSDDHGSEHTVDGVKYAAELH 406
+G T +V+ +S+L GGPL + L + HWG + GSEHTV+ + ELH
Sbjct: 85 DGHTIQVILKS---KSVLSGGPLPQGHEFELYEVRFHWGRENQRGSEHTVNFKAFPMELH 141
Query: 407 LVHWNSK-YNSFATALKHPDGVAVVGIFLK 493
L+HWNS + S A+ P G+A++ +F++
Sbjct: 142 LIHWNSTLFGSIDEAVGKPHGIAIIALFVQ 171
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,412,353
Number of extensions: 969022
Number of successful extensions: 2833
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 2806
Number of HSP's successfully gapped: 27
Length of query: 263
Length of database: 18,874,504
Length adjustment: 101
Effective length of query: 162
Effective length of database: 15,507,568
Effective search space: 2512226016
Effective search space used: 2512226016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001860
(789 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005172.1| carbonic anhydrase 3 [Homo sapiens]. 305 3e-83
Alignment gi|NP_940986.1| carbonic anhydrase 13 [Homo sapiens]. 210 1e-54
Alignment gi|NP_000058.1| carbonic anhydrase 2 [Homo sapiens]. 201 8e-52
Alignment gi|NP_001158302.1| carbonic anhydrase 1 [Homo sapiens]. 189 2e-48
Alignment gi|NP_001122303.1| carbonic anhydrase 1 [Homo sapiens]. 189 2e-48
Alignment gi|NP_001122302.1| carbonic anhydrase 1 [Homo sapiens]. 189 2e-48
Alignment gi|NP_001122301.1| carbonic anhydrase 1 [Homo sapiens]. 189 2e-48
Alignment gi|NP_001729.1| carbonic anhydrase 1 [Homo sapiens]. 189 2e-48
Alignment gi|NP_005173.1| carbonic anhydrase 7 isoform 1 [Homo sapiens]. 171 5e-43
Alignment gi|NP_009151.1| carbonic anhydrase 5B, mitochondrial precursor ... 138 6e-33
>ref|NP_005172.1| carbonic anhydrase 3 [Homo sapiens].
Length = 260
Score = 305 bits (781), Expect = 3e-83
Identities = 157/260 (60%), Positives = 169/260 (65%), Gaps = 64/260 (24%)
Frame = +2
Query: 50 MAKEWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTIL 229
MAKEWGYA HNGPDHWHEL+P AKG+NQSP+ELHTKDI+HDPSL PW+ SYD GSAKTIL
Sbjct: 1 MAKEWGYASHNGPDHWHELFPNAKGENQSPVELHTKDIRHDPSLQPWSVSYDGGSAKTIL 60
Query: 230 NNGKTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL 409
NNGKTCRVVFDDTYDRSMLRGGPL YRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL
Sbjct: 61 NNGKTCRVVFDDTYDRSMLRGGPLPGPYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL 120
Query: 410 V-----------------------------HWNSKYNSFATALKH--------------- 457
V H N ++ F AL
Sbjct: 121 VHWNPKYNTFKEALKQRDGIAVIGIFLKIGHENGEFQIFLDALDKIKTKGKEAPFTKFDP 180
Query: 458 --------------------PDGVAVVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPL 577
P +V + LKEP+ VSSDQMAKLRSL SSAENEPPVPL
Sbjct: 181 SCLFPACRDYWTYQGSFTTPPCEECIVWLLLKEPMTVSSDQMAKLRSLLSSAENEPPVPL 240
Query: 578 VRNWRPPQPIKGRIVKASFK 637
V NWRPPQPI R+V+ASFK
Sbjct: 241 VSNWRPPQPINNRVVRASFK 260
>ref|NP_940986.1| carbonic anhydrase 13 [Homo sapiens].
Length = 262
Score = 210 bits (535), Expect = 1e-54
Identities = 99/168 (58%), Positives = 123/168 (73%), Gaps = 1/168 (0%)
Frame = +2
Query: 62 WGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNGK 241
WGY +HNGP HW E +PIA GD QSPIE+ TK++K+D SL P + YDP SAK I N+G
Sbjct: 6 WGYREHNGPIHWKEFFPIADGDQQSPIEIKTKEVKYDSSLRPLSIKYDPSSAKIISNSGH 65
Query: 242 TCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWN 421
+ V FDDT ++S+LRGGPLT +YRLRQ HLHWGS+DDHGSEH VDGV YAAELH+VHWN
Sbjct: 66 SFNVDFDDTENKSVLRGGPLTGSYRLRQVHLHWGSADDHGSEHIVDGVSYAAELHVVHWN 125
Query: 422 S-KYNSFATALKHPDGVAVVGIFLKEPINVSSDQMAKLRSLYSSAENE 562
S KY SF A PDG+AV+G+FL+ I + Q+ K+ S + +
Sbjct: 126 SDKYPSFVEAAHEPDGLAVLGVFLQ--IGEPNSQLQKITDTLDSIKEK 171
>ref|NP_000058.1| carbonic anhydrase 2 [Homo sapiens].
Length = 260
Score = 201 bits (510), Expect = 8e-52
Identities = 88/148 (59%), Positives = 110/148 (74%)
Frame = +2
Query: 50 MAKEWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTIL 229
M+ WGY HNGP+HWH+ +PIAKG+ QSP+++ T K+DPSL P + SYD ++ IL
Sbjct: 1 MSHHWGYGKHNGPEHWHKDFPIAKGERQSPVDIDTHTAKYDPSLKPLSVSYDQATSLRIL 60
Query: 230 NNGKTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL 409
NNG V FDD+ D+++L+GGPL YRL QFH HWGS D GSEHTVD KYAAELHL
Sbjct: 61 NNGHAFNVEFDDSQDKAVLKGGPLDGTYRLIQFHFHWGSLDGQGSEHTVDKKKYAAELHL 120
Query: 410 VHWNSKYNSFATALKHPDGVAVVGIFLK 493
VHWN+KY F A++ PDG+AV+GIFLK
Sbjct: 121 VHWNTKYGDFGKAVQQPDGLAVLGIFLK 148
Score = 63.2 bits (152), Expect = 3e-10
Identities = 31/55 (56%), Positives = 38/55 (69%)
Frame = +2
Query: 473 VVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPLVRNWRPPQPIKGRIVKASFK 637
V I LKEPI+VSS+Q+ K R L + E EP +V NWRP QP+K R +KASFK
Sbjct: 206 VTWIVLKEPISVSSEQVLKFRKLNFNGEGEPEELMVDNWRPAQPLKNRQIKASFK 260
>ref|NP_001158302.1| carbonic anhydrase 1 [Homo sapiens].
Length = 261
Score = 189 bits (480), Expect = 2e-48
Identities = 83/146 (56%), Positives = 112/146 (76%), Gaps = 1/146 (0%)
Frame = +2
Query: 59 EWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNG 238
+WGY D NGP+ W +LYPIA G+NQSP+++ T + KHD SL P + SY+P +AK I+N G
Sbjct: 5 DWGYDDKNGPEQWSKLYPIANGNNQSPVDIKTSETKHDTSLKPISVSYNPATAKEIINVG 64
Query: 239 KTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHW 418
+ V F+D +RS+L+GGP + +YRL QFH HWGS+++HGSEHTVDGVKY+AELH+ HW
Sbjct: 65 HSFHVNFEDNDNRSVLKGGPFSDSYRLFQFHFHWGSTNEHGSEHTVDGVKYSAELHVAHW 124
Query: 419 NS-KYNSFATALKHPDGVAVVGIFLK 493
NS KY+S A A DG+AV+G+ +K
Sbjct: 125 NSAKYSSLAEAASKADGLAVIGVLMK 150
Score = 59.3 bits (142), Expect = 4e-09
Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Frame = +2
Query: 434 SFATALKHPDGV-AVVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPLVRNWRPPQPIK 610
++ +L HP +V I KE I+VSS+Q+A+ RSL S+ E + VP+ N RP QP+K
Sbjct: 194 TYPGSLTHPPLYESVTWIICKESISVSSEQLAQFRSLLSNVEGDNAVPMQHNNRPTQPLK 253
Query: 611 GRIVKASF 634
GR V+ASF
Sbjct: 254 GRTVRASF 261
>ref|NP_001122303.1| carbonic anhydrase 1 [Homo sapiens].
Length = 261
Score = 189 bits (480), Expect = 2e-48
Identities = 83/146 (56%), Positives = 112/146 (76%), Gaps = 1/146 (0%)
Frame = +2
Query: 59 EWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNG 238
+WGY D NGP+ W +LYPIA G+NQSP+++ T + KHD SL P + SY+P +AK I+N G
Sbjct: 5 DWGYDDKNGPEQWSKLYPIANGNNQSPVDIKTSETKHDTSLKPISVSYNPATAKEIINVG 64
Query: 239 KTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHW 418
+ V F+D +RS+L+GGP + +YRL QFH HWGS+++HGSEHTVDGVKY+AELH+ HW
Sbjct: 65 HSFHVNFEDNDNRSVLKGGPFSDSYRLFQFHFHWGSTNEHGSEHTVDGVKYSAELHVAHW 124
Query: 419 NS-KYNSFATALKHPDGVAVVGIFLK 493
NS KY+S A A DG+AV+G+ +K
Sbjct: 125 NSAKYSSLAEAASKADGLAVIGVLMK 150
Score = 59.3 bits (142), Expect = 4e-09
Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Frame = +2
Query: 434 SFATALKHPDGV-AVVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPLVRNWRPPQPIK 610
++ +L HP +V I KE I+VSS+Q+A+ RSL S+ E + VP+ N RP QP+K
Sbjct: 194 TYPGSLTHPPLYESVTWIICKESISVSSEQLAQFRSLLSNVEGDNAVPMQHNNRPTQPLK 253
Query: 611 GRIVKASF 634
GR V+ASF
Sbjct: 254 GRTVRASF 261
>ref|NP_001122302.1| carbonic anhydrase 1 [Homo sapiens].
Length = 261
Score = 189 bits (480), Expect = 2e-48
Identities = 83/146 (56%), Positives = 112/146 (76%), Gaps = 1/146 (0%)
Frame = +2
Query: 59 EWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNG 238
+WGY D NGP+ W +LYPIA G+NQSP+++ T + KHD SL P + SY+P +AK I+N G
Sbjct: 5 DWGYDDKNGPEQWSKLYPIANGNNQSPVDIKTSETKHDTSLKPISVSYNPATAKEIINVG 64
Query: 239 KTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHW 418
+ V F+D +RS+L+GGP + +YRL QFH HWGS+++HGSEHTVDGVKY+AELH+ HW
Sbjct: 65 HSFHVNFEDNDNRSVLKGGPFSDSYRLFQFHFHWGSTNEHGSEHTVDGVKYSAELHVAHW 124
Query: 419 NS-KYNSFATALKHPDGVAVVGIFLK 493
NS KY+S A A DG+AV+G+ +K
Sbjct: 125 NSAKYSSLAEAASKADGLAVIGVLMK 150
Score = 59.3 bits (142), Expect = 4e-09
Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Frame = +2
Query: 434 SFATALKHPDGV-AVVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPLVRNWRPPQPIK 610
++ +L HP +V I KE I+VSS+Q+A+ RSL S+ E + VP+ N RP QP+K
Sbjct: 194 TYPGSLTHPPLYESVTWIICKESISVSSEQLAQFRSLLSNVEGDNAVPMQHNNRPTQPLK 253
Query: 611 GRIVKASF 634
GR V+ASF
Sbjct: 254 GRTVRASF 261
>ref|NP_001122301.1| carbonic anhydrase 1 [Homo sapiens].
Length = 261
Score = 189 bits (480), Expect = 2e-48
Identities = 83/146 (56%), Positives = 112/146 (76%), Gaps = 1/146 (0%)
Frame = +2
Query: 59 EWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNG 238
+WGY D NGP+ W +LYPIA G+NQSP+++ T + KHD SL P + SY+P +AK I+N G
Sbjct: 5 DWGYDDKNGPEQWSKLYPIANGNNQSPVDIKTSETKHDTSLKPISVSYNPATAKEIINVG 64
Query: 239 KTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHW 418
+ V F+D +RS+L+GGP + +YRL QFH HWGS+++HGSEHTVDGVKY+AELH+ HW
Sbjct: 65 HSFHVNFEDNDNRSVLKGGPFSDSYRLFQFHFHWGSTNEHGSEHTVDGVKYSAELHVAHW 124
Query: 419 NS-KYNSFATALKHPDGVAVVGIFLK 493
NS KY+S A A DG+AV+G+ +K
Sbjct: 125 NSAKYSSLAEAASKADGLAVIGVLMK 150
Score = 59.3 bits (142), Expect = 4e-09
Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Frame = +2
Query: 434 SFATALKHPDGV-AVVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPLVRNWRPPQPIK 610
++ +L HP +V I KE I+VSS+Q+A+ RSL S+ E + VP+ N RP QP+K
Sbjct: 194 TYPGSLTHPPLYESVTWIICKESISVSSEQLAQFRSLLSNVEGDNAVPMQHNNRPTQPLK 253
Query: 611 GRIVKASF 634
GR V+ASF
Sbjct: 254 GRTVRASF 261
>ref|NP_001729.1| carbonic anhydrase 1 [Homo sapiens].
Length = 261
Score = 189 bits (480), Expect = 2e-48
Identities = 83/146 (56%), Positives = 112/146 (76%), Gaps = 1/146 (0%)
Frame = +2
Query: 59 EWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNG 238
+WGY D NGP+ W +LYPIA G+NQSP+++ T + KHD SL P + SY+P +AK I+N G
Sbjct: 5 DWGYDDKNGPEQWSKLYPIANGNNQSPVDIKTSETKHDTSLKPISVSYNPATAKEIINVG 64
Query: 239 KTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHW 418
+ V F+D +RS+L+GGP + +YRL QFH HWGS+++HGSEHTVDGVKY+AELH+ HW
Sbjct: 65 HSFHVNFEDNDNRSVLKGGPFSDSYRLFQFHFHWGSTNEHGSEHTVDGVKYSAELHVAHW 124
Query: 419 NS-KYNSFATALKHPDGVAVVGIFLK 493
NS KY+S A A DG+AV+G+ +K
Sbjct: 125 NSAKYSSLAEAASKADGLAVIGVLMK 150
Score = 59.3 bits (142), Expect = 4e-09
Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Frame = +2
Query: 434 SFATALKHPDGV-AVVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPLVRNWRPPQPIK 610
++ +L HP +V I KE I+VSS+Q+A+ RSL S+ E + VP+ N RP QP+K
Sbjct: 194 TYPGSLTHPPLYESVTWIICKESISVSSEQLAQFRSLLSNVEGDNAVPMQHNNRPTQPLK 253
Query: 611 GRIVKASF 634
GR V+ASF
Sbjct: 254 GRTVRASF 261
>ref|NP_005173.1| carbonic anhydrase 7 isoform 1 [Homo sapiens].
Length = 264
Score = 171 bits (434), Expect = 5e-43
Identities = 77/145 (53%), Positives = 102/145 (70%), Gaps = 1/145 (0%)
Frame = +2
Query: 62 WGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNGK 241
WGY +GP HWH+LYPIA+GD QSPI + + + PSL P SY+ + +I NNG
Sbjct: 7 WGYGQDDGPSHWHKLYPIAQGDRQSPINIISSQAVYSPSLQPLELSYEACMSLSITNNGH 66
Query: 242 TCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWN 421
+ +V F+D+ DR+++ GGPL YRL+QFH HWG D GSEHTVDG + +ELHLVHWN
Sbjct: 67 SVQVDFNDSDDRTVVTGGPLEGPYRLKQFHFHWGKKHDVGSEHTVDGKSFPSELHLVHWN 126
Query: 422 S-KYNSFATALKHPDGVAVVGIFLK 493
+ KY++F A PDG+AVVG+FL+
Sbjct: 127 AKKYSTFGEAASAPDGLAVVGVFLE 151
>ref|NP_009151.1| carbonic anhydrase 5B, mitochondrial precursor [Homo sapiens].
Length = 317
Score = 138 bits (347), Expect = 6e-33
Identities = 64/134 (47%), Positives = 89/134 (66%), Gaps = 1/134 (0%)
Frame = +2
Query: 95 WHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNGKTCRVVFDDTYD 274
W + + GD QSPI + +D +DP L P T SYDP + + NNG + V F+D+ D
Sbjct: 52 WESVDLVPGGDRQSPINIRWRDSVYDPGLKPLTISYDPATCLHVWNNGYSFLVEFEDSTD 111
Query: 275 RSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWNS-KYNSFATAL 451
+S+++GGPL YRL+QFH HWG+ D GSEHTVD + AELHLVHWN+ ++ +F A
Sbjct: 112 KSVIKGGPLEHNYRLKQFHFHWGAIDAWGSEHTVDSKCFPAELHLVHWNAVRFENFEDAA 171
Query: 452 KHPDGVAVVGIFLK 493
+G+AV+G+FLK
Sbjct: 172 LEENGLAVIGVFLK 185
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,820,861
Number of extensions: 952381
Number of successful extensions: 3011
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 2977
Number of HSP's successfully gapped: 37
Length of query: 263
Length of database: 18,297,164
Length adjustment: 101
Effective length of query: 162
Effective length of database: 14,967,800
Effective search space: 2424783600
Effective search space used: 2424783600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001860
(789 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031632.2| carbonic anhydrase 3 [Mus musculus]. 301 4e-82
Alignment gi|NP_078771.1| carbonic anhydrase 13 [Mus musculus]. 216 2e-56
Alignment gi|NP_033931.4| carbonic anhydrase 2 [Mus musculus]. 201 5e-52
Alignment gi|NP_001077426.1| carbonic anhydrase 1 [Mus musculus]. 191 5e-49
Alignment gi|NP_033929.2| carbonic anhydrase 1 [Mus musculus]. 191 5e-49
Alignment gi|NP_444300.1| carbonic anhydrase 7 [Mus musculus]. 164 9e-41
Alignment gi|NP_851832.2| carbonic anhydrase 5B, mitochondrial precursor ... 144 8e-35
Alignment gi|NP_031634.2| carbonic anhydrase 5A, mitochondrial precursor ... 133 1e-31
Alignment gi|NP_848483.3| carbonic anhydrase 12 precursor [Mus musculus]. 97 1e-20
Alignment gi|NP_031618.2| carbonic anhydrase-related protein [Mus musculu... 97 2e-20
>ref|NP_031632.2| carbonic anhydrase 3 [Mus musculus].
Length = 260
Score = 301 bits (771), Expect = 4e-82
Identities = 136/148 (91%), Positives = 140/148 (94%)
Frame = +2
Query: 50 MAKEWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTIL 229
MAKEWGYA HNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSL PW+ASYDPGSAKTIL
Sbjct: 1 MAKEWGYASHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLQPWSASYDPGSAKTIL 60
Query: 230 NNGKTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL 409
NNGKTCRVVFDDTYDRSMLRGGPL+ YRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL
Sbjct: 61 NNGKTCRVVFDDTYDRSMLRGGPLSGPYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL 120
Query: 410 VHWNSKYNSFATALKHPDGVAVVGIFLK 493
VHWN KYN+F ALK PDG+AVVGIFLK
Sbjct: 121 VHWNPKYNTFGEALKQPDGIAVVGIFLK 148
Score = 97.8 bits (242), Expect = 8e-21
Identities = 48/70 (68%), Positives = 56/70 (80%)
Frame = +2
Query: 428 YNSFATALKHPDGVAVVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPLVRNWRPPQPI 607
+ SF T P +V + LKEP+ VSSDQMAKLRSL+SSAENEPPVPLV NWRPPQP+
Sbjct: 194 HGSFTTP---PCEECIVWLLLKEPMTVSSDQMAKLRSLFSSAENEPPVPLVGNWRPPQPV 250
Query: 608 KGRIVKASFK 637
KGR+V+ASFK
Sbjct: 251 KGRVVRASFK 260
>ref|NP_078771.1| carbonic anhydrase 13 [Mus musculus].
Length = 262
Score = 216 bits (550), Expect = 2e-56
Identities = 103/179 (57%), Positives = 129/179 (72%), Gaps = 1/179 (0%)
Frame = +2
Query: 62 WGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNGK 241
WGY +HNGP HW+EL+PIA GD QSPIE+ TK++K+D SL P + YDP SAK I N+G
Sbjct: 6 WGYGEHNGPIHWNELFPIADGDQQSPIEIKTKEVKYDSSLRPLSIKYDPASAKIISNSGH 65
Query: 242 TCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWN 421
+ V FDDT D+S+LRGGPLT YRLRQFHLHWGS+DDHGSEH VDGV+YAAELH+VHWN
Sbjct: 66 SFNVDFDDTEDKSVLRGGPLTGNYRLRQFHLHWGSADDHGSEHVVDGVRYAAELHVVHWN 125
Query: 422 S-KYNSFATALKHPDGVAVVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPLVRNWRP 595
S KY SF A DG+AV+G+FL+ I + Q+ K+ + S + + N+ P
Sbjct: 126 SDKYPSFVEAAHESDGLAVLGVFLQ--IGEHNPQLQKITDILDSIKEKGKQTRFTNFDP 182
Score = 61.2 bits (147), Expect = 8e-10
Identities = 30/55 (54%), Positives = 40/55 (72%)
Frame = +2
Query: 470 AVVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPLVRNWRPPQPIKGRIVKASF 634
+V I LK+PI++SS Q+A+ RSL +AE E L+ N RPPQP+KGR V+ASF
Sbjct: 207 SVTWIVLKQPISISSQQLARFRSLLCTAEGESAAFLLSNHRPPQPLKGRRVRASF 261
>ref|NP_033931.4| carbonic anhydrase 2 [Mus musculus].
Length = 260
Score = 201 bits (511), Expect = 5e-52
Identities = 96/205 (46%), Positives = 133/205 (64%)
Frame = +2
Query: 50 MAKEWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTIL 229
M+ WGY+ HNGP++WH+ +PIA GD QSP+++ T +HDP+L P SYD ++K+I+
Sbjct: 1 MSHHWGYSKHNGPENWHKDFPIANGDRQSPVDIDTATAQHDPALQPLLISYDKAASKSIV 60
Query: 230 NNGKTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL 409
NNG + V FDD+ D ++L+GGPL+ +YRL QFH HWGSSD GSEHTV+ KYAAELHL
Sbjct: 61 NNGHSFNVEFDDSQDNAVLKGGPLSDSYRLIQFHFHWGSSDGQGSEHTVNKKKYAAELHL 120
Query: 410 VHWNSKYNSFATALKHPDGVAVVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPLVRNW 589
VHWN+KY F A++ PDG+AV+GIFLK I +S + K+ S + + N+
Sbjct: 121 VHWNTKYGDFGKAVQQPDGLAVLGIFLK--IGPASQGLQKVLEALHSIKTKGKRAAFANF 178
Query: 590 RPPQPIKGRIVKASFK*GCWSLPSS 664
P + G + W+ P S
Sbjct: 179 DPCSLLPGNL-------DYWTYPGS 196
>ref|NP_001077426.1| carbonic anhydrase 1 [Mus musculus].
Length = 261
Score = 191 bits (485), Expect = 5e-49
Identities = 88/172 (51%), Positives = 123/172 (71%), Gaps = 3/172 (1%)
Frame = +2
Query: 59 EWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNG 238
+WGY NGPD W +LYPIA G+NQSPI++ T + HD SL P + SY+P +AK I+N G
Sbjct: 5 DWGYGSENGPDQWSKLYPIANGNNQSPIDIKTSEANHDSSLKPLSISYNPATAKEIVNVG 64
Query: 239 KTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHW 418
+ V+FDD+ ++S+L+GGPL +YRL QFH HWG+S+DHGSEHTVDG +Y+ ELHLVHW
Sbjct: 65 HSFHVIFDDSSNQSVLKGGPLADSYRLTQFHFHWGNSNDHGSEHTVDGTRYSGELHLVHW 124
Query: 419 NS-KYNSFATALKHPDGVAVVGIFLK-EPINVSSDQ-MAKLRSLYSSAENEP 565
NS KY+S + A+ DG+A++G+ +K P N S + + L S+ + + P
Sbjct: 125 NSAKYSSASEAISKADGLAILGVLMKVGPANPSLQKVLDALNSVKTKGKRAP 176
>ref|NP_033929.2| carbonic anhydrase 1 [Mus musculus].
Length = 261
Score = 191 bits (485), Expect = 5e-49
Identities = 88/172 (51%), Positives = 123/172 (71%), Gaps = 3/172 (1%)
Frame = +2
Query: 59 EWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNG 238
+WGY NGPD W +LYPIA G+NQSPI++ T + HD SL P + SY+P +AK I+N G
Sbjct: 5 DWGYGSENGPDQWSKLYPIANGNNQSPIDIKTSEANHDSSLKPLSISYNPATAKEIVNVG 64
Query: 239 KTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHW 418
+ V+FDD+ ++S+L+GGPL +YRL QFH HWG+S+DHGSEHTVDG +Y+ ELHLVHW
Sbjct: 65 HSFHVIFDDSSNQSVLKGGPLADSYRLTQFHFHWGNSNDHGSEHTVDGTRYSGELHLVHW 124
Query: 419 NS-KYNSFATALKHPDGVAVVGIFLK-EPINVSSDQ-MAKLRSLYSSAENEP 565
NS KY+S + A+ DG+A++G+ +K P N S + + L S+ + + P
Sbjct: 125 NSAKYSSASEAISKADGLAILGVLMKVGPANPSLQKVLDALNSVKTKGKRAP 176
>ref|NP_444300.1| carbonic anhydrase 7 [Mus musculus].
Length = 264
Score = 164 bits (414), Expect = 9e-41
Identities = 74/145 (51%), Positives = 100/145 (68%), Gaps = 1/145 (0%)
Frame = +2
Query: 62 WGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNGK 241
WGY +GP +WH+LYPIA+GD QSPI + + + PSL P Y+ + +I NNG
Sbjct: 7 WGYGQDDGPSNWHKLYPIAQGDRQSPINIISSQAVYSPSLQPLELFYEACMSLSITNNGH 66
Query: 242 TCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWN 421
+ +V F+D+ DR+++ GGPL YRL+Q H HWG D GSEHTVDG + +ELHLVHWN
Sbjct: 67 SVQVDFNDSDDRTVVSGGPLEGPYRLKQLHFHWGKKRDMGSEHTVDGKSFPSELHLVHWN 126
Query: 422 S-KYNSFATALKHPDGVAVVGIFLK 493
+ KY++F A PDG+AVVG+FL+
Sbjct: 127 AKKYSTFGEAAAAPDGLAVVGVFLE 151
>ref|NP_851832.2| carbonic anhydrase 5B, mitochondrial precursor [Mus musculus].
Length = 317
Score = 144 bits (363), Expect = 8e-35
Identities = 75/159 (47%), Positives = 96/159 (60%), Gaps = 3/159 (1%)
Frame = +2
Query: 26 RPVPTKTTMAKEWGYADHNG--PDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTAS 199
R VP ++ Y N P W L + GD QSPI + +D +DP L P T S
Sbjct: 27 RLVPRRSCSLYTCTYRTRNRALPPLWENLDLVPAGDRQSPINIRWRDSVYDPGLKPLTIS 86
Query: 200 YDPGSAKTILNNGKTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVD 379
YDP + I NNG + V F+D+ D+S++ GGPL YRL+QFH HWG+ D GSEHTVD
Sbjct: 87 YDPATCLHIWNNGYSFLVEFEDSTDKSVVEGGPLEHNYRLKQFHFHWGAIDAWGSEHTVD 146
Query: 380 GVKYAAELHLVHWNS-KYNSFATALKHPDGVAVVGIFLK 493
Y AELHLVHWN+ K+ SF A +G+AV+G+FLK
Sbjct: 147 SKCYPAELHLVHWNAVKFESFEDAALEENGLAVIGVFLK 185
>ref|NP_031634.2| carbonic anhydrase 5A, mitochondrial precursor [Mus musculus].
Length = 299
Score = 133 bits (335), Expect = 1e-31
Identities = 65/127 (51%), Positives = 84/127 (66%), Gaps = 1/127 (0%)
Frame = +2
Query: 116 AKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNGKTCRVVFDDTYDRSMLRGG 295
A+G QSPI + KD +DP L P SYD S + + N G +V FDD+ + S + GG
Sbjct: 53 AEGTRQSPINIQWKDSVYDPQLAPLRVSYDAASCRYLWNTGYFFQVEFDDSCEDSGISGG 112
Query: 296 PLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWNS-KYNSFATALKHPDGVA 472
PL YRL+QFH HWG++D+ GSEH VDG Y AELHLVHWNS KY ++ A +G+A
Sbjct: 113 PLGNHYRLKQFHFHWGATDEWGSEHAVDGHTYPAELHLVHWNSTKYENYKKASVGENGLA 172
Query: 473 VVGIFLK 493
V+G+FLK
Sbjct: 173 VIGVFLK 179
>ref|NP_848483.3| carbonic anhydrase 12 precursor [Mus musculus].
Length = 354
Score = 97.1 bits (240), Expect = 1e-20
Identities = 58/161 (36%), Positives = 86/161 (53%), Gaps = 5/161 (3%)
Frame = +2
Query: 26 RPVPTKTTMAKEWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYD 205
+P + +W Y G +W + YP G QSPI+LH+ +++D SL P
Sbjct: 20 QPSSSAPLNGSKWTYVGPAGEKNWSKKYPSCGGLLQSPIDLHSDILQYDASLAPLQFQGY 79
Query: 206 PGSAKTILN---NGKTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDD-HGSEHT 373
S + +LN +G + R+ + M G YR Q HLHWG+ +D HGSEHT
Sbjct: 80 NVSVEKLLNLTNDGHSVRL----NLNSDMYIQGLQPHHYRAEQLHLHWGNRNDPHGSEHT 135
Query: 374 VDGVKYAAELHLVHWNSK-YNSFATALKHPDGVAVVGIFLK 493
V G +AAELH+VH+NS Y F+TA +G+AV+ + ++
Sbjct: 136 VSGKHFAAELHIVHYNSDLYPDFSTASDKSEGLAVLAVLIE 176
>ref|NP_031618.2| carbonic anhydrase-related protein [Mus musculus].
Length = 291
Score = 96.7 bits (239), Expect = 2e-20
Identities = 54/150 (36%), Positives = 84/150 (56%), Gaps = 5/150 (3%)
Frame = +2
Query: 59 EWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTAS--YDPGSAKTILN 232
EWGY + W ++P A G+ QSPI L++++ ++DPSLL S Y + N
Sbjct: 29 EWGYEEGV---EWGLVFPDANGEYQSPINLNSREARYDPSLLDVRLSPNYVVCRDCEVTN 85
Query: 233 NGKTCRVVFDDTYDRSMLRGGPLTAA--YRLRQFHLHWGSSDDHGSEHTVDGVKYAAELH 406
+G T +V+ +S+L GGPL + L + HWG + GSEHTV+ + ELH
Sbjct: 86 DGHTIQVILKS---KSVLSGGPLPQGQEFELYEVRFHWGRENQRGSEHTVNFKAFPMELH 142
Query: 407 LVHWNSK-YNSFATALKHPDGVAVVGIFLK 493
L+HWNS + S A+ P G+A++ +F++
Sbjct: 143 LIHWNSTLFGSIDEAVGKPHGIAIIALFVQ 172
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,593,791
Number of extensions: 798518
Number of successful extensions: 2423
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 2400
Number of HSP's successfully gapped: 25
Length of query: 263
Length of database: 15,617,559
Length adjustment: 99
Effective length of query: 164
Effective length of database: 12,643,995
Effective search space: 2073615180
Effective search space used: 2073615180
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001860
(789 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001008688.1| carbonic anhydrase 3 [Sus scrofa]. 323 9e-89
Alignment gi|XP_003355077.1| PREDICTED: carbonic anhydrase 3-like [Sus sc... 236 8e-63
Alignment gi|XP_001924497.2| PREDICTED: carbonic anhydrase 13 [Sus scrofa]. 220 8e-58
Alignment gi|XP_001927840.1| PREDICTED: carbonic anhydrase 2 [Sus scrofa]. 196 2e-50
Alignment gi|XP_003355076.1| PREDICTED: carbonic anhydrase 3-like [Sus sc... 190 7e-49
Alignment gi|XP_001924218.1| PREDICTED: carbonic anhydrase 1 [Sus scrofa]. 184 4e-47
Alignment gi|XP_001926850.1| PREDICTED: carbonic anhydrase 5B, mitochondr... 139 2e-33
Alignment gi|NP_001137588.1| carbonic anhydrase 6 [Sus scrofa]. 102 3e-22
Alignment gi|XP_001926916.1| PREDICTED: carbonic anhydrase-related protei... 97 1e-20
Alignment gi|XP_001924916.3| PREDICTED: carbonic anhydrase 14-like [Sus s... 91 9e-19
>ref|NP_001008688.1| carbonic anhydrase 3 [Sus scrofa].
Length = 260
Score = 323 bits (827), Expect = 9e-89
Identities = 148/148 (100%), Positives = 148/148 (100%)
Frame = +2
Query: 50 MAKEWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTIL 229
MAKEWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTIL
Sbjct: 1 MAKEWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTIL 60
Query: 230 NNGKTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL 409
NNGKTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL
Sbjct: 61 NNGKTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL 120
Query: 410 VHWNSKYNSFATALKHPDGVAVVGIFLK 493
VHWNSKYNSFATALKHPDGVAVVGIFLK
Sbjct: 121 VHWNSKYNSFATALKHPDGVAVVGIFLK 148
Score = 105 bits (261), Expect = 4e-23
Identities = 54/70 (77%), Positives = 57/70 (81%)
Frame = +2
Query: 428 YNSFATALKHPDGVAVVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPLVRNWRPPQPI 607
+ SF T P +V + LKEPI VSSDQMAKLRSLYSSAENEPPVPLVRNWRPPQPI
Sbjct: 194 HGSFTTP---PCEECIVWLLLKEPITVSSDQMAKLRSLYSSAENEPPVPLVRNWRPPQPI 250
Query: 608 KGRIVKASFK 637
KGRIVKASFK
Sbjct: 251 KGRIVKASFK 260
>ref|XP_003355077.1| PREDICTED: carbonic anhydrase 3-like [Sus scrofa].
Length = 260
Score = 236 bits (603), Expect = 8e-63
Identities = 105/148 (70%), Positives = 124/148 (83%)
Frame = +2
Query: 50 MAKEWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTIL 229
M+ WGY HNGP+HWH+ +PIAKGD QSP++++T HDP+L P + Y+ +++ I+
Sbjct: 1 MSHHWGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRIV 60
Query: 230 NNGKTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL 409
NNG + V FD + D+ +LRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL
Sbjct: 61 NNGHSFNVEFDSSQDKGVLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL 120
Query: 410 VHWNSKYNSFATALKHPDGVAVVGIFLK 493
VHWNSKYNSFATALKHPDGVAVVGIFLK
Sbjct: 121 VHWNSKYNSFATALKHPDGVAVVGIFLK 148
Score = 105 bits (261), Expect = 4e-23
Identities = 54/70 (77%), Positives = 57/70 (81%)
Frame = +2
Query: 428 YNSFATALKHPDGVAVVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPLVRNWRPPQPI 607
+ SF T P +V + LKEPI VSSDQMAKLRSLYSSAENEPPVPLVRNWRPPQPI
Sbjct: 194 HGSFTTP---PCEECIVWLLLKEPITVSSDQMAKLRSLYSSAENEPPVPLVRNWRPPQPI 250
Query: 608 KGRIVKASFK 637
KGRIVKASFK
Sbjct: 251 KGRIVKASFK 260
>ref|XP_001924497.2| PREDICTED: carbonic anhydrase 13 [Sus scrofa].
Length = 243
Score = 220 bits (560), Expect = 8e-58
Identities = 104/179 (58%), Positives = 130/179 (72%), Gaps = 1/179 (0%)
Frame = +2
Query: 62 WGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNGK 241
WGY +HNGP HW+E +PIA GD QSPIE+ TK++K+D SL P + YDP SAK I N+G
Sbjct: 6 WGYGEHNGPVHWNEFFPIADGDQQSPIEIKTKEVKYDSSLRPLSIKYDPSSAKIISNSGH 65
Query: 242 TCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWN 421
+ V FDDT D+S+LRGGPLT +YRLRQFHLHWGS+DDHGSEH VDGVKYAAELH+VHWN
Sbjct: 66 SFSVDFDDTEDKSVLRGGPLTGSYRLRQFHLHWGSADDHGSEHVVDGVKYAAELHVVHWN 125
Query: 422 S-KYNSFATALKHPDGVAVVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPLVRNWRP 595
S KY SF A PDG+AV+G+FL+ I + Q+ K+ + S + + N+ P
Sbjct: 126 SDKYPSFVEAAHEPDGLAVLGVFLQ--IGEHNSQLQKITDILDSIKEKGKQTRFTNFDP 182
>ref|XP_001927840.1| PREDICTED: carbonic anhydrase 2 [Sus scrofa].
Length = 260
Score = 196 bits (497), Expect = 2e-50
Identities = 84/148 (56%), Positives = 108/148 (72%)
Frame = +2
Query: 50 MAKEWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTIL 229
M+ WGY HNGP+HWH+ +PIAKGD QSP++++T HDP+L P + Y+ +++ I+
Sbjct: 1 MSHHWGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSLCYEQATSQRIV 60
Query: 230 NNGKTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL 409
NNG + V FD + D+ +L GGPL YRL QFH HWGSSD GSEHTVD KYAAELHL
Sbjct: 61 NNGHSFNVEFDSSQDKGVLEGGPLAGTYRLIQFHFHWGSSDGQGSEHTVDKKKYAAELHL 120
Query: 410 VHWNSKYNSFATALKHPDGVAVVGIFLK 493
VHWN+KY F A + PDG+AV+G+FLK
Sbjct: 121 VHWNTKYKDFGEAAQQPDGLAVLGVFLK 148
Score = 63.5 bits (153), Expect = 1e-10
Identities = 30/56 (53%), Positives = 40/56 (71%)
Frame = +2
Query: 470 AVVGIFLKEPINVSSDQMAKLRSLYSSAENEPPVPLVRNWRPPQPIKGRIVKASFK 637
+V I L+EPI+VSS QM K R+L + E EP P+V NWRP QP+K R ++ASF+
Sbjct: 205 SVTWIVLREPISVSSGQMMKFRTLNFNKEGEPEHPMVDNWRPTQPLKNRQIRASFQ 260
>ref|XP_003355076.1| PREDICTED: carbonic anhydrase 3-like [Sus scrofa].
Length = 182
Score = 190 bits (483), Expect = 7e-49
Identities = 87/94 (92%), Positives = 87/94 (92%)
Frame = +2
Query: 50 MAKEWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTIL 229
MAKEWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTIL
Sbjct: 1 MAKEWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTIL 60
Query: 230 NNGKTCRVVFDDTYDRSMLRGGPLTAAYRLRQFH 331
NNGKTCRVVFDDTYDRS LRGGPL AA L H
Sbjct: 61 NNGKTCRVVFDDTYDRSTLRGGPLHAAPSLASHH 94
>ref|XP_001924218.1| PREDICTED: carbonic anhydrase 1 [Sus scrofa].
Length = 261
Score = 184 bits (468), Expect = 4e-47
Identities = 81/145 (55%), Positives = 109/145 (75%), Gaps = 1/145 (0%)
Frame = +2
Query: 62 WGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAKTILNNGK 241
WGY GP+HW ++YPIA G+NQSPI++ T + KHD SL P + SY+P +AK I+N G
Sbjct: 6 WGYDGEYGPEHWSKVYPIANGNNQSPIDIKTSETKHDTSLKPISVSYNPATAKEIINVGH 65
Query: 242 TCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWN 421
+ V F+D +RS+L+ GPL+ +YRL QFH HWG +DD+GSEH VDG KY+AELH+VHWN
Sbjct: 66 SFHVNFEDNDNRSVLKDGPLSESYRLLQFHFHWGKTDDYGSEHLVDGAKYSAELHIVHWN 125
Query: 422 S-KYNSFATALKHPDGVAVVGIFLK 493
S KY+S A A H DG+A++G+ +K
Sbjct: 126 SAKYSSAAEAASHADGLAIIGVLVK 150
>ref|XP_001926850.1| PREDICTED: carbonic anhydrase 5B, mitochondrial-like [Sus scrofa].
Length = 317
Score = 139 bits (350), Expect = 2e-33
Identities = 73/164 (44%), Positives = 97/164 (59%), Gaps = 3/164 (1%)
Frame = +2
Query: 11 RESSSRPVPTKTTMAKEWGYADHNGPDH--WHELYPIAKGDNQSPIELHTKDIKHDPSLL 184
R S+RP T Y N H W + G+ QSPI + +D +DP L
Sbjct: 27 RSMSARPCSLYTCT-----YKTRNRDLHPLWESADLVPAGERQSPINIRWRDSVYDPGLK 81
Query: 185 PWTASYDPGSAKTILNNGKTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDDHGS 364
P T SYDP + + NNG + V F+D+ D+S++ GGPL YRL+QFH HWG+ D GS
Sbjct: 82 PLTISYDPTTCLHVWNNGYSFLVEFEDSTDKSVIEGGPLEHNYRLKQFHFHWGAIDAWGS 141
Query: 365 EHTVDGVKYAAELHLVHWNS-KYNSFATALKHPDGVAVVGIFLK 493
EHTVD Y AELHLVHWN+ K+ +F A + +G+AV+G+FLK
Sbjct: 142 EHTVDSKCYPAELHLVHWNAVKFENFEDAAQEENGLAVIGVFLK 185
>ref|NP_001137588.1| carbonic anhydrase 6 [Sus scrofa].
Length = 317
Score = 102 bits (253), Expect = 3e-22
Identities = 56/151 (37%), Positives = 82/151 (54%), Gaps = 5/151 (3%)
Frame = +2
Query: 41 KTTMAKEWGYADHNGPD-HWHELYPIAKGDNQSPIELHTKDIKHDPSL--LPWTASYDPG 211
+T EW Y+D + HW YP G QSPI++ K ++++P+L L T
Sbjct: 16 QTQHGAEWTYSDGELDEAHWSREYPDCDGRRQSPIDVQRKSVQYNPALRALSLTGYEAQE 75
Query: 212 SAKTILNNGKTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWGS--SDDHGSEHTVDGV 385
+++NNG T ++ T M P Y +Q H HWG S+ GSEHT+DG+
Sbjct: 76 GEFSMINNGHTVQISLPST----MRLTAPDGTQYIAKQMHFHWGGAFSEISGSEHTIDGI 131
Query: 386 KYAAELHLVHWNSKYNSFATALKHPDGVAVV 478
+Y E+H+VH+NSKY S+ A PDG+AV+
Sbjct: 132 RYVTEVHVVHYNSKYKSYDEAQTAPDGLAVL 162
>ref|XP_001926916.1| PREDICTED: carbonic anhydrase-related protein-like [Sus scrofa].
Length = 291
Score = 96.7 bits (239), Expect = 1e-20
Identities = 54/150 (36%), Positives = 84/150 (56%), Gaps = 5/150 (3%)
Frame = +2
Query: 59 EWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTAS--YDPGSAKTILN 232
EWGY + W ++P A G+ QSPI L++++ ++DPSLL S Y + N
Sbjct: 29 EWGYEEGV---EWGLVFPDANGEYQSPINLNSREARYDPSLLDVRLSPNYVVCRDCEVTN 85
Query: 233 NGKTCRVVFDDTYDRSMLRGGPLTAA--YRLRQFHLHWGSSDDHGSEHTVDGVKYAAELH 406
+G T +V+ +S+L GGPL + L + HWG + GSEHTV+ + ELH
Sbjct: 86 DGHTIQVILKS---KSVLSGGPLPQGHEFELYEVRFHWGRENQRGSEHTVNFKAFPMELH 142
Query: 407 LVHWNSK-YNSFATALKHPDGVAVVGIFLK 493
L+HWNS + S A+ P G+A++ +F++
Sbjct: 143 LIHWNSTLFGSIDEAVGKPHGIAIIALFVQ 172
>ref|XP_001924916.3| PREDICTED: carbonic anhydrase 14-like [Sus scrofa].
Length = 340
Score = 90.5 bits (223), Expect = 9e-19
Identities = 57/151 (37%), Positives = 80/151 (52%), Gaps = 5/151 (3%)
Frame = +2
Query: 56 KEWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTA-SYD-PGSAKTIL 229
+ W Y +G DHW YP + QSPI + T + DP LLP Y+ PG+ L
Sbjct: 20 QHWTYEGPHGQDHWPASYPECGSNAQSPINIQTDSVTFDPELLPLQPHGYEQPGTEPLDL 79
Query: 230 -NNGKTCRVVFDDTYDRSMLRGGPLTAAYRLRQFHLHWG-SSDDHGSEHTVDGVKYAAEL 403
NNG T + + ++ G L Y Q HLHWG GSEH ++G AAEL
Sbjct: 80 HNNGHTGKNAXQLSLPPTLHLEG-LPRKYVAAQLHLHWGQKGSPGGSEHKINGEATAAEL 138
Query: 404 HLVHWNSK-YNSFATALKHPDGVAVVGIFLK 493
H+VH++S+ Y S + A + P G+AV+GI ++
Sbjct: 139 HIVHYDSESYASLSEAAQQPQGLAVLGILVE 169
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,215,795
Number of extensions: 600177
Number of successful extensions: 1808
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 1791
Number of HSP's successfully gapped: 21
Length of query: 263
Length of database: 11,343,932
Length adjustment: 97
Effective length of query: 166
Effective length of database: 8,928,923
Effective search space: 1482201218
Effective search space used: 1482201218
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001860
(789 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 484 e-134
>Sscrofa_Chr04
|| Length = 143465943
Score = 484 bits (244), Expect = e-134
Identities = 266/272 (97%), Gaps = 1/272 (0%)
Strand = Plus / Minus
Query: 518 cagatggccaagctgcgaagcctctactccagtgcggagaacgagccccctgtcccccta 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56191374 cagatggccaagctgcgaagcctctactccagtgcggagaacgagccccctgtcccccta 56191315
Query: 578 gtgaggaactggcgccccccacagcctatcaagggcaggatagtgaaggcctccttcaaa 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56191314 gtgaggaactggcgccccccacagcctatcaagggcaggatagtgaaggcctccttcaaa 56191255
Query: 638 tgaggctgctggagcttgccctcttcaggaaagggaaacctgctactgcagagcttggtt 697
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 56191254 tgaggctgctggagcttgccctcttcaggaaa-ggaaacctgctactgcagagcttggtt 56191196
Query: 698 ccttgcctccttttggtgctccctattccaagtattatttcagttttccacactgaacca 757
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
Sbjct: 56191195 ccttgcctccttttggtgctccttattccaagtattatttcagttttccacactgagcaa 56191136
Query: 758 tggaggtgagagctgcaatcaccaggaaccaa 789
|| ||||||||||||||||||||| |||||||
Sbjct: 56191135 tgaaggtgagagctgcaatcaccaagaaccaa 56191104
Score = 387 bits (195), Expect = e-105
Identities = 198/199 (99%)
Strand = Plus / Minus
Query: 83 ggtcctgaccactggcatgaactttacccaattgccaagggagacaaccaatcgcccatt 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56199954 ggtcctgaccactggcatgaactttacccaattgccaagggagacaaccaatcgcccatt 56199895
Query: 143 gaactgcacactaaggacatcaagcacgacccttctctgctgccctggacagcatcttat 202
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 56199894 gaactgcacactaaggacatcaagcatgacccttctctgctgccctggacagcatcttat 56199835
Query: 203 gaccctggctctgccaagaccatcctgaacaatgggaagacctgcagggttgtatttgat 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56199834 gaccctggctctgccaagaccatcctgaacaatgggaagacctgcagggttgtatttgat 56199775
Query: 263 gatacttatgacaggtcaa 281
|||||||||||||||||||
Sbjct: 56199774 gatacttatgacaggtcaa 56199756
Score = 236 bits (119), Expect = 1e-59
Identities = 119/119 (100%)
Strand = Plus / Minus
Query: 282 tgctgagaggtggtcctctcactgcagcctaccggcttcgccagtttcatcttcactggg 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56197352 tgctgagaggtggtcctctcactgcagcctaccggcttcgccagtttcatcttcactggg 56197293
Query: 342 gctcctcagatgatcacggatctgagcacactgtggatggagtcaagtatgctgcggag 400
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56197292 gctcctcagatgatcacggatctgagcacactgtggatggagtcaagtatgctgcggag 56197234
Score = 190 bits (96), Expect = 8e-46
Identities = 96/96 (100%)
Strand = Plus / Minus
Query: 399 agctccatttggttcattggaattcaaagtataacagttttgcaactgctctgaagcacc 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56195512 agctccatttggttcattggaattcaaagtataacagttttgcaactgctctgaagcacc 56195453
Query: 459 ctgatggagtggctgtagttggcatttttctgaagg 494
||||||||||||||||||||||||||||||||||||
Sbjct: 56195452 ctgatggagtggctgtagttggcatttttctgaagg 56195417
Score = 168 bits (85), Expect = 3e-39
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 1 acggcgtggaagagaaagcagcagccgtccagtgcccacgaagacgaccatggccaagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56200762 acggcgtggaagagaaagcagcagccgtccagtgcccacgaagacgaccatggccaagga 56200703
Query: 61 gtggggctacgccgaccacaatggt 85
|||||||||||||||||||||||||
Sbjct: 56200702 gtggggctacgccgaccacaatggt 56200678
Score = 58.0 bits (29), Expect = 8e-06
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 488 ctgaaggagcccatcaacgtgagctctgaccag 520
|||||||||||||||| ||||||||||||||||
Sbjct: 56192380 ctgaaggagcccatcaccgtgagctctgaccag 56192348
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,733,903
Number of extensions: 430
Number of successful extensions: 430
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 429
Number of HSP's successfully gapped: 6
Length of query: 789
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 768
Effective length of database: 2,808,413,156
Effective search space: 2156861303808
Effective search space used: 2156861303808
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)