Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001866
(1078 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001015600.1| keratin, type I cytoskeletal 19 [Bos taurus]. 404 e-135
Alignment gi|NP_001098792.1| keratin, type I cytoskeletal 17 [Bos taurus]. 328 e-103
Alignment gi|NP_001124219.1| keratin, type I cytoskeletal 13 [Bos taurus]. 309 e-101
Alignment gi|NP_001160047.1| keratin, type I cytoskeletal 14 [Bos taurus]. 322 e-100
Alignment gi|XP_002696036.1| PREDICTED: keratin 13-like [Bos taurus]. 298 5e-96
Alignment gi|XP_002702249.1| PREDICTED: keratin 13-like [Bos taurus]. 298 5e-96
Alignment gi|XP_002696056.1| PREDICTED: keratin 12-like [Bos taurus]. 278 1e-88
Alignment gi|XP_001255462.1| PREDICTED: keratin 12-like [Bos taurus]. 278 1e-88
Alignment gi|XP_001788780.1| PREDICTED: keratin 13-like isoform 2 [Bos ta... 268 3e-84
Alignment gi|NP_776802.1| keratin, type I cytoskeletal 10 [Bos taurus]. 266 7e-84
>ref|NP_001015600.1| keratin, type I cytoskeletal 19 [Bos taurus].
Length = 399
Score = 404 bits (1037), Expect(2) = e-135
Identities = 213/271 (78%), Positives = 223/271 (82%)
Frame = +3
Query: 108 FGGLGGGSVRFSAGGAFRAPSIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 287
FGG+GGGS+RF AGGAFRAPSIH
Sbjct: 15 FGGMGGGSMRFGAGGAFRAPSIHGGSGGRGVSVSSARFVSSSSGGYGGGYGGALATSDGL 74
Query: 288 XXXXXXXXNEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHY 467
NEKLTMQNLNDRLASYLEKVRALE+ANGDLEVKIRDWYQKQGPGPARDYSHY
Sbjct: 75 LAG-----NEKLTMQNLNDRLASYLEKVRALEEANGDLEVKIRDWYQKQGPGPARDYSHY 129
Query: 468 FKTIEDLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVL 647
FKTIEDLRD+ILGATIENSKIVLQIDNARLAADDFRTKFETEQALR+SVEADINGLRRVL
Sbjct: 130 FKTIEDLRDQILGATIENSKIVLQIDNARLAADDFRTKFETEQALRMSVEADINGLRRVL 189
Query: 648 DELTLARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILS 827
DELTLARTDLE+QIEGLKEELAYLKKNHEEE+S LKGQVGGQVSVEVDSAPGIDLAKILS
Sbjct: 190 DELTLARTDLEMQIEGLKEELAYLKKNHEEEMSVLKGQVGGQVSVEVDSAPGIDLAKILS 249
Query: 828 DMRSQYEVMAEQNRKDAEAWFTSRTEELNRE 920
DMRSQYEV+AE+NRKDAEAWF S+TEELNRE
Sbjct: 250 DMRSQYEVIAEKNRKDAEAWFISQTEELNRE 280
Score = 98.6 bits (244), Expect(2) = e-135
Identities = 51/53 (96%), Positives = 52/53 (98%)
Frame = +1
Query: 919 KVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRFGA 1077
+VAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETE RFGA
Sbjct: 280 EVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEARFGA 332
>ref|NP_001098792.1| keratin, type I cytoskeletal 17 [Bos taurus].
Length = 441
Score = 328 bits (840), Expect(2) = e-103
Identities = 160/202 (79%), Positives = 187/202 (92%)
Frame = +3
Query: 315 EKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLRD 494
EK TMQNLNDRLASYL+KVRALE+AN +LE+KIRDWYQKQ PGPA DYS YFKTIEDLR+
Sbjct: 92 EKATMQNLNDRLASYLDKVRALEEANTELELKIRDWYQKQAPGPAPDYSSYFKTIEDLRN 151
Query: 495 KILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLARTD 674
KI AT++N+ ++LQIDNARLAADDFRTKFETEQALR+SVEADINGLRRVLDELTLAR D
Sbjct: 152 KIHTATVDNANLLLQIDNARLAADDFRTKFETEQALRVSVEADINGLRRVLDELTLARAD 211
Query: 675 LELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEVM 854
LE+QIE LKEELAYL+KNHEEE+ AL+GQVGG+++VE+D+APG+DL++IL++MR QYE M
Sbjct: 212 LEMQIENLKEELAYLRKNHEEEMKALRGQVGGEINVEMDAAPGVDLSRILNEMRDQYEKM 271
Query: 855 AEQNRKDAEAWFTSRTEELNRE 920
AE+NRKDAE WF S+TEELNRE
Sbjct: 272 AEKNRKDAEDWFFSKTEELNRE 293
Score = 68.2 bits (165), Expect(2) = e-103
Identities = 34/51 (66%), Positives = 45/51 (88%)
Frame = +1
Query: 919 KVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRF 1071
+VA ++E +Q K+E+++LRRTLQ LEIELQSQLSMKA+LEG+LAETE R+
Sbjct: 293 EVATNSELVQSGKSEISELRRTLQALEIELQSQLSMKASLEGSLAETENRY 343
>ref|NP_001124219.1| keratin, type I cytoskeletal 13 [Bos taurus].
Length = 453
Score = 309 bits (792), Expect(2) = e-101
Identities = 152/204 (74%), Positives = 177/204 (86%), Gaps = 1/204 (0%)
Frame = +3
Query: 312 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGP-GPARDYSHYFKTIEDL 488
NEK+TMQNLNDRLASYLEKVRALE+AN DLEVKIRDWYQ+Q P P RDYS YFKTI++L
Sbjct: 102 NEKITMQNLNDRLASYLEKVRALEEANADLEVKIRDWYQRQSPTSPERDYSPYFKTIDEL 161
Query: 489 RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 668
RDKIL A I+NS+++L+IDNARLAADDFR K E E ALR SVEADINGLRRVLDELTL +
Sbjct: 162 RDKILAAAIKNSQVILEIDNARLAADDFRLKHENEMALRQSVEADINGLRRVLDELTLTK 221
Query: 669 TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 848
TDLE+QIE L EELAYLKKNHEEE+ Q+ GQV+VE+D+AP +DL ++LS+MR QYE
Sbjct: 222 TDLEMQIESLNEELAYLKKNHEEEMKEFSNQLAGQVNVEMDAAPAVDLTRVLSEMREQYE 281
Query: 849 VMAEQNRKDAEAWFTSRTEELNRE 920
MAE+NR+DAEAWF S+TEELN+E
Sbjct: 282 AMAEKNRRDAEAWFFSKTEELNKE 305
Score = 79.7 bits (195), Expect(2) = e-101
Identities = 40/53 (75%), Positives = 46/53 (86%)
Frame = +1
Query: 919 KVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRFGA 1077
+VA +TE +Q SKTE+TDLRRT+QGLEIELQSQLSMKA LE TLAETE R+ A
Sbjct: 305 EVASNTEMIQTSKTEITDLRRTIQGLEIELQSQLSMKAGLESTLAETECRYAA 357
>ref|NP_001160047.1| keratin, type I cytoskeletal 14 [Bos taurus].
Length = 477
Score = 322 bits (826), Expect(2) = e-100
Identities = 158/203 (77%), Positives = 186/203 (91%)
Frame = +3
Query: 312 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLR 491
+EK+TMQNLNDRLASYL+KVRALE+AN DLEVKIRDWYQ+Q P +DYS YFKTIEDLR
Sbjct: 120 SEKVTMQNLNDRLASYLDKVRALEEANADLEVKIRDWYQRQRPAEIKDYSPYFKTIEDLR 179
Query: 492 DKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLART 671
+KIL AT++N+ +VLQIDNARLAADDFRTK+ETE LRLSVEADINGLRRVLDELTLAR
Sbjct: 180 NKILTATVDNANVVLQIDNARLAADDFRTKYETELNLRLSVEADINGLRRVLDELTLARA 239
Query: 672 DLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEV 851
DLE+QIE LKEELAYL+KNHEEE+++L+GQVGG V+VE+D+APG+DL++IL++MR QYE
Sbjct: 240 DLEMQIESLKEELAYLRKNHEEEMNSLRGQVGGDVNVEMDAAPGVDLSRILNEMRDQYEK 299
Query: 852 MAEQNRKDAEAWFTSRTEELNRE 920
MAE+NRKDAE WF S+TEELNRE
Sbjct: 300 MAEKNRKDAEDWFFSKTEELNRE 322
Score = 62.4 bits (150), Expect(2) = e-100
Identities = 31/51 (60%), Positives = 43/51 (84%)
Frame = +1
Query: 919 KVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRF 1071
+VA ++E +Q K+E+++LRRTLQ LEIELQSQLSMKA+LE +L ET+ R+
Sbjct: 322 EVATNSELVQSGKSEISELRRTLQNLEIELQSQLSMKASLENSLEETKGRY 372
>ref|XP_002696036.1| PREDICTED: keratin 13-like [Bos taurus].
Length = 434
Score = 298 bits (764), Expect(2) = 5e-96
Identities = 148/204 (72%), Positives = 175/204 (85%), Gaps = 1/204 (0%)
Frame = +3
Query: 312 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGP-GPARDYSHYFKTIEDL 488
NEK+TMQNLNDRLASYLEKVRALE+AN DLEVKIRDW+ KQ P P RDYS YFKTI++L
Sbjct: 99 NEKITMQNLNDRLASYLEKVRALEEANADLEVKIRDWHLKQTPTSPERDYSPYFKTIDEL 158
Query: 489 RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 668
RDKIL ATI+N++I+L+IDNARLAADDFR K+E E LR SVEADINGLRRVLDELTL +
Sbjct: 159 RDKILAATIDNNRIILEIDNARLAADDFRLKYENELTLRQSVEADINGLRRVLDELTLTK 218
Query: 669 TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 848
TDLE+QIE L EELAYLKKNHEEE+ Q+ GQV+VE+D+ PGIDL ++L++MR QYE
Sbjct: 219 TDLEMQIESLNEELAYLKKNHEEEMKEFSKQMVGQVNVEMDATPGIDLTRVLAEMREQYE 278
Query: 849 VMAEQNRKDAEAWFTSRTEELNRE 920
MAE+NR+DAE WF S++ ELN+E
Sbjct: 279 AMAEKNRRDAEEWFHSKSAELNKE 302
Score = 72.0 bits (175), Expect(2) = 5e-96
Identities = 37/51 (72%), Positives = 42/51 (82%)
Frame = +1
Query: 919 KVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRF 1071
+V T +Q SKTE+T+LRRTLQGLEIELQSQLSMKA LE TLAETE R+
Sbjct: 302 EVTSSTALIQTSKTEITELRRTLQGLEIELQSQLSMKAGLESTLAETECRY 352
>ref|XP_002702249.1| PREDICTED: keratin 13-like [Bos taurus].
Length = 434
Score = 298 bits (764), Expect(2) = 5e-96
Identities = 148/204 (72%), Positives = 175/204 (85%), Gaps = 1/204 (0%)
Frame = +3
Query: 312 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGP-GPARDYSHYFKTIEDL 488
NEK+TMQNLNDRLASYLEKVRALE+AN DLEVKIRDW+ KQ P P RDYS YFKTI++L
Sbjct: 99 NEKITMQNLNDRLASYLEKVRALEEANADLEVKIRDWHLKQTPTSPERDYSPYFKTIDEL 158
Query: 489 RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 668
RDKIL ATI+N++I+L+IDNARLAADDFR K+E E LR SVEADINGLRRVLDELTL +
Sbjct: 159 RDKILAATIDNNRIILEIDNARLAADDFRLKYENELTLRQSVEADINGLRRVLDELTLTK 218
Query: 669 TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 848
TDLE+QIE L EELAYLKKNHEEE+ Q+ GQV+VE+D+ PGIDL ++L++MR QYE
Sbjct: 219 TDLEMQIESLNEELAYLKKNHEEEMKEFSKQMVGQVNVEMDATPGIDLTRVLAEMREQYE 278
Query: 849 VMAEQNRKDAEAWFTSRTEELNRE 920
MAE+NR+DAE WF S++ ELN+E
Sbjct: 279 AMAEKNRRDAEEWFHSKSAELNKE 302
Score = 72.0 bits (175), Expect(2) = 5e-96
Identities = 37/51 (72%), Positives = 42/51 (82%)
Frame = +1
Query: 919 KVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRF 1071
+V T +Q SKTE+T+LRRTLQGLEIELQSQLSMKA LE TLAETE R+
Sbjct: 302 EVTSSTALIQTSKTEITELRRTLQGLEIELQSQLSMKAGLESTLAETECRY 352
>ref|XP_002696056.1| PREDICTED: keratin 12-like [Bos taurus].
Length = 532
Score = 278 bits (711), Expect(2) = 1e-88
Identities = 140/208 (67%), Positives = 170/208 (81%), Gaps = 5/208 (2%)
Frame = +3
Query: 312 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQG-----PGPARDYSHYFKT 476
+EK TM+NLNDRLASYL+KVRALE+AN DLE KIR+WY+ +G PG DYS Y+
Sbjct: 161 SEKETMKNLNDRLASYLDKVRALEEANTDLETKIREWYETRGSGTGDPGSQNDYSKYYPL 220
Query: 477 IEDLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDEL 656
IEDLR+KI+ A IEN++++LQIDNARLAADDFR K+E E AL +VEADINGLRRVLDEL
Sbjct: 221 IEDLRNKIISANIENAQLILQIDNARLAADDFRMKYENELALCQNVEADINGLRRVLDEL 280
Query: 657 TLARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMR 836
TLAR DLE QIE L EELAYLKKNHEEE+ + + GQVSVE+D+APG+DL ++L+DMR
Sbjct: 281 TLARADLETQIETLNEELAYLKKNHEEELQSCRAGGPGQVSVEMDAAPGVDLTRLLNDMR 340
Query: 837 SQYEVMAEQNRKDAEAWFTSRTEELNRE 920
+QYE +AEQNRKDAEAWF ++ EL +E
Sbjct: 341 AQYETIAEQNRKDAEAWFIEKSGELRKE 368
Score = 67.8 bits (164), Expect(2) = 1e-88
Identities = 34/48 (70%), Positives = 42/48 (87%)
Frame = +1
Query: 919 KVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETE 1062
+++ +TEQLQ SK+EVTDLRR LQ LEIELQSQL+MK +LE +LAETE
Sbjct: 368 EISSNTEQLQSSKSEVTDLRRALQNLEIELQSQLAMKKSLEDSLAETE 415
>ref|XP_001255462.1| PREDICTED: keratin 12-like [Bos taurus].
Length = 532
Score = 278 bits (711), Expect(2) = 1e-88
Identities = 140/208 (67%), Positives = 170/208 (81%), Gaps = 5/208 (2%)
Frame = +3
Query: 312 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQG-----PGPARDYSHYFKT 476
+EK TM+NLNDRLASYL+KVRALE+AN DLE KIR+WY+ +G PG DYS Y+
Sbjct: 161 SEKETMKNLNDRLASYLDKVRALEEANTDLETKIREWYETRGSGTGDPGSQNDYSKYYPL 220
Query: 477 IEDLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDEL 656
IEDLR+KI+ A IEN++++LQIDNARLAADDFR K+E E AL +VEADINGLRRVLDEL
Sbjct: 221 IEDLRNKIISANIENAQLILQIDNARLAADDFRMKYENELALCQNVEADINGLRRVLDEL 280
Query: 657 TLARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMR 836
TLAR DLE QIE L EELAYLKKNHEEE+ + + GQVSVE+D+APG+DL ++L+DMR
Sbjct: 281 TLARADLETQIETLNEELAYLKKNHEEELQSCRAGGPGQVSVEMDAAPGVDLTRLLNDMR 340
Query: 837 SQYEVMAEQNRKDAEAWFTSRTEELNRE 920
+QYE +AEQNRKDAEAWF ++ EL +E
Sbjct: 341 AQYETIAEQNRKDAEAWFIEKSGELRKE 368
Score = 67.8 bits (164), Expect(2) = 1e-88
Identities = 34/48 (70%), Positives = 42/48 (87%)
Frame = +1
Query: 919 KVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETE 1062
+++ +TEQLQ SK+EVTDLRR LQ LEIELQSQL+MK +LE +LAETE
Sbjct: 368 EISSNTEQLQSSKSEVTDLRRALQNLEIELQSQLAMKKSLEDSLAETE 415
>ref|XP_001788780.1| PREDICTED: keratin 13-like isoform 2 [Bos taurus].
Length = 566
Score = 268 bits (684), Expect(2) = 3e-84
Identities = 131/206 (63%), Positives = 170/206 (82%), Gaps = 3/206 (1%)
Frame = +3
Query: 312 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPG---PARDYSHYFKTIE 482
NEK+TMQNLNDRLASYL+KVRALE++N +LEVKI++WY+K G RDYS Y++TI+
Sbjct: 126 NEKITMQNLNDRLASYLDKVRALEESNYELEVKIKEWYEKYGNSRQREPRDYSKYYQTID 185
Query: 483 DLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTL 662
DL+++I T +N+ I++Q+DNARLAADDFR K+E E LR SVEADINGLRRVLDELTL
Sbjct: 186 DLKNQIFNLTTDNANILIQVDNARLAADDFRLKYENEVTLRQSVEADINGLRRVLDELTL 245
Query: 663 ARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQ 842
+TDLE+QIE L EELAYLKKNHEEE+ L+ G V+VE+++APG+DL ++L++MRSQ
Sbjct: 246 TKTDLEMQIESLTEELAYLKKNHEEEMRDLQNVSTGDVNVEMNAAPGVDLTELLNNMRSQ 305
Query: 843 YEVMAEQNRKDAEAWFTSRTEELNRE 920
YE +AE+NR+DAEAWF +++EL E
Sbjct: 306 YEQLAEKNRRDAEAWFNEKSKELTTE 331
Score = 63.5 bits (153), Expect(2) = 3e-84
Identities = 30/53 (56%), Positives = 43/53 (81%)
Frame = +1
Query: 913 TGKVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRF 1071
T ++ + EQ+ K+E+T+LRRT+QGLEIELQSQL++K +LE +LAETE R+
Sbjct: 329 TTEINSNLEQVSSHKSEITELRRTIQGLEIELQSQLALKQSLEASLAETEGRY 381
>ref|NP_776802.1| keratin, type I cytoskeletal 10 [Bos taurus].
Length = 526
Score = 266 bits (681), Expect(2) = 7e-84
Identities = 130/206 (63%), Positives = 170/206 (82%), Gaps = 3/206 (1%)
Frame = +3
Query: 312 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPG---PARDYSHYFKTIE 482
N+K+TMQNLNDRLASYL+KVRALE++N +LEVKI++WY+K G RDYS Y++TI+
Sbjct: 126 NQKITMQNLNDRLASYLDKVRALEESNYELEVKIKEWYEKYGNSRQREPRDYSKYYQTID 185
Query: 483 DLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTL 662
DL+++I T +N+ I++Q+DNARLAADDFR K+E E LR SVEADINGLRRVLDELTL
Sbjct: 186 DLKNQIFNLTTDNANILIQVDNARLAADDFRLKYENEVTLRQSVEADINGLRRVLDELTL 245
Query: 663 ARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQ 842
+TDLE+QIE L EELAYLKKNHEEE+ L+ G V+VE+++APG+DL ++L++MRSQ
Sbjct: 246 TKTDLEMQIESLTEELAYLKKNHEEEMRDLQNVSTGDVNVEMNAAPGVDLTELLNNMRSQ 305
Query: 843 YEVMAEQNRKDAEAWFTSRTEELNRE 920
YE +AE+NR+DAEAWF +++EL E
Sbjct: 306 YEQLAEKNRRDAEAWFNEKSKELTTE 331
Score = 63.5 bits (153), Expect(2) = 7e-84
Identities = 30/53 (56%), Positives = 43/53 (81%)
Frame = +1
Query: 913 TGKVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRF 1071
T ++ + EQ+ K+E+T+LRRT+QGLEIELQSQL++K +LE +LAETE R+
Sbjct: 329 TTEINSNLEQVSSHKSEITELRRTIQGLEIELQSQLALKQSLEASLAETEGRY 381
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,227,268
Number of extensions: 1019549
Number of successful extensions: 5814
Number of sequences better than 1.0e-05: 102
Number of HSP's gapped: 5607
Number of HSP's successfully gapped: 144
Length of query: 359
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 256
Effective length of database: 14,273,310
Effective search space: 3653967360
Effective search space used: 3653967360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001866
(1078 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_548099.2| PREDICTED: similar to keratin 17n [Canis famili... 332 e-107
Alignment gi|XP_548100.1| PREDICTED: similar to type I keratin KA17 isofo... 333 e-105
Alignment gi|XP_862372.1| PREDICTED: similar to keratin 13 isoform a isof... 314 e-102
Alignment gi|XP_862399.1| PREDICTED: similar to keratin 13 isoform a isof... 314 e-102
Alignment gi|XP_548101.2| PREDICTED: similar to Keratin, type I cytoskele... 322 e-101
Alignment gi|XP_862344.1| PREDICTED: similar to keratin 13 isoform a isof... 296 2e-95
Alignment gi|XP_548106.2| PREDICTED: similar to keratin 13 isoform a isof... 296 2e-95
Alignment gi|XP_850765.1| PREDICTED: similar to keratin 13 isoform a isof... 295 6e-95
Alignment gi|XP_861773.1| PREDICTED: similar to type I keratin KA17 isofo... 287 4e-91
Alignment gi|NP_001013443.1| keratin, type I cytoskeletal 10 [Canis lupus... 270 1e-85
>ref|XP_548099.2| PREDICTED: similar to keratin 17n [Canis familiaris].
Length = 469
Score = 332 bits (852), Expect(2) = e-107
Identities = 163/203 (80%), Positives = 188/203 (92%)
Frame = +3
Query: 312 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLR 491
+EK TMQNLNDRLASYL+KVRALE+AN DLEVKI DWY+KQGPGPARDYSH+FKTIE+LR
Sbjct: 110 SEKETMQNLNDRLASYLDKVRALEEANADLEVKIHDWYKKQGPGPARDYSHFFKTIEELR 169
Query: 492 DKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLART 671
+KIL ATI+N+ +VLQIDNARLAADDFRTK+ETE LR+SVEAD NGLRRVLDELTLAR
Sbjct: 170 NKILAATIDNASLVLQIDNARLAADDFRTKYETELNLRMSVEADTNGLRRVLDELTLARA 229
Query: 672 DLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEV 851
DLE+QIE LKEELAYLKKNHEEE++AL+GQVGG VSVE+D+APG+DL++IL++MR QYE
Sbjct: 230 DLEMQIESLKEELAYLKKNHEEEMNALRGQVGGDVSVEMDAAPGVDLSRILNEMRDQYEK 289
Query: 852 MAEQNRKDAEAWFTSRTEELNRE 920
MAE+NRKDAE WF S+TEELNRE
Sbjct: 290 MAEKNRKDAEDWFFSKTEELNRE 312
Score = 76.3 bits (186), Expect(2) = e-107
Identities = 38/53 (71%), Positives = 48/53 (90%)
Frame = +1
Query: 919 KVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRFGA 1077
+VA +TE LQ S+TE+T+LRR++Q LEIELQSQLSMKA+LEG+LAETE R+GA
Sbjct: 312 EVATNTEALQSSRTEITELRRSVQNLEIELQSQLSMKASLEGSLAETEARYGA 364
>ref|XP_548100.1| PREDICTED: similar to type I keratin KA17 isoform 1 [Canis
familiaris].
Length = 433
Score = 333 bits (854), Expect(2) = e-105
Identities = 161/202 (79%), Positives = 190/202 (94%)
Frame = +3
Query: 315 EKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLRD 494
EK TMQNLNDRLASYL+KVRALE+AN +LEVKIRDWYQKQ PGPARDYSHY++TIEDL++
Sbjct: 84 EKATMQNLNDRLASYLDKVRALEEANTELEVKIRDWYQKQAPGPARDYSHYYQTIEDLKN 143
Query: 495 KILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLARTD 674
KIL AT++N+ I+LQIDNARLAADDFRTKFETEQALR+SVEAD NGLRRVLDELTL+R D
Sbjct: 144 KILTATVDNANILLQIDNARLAADDFRTKFETEQALRVSVEADTNGLRRVLDELTLSRAD 203
Query: 675 LELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEVM 854
LE+QIE LKEELAYL+KNHEEE++AL+GQVGG+++VE+D+APG+DL++ILS+MR QYE M
Sbjct: 204 LEMQIENLKEELAYLRKNHEEEMNALRGQVGGEINVEMDAAPGVDLSRILSEMRDQYEKM 263
Query: 855 AEQNRKDAEAWFTSRTEELNRE 920
AE+NRKDAE WF S+TEELNRE
Sbjct: 264 AEKNRKDAEDWFFSKTEELNRE 285
Score = 67.0 bits (162), Expect(2) = e-105
Identities = 33/51 (64%), Positives = 45/51 (88%)
Frame = +1
Query: 919 KVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRF 1071
+VA ++E +Q K+E+++LRRT+Q LEIELQSQLSMKA+LEG+LAETE R+
Sbjct: 285 EVATNSELVQSGKSEISELRRTVQALEIELQSQLSMKASLEGSLAETENRY 335
>ref|XP_862372.1| PREDICTED: similar to keratin 13 isoform a isoform 6 [Canis
familiaris].
Length = 811
Score = 314 bits (805), Expect(2) = e-102
Identities = 153/204 (75%), Positives = 179/204 (87%), Gaps = 1/204 (0%)
Frame = +3
Query: 312 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPG-PARDYSHYFKTIEDL 488
NEK+TMQNLNDRLASYL+KV ALE+ANGDLEVKIRDWYQKQ P P RDYS YFKTIE+L
Sbjct: 106 NEKITMQNLNDRLASYLDKVHALEEANGDLEVKIRDWYQKQSPSSPERDYSPYFKTIEEL 165
Query: 489 RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 668
RDKIL ATI+NS+++L+IDNARLAADDFR K+E E LR VEADINGLRRVLDELTLA+
Sbjct: 166 RDKILAATIDNSRVILEIDNARLAADDFRLKYENELTLRQGVEADINGLRRVLDELTLAK 225
Query: 669 TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 848
DLE+QIEGL EELAYLKKNHEEE+ Q+ GQV+VE+D+APG+DL ++L++MR QYE
Sbjct: 226 ADLEMQIEGLNEELAYLKKNHEEEMKEFSSQLAGQVNVEMDAAPGVDLTRVLAEMREQYE 285
Query: 849 VMAEQNRKDAEAWFTSRTEELNRE 920
MAE+NR+DAEAWF S+TEELN+E
Sbjct: 286 AMAEKNRRDAEAWFFSKTEELNKE 309
Score = 76.6 bits (187), Expect(2) = e-102
Identities = 38/51 (74%), Positives = 45/51 (88%)
Frame = +1
Query: 919 KVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRF 1071
+VA +TE +Q SKTE+TDLRRT+QGLEIELQSQLSMKA LE +LAETE R+
Sbjct: 309 EVASNTEMIQTSKTEITDLRRTMQGLEIELQSQLSMKAGLESSLAETECRY 359
Score = 296 bits (759), Expect(2) = 2e-95
Identities = 145/204 (71%), Positives = 176/204 (86%), Gaps = 1/204 (0%)
Frame = +3
Query: 312 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPG-PARDYSHYFKTIEDL 488
NEK+TMQNLNDRLASYL+KVRALE+AN +LEVKIRDW+ KQ P P RDYS Y+KTIE+L
Sbjct: 499 NEKITMQNLNDRLASYLDKVRALEEANTELEVKIRDWHLKQSPSSPERDYSPYYKTIEEL 558
Query: 489 RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 668
RDKIL ATI+N++++L+IDNARLAADDFR K+E E LR SVEADINGLRRVLDELTL++
Sbjct: 559 RDKILAATIDNNRVILEIDNARLAADDFRLKYENELTLRQSVEADINGLRRVLDELTLSK 618
Query: 669 TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 848
TDLE+QIE L EELAYLKKNHEEE+ Q+ GQV+VE+D+ PGIDL ++L++MR QYE
Sbjct: 619 TDLEMQIESLNEELAYLKKNHEEEMKEFSNQMVGQVNVEMDATPGIDLTRVLAEMREQYE 678
Query: 849 VMAEQNRKDAEAWFTSRTEELNRE 920
MAE+NR+DAE WF S++ ELN+E
Sbjct: 679 AMAEKNRRDAEEWFHSKSAELNKE 702
Score = 72.0 bits (175), Expect(2) = 2e-95
Identities = 36/51 (70%), Positives = 44/51 (86%)
Frame = +1
Query: 919 KVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRF 1071
+V+ +T +Q SKTE+T+LRRTLQGLEIELQSQLSMKA LE TLA+TE R+
Sbjct: 702 EVSTNTAMIQTSKTEITELRRTLQGLEIELQSQLSMKAGLESTLADTECRY 752
>ref|XP_862399.1| PREDICTED: similar to keratin 13 isoform a isoform 7 [Canis
familiaris].
Length = 807
Score = 314 bits (805), Expect(2) = e-102
Identities = 153/204 (75%), Positives = 179/204 (87%), Gaps = 1/204 (0%)
Frame = +3
Query: 312 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPG-PARDYSHYFKTIEDL 488
NEK+TMQNLNDRLASYL+KV ALE+ANGDLEVKIRDWYQKQ P P RDYS YFKTIE+L
Sbjct: 102 NEKITMQNLNDRLASYLDKVHALEEANGDLEVKIRDWYQKQSPSSPERDYSPYFKTIEEL 161
Query: 489 RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 668
RDKIL ATI+NS+++L+IDNARLAADDFR K+E E LR VEADINGLRRVLDELTLA+
Sbjct: 162 RDKILAATIDNSRVILEIDNARLAADDFRLKYENELTLRQGVEADINGLRRVLDELTLAK 221
Query: 669 TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 848
DLE+QIEGL EELAYLKKNHEEE+ Q+ GQV+VE+D+APG+DL ++L++MR QYE
Sbjct: 222 ADLEMQIEGLNEELAYLKKNHEEEMKEFSSQLAGQVNVEMDAAPGVDLTRVLAEMREQYE 281
Query: 849 VMAEQNRKDAEAWFTSRTEELNRE 920
MAE+NR+DAEAWF S+TEELN+E
Sbjct: 282 AMAEKNRRDAEAWFFSKTEELNKE 305
Score = 76.6 bits (187), Expect(2) = e-102
Identities = 38/51 (74%), Positives = 45/51 (88%)
Frame = +1
Query: 919 KVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRF 1071
+VA +TE +Q SKTE+TDLRRT+QGLEIELQSQLSMKA LE +LAETE R+
Sbjct: 305 EVASNTEMIQTSKTEITDLRRTMQGLEIELQSQLSMKAGLESSLAETECRY 355
Score = 296 bits (759), Expect(2) = 2e-95
Identities = 145/204 (71%), Positives = 176/204 (86%), Gaps = 1/204 (0%)
Frame = +3
Query: 312 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPG-PARDYSHYFKTIEDL 488
NEK+TMQNLNDRLASYL+KVRALE+AN +LEVKIRDW+ KQ P P RDYS Y+KTIE+L
Sbjct: 495 NEKITMQNLNDRLASYLDKVRALEEANTELEVKIRDWHLKQSPSSPERDYSPYYKTIEEL 554
Query: 489 RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 668
RDKIL ATI+N++++L+IDNARLAADDFR K+E E LR SVEADINGLRRVLDELTL++
Sbjct: 555 RDKILAATIDNNRVILEIDNARLAADDFRLKYENELTLRQSVEADINGLRRVLDELTLSK 614
Query: 669 TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 848
TDLE+QIE L EELAYLKKNHEEE+ Q+ GQV+VE+D+ PGIDL ++L++MR QYE
Sbjct: 615 TDLEMQIESLNEELAYLKKNHEEEMKEFSNQMVGQVNVEMDATPGIDLTRVLAEMREQYE 674
Query: 849 VMAEQNRKDAEAWFTSRTEELNRE 920
MAE+NR+DAE WF S++ ELN+E
Sbjct: 675 AMAEKNRRDAEEWFHSKSAELNKE 698
Score = 72.0 bits (175), Expect(2) = 2e-95
Identities = 36/51 (70%), Positives = 44/51 (86%)
Frame = +1
Query: 919 KVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRF 1071
+V+ +T +Q SKTE+T+LRRTLQGLEIELQSQLSMKA LE TLA+TE R+
Sbjct: 698 EVSTNTAMIQTSKTEITELRRTLQGLEIELQSQLSMKAGLESTLADTECRY 748
>ref|XP_548101.2| PREDICTED: similar to Keratin, type I cytoskeletal 16 (Cytokeratin
16) (K16) (CK 16) [Canis familiaris].
Length = 477
Score = 322 bits (826), Expect(2) = e-101
Identities = 159/203 (78%), Positives = 186/203 (91%)
Frame = +3
Query: 312 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLR 491
NEKLTMQNLNDRLASYL+KVRALE+AN +LEVKIRDWYQ+Q P A+DYS YFKTIEDLR
Sbjct: 117 NEKLTMQNLNDRLASYLDKVRALEEANTELEVKIRDWYQRQRPSEAKDYSPYFKTIEDLR 176
Query: 492 DKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLART 671
+KI+ ATIEN++ +LQIDNARLAADDFRTK+E E LR SVEADINGLRRVLDELTL+RT
Sbjct: 177 NKIITATIENAQPILQIDNARLAADDFRTKYEHELTLRQSVEADINGLRRVLDELTLSRT 236
Query: 672 DLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEV 851
DLE+QIEGLKEELAYL+KNHEEE+ AL+GQ GG VSVE+D+APG+DL++IL++MR QYE
Sbjct: 237 DLEMQIEGLKEELAYLRKNHEEEMLALRGQTGGDVSVEMDAAPGVDLSRILNEMRDQYEQ 296
Query: 852 MAEQNRKDAEAWFTSRTEELNRE 920
MAE+NR+DAEAWF S+TEELN+E
Sbjct: 297 MAEKNRRDAEAWFLSKTEELNKE 319
Score = 65.9 bits (159), Expect(2) = e-101
Identities = 33/51 (64%), Positives = 43/51 (84%)
Frame = +1
Query: 919 KVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRF 1071
+V ++E LQ ++EVT+LRRTLQGLEIELQSQLSMKA+LE +L ET+ R+
Sbjct: 319 EVVSNSELLQSGRSEVTELRRTLQGLEIELQSQLSMKASLESSLEETKGRY 369
>ref|XP_862344.1| PREDICTED: similar to keratin 13 isoform a isoform 5 [Canis
familiaris].
Length = 692
Score = 296 bits (759), Expect(2) = 2e-95
Identities = 145/204 (71%), Positives = 176/204 (86%), Gaps = 1/204 (0%)
Frame = +3
Query: 312 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPG-PARDYSHYFKTIEDL 488
NEK+TMQNLNDRLASYL+KVRALE+AN +LEVKIRDW+ KQ P P RDYS Y+KTIE+L
Sbjct: 380 NEKITMQNLNDRLASYLDKVRALEEANTELEVKIRDWHLKQSPSSPERDYSPYYKTIEEL 439
Query: 489 RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 668
RDKIL ATI+N++++L+IDNARLAADDFR K+E E LR SVEADINGLRRVLDELTL++
Sbjct: 440 RDKILAATIDNNRVILEIDNARLAADDFRLKYENELTLRQSVEADINGLRRVLDELTLSK 499
Query: 669 TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 848
TDLE+QIE L EELAYLKKNHEEE+ Q+ GQV+VE+D+ PGIDL ++L++MR QYE
Sbjct: 500 TDLEMQIESLNEELAYLKKNHEEEMKEFSNQMVGQVNVEMDATPGIDLTRVLAEMREQYE 559
Query: 849 VMAEQNRKDAEAWFTSRTEELNRE 920
MAE+NR+DAE WF S++ ELN+E
Sbjct: 560 AMAEKNRRDAEEWFHSKSAELNKE 583
Score = 72.0 bits (175), Expect(2) = 2e-95
Identities = 36/51 (70%), Positives = 44/51 (86%)
Frame = +1
Query: 919 KVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRF 1071
+V+ +T +Q SKTE+T+LRRTLQGLEIELQSQLSMKA LE TLA+TE R+
Sbjct: 583 EVSTNTAMIQTSKTEITELRRTLQGLEIELQSQLSMKAGLESTLADTECRY 633
Score = 273 bits (697), Expect(3) = 1e-90
Identities = 133/184 (72%), Positives = 156/184 (84%), Gaps = 1/184 (0%)
Frame = +3
Query: 372 RALEQANGDLEVKIRDWYQKQGPG-PARDYSHYFKTIEDLRDKILGATIENSKIVLQIDN 548
R ANGDLEVKIRDWYQKQ P P RDYS YFKTIE+LRDKIL ATI+NS+++L+IDN
Sbjct: 7 RTSTTANGDLEVKIRDWYQKQSPSSPERDYSPYFKTIEELRDKILAATIDNSRVILEIDN 66
Query: 549 ARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLARTDLELQIEGLKEELAYLKKN 728
ARLAADDFR K+E E LR VEADINGLRRVLDELTLA+ DLE+QIEGL EELAYLKKN
Sbjct: 67 ARLAADDFRLKYENELTLRQGVEADINGLRRVLDELTLAKADLEMQIEGLNEELAYLKKN 126
Query: 729 HEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEVMAEQNRKDAEAWFTSRTEE 908
HEEE+ Q+ GQV+VE+D+APG+DL ++L++MR QYE MAE+NR+DAEAWF S+TEE
Sbjct: 127 HEEEMKEFSSQLAGQVNVEMDAAPGVDLTRVLAEMREQYEAMAEKNRRDAEAWFFSKTEE 186
Query: 909 LNRE 920
LN+E
Sbjct: 187 LNKE 190
Score = 76.6 bits (187), Expect(3) = 1e-90
Identities = 38/51 (74%), Positives = 45/51 (88%)
Frame = +1
Query: 919 KVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRF 1071
+VA +TE +Q SKTE+TDLRRT+QGLEIELQSQLSMKA LE +LAETE R+
Sbjct: 190 EVASNTEMIQTSKTEITDLRRTMQGLEIELQSQLSMKAGLESSLAETECRY 240
Score = 24.6 bits (52), Expect(3) = 1e-90
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +1
Query: 316 RSSPCRTSTTA 348
R SPCRTSTTA
Sbjct: 2 RRSPCRTSTTA 12
>ref|XP_548106.2| PREDICTED: similar to keratin 13 isoform a isoform 1 [Canis
familiaris].
Length = 407
Score = 296 bits (759), Expect(2) = 2e-95
Identities = 145/204 (71%), Positives = 176/204 (86%), Gaps = 1/204 (0%)
Frame = +3
Query: 312 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPG-PARDYSHYFKTIEDL 488
NEK+TMQNLNDRLASYL+KVRALE+AN +LEVKIRDW+ KQ P P RDYS Y+KTIE+L
Sbjct: 95 NEKITMQNLNDRLASYLDKVRALEEANTELEVKIRDWHLKQSPSSPERDYSPYYKTIEEL 154
Query: 489 RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 668
RDKIL ATI+N++++L+IDNARLAADDFR K+E E LR SVEADINGLRRVLDELTL++
Sbjct: 155 RDKILAATIDNNRVILEIDNARLAADDFRLKYENELTLRQSVEADINGLRRVLDELTLSK 214
Query: 669 TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 848
TDLE+QIE L EELAYLKKNHEEE+ Q+ GQV+VE+D+ PGIDL ++L++MR QYE
Sbjct: 215 TDLEMQIESLNEELAYLKKNHEEEMKEFSNQMVGQVNVEMDATPGIDLTRVLAEMREQYE 274
Query: 849 VMAEQNRKDAEAWFTSRTEELNRE 920
MAE+NR+DAE WF S++ ELN+E
Sbjct: 275 AMAEKNRRDAEEWFHSKSAELNKE 298
Score = 72.0 bits (175), Expect(2) = 2e-95
Identities = 36/51 (70%), Positives = 44/51 (86%)
Frame = +1
Query: 919 KVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRF 1071
+V+ +T +Q SKTE+T+LRRTLQGLEIELQSQLSMKA LE TLA+TE R+
Sbjct: 298 EVSTNTAMIQTSKTEITELRRTLQGLEIELQSQLSMKAGLESTLADTECRY 348
>ref|XP_850765.1| PREDICTED: similar to keratin 13 isoform a isoform 2 [Canis
familiaris].
Length = 404
Score = 295 bits (755), Expect(2) = 6e-95
Identities = 144/204 (70%), Positives = 175/204 (85%), Gaps = 1/204 (0%)
Frame = +3
Query: 312 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPG-PARDYSHYFKTIEDL 488
NEK+TMQNLNDRLASYL+KVRALE+AN +LEVKIRDW+ KQ P P RDYS Y+KTIE+L
Sbjct: 63 NEKITMQNLNDRLASYLDKVRALEEANTELEVKIRDWHLKQSPSSPERDYSPYYKTIEEL 122
Query: 489 RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 668
RDKIL ATI+N++++L+IDNARLAADDFR K+E E LR SVEADINGLRRVLDELTL++
Sbjct: 123 RDKILAATIDNNRVILEIDNARLAADDFRLKYENELTLRQSVEADINGLRRVLDELTLSK 182
Query: 669 TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 848
TDLE+QIE L EELAYLKKNHEEE+ Q+ GQV+VE+D+ PGIDL ++L++MR QYE
Sbjct: 183 TDLEMQIESLNEELAYLKKNHEEEMKEFSNQMVGQVNVEMDATPGIDLTRVLAEMREQYE 242
Query: 849 VMAEQNRKDAEAWFTSRTEELNRE 920
MAE+NR+DAE WF S+ +LN+E
Sbjct: 243 AMAEKNRRDAEEWFHSKVPQLNKE 266
Score = 72.0 bits (175), Expect(2) = 6e-95
Identities = 36/51 (70%), Positives = 44/51 (86%)
Frame = +1
Query: 919 KVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRF 1071
+V+ +T +Q SKTE+T+LRRTLQGLEIELQSQLSMKA LE TLA+TE R+
Sbjct: 266 EVSTNTAMIQTSKTEITELRRTLQGLEIELQSQLSMKAGLESTLADTECRY 316
>ref|XP_861773.1| PREDICTED: similar to type I keratin KA17 isoform 2 [Canis
familiaris].
Length = 413
Score = 287 bits (735), Expect(2) = 4e-91
Identities = 143/202 (70%), Positives = 171/202 (84%)
Frame = +3
Query: 315 EKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLRD 494
EK TMQNLNDRLASYL+KVRALE+AN +LEVKIRDWYQKQ PGPARDYSHY++TIEDL++
Sbjct: 84 EKATMQNLNDRLASYLDKVRALEEANTELEVKIRDWYQKQAPGPARDYSHYYQTIEDLKN 143
Query: 495 KILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLARTD 674
KIL AT++N+ I+LQIDNARLAADDFRTK VLDELTL+R D
Sbjct: 144 KILTATVDNANILLQIDNARLAADDFRTK--------------------VLDELTLSRAD 183
Query: 675 LELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEVM 854
LE+QIE LKEELAYL+KNHEEE++AL+GQVGG+++VE+D+APG+DL++ILS+MR QYE M
Sbjct: 184 LEMQIENLKEELAYLRKNHEEEMNALRGQVGGEINVEMDAAPGVDLSRILSEMRDQYEKM 243
Query: 855 AEQNRKDAEAWFTSRTEELNRE 920
AE+NRKDAE WF S+TEELNRE
Sbjct: 244 AEKNRKDAEDWFFSKTEELNRE 265
Score = 67.0 bits (162), Expect(2) = 4e-91
Identities = 33/51 (64%), Positives = 45/51 (88%)
Frame = +1
Query: 919 KVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRF 1071
+VA ++E +Q K+E+++LRRT+Q LEIELQSQLSMKA+LEG+LAETE R+
Sbjct: 265 EVATNSELVQSGKSEISELRRTVQALEIELQSQLSMKASLEGSLAETENRY 315
>ref|NP_001013443.1| keratin, type I cytoskeletal 10 [Canis lupus familiaris].
Length = 568
Score = 270 bits (690), Expect(2) = 1e-85
Identities = 135/206 (65%), Positives = 170/206 (82%), Gaps = 3/206 (1%)
Frame = +3
Query: 312 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPAR---DYSHYFKTIE 482
NEK+TMQNLNDRLASYL+KVRALE++N +LE KI++WY+K G R DYS Y++TIE
Sbjct: 135 NEKVTMQNLNDRLASYLDKVRALEESNYELEGKIKEWYEKHGNSSQRAPRDYSKYYQTIE 194
Query: 483 DLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTL 662
DL+++IL T +N+ I+LQIDNARLAADDFR K+E E ALR SVEADINGLRRVLDELTL
Sbjct: 195 DLKNQILNLTTDNANILLQIDNARLAADDFRLKYENEVALRQSVEADINGLRRVLDELTL 254
Query: 663 ARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQ 842
+ DLE+QIE L EELAYLKKNHEEE+ L+ G V+VE+++APG+DL ++L++MR+Q
Sbjct: 255 TKADLEMQIESLTEELAYLKKNHEEEMRDLQNVSTGDVNVEMNAAPGVDLTELLNNMRNQ 314
Query: 843 YEVMAEQNRKDAEAWFTSRTEELNRE 920
YE +AEQNRKDAEAWF +++EL E
Sbjct: 315 YEQLAEQNRKDAEAWFNEKSKELTTE 340
Score = 65.9 bits (159), Expect(2) = 1e-85
Identities = 31/53 (58%), Positives = 44/53 (83%)
Frame = +1
Query: 913 TGKVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRF 1071
T ++ + EQ+ K+E+T+LRRT+QGLEIELQSQL++K +LEG+LAETE R+
Sbjct: 338 TTEINSNIEQMSSHKSEITELRRTVQGLEIELQSQLALKQSLEGSLAETEGRY 390
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,049,283
Number of extensions: 1065743
Number of successful extensions: 6081
Number of sequences better than 1.0e-05: 114
Number of HSP's gapped: 5845
Number of HSP's successfully gapped: 164
Length of query: 359
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 255
Effective length of database: 15,407,560
Effective search space: 3928927800
Effective search space used: 3928927800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001866
(1078 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002267.2| keratin, type I cytoskeletal 19 [Homo sapiens]. 396 e-131
Alignment gi|NP_000413.1| keratin, type I cytoskeletal 17 [Homo sapiens]. 332 e-104
Alignment gi|NP_005548.2| keratin, type I cytoskeletal 16 [Homo sapiens]. 319 e-100
Alignment gi|NP_000517.2| keratin, type I cytoskeletal 14 [Homo sapiens]. 322 e-100
Alignment gi|NP_002266.2| keratin, type I cytoskeletal 15 [Homo sapiens]. 310 e-100
Alignment gi|NP_705694.2| keratin, type I cytoskeletal 13 isoform a [Homo... 301 9e-97
Alignment gi|NP_002265.2| keratin, type I cytoskeletal 13 isoform b [Homo... 301 9e-97
Alignment gi|NP_000214.1| keratin, type I cytoskeletal 12 [Homo sapiens]. 272 1e-85
Alignment gi|NP_000412.3| keratin, type I cytoskeletal 10 [Homo sapiens]. 275 5e-85
Alignment gi|NP_061889.2| keratin, type I cytoskeletal 24 [Homo sapiens]. 263 2e-81
>ref|NP_002267.2| keratin, type I cytoskeletal 19 [Homo sapiens].
Length = 400
Score = 396 bits (1017), Expect(2) = e-131
Identities = 210/271 (77%), Positives = 219/271 (80%)
Frame = +3
Query: 108 FGGLGGGSVRFSAGGAFRAPSIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 287
FGGLGGGSVRF G AFRAPSIH
Sbjct: 15 FGGLGGGSVRFGPGVAFRAPSIHGGSGGRGVSVSSARFVSSSSSGAYGGGYGGVLTASDG 74
Query: 288 XXXXXXXXNEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHY 467
NEKLTMQNLNDRLASYL+KVRALE ANG+LEVKIRDWYQKQGPGP+RDYSHY
Sbjct: 75 LLAG----NEKLTMQNLNDRLASYLDKVRALEAANGELEVKIRDWYQKQGPGPSRDYSHY 130
Query: 468 FKTIEDLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVL 647
+ TI+DLRDKILGATIENS+IVLQIDNARLAADDFRTKFETEQALR+SVEADINGLRRVL
Sbjct: 131 YTTIQDLRDKILGATIENSRIVLQIDNARLAADDFRTKFETEQALRMSVEADINGLRRVL 190
Query: 648 DELTLARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILS 827
DELTLARTDLE+QIEGLKEELAYLKKNHEEEIS L+GQVGGQVSVEVDSAPG DLAKILS
Sbjct: 191 DELTLARTDLEMQIEGLKEELAYLKKNHEEEISTLRGQVGGQVSVEVDSAPGTDLAKILS 250
Query: 828 DMRSQYEVMAEQNRKDAEAWFTSRTEELNRE 920
DMRSQYEVMAEQNRKDAEAWFTSRTEELNRE
Sbjct: 251 DMRSQYEVMAEQNRKDAEAWFTSRTEELNRE 281
Score = 92.0 bits (227), Expect(2) = e-131
Identities = 47/53 (88%), Positives = 51/53 (96%)
Frame = +1
Query: 919 KVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRFGA 1077
+VAGHTEQLQ+S++EVTDLRRTLQGLEIELQSQLSMKAALE TLAETE RFGA
Sbjct: 281 EVAGHTEQLQMSRSEVTDLRRTLQGLEIELQSQLSMKAALEDTLAETEARFGA 333
>ref|NP_000413.1| keratin, type I cytoskeletal 17 [Homo sapiens].
Length = 432
Score = 332 bits (850), Expect(2) = e-104
Identities = 161/202 (79%), Positives = 190/202 (94%)
Frame = +3
Query: 315 EKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLRD 494
EK TMQNLNDRLASYL+KVRALE+AN +LEVKIRDWYQ+Q PGPARDYS Y++TIE+L++
Sbjct: 84 EKATMQNLNDRLASYLDKVRALEEANTELEVKIRDWYQRQAPGPARDYSQYYRTIEELQN 143
Query: 495 KILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLARTD 674
KIL AT++N+ I+LQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR D
Sbjct: 144 KILTATVDNANILLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLARAD 203
Query: 675 LELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEVM 854
LE+QIE LKEELAYLKKNHEEE++AL+GQVGG+++VE+D+APG+DL++IL++MR QYE M
Sbjct: 204 LEMQIENLKEELAYLKKNHEEEMNALRGQVGGEINVEMDAAPGVDLSRILNEMRDQYEKM 263
Query: 855 AEQNRKDAEAWFTSRTEELNRE 920
AE+NRKDAE WF S+TEELNRE
Sbjct: 264 AEKNRKDAEDWFFSKTEELNRE 285
Score = 67.0 bits (162), Expect(2) = e-104
Identities = 33/51 (64%), Positives = 44/51 (86%)
Frame = +1
Query: 919 KVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRF 1071
+VA ++E +Q K+E+++LRRT+Q LEIELQSQLSMKA+LEG LAETE R+
Sbjct: 285 EVATNSELVQSGKSEISELRRTMQALEIELQSQLSMKASLEGNLAETENRY 335
>ref|NP_005548.2| keratin, type I cytoskeletal 16 [Homo sapiens].
Length = 473
Score = 319 bits (817), Expect(2) = e-100
Identities = 155/203 (76%), Positives = 185/203 (91%)
Frame = +3
Query: 312 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLR 491
+EK+TMQNLNDRLASYL+KVRALE+AN DLEVKIRDWYQ+Q P +DYS YFKTIEDLR
Sbjct: 116 SEKVTMQNLNDRLASYLDKVRALEEANADLEVKIRDWYQRQRPSEIKDYSPYFKTIEDLR 175
Query: 492 DKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLART 671
+KI+ ATIEN++ +LQIDNARLAADDFRTK+E E ALR +VEAD+NGLRRVLDELTLART
Sbjct: 176 NKIIAATIENAQPILQIDNARLAADDFRTKYEHELALRQTVEADVNGLRRVLDELTLART 235
Query: 672 DLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEV 851
DLE+QIEGLKEELAYL+KNHEEE+ AL+GQ GG V+VE+D+APG+DL++IL++MR QYE
Sbjct: 236 DLEMQIEGLKEELAYLRKNHEEEMLALRGQTGGDVNVEMDAAPGVDLSRILNEMRDQYEQ 295
Query: 852 MAEQNRKDAEAWFTSRTEELNRE 920
MAE+NR+DAE WF S+TEELN+E
Sbjct: 296 MAEKNRRDAETWFLSKTEELNKE 318
Score = 65.9 bits (159), Expect(2) = e-100
Identities = 33/51 (64%), Positives = 44/51 (86%)
Frame = +1
Query: 919 KVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRF 1071
+VA ++E +Q S++EVT+LRR LQGLEIELQSQLSMKA+LE +L ET+ R+
Sbjct: 318 EVASNSELVQSSRSEVTELRRVLQGLEIELQSQLSMKASLENSLEETKGRY 368
>ref|NP_000517.2| keratin, type I cytoskeletal 14 [Homo sapiens].
Length = 472
Score = 322 bits (825), Expect(2) = e-100
Identities = 157/203 (77%), Positives = 186/203 (91%)
Frame = +3
Query: 312 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLR 491
+EK+TMQNLNDRLASYL+KVRALE+AN DLEVKIRDWYQ+Q P +DYS YFKTIEDLR
Sbjct: 114 SEKVTMQNLNDRLASYLDKVRALEEANADLEVKIRDWYQRQRPAEIKDYSPYFKTIEDLR 173
Query: 492 DKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLART 671
+KIL AT++N+ ++LQIDNARLAADDFRTK+ETE LR+SVEADINGLRRVLDELTLAR
Sbjct: 174 NKILTATVDNANVLLQIDNARLAADDFRTKYETELNLRMSVEADINGLRRVLDELTLARA 233
Query: 672 DLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEV 851
DLE+QIE LKEELAYLKKNHEEE++AL+GQVGG V+VE+D+APG+DL++IL++MR QYE
Sbjct: 234 DLEMQIESLKEELAYLKKNHEEEMNALRGQVGGDVNVEMDAAPGVDLSRILNEMRDQYEK 293
Query: 852 MAEQNRKDAEAWFTSRTEELNRE 920
MAE+NRKDAE WF ++TEELNRE
Sbjct: 294 MAEKNRKDAEEWFFTKTEELNRE 316
Score = 61.6 bits (148), Expect(2) = e-100
Identities = 30/51 (58%), Positives = 43/51 (84%)
Frame = +1
Query: 919 KVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRF 1071
+VA ++E +Q K+E+++LRRT+Q LEIELQSQLSMKA+LE +L ET+ R+
Sbjct: 316 EVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRY 366
>ref|NP_002266.2| keratin, type I cytoskeletal 15 [Homo sapiens].
Length = 456
Score = 310 bits (793), Expect(2) = e-100
Identities = 151/204 (74%), Positives = 177/204 (86%), Gaps = 1/204 (0%)
Frame = +3
Query: 312 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGP-GPARDYSHYFKTIEDL 488
NEK+TMQNLNDRLASYL+KVRALE+AN DLEVKI DWYQKQ P P DYS YFKTIE+L
Sbjct: 104 NEKITMQNLNDRLASYLDKVRALEEANADLEVKIHDWYQKQTPTSPECDYSQYFKTIEEL 163
Query: 489 RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 668
RDKI+ TI+NS+++L+IDNARLAADDFR K+E E ALR VEADINGLRRVLDELTLAR
Sbjct: 164 RDKIMATTIDNSRVILEIDNARLAADDFRLKYENELALRQGVEADINGLRRVLDELTLAR 223
Query: 669 TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 848
TDLE+QIEGL EELAYLKKNHEEE+ Q+ GQV+VE+D+APG+DL ++L++MR QYE
Sbjct: 224 TDLEMQIEGLNEELAYLKKNHEEEMKEFSSQLAGQVNVEMDAAPGVDLTRVLAEMREQYE 283
Query: 849 VMAEQNRKDAEAWFTSRTEELNRE 920
MAE+NR+D EAWF S+TEELN+E
Sbjct: 284 AMAEKNRRDVEAWFFSKTEELNKE 307
Score = 73.6 bits (179), Expect(2) = e-100
Identities = 37/51 (72%), Positives = 44/51 (86%)
Frame = +1
Query: 919 KVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRF 1071
+VA +TE +Q SKTE+TDLRRT+Q LEIELQSQLSMKA LE +LAETE R+
Sbjct: 307 EVASNTEMIQTSKTEITDLRRTMQELEIELQSQLSMKAGLENSLAETECRY 357
>ref|NP_705694.2| keratin, type I cytoskeletal 13 isoform a [Homo sapiens].
Length = 458
Score = 301 bits (771), Expect(2) = 9e-97
Identities = 148/204 (72%), Positives = 177/204 (86%), Gaps = 1/204 (0%)
Frame = +3
Query: 312 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPG-PARDYSHYFKTIEDL 488
NEK+TMQNLNDRLASYLEKVRALE+AN DLEVKIRDW+ KQ P P RDYS Y+KTIE+L
Sbjct: 103 NEKITMQNLNDRLASYLEKVRALEEANADLEVKIRDWHLKQSPASPERDYSPYYKTIEEL 162
Query: 489 RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 668
RDKIL ATIEN++++L+IDNARLAADDFR K+E E ALR SVEADINGLRRVLDELTL++
Sbjct: 163 RDKILTATIENNRVILEIDNARLAADDFRLKYENELALRQSVEADINGLRRVLDELTLSK 222
Query: 669 TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 848
TDLE+QIE L EELAY+KKNHEEE+ QV GQV+VE+D+ PGIDL ++L++MR QYE
Sbjct: 223 TDLEMQIESLNEELAYMKKNHEEEMKEFSNQVVGQVNVEMDATPGIDLTRVLAEMREQYE 282
Query: 849 VMAEQNRKDAEAWFTSRTEELNRE 920
MAE+NR+DAE WF +++ ELN+E
Sbjct: 283 AMAERNRRDAEEWFHAKSAELNKE 306
Score = 72.0 bits (175), Expect(2) = 9e-97
Identities = 36/51 (70%), Positives = 44/51 (86%)
Frame = +1
Query: 919 KVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRF 1071
+V+ +T +Q SKTE+T+LRRTLQGLEIELQSQLSMKA LE T+AETE R+
Sbjct: 306 EVSTNTAMIQTSKTEITELRRTLQGLEIELQSQLSMKAGLENTVAETECRY 356
>ref|NP_002265.2| keratin, type I cytoskeletal 13 isoform b [Homo sapiens].
Length = 420
Score = 301 bits (771), Expect(2) = 9e-97
Identities = 148/204 (72%), Positives = 177/204 (86%), Gaps = 1/204 (0%)
Frame = +3
Query: 312 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPG-PARDYSHYFKTIEDL 488
NEK+TMQNLNDRLASYLEKVRALE+AN DLEVKIRDW+ KQ P P RDYS Y+KTIE+L
Sbjct: 103 NEKITMQNLNDRLASYLEKVRALEEANADLEVKIRDWHLKQSPASPERDYSPYYKTIEEL 162
Query: 489 RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 668
RDKIL ATIEN++++L+IDNARLAADDFR K+E E ALR SVEADINGLRRVLDELTL++
Sbjct: 163 RDKILTATIENNRVILEIDNARLAADDFRLKYENELALRQSVEADINGLRRVLDELTLSK 222
Query: 669 TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 848
TDLE+QIE L EELAY+KKNHEEE+ QV GQV+VE+D+ PGIDL ++L++MR QYE
Sbjct: 223 TDLEMQIESLNEELAYMKKNHEEEMKEFSNQVVGQVNVEMDATPGIDLTRVLAEMREQYE 282
Query: 849 VMAEQNRKDAEAWFTSRTEELNRE 920
MAE+NR+DAE WF +++ ELN+E
Sbjct: 283 AMAERNRRDAEEWFHAKSAELNKE 306
Score = 72.0 bits (175), Expect(2) = 9e-97
Identities = 36/51 (70%), Positives = 44/51 (86%)
Frame = +1
Query: 919 KVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRF 1071
+V+ +T +Q SKTE+T+LRRTLQGLEIELQSQLSMKA LE T+AETE R+
Sbjct: 306 EVSTNTAMIQTSKTEITELRRTLQGLEIELQSQLSMKAGLENTVAETECRY 356
>ref|NP_000214.1| keratin, type I cytoskeletal 12 [Homo sapiens].
Length = 494
Score = 272 bits (696), Expect(2) = 1e-85
Identities = 136/207 (65%), Positives = 171/207 (82%), Gaps = 4/207 (1%)
Frame = +3
Query: 312 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPA----RDYSHYFKTI 479
+EK TMQNLNDRLASYL+KVRALE+AN +LE KIR+WY+ +G G A DYS Y+ I
Sbjct: 124 SEKETMQNLNDRLASYLDKVRALEEANTELENKIREWYETRGTGTADASQSDYSKYYPLI 183
Query: 480 EDLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELT 659
EDLR+KI+ A+I N++++LQIDNARLAA+DFR K+E E ALR VEADINGLRRVLDELT
Sbjct: 184 EDLRNKIISASIGNAQLLLQIDNARLAAEDFRMKYENELALRQGVEADINGLRRVLDELT 243
Query: 660 LARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRS 839
L RTDLE+QIE L EELAY+KKNHE+E+ + + G+VSVE+D+APG+DL ++L+DMR+
Sbjct: 244 LTRTDLEMQIESLNEELAYMKKNHEDELQSFRVGGPGEVSVEMDAAPGVDLTRLLNDMRA 303
Query: 840 QYEVMAEQNRKDAEAWFTSRTEELNRE 920
QYE +AEQNRKDAEAWF ++ EL +E
Sbjct: 304 QYETIAEQNRKDAEAWFIEKSGELRKE 330
Score = 63.5 bits (153), Expect(2) = 1e-85
Identities = 32/48 (66%), Positives = 40/48 (83%)
Frame = +1
Query: 919 KVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETE 1062
+++ +TEQLQ SK+EVTDLRR Q LEIELQSQL+MK +LE +LAE E
Sbjct: 330 EISTNTEQLQSSKSEVTDLRRAFQNLEIELQSQLAMKKSLEDSLAEAE 377
>ref|NP_000412.3| keratin, type I cytoskeletal 10 [Homo sapiens].
Length = 584
Score = 275 bits (703), Expect(2) = 5e-85
Identities = 137/206 (66%), Positives = 171/206 (83%), Gaps = 3/206 (1%)
Frame = +3
Query: 312 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQG---PGPARDYSHYFKTIE 482
NEK+TMQNLNDRLASYL+KVRALE++N +LE KI++WY+K G G RDYS Y+KTI+
Sbjct: 145 NEKVTMQNLNDRLASYLDKVRALEESNYELEGKIKEWYEKHGNSHQGEPRDYSKYYKTID 204
Query: 483 DLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTL 662
DL+++IL T +N+ I+LQIDNARLAADDFR K+E E ALR SVEADINGLRRVLDELTL
Sbjct: 205 DLKNQILNLTTDNANILLQIDNARLAADDFRLKYENEVALRQSVEADINGLRRVLDELTL 264
Query: 663 ARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQ 842
+ DLE+QIE L EELAYLKKNHEEE+ L+ G V+VE+++APG+DL ++L++MRSQ
Sbjct: 265 TKADLEMQIESLTEELAYLKKNHEEEMKDLRNVSTGDVNVEMNAAPGVDLTQLLNNMRSQ 324
Query: 843 YEVMAEQNRKDAEAWFTSRTEELNRE 920
YE +AEQNRKDAEAWF +++EL E
Sbjct: 325 YEQLAEQNRKDAEAWFNEKSKELTTE 350
Score = 58.9 bits (141), Expect(2) = 5e-85
Identities = 28/53 (52%), Positives = 41/53 (77%)
Frame = +1
Query: 913 TGKVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRF 1071
T ++ + EQ+ K+E+T+LRR +Q LEIELQSQL++K +LE +LAETE R+
Sbjct: 348 TTEIDNNIEQISSYKSEITELRRNVQALEIELQSQLALKQSLEASLAETEGRY 400
>ref|NP_061889.2| keratin, type I cytoskeletal 24 [Homo sapiens].
Length = 525
Score = 263 bits (673), Expect(2) = 2e-81
Identities = 132/220 (60%), Positives = 170/220 (77%), Gaps = 5/220 (2%)
Frame = +3
Query: 315 EKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPA-----RDYSHYFKTI 479
EK TMQNLNDRLA+YL+KVRALE+AN DLE KI++WY K GPG RDYS Y+ I
Sbjct: 140 EKQTMQNLNDRLANYLDKVRALEEANTDLENKIKEWYDKYGPGSGDGGSGRDYSKYYSII 199
Query: 480 EDLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELT 659
EDLR++I+ AT+EN+ I+L IDNARLAADDFR K+E E LR SVEADINGLR+VLD+LT
Sbjct: 200 EDLRNQIIAATVENAGIILHIDNARLAADDFRLKYENELCLRQSVEADINGLRKVLDDLT 259
Query: 660 LARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRS 839
+ R+DLE+QIE EELAYL+KNHEEE+ ++G GG+V+VE+++APG DL K+L+DMR+
Sbjct: 260 MTRSDLEMQIESFTEELAYLRKNHEEEMKNMQGSSGGEVTVEMNAAPGTDLTKLLNDMRA 319
Query: 840 QYEVMAEQNRKDAEAWFTSRTEELNREGRWPHGAAADQQD 959
QYE +AEQNR++AE F ++ L + GAA ++
Sbjct: 320 QYEELAEQNRREAEERFNKQSASLQAQISTDAGAATSAKN 359
Score = 58.5 bits (140), Expect(2) = 2e-81
Identities = 28/42 (66%), Positives = 37/42 (88%)
Frame = +1
Query: 952 SKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRFGA 1077
+K E+T+L+RTLQ LEIELQSQL+MK++LEGTLA+TE + A
Sbjct: 357 AKNEITELKRTLQALEIELQSQLAMKSSLEGTLADTEAGYVA 398
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,872,105
Number of extensions: 1015275
Number of successful extensions: 5500
Number of sequences better than 1.0e-05: 77
Number of HSP's gapped: 5344
Number of HSP's successfully gapped: 109
Length of query: 359
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 255
Effective length of database: 14,868,908
Effective search space: 3791571540
Effective search space used: 3791571540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001866
(1078 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032497.1| keratin, type I cytoskeletal 19 [Mus musculus]. 375 e-124
Alignment gi|NP_997648.2| keratin, type I cytoskeletal 42 [Mus musculus]. 329 e-106
Alignment gi|NP_034793.1| keratin, type I cytoskeletal 17 [Mus musculus]. 333 e-105
Alignment gi|NP_032495.2| keratin, type I cytoskeletal 15 [Mus musculus]. 310 e-100
Alignment gi|NP_058654.1| keratin, type I cytoskeletal 14 [Mus musculus]. 321 1e-99
Alignment gi|NP_034792.1| keratin, type I cytoskeletal 13 [Mus musculus]. 292 7e-95
Alignment gi|NP_032496.1| keratin, type I cytoskeletal 16 [Mus musculus]. 299 1e-92
Alignment gi|NP_034791.2| keratin, type I cytoskeletal 12 [Mus musculus]. 263 3e-84
Alignment gi|NP_034790.2| keratin, type I cytoskeletal 10 [Mus musculus]. 265 2e-83
Alignment gi|NP_001167570.1| keratin, type I cuticular Ha6 [Mus musculus]. 264 6e-82
>ref|NP_032497.1| keratin, type I cytoskeletal 19 [Mus musculus].
Length = 403
Score = 375 bits (963), Expect(2) = e-124
Identities = 197/271 (72%), Positives = 214/271 (78%)
Frame = +3
Query: 108 FGGLGGGSVRFSAGGAFRAPSIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 287
FGG GGGSVR +GG FRAPSIH
Sbjct: 15 FGGTGGGSVRIGSGGVFRAPSIHGGSGGRGVSVSSTRFVTSSSGSYGGVRGGSFSGTLAV 74
Query: 288 XXXXXXXXNEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHY 467
NEK+TMQNLNDRLASYL+KVRALEQANG+LEVKIRDWYQKQGPGP+RDY+HY
Sbjct: 75 SDGLLSG-NEKITMQNLNDRLASYLDKVRALEQANGELEVKIRDWYQKQGPGPSRDYNHY 133
Query: 468 FKTIEDLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVL 647
FKTIEDLRDKILGATI+NSKIVLQIDNARLAADDFRTKFETE ALRLSVEADINGLRRVL
Sbjct: 134 FKTIEDLRDKILGATIDNSKIVLQIDNARLAADDFRTKFETEHALRLSVEADINGLRRVL 193
Query: 648 DELTLARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILS 827
DELTLARTDLE+QIE LKEELAYLKKNHEEEI+AL+ QVGGQVSVEVDS PG+DLAKILS
Sbjct: 194 DELTLARTDLEMQIESLKEELAYLKKNHEEEITALRSQVGGQVSVEVDSTPGVDLAKILS 253
Query: 828 DMRSQYEVMAEQNRKDAEAWFTSRTEELNRE 920
+MRSQYE+MAE+NRKDAEA + +R EELN +
Sbjct: 254 EMRSQYEIMAEKNRKDAEATYLARIEELNTQ 284
Score = 90.1 bits (222), Expect(2) = e-124
Identities = 46/52 (88%), Positives = 50/52 (96%)
Frame = +1
Query: 919 KVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRFG 1074
+VA H+EQ+QISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETE R+G
Sbjct: 284 QVAVHSEQIQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEARYG 335
>ref|NP_997648.2| keratin, type I cytoskeletal 42 [Mus musculus].
Length = 452
Score = 329 bits (844), Expect(2) = e-106
Identities = 161/203 (79%), Positives = 189/203 (93%)
Frame = +3
Query: 312 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLR 491
+EK TMQNLNDRLA+YL++VRALE+AN DLEVKIR+WY+KQGPGPARDYS YFKTIEDLR
Sbjct: 93 SEKETMQNLNDRLATYLDRVRALEEANADLEVKIREWYKKQGPGPARDYSPYFKTIEDLR 152
Query: 492 DKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLART 671
+KIL ATI+N+ IVLQIDNARLAADDFRTK+ETE LR+SVEADINGLRRVLDELTLAR
Sbjct: 153 NKILAATIDNASIVLQIDNARLAADDFRTKYETELNLRMSVEADINGLRRVLDELTLARA 212
Query: 672 DLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEV 851
DLE+QIE LKEELAYL+KNHEEE++AL+GQVGG V+VE+D+APG+DL++IL++MR QYE
Sbjct: 213 DLEMQIESLKEELAYLRKNHEEEMNALRGQVGGDVNVEMDAAPGVDLSRILNEMRDQYEK 272
Query: 852 MAEQNRKDAEAWFTSRTEELNRE 920
MAE+NRKDAE WF ++TEELNRE
Sbjct: 273 MAEKNRKDAEEWFFTKTEELNRE 295
Score = 73.9 bits (180), Expect(2) = e-106
Identities = 37/53 (69%), Positives = 47/53 (88%)
Frame = +1
Query: 919 KVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRFGA 1077
+VA +TE LQ S+TE+T+LRR++Q LEIELQSQLSMKA+LE +LAETE R+GA
Sbjct: 295 EVATNTEALQSSRTEITELRRSVQNLEIELQSQLSMKASLENSLAETEARYGA 347
>ref|NP_034793.1| keratin, type I cytoskeletal 17 [Mus musculus].
Length = 433
Score = 333 bits (853), Expect(2) = e-105
Identities = 163/202 (80%), Positives = 189/202 (93%)
Frame = +3
Query: 315 EKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLRD 494
EK TMQNLNDRLASYL+KVRALE+AN +LEVKIRDWYQKQ PGPARDYS Y+ TIEDL++
Sbjct: 84 EKATMQNLNDRLASYLDKVRALEEANTELEVKIRDWYQKQAPGPARDYSAYYHTIEDLKN 143
Query: 495 KILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLARTD 674
KIL AT++N+ I+LQIDNARLAADDFRTKFETEQALR+SVEADINGLRRVLDELTLAR D
Sbjct: 144 KILVATVDNASILLQIDNARLAADDFRTKFETEQALRMSVEADINGLRRVLDELTLARAD 203
Query: 675 LELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEVM 854
LE+QIE LKEELAYLKKNHEEE++AL+GQVGG+++VE+D+APG+DL++ILS+MR QYE M
Sbjct: 204 LEMQIENLKEELAYLKKNHEEEMNALRGQVGGEINVEMDAAPGVDLSRILSEMRDQYEKM 263
Query: 855 AEQNRKDAEAWFTSRTEELNRE 920
AE+NRKDAE WF S+TEELNRE
Sbjct: 264 AEKNRKDAEDWFFSKTEELNRE 285
Score = 67.4 bits (163), Expect(2) = e-105
Identities = 33/51 (64%), Positives = 45/51 (88%)
Frame = +1
Query: 919 KVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRF 1071
+VA ++E +Q K+E+++LRRT+Q LEIELQSQLSMKA+LEG+LAETE R+
Sbjct: 285 EVATNSELVQSGKSEISELRRTMQALEIELQSQLSMKASLEGSLAETENRY 335
>ref|NP_032495.2| keratin, type I cytoskeletal 15 [Mus musculus].
Length = 456
Score = 310 bits (795), Expect(2) = e-100
Identities = 152/204 (74%), Positives = 179/204 (87%), Gaps = 1/204 (0%)
Frame = +3
Query: 312 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPG-PARDYSHYFKTIEDL 488
NEK+TMQNLNDRLASYL+KVRALEQAN +LEVKIRDWYQKQ P P RDYSHYFKT+E++
Sbjct: 97 NEKVTMQNLNDRLASYLDKVRALEQANTELEVKIRDWYQKQSPASPDRDYSHYFKTMEEI 156
Query: 489 RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 668
RDKIL ATI+NS++VL+IDNARLAADDFR K+E E LR VEADINGLRRVLDELTLAR
Sbjct: 157 RDKILAATIDNSRVVLEIDNARLAADDFRLKYENELTLRQGVEADINGLRRVLDELTLAR 216
Query: 669 TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 848
TDLE+QIE L EELAYLKKNHEEE+ Q+ GQV+VE+D+APG+DL ++L++MR QYE
Sbjct: 217 TDLEMQIEQLNEELAYLKKNHEEEMKEFSSQLAGQVNVEMDAAPGVDLTRMLAEMREQYE 276
Query: 849 VMAEQNRKDAEAWFTSRTEELNRE 920
+AE+NR+D EAWF S+TEELN+E
Sbjct: 277 AIAEKNRRDVEAWFFSKTEELNKE 300
Score = 75.5 bits (184), Expect(2) = e-100
Identities = 38/51 (74%), Positives = 44/51 (86%)
Frame = +1
Query: 919 KVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRF 1071
+VA +TE +Q SKTE+TDLRRTLQGLEIELQSQLSMKA LE +LAE E R+
Sbjct: 300 EVASNTEMIQTSKTEITDLRRTLQGLEIELQSQLSMKAGLENSLAEVECRY 350
>ref|NP_058654.1| keratin, type I cytoskeletal 14 [Mus musculus].
Length = 484
Score = 321 bits (823), Expect(2) = 1e-99
Identities = 155/203 (76%), Positives = 187/203 (92%)
Frame = +3
Query: 312 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLR 491
+EK+TMQNLNDRLA+YL+KVRALE+AN +LEVKIRDWYQ+Q P +DYS YFKTIEDL+
Sbjct: 120 SEKVTMQNLNDRLATYLDKVRALEEANTELEVKIRDWYQRQRPTEIKDYSPYFKTIEDLK 179
Query: 492 DKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLART 671
KIL AT++N+ ++LQIDNARLAADDFRTKFETEQ+LR+SVEADINGLRRVLDELTLAR
Sbjct: 180 SKILAATVDNANVLLQIDNARLAADDFRTKFETEQSLRMSVEADINGLRRVLDELTLARA 239
Query: 672 DLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEV 851
DLE+QIE LKEELAYLKKNHEEE+++++GQVGG V+VE+D+APG+DL++IL++MR QYE
Sbjct: 240 DLEMQIESLKEELAYLKKNHEEEMASMRGQVGGDVNVEMDAAPGVDLSRILNEMRDQYEK 299
Query: 852 MAEQNRKDAEAWFTSRTEELNRE 920
MAE+NRKDAE WF S+TEELNRE
Sbjct: 300 MAEKNRKDAEEWFFSKTEELNRE 322
Score = 61.2 bits (147), Expect(2) = 1e-99
Identities = 30/51 (58%), Positives = 42/51 (82%)
Frame = +1
Query: 919 KVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRF 1071
+VA ++E +Q K+E+++LRRT+Q LEIELQSQLSMKA+LE L ET+ R+
Sbjct: 322 EVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENNLEETKGRY 372
>ref|NP_034792.1| keratin, type I cytoskeletal 13 [Mus musculus].
Length = 437
Score = 292 bits (748), Expect(2) = 7e-95
Identities = 145/204 (71%), Positives = 173/204 (84%), Gaps = 1/204 (0%)
Frame = +3
Query: 312 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPG-PARDYSHYFKTIEDL 488
NEK+TMQNLNDRLASYL+KVRALE AN DLEVKIRDW+ KQ P P RDYS Y+KTIE+L
Sbjct: 95 NEKITMQNLNDRLASYLDKVRALEAANADLEVKIRDWHLKQSPASPERDYSAYYKTIEEL 154
Query: 489 RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 668
R KIL AT +N++I+L+IDNARLAADDFR K+E E LR SVEADINGLRRVLDELTLA+
Sbjct: 155 RIKILEATTDNNRIILEIDNARLAADDFRLKYENELTLRQSVEADINGLRRVLDELTLAK 214
Query: 669 TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 848
TDLE+QIE L EELAYLKKNHEEE+ QV GQV+VE+D+ PGIDL ++L++MR QYE
Sbjct: 215 TDLEMQIESLNEELAYLKKNHEEEMKEFSNQVVGQVNVEMDATPGIDLTRVLAEMREQYE 274
Query: 849 VMAEQNRKDAEAWFTSRTEELNRE 920
+AE+NR+DAE WF +++ ELN+E
Sbjct: 275 ALAEKNRRDAEEWFQTKSAELNKE 298
Score = 74.3 bits (181), Expect(2) = 7e-95
Identities = 37/51 (72%), Positives = 44/51 (86%)
Frame = +1
Query: 919 KVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRF 1071
+V+ + E +Q SKTE+T+LRRTLQGLEIELQSQLSMKA LE TLAETE R+
Sbjct: 298 EVSSNAEMIQTSKTEITELRRTLQGLEIELQSQLSMKAGLESTLAETECRY 348
>ref|NP_032496.1| keratin, type I cytoskeletal 16 [Mus musculus].
Length = 469
Score = 299 bits (765), Expect(2) = 1e-92
Identities = 146/203 (71%), Positives = 177/203 (87%)
Frame = +3
Query: 312 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLR 491
+EK+TMQNLNDRLA+YL+KVRALE+AN DLEVKIRDWYQ+Q P +DYS YFKTIEDL+
Sbjct: 112 SEKVTMQNLNDRLATYLDKVRALEEANRDLEVKIRDWYQRQRPTEIKDYSPYFKTIEDLK 171
Query: 492 DKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLART 671
KI+ AT EN++ LQIDNARLAADDFRTK+E E LR SVE DINGLR+VLDELTL+R
Sbjct: 172 SKIIIATQENAQFTLQIDNARLAADDFRTKYENELFLRQSVEGDINGLRKVLDELTLSRA 231
Query: 672 DLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEV 851
DLE+QIE L+EELA+LKKNHEEE+ AL+GQ GG V+VE+D+APG+DL++IL++MR QYE
Sbjct: 232 DLEMQIENLREELAFLKKNHEEEMLALRGQTGGDVNVEMDAAPGVDLSRILNEMRDQYEQ 291
Query: 852 MAEQNRKDAEAWFTSRTEELNRE 920
MAE+NR+D EAWF +TEELN+E
Sbjct: 292 MAEKNRRDVEAWFLRKTEELNKE 314
Score = 60.5 bits (145), Expect(2) = 1e-92
Identities = 29/51 (56%), Positives = 42/51 (82%)
Frame = +1
Query: 919 KVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRF 1071
+VA +++ +Q +++EV +LRR QGLEIELQSQLSMKA+LE +L ET+ R+
Sbjct: 314 EVASNSDLIQSNRSEVAELRRVFQGLEIELQSQLSMKASLENSLEETKGRY 364
>ref|NP_034791.2| keratin, type I cytoskeletal 12 [Mus musculus].
Length = 487
Score = 263 bits (671), Expect(2) = 3e-84
Identities = 130/206 (63%), Positives = 166/206 (80%), Gaps = 3/206 (1%)
Frame = +3
Query: 312 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQ---GPGPARDYSHYFKTIE 482
+EK TMQNLNDRLASYL KVR+LE+AN +LE KIR+WY+ + G DYS Y+ IE
Sbjct: 118 SEKETMQNLNDRLASYLGKVRSLEEANAELENKIREWYETRRTRDAGSQSDYSKYYPLIE 177
Query: 483 DLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTL 662
DL++KI+ A + N++++LQIDNARLAA+DFR K+E E ALR +VEADINGLRRVLDELTL
Sbjct: 178 DLKNKIVSARVSNAQLLLQIDNARLAAEDFRMKYENELALRQTVEADINGLRRVLDELTL 237
Query: 663 ARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQ 842
R DLE Q+E L EELAY+KKNHEEE+ + + G+V+VE+D+APG+DL K+L++MR+Q
Sbjct: 238 TRADLEAQLETLTEELAYMKKNHEEELQSFQAGGPGEVNVEMDAAPGVDLTKVLNEMRAQ 297
Query: 843 YEVMAEQNRKDAEAWFTSRTEELNRE 920
YE MAEQNRKDAEAWF ++ EL +E
Sbjct: 298 YEAMAEQNRKDAEAWFLEKSRELRKE 323
Score = 68.6 bits (166), Expect(2) = 3e-84
Identities = 33/48 (68%), Positives = 44/48 (91%)
Frame = +1
Query: 919 KVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETE 1062
+++ +TEQLQ SK+EVTDL+R +Q LEIELQSQL+MK++LEG+LAETE
Sbjct: 323 EISSNTEQLQSSKSEVTDLKRMVQNLEIELQSQLAMKSSLEGSLAETE 370
>ref|NP_034790.2| keratin, type I cytoskeletal 10 [Mus musculus].
Length = 561
Score = 265 bits (677), Expect(2) = 2e-83
Identities = 131/206 (63%), Positives = 169/206 (82%), Gaps = 3/206 (1%)
Frame = +3
Query: 312 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPAR---DYSHYFKTIE 482
NEK+TMQNLNDRLASY++KVRALE++N +LE KI++WY+K G R DYS Y+KTIE
Sbjct: 134 NEKVTMQNLNDRLASYMDKVRALEESNYELEGKIKEWYEKHGNSSQREPRDYSKYYKTIE 193
Query: 483 DLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTL 662
DL+ +IL T +N+ ++LQIDNARLAADDFR K+E E LR SVEADINGLRRVLDELTL
Sbjct: 194 DLKGQILTLTTDNANVLLQIDNARLAADDFRLKYENEVTLRQSVEADINGLRRVLDELTL 253
Query: 663 ARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQ 842
+++DLE+QIE L EELAYLKKNHEEE+ L+ G V+VE+++APG+DL ++L++MR+Q
Sbjct: 254 SKSDLEMQIESLNEELAYLKKNHEEEMRDLQNVSTGDVNVEMNAAPGVDLTQLLNNMRNQ 313
Query: 843 YEVMAEQNRKDAEAWFTSRTEELNRE 920
YE +AE+NRKDAE WF +++EL E
Sbjct: 314 YEQLAEKNRKDAEEWFNQKSKELTTE 339
Score = 63.5 bits (153), Expect(2) = 2e-83
Identities = 30/53 (56%), Positives = 43/53 (81%)
Frame = +1
Query: 913 TGKVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRF 1071
T ++ + EQ+ K+E+T+LRRT+QGLEIELQSQL++K +LE +LAETE R+
Sbjct: 337 TTEIDSNIEQMSSHKSEITELRRTVQGLEIELQSQLALKQSLEASLAETEGRY 389
>ref|NP_001167570.1| keratin, type I cuticular Ha6 [Mus musculus].
Length = 473
Score = 264 bits (674), Expect(2) = 6e-82
Identities = 130/203 (64%), Positives = 162/203 (79%)
Frame = +3
Query: 312 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLR 491
NEK TMQ LNDRLA+YLEKVR LEQ N LE +IR+WY+ Q P DY YFKT E+L+
Sbjct: 92 NEKATMQILNDRLANYLEKVRQLEQENTQLECRIREWYECQIPYICPDYQSYFKTAEELQ 151
Query: 492 DKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLART 671
KIL EN++++LQIDNA+LAADDFRTK+ETE +LR VEADINGLRR+LDELTL +
Sbjct: 152 QKILLTKSENARLILQIDNAKLAADDFRTKYETELSLRQLVEADINGLRRILDELTLCKA 211
Query: 672 DLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEV 851
DLE Q+E LKEEL LK+NHEEE++AL+ Q+G +++VEVD+AP +DL KIL DMR QYE
Sbjct: 212 DLEAQVESLKEELLCLKRNHEEEVNALRSQLGDRLNVEVDAAPPVDLNKILDDMRCQYET 271
Query: 852 MAEQNRKDAEAWFTSRTEELNRE 920
+ E NR+D EAWF ++TEELN++
Sbjct: 272 LVENNRRDVEAWFNTQTEELNQQ 294
Score = 59.7 bits (143), Expect(2) = 6e-82
Identities = 29/53 (54%), Positives = 40/53 (75%)
Frame = +1
Query: 919 KVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRFGA 1077
+V +EQLQ +TE+ +LRRT+ LEIELQ+Q SM+ +LE TLAETE R+ +
Sbjct: 294 QVVSSSEQLQCCQTEIIELRRTVNSLEIELQAQQSMRNSLESTLAETEARYSS 346
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,764,734
Number of extensions: 826655
Number of successful extensions: 4202
Number of sequences better than 1.0e-05: 78
Number of HSP's gapped: 4017
Number of HSP's successfully gapped: 105
Length of query: 359
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 256
Effective length of database: 12,523,851
Effective search space: 3206105856
Effective search space used: 3206105856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001866
(1078 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131485.1| PREDICTED: keratin, type I cytoskeletal 19-l... 425 e-142
Alignment gi|XP_003131486.1| PREDICTED: keratin, type I cytoskeletal 15-l... 303 7e-99
Alignment gi|XP_003131484.1| PREDICTED: keratin, type I cytoskeletal 13-l... 300 2e-95
Alignment gi|XP_003131509.1| PREDICTED: keratin, type I cytoskeletal 12 [... 269 8e-86
Alignment gi|XP_003131508.1| PREDICTED: keratin, type I cytoskeletal 10-l... 270 9e-85
Alignment gi|XP_003131480.2| PREDICTED: keratin, type I cuticular Ha6 iso... 261 1e-80
Alignment gi|XP_003131482.2| PREDICTED: keratin, type I cuticular Ha5-lik... 251 1e-76
Alignment gi|XP_003131481.1| PREDICTED: keratin, type I cuticular Ha2 [Su... 246 6e-75
Alignment gi|XP_003131477.1| PREDICTED: keratin, type I microfibrillar 48... 245 2e-74
Alignment gi|XP_003131478.1| PREDICTED: LOW QUALITY PROTEIN: keratin, typ... 242 2e-73
>ref|XP_003131485.1| PREDICTED: keratin, type I cytoskeletal 19-like [Sus scrofa].
Length = 404
Score = 425 bits (1093), Expect(2) = e-142
Identities = 226/271 (83%), Positives = 226/271 (83%)
Frame = +3
Query: 108 FGGLGGGSVRFSAGGAFRAPSIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 287
FGGLGGGSVRFSAGGAFRAPSIH
Sbjct: 15 FGGLGGGSVRFSAGGAFRAPSIHGGSGGRGVSVSSARFVSSSSSGGYGGGYGGGYAGALA 74
Query: 288 XXXXXXXXNEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHY 467
NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHY
Sbjct: 75 GSDGLLAGNEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHY 134
Query: 468 FKTIEDLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVL 647
FKTIEDLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVL
Sbjct: 135 FKTIEDLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVL 194
Query: 648 DELTLARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILS 827
DELTLARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILS
Sbjct: 195 DELTLARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILS 254
Query: 828 DMRSQYEVMAEQNRKDAEAWFTSRTEELNRE 920
DMRSQYEVMAEQNRKDAEAWFTSRTEELNRE
Sbjct: 255 DMRSQYEVMAEQNRKDAEAWFTSRTEELNRE 285
Score = 98.6 bits (244), Expect(2) = e-142
Identities = 51/53 (96%), Positives = 52/53 (98%)
Frame = +1
Query: 919 KVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRFGA 1077
+VAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETE RFGA
Sbjct: 285 EVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEARFGA 337
>ref|XP_003131486.1| PREDICTED: keratin, type I cytoskeletal 15-like [Sus scrofa].
Length = 460
Score = 303 bits (776), Expect(2) = 7e-99
Identities = 147/204 (72%), Positives = 176/204 (86%), Gaps = 1/204 (0%)
Frame = +3
Query: 312 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPG-PARDYSHYFKTIEDL 488
NEK+TMQNLNDRLASYL+KVRALE+AN DLEVKI DWY+KQ P P RDYS YFKT+E+L
Sbjct: 110 NEKITMQNLNDRLASYLDKVRALEEANADLEVKIHDWYKKQSPSSPERDYSPYFKTMEEL 169
Query: 489 RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 668
RDKI A I+NS+++L+IDNARLAADDFR K+E E ALR VEADINGLRRVLDELTL +
Sbjct: 170 RDKIRAAAIDNSRVILEIDNARLAADDFRLKYENELALRQGVEADINGLRRVLDELTLTK 229
Query: 669 TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 848
TDLE+QIE L EELAYLKKNHEEE+ Q+ GQV+VE+D+APG+DL ++L++MR QYE
Sbjct: 230 TDLEMQIESLNEELAYLKKNHEEEMKEFSNQLAGQVNVEMDAAPGVDLTRVLAEMREQYE 289
Query: 849 VMAEQNRKDAEAWFTSRTEELNRE 920
+AE+NR+DAEAWF S+TEELN+E
Sbjct: 290 AIAEKNRRDAEAWFFSKTEELNKE 313
Score = 76.3 bits (186), Expect(2) = 7e-99
Identities = 38/51 (74%), Positives = 45/51 (88%)
Frame = +1
Query: 919 KVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRF 1071
+VA +TE +Q SKTE+TDLRRT+QGLEIELQSQLSMKA LE +LAETE R+
Sbjct: 313 EVASNTEMIQTSKTEITDLRRTVQGLEIELQSQLSMKAGLESSLAETECRY 363
>ref|XP_003131484.1| PREDICTED: keratin, type I cytoskeletal 13-like [Sus scrofa].
Length = 454
Score = 300 bits (768), Expect(2) = 2e-95
Identities = 148/204 (72%), Positives = 173/204 (84%), Gaps = 1/204 (0%)
Frame = +3
Query: 312 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPG-PARDYSHYFKTIEDL 488
NEK+TMQNLNDRLASYLEKVRALE+AN DLEVKIRDWYQKQ P P RDYS YFKTIE+L
Sbjct: 101 NEKITMQNLNDRLASYLEKVRALEEANTDLEVKIRDWYQKQSPSSPERDYSPYFKTIEEL 160
Query: 489 RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 668
RDKI A IEN+++VLQIDNARLAADDFR K+E E LR SVEADINGLRRVLDELTL +
Sbjct: 161 RDKIQAANIENNRVVLQIDNARLAADDFRLKYENELTLRQSVEADINGLRRVLDELTLTK 220
Query: 669 TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 848
TDLE+QIE L EELA+LKKNHEEE+ +V GQV+VE+D+ PG+DL ++L++MR QYE
Sbjct: 221 TDLEMQIESLNEELAFLKKNHEEEMKEFSNRVVGQVNVEMDATPGVDLTRVLAEMREQYE 280
Query: 849 VMAEQNRKDAEAWFTSRTEELNRE 920
MAE+NR++AE WF + EELN+E
Sbjct: 281 AMAEKNRREAEEWFNKKIEELNKE 304
Score = 67.8 bits (164), Expect(2) = 2e-95
Identities = 35/51 (68%), Positives = 41/51 (80%)
Frame = +1
Query: 919 KVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRF 1071
+V T +Q SKTE+T+LRRTLQGLEIELQSQLS KA LE +LAETE R+
Sbjct: 304 EVISSTALIQTSKTEITELRRTLQGLEIELQSQLSTKAGLENSLAETECRY 354
>ref|XP_003131509.1| PREDICTED: keratin, type I cytoskeletal 12 [Sus scrofa].
Length = 494
Score = 269 bits (687), Expect(2) = 8e-86
Identities = 136/208 (65%), Positives = 168/208 (80%), Gaps = 5/208 (2%)
Frame = +3
Query: 312 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPA-----RDYSHYFKT 476
+EK TM+NLNDRLASYL+KVRALE+AN DLE KIR+WY+ +G G DYS YF
Sbjct: 123 SEKETMKNLNDRLASYLDKVRALEEANTDLENKIREWYETRGSGTGDPRSQSDYSKYFPL 182
Query: 477 IEDLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDEL 656
IE+L++KI+ A+I N++++LQIDNARLAA+DFR K+E E AL +VEADINGLRRVLDEL
Sbjct: 183 IEELKNKIISASIANAQLILQIDNARLAAEDFRMKYENEVALCQNVEADINGLRRVLDEL 242
Query: 657 TLARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMR 836
TL R DLE QIE L EELAYLKKNHEEE+ + + GQVSVE+D+APG+DL K+L+DMR
Sbjct: 243 TLVRADLETQIETLNEELAYLKKNHEEELQSFRAGGPGQVSVEMDAAPGVDLTKLLNDMR 302
Query: 837 SQYEVMAEQNRKDAEAWFTSRTEELNRE 920
+QYE +AEQNRKDAEAWF ++ EL +E
Sbjct: 303 AQYEAIAEQNRKDAEAWFIEKSGELRKE 330
Score = 67.0 bits (162), Expect(2) = 8e-86
Identities = 34/48 (70%), Positives = 42/48 (87%)
Frame = +1
Query: 919 KVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETE 1062
+++ +TEQLQ SK+EVTDLRR LQ LEIELQSQL+MK +LE +LAETE
Sbjct: 330 EISTNTEQLQSSKSEVTDLRRALQNLEIELQSQLAMKKSLEDSLAETE 377
>ref|XP_003131508.1| PREDICTED: keratin, type I cytoskeletal 10-like [Sus scrofa].
Length = 613
Score = 270 bits (690), Expect(2) = 9e-85
Identities = 133/206 (64%), Positives = 169/206 (82%), Gaps = 3/206 (1%)
Frame = +3
Query: 312 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGP---GPARDYSHYFKTIE 482
NEK+TMQNLNDRLASYL+KVRALE +N +LEVKI++WY K G RDYS Y+K IE
Sbjct: 157 NEKVTMQNLNDRLASYLDKVRALEDSNYELEVKIKEWYDKHGNVGRREPRDYSKYYKIIE 216
Query: 483 DLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTL 662
DL+++I+ T++N+ I++Q+DNARLAADDFR K+E E LR SVEADINGLRRVLDELTL
Sbjct: 217 DLKNQIINLTVDNANILIQVDNARLAADDFRMKYENEVTLRQSVEADINGLRRVLDELTL 276
Query: 663 ARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQ 842
+TDLE+QIE L EELAYLKKNHEEE+ L+ G V+VE+++APG+DL ++L++MRSQ
Sbjct: 277 TKTDLEMQIESLNEELAYLKKNHEEEMRDLQNVSTGDVNVEMNAAPGVDLTELLNNMRSQ 336
Query: 843 YEVMAEQNRKDAEAWFTSRTEELNRE 920
YE +AEQNR+DAEAWF +++EL E
Sbjct: 337 YEQLAEQNRRDAEAWFNEKSKELTTE 362
Score = 62.4 bits (150), Expect(2) = 9e-85
Identities = 30/53 (56%), Positives = 43/53 (81%)
Frame = +1
Query: 913 TGKVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRF 1071
T ++ + EQ+ K+E+T+LRRT+QGLEIELQSQL++K +LE +LAETE R+
Sbjct: 360 TTEINTNIEQVSSYKSEITELRRTIQGLEIELQSQLALKQSLEASLAETEGRY 412
>ref|XP_003131480.2| PREDICTED: keratin, type I cuticular Ha6 isoform 2 [Sus scrofa].
Length = 459
Score = 261 bits (667), Expect(2) = 1e-80
Identities = 128/203 (63%), Positives = 162/203 (79%)
Frame = +3
Query: 312 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLR 491
NEK TMQ LNDRLA+YLEKVR LE+ N +LE +IR+WY+ Q P DY YFKTIE+L+
Sbjct: 92 NEKETMQFLNDRLANYLEKVRQLERDNAELESRIREWYESQIPYICPDYQAYFKTIEELQ 151
Query: 492 DKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLART 671
KIL +N+++VLQIDNA+LAADDFRTK+ETE +R VEAD NGLRR+LDELTL +
Sbjct: 152 QKILITKADNARLVLQIDNAKLAADDFRTKYETELGMRQLVEADTNGLRRILDELTLCKA 211
Query: 672 DLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEV 851
DLE+Q+E LKEEL LKKNHEEE++ L+ Q+G +++VEVD+AP +DL KIL DMR QYE
Sbjct: 212 DLEMQVESLKEELICLKKNHEEEVNTLRCQLGDRLNVEVDAAPPVDLNKILDDMRCQYEA 271
Query: 852 MAEQNRKDAEAWFTSRTEELNRE 920
+ E NR+D EAWF ++TEELN++
Sbjct: 272 LVENNRRDVEAWFNTQTEELNQQ 294
Score = 57.4 bits (137), Expect(2) = 1e-80
Identities = 28/53 (52%), Positives = 39/53 (73%)
Frame = +1
Query: 919 KVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRFGA 1077
+V +EQLQ +TE+ +LRR + LEIELQ+Q SM+ +LE TLAETE R+ +
Sbjct: 294 QVVSSSEQLQCCQTEIIELRRNVNALEIELQAQHSMRNSLEATLAETEARYSS 346
>ref|XP_003131482.2| PREDICTED: keratin, type I cuticular Ha5-like [Sus scrofa].
Length = 493
Score = 251 bits (641), Expect(2) = 1e-76
Identities = 120/203 (59%), Positives = 164/203 (80%)
Frame = +3
Query: 312 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLR 491
NEK TMQ+LNDRLASYLEKVR LE+ N +LE +IR+W ++Q P DY YF+TIE+L+
Sbjct: 134 NEKETMQSLNDRLASYLEKVRRLERENSELEGRIREWCEQQEPYLCPDYQSYFQTIEELQ 193
Query: 492 DKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLART 671
K L EN+++V+QIDNA+LAADDFR+K+ETE ++R VE+D+NGLRR+LD+LTL +
Sbjct: 194 KKTLCTKAENARLVVQIDNAKLAADDFRSKYETEVSMRQLVESDMNGLRRILDDLTLCKA 253
Query: 672 DLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEV 851
DLE Q+E LKEEL LKKNHEEE+++L+ Q+G +++VEVD+AP +DL ++L +MR QYE
Sbjct: 254 DLEAQVESLKEELLCLKKNHEEEVNSLRCQLGDRLNVEVDAAPPVDLNRVLDEMRCQYET 313
Query: 852 MAEQNRKDAEAWFTSRTEELNRE 920
+ E NR+DAE WF ++TEELN++
Sbjct: 314 LVENNRRDAEDWFNTQTEELNQQ 336
Score = 54.3 bits (129), Expect(2) = 1e-76
Identities = 27/53 (50%), Positives = 38/53 (71%)
Frame = +1
Query: 919 KVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRFGA 1077
+V +EQLQ + ++ +LRR + LEIELQ+Q SM+ ALE TLAETE R+ +
Sbjct: 336 QVVTSSEQLQSCQADIMELRRNVNALEIELQAQHSMRDALESTLAETEARYSS 388
>ref|XP_003131481.1| PREDICTED: keratin, type I cuticular Ha2 [Sus scrofa].
Length = 460
Score = 246 bits (629), Expect(2) = 6e-75
Identities = 120/203 (59%), Positives = 158/203 (77%)
Frame = +3
Query: 312 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLR 491
NEK T+Q LNDRLA YLEKVR LEQ N +LE KI++ Q Q P + +Y YF+TIE+L+
Sbjct: 107 NEKETLQFLNDRLAKYLEKVRQLEQDNAELESKIQEASQSQVPTLSSNYHSYFRTIEELQ 166
Query: 492 DKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLART 671
KIL EN++ ++ +DNA+LAADDFRTK+ETE A+R VEAD NGLRR+LDELTL +
Sbjct: 167 QKILCTRAENARTIVHMDNAKLAADDFRTKYETELAMRQLVEADTNGLRRILDELTLCKA 226
Query: 672 DLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEV 851
DLE+Q+E LKEEL LKKNHEEE+ AL+GQ+G ++++EVD+AP +DL ++L +MR QYE
Sbjct: 227 DLEMQVESLKEELMCLKKNHEEEVGALQGQLGDRLNIEVDAAPPVDLNRVLEEMRCQYEA 286
Query: 852 MAEQNRKDAEAWFTSRTEELNRE 920
+ E NR+D E WFT + EELN++
Sbjct: 287 LVESNRRDVEEWFTMQMEELNQQ 309
Score = 53.1 bits (126), Expect(2) = 6e-75
Identities = 27/53 (50%), Positives = 39/53 (73%)
Frame = +1
Query: 919 KVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRFGA 1077
+VA +EQLQ +++ DLRRT+ LEIELQ+Q S++ +LE TL ETE R+ +
Sbjct: 309 QVATSSEQLQSYQSDAIDLRRTVNMLEIELQAQHSLRDSLENTLTETEARYSS 361
>ref|XP_003131477.1| PREDICTED: keratin, type I microfibrillar 48 kDa, component
8C-1-like [Sus scrofa].
Length = 414
Score = 245 bits (626), Expect(2) = 2e-74
Identities = 121/203 (59%), Positives = 160/203 (78%)
Frame = +3
Query: 312 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLR 491
NEK TMQ LNDRLASYLEKVR LE+ N +LE +I++ Q+Q P +Y YF+TIE+L+
Sbjct: 55 NEKETMQFLNDRLASYLEKVRQLERDNAELERQIQERSQQQEPLVCPNYQSYFRTIEELQ 114
Query: 492 DKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLART 671
KIL + EN+++V+QIDNA+LAADDFRTK+ETE LR VE+DINGLRR+LDELTL +
Sbjct: 115 QKILCSKSENARLVVQIDNAKLAADDFRTKYETELGLRQLVESDINGLRRILDELTLCKA 174
Query: 672 DLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEV 851
DLE Q+E LKEEL LK NHEEE+++L+ Q+G ++++EVD+AP +DL +LS+ RSQYE
Sbjct: 175 DLEAQVESLKEELLCLKSNHEEEVNSLRSQLGDRLNIEVDAAPTVDLNSVLSETRSQYEA 234
Query: 852 MAEQNRKDAEAWFTSRTEELNRE 920
+ E NR+D E WF +TEELN++
Sbjct: 235 LVETNRRDVEEWFARQTEELNKQ 257
Score = 52.4 bits (124), Expect(2) = 2e-74
Identities = 24/53 (45%), Positives = 38/53 (71%)
Frame = +1
Query: 919 KVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRFGA 1077
+V +EQLQ + E+ +LRRT+ LE+ELQ+Q +++ +LE TL ETE R+ +
Sbjct: 257 QVVSSSEQLQSYQAEIIELRRTVNALEVELQAQHNLRDSLENTLTETEARYSS 309
>ref|XP_003131478.1| PREDICTED: LOW QUALITY PROTEIN: keratin, type I cuticular Ha4-like
[Sus scrofa].
Length = 435
Score = 242 bits (617), Expect(2) = 2e-73
Identities = 117/203 (57%), Positives = 160/203 (78%)
Frame = +3
Query: 312 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLR 491
NEK TMQ LNDRLASYLEKVR LE+ N +LE +I++ Q+Q P +Y YF+TIE+L+
Sbjct: 99 NEKETMQFLNDRLASYLEKVRQLERDNAELERQIQERSQQQEPLVCPNYQSYFRTIEELQ 158
Query: 492 DKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLART 671
KIL A EN+++V+Q+DNA+LAADDFRTK+E E++ R VE+DIN LRR+LDELTL +
Sbjct: 159 QKILSAKSENTRLVVQVDNAKLAADDFRTKYEVERSSRQLVESDINSLRRILDELTLCKA 218
Query: 672 DLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEV 851
DLE Q+E L+EEL LKKNHEEE+++L+ Q+G ++++EVD+AP +DL +L++ RSQYE
Sbjct: 219 DLETQVESLREELLCLKKNHEEEVNSLRSQLGDRLNIEVDAAPTVDLNSVLNETRSQYEA 278
Query: 852 MAEQNRKDAEAWFTSRTEELNRE 920
+ E NR+D E WF +TEELN++
Sbjct: 279 LVETNRRDVEEWFARQTEELNKQ 301
Score = 52.4 bits (124), Expect(2) = 2e-73
Identities = 24/53 (45%), Positives = 38/53 (71%)
Frame = +1
Query: 919 KVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEPRFGA 1077
+V +EQLQ + E+ +LRRT+ LE+ELQ+Q +++ +LE TL ETE R+ +
Sbjct: 301 QVVSSSEQLQSYQAEIIELRRTVNALEVELQAQHNLRDSLENTLTETEARYSS 353
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,475,923
Number of extensions: 661519
Number of successful extensions: 3760
Number of sequences better than 1.0e-05: 59
Number of HSP's gapped: 3627
Number of HSP's successfully gapped: 80
Length of query: 359
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 259
Effective length of database: 8,854,232
Effective search space: 2293246088
Effective search space used: 2293246088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001866
(1078 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 454 e-125
Sscrofa_Chr05 64 2e-07
>Sscrofa_Chr12
|| Length = 63588571
Score = 454 bits (229), Expect = e-125
Identities = 229/229 (100%)
Strand = Plus / Plus
Query: 9 attcctccagccgccccgcagcacctccgaccggtgtcgcccgcgtctgccttcgccatg 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21536799 attcctccagccgccccgcagcacctccgaccggtgtcgcccgcgtctgccttcgccatg 21536858
Query: 69 acttcctacagctatcgccagtcgtcggccacctcgtccttcgggggtctgggcggcggc 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21536859 acttcctacagctatcgccagtcgtcggccacctcgtccttcgggggtctgggcggcggc 21536918
Query: 129 tccgtgcgcttcagcgcgggaggcgccttccgcgcccccagcatccacgggggctccggc 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21536919 tccgtgcgcttcagcgcgggaggcgccttccgcgcccccagcatccacgggggctccggc 21536978
Query: 189 ggccgcggcgtgtcggtgtcgtccgcccgcttcgtgtcctcgtcctcct 237
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21536979 ggccgcggcgtgtcggtgtcgtccgcccgcttcgtgtcctcgtcctcct 21537027
Score = 389 bits (196), Expect = e-105
Identities = 196/196 (100%)
Strand = Plus / Plus
Query: 302 gctggcgggcaacgagaagctcaccatgcagaacctcaacgaccgcctggcctcctacct 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21537092 gctggcgggcaacgagaagctcaccatgcagaacctcaacgaccgcctggcctcctacct 21537151
Query: 362 ggagaaggtgcgcgccttggagcaggccaacggtgacctggaggtgaagatccgcgactg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21537152 ggagaaggtgcgcgccttggagcaggccaacggtgacctggaggtgaagatccgcgactg 21537211
Query: 422 gtaccagaagcaggggcccgggcctgcccgcgactacagccactacttcaagaccatcga 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21537212 gtaccagaagcaggggcccgggcctgcccgcgactacagccactacttcaagaccatcga 21537271
Query: 482 ggacctgcgggacaag 497
||||||||||||||||
Sbjct: 21537272 ggacctgcgggacaag 21537287
Score = 317 bits (160), Expect = 7e-84
Identities = 163/164 (99%)
Strand = Plus / Plus
Query: 736 aggaaatcagtgccctgaagggccaggtgggcggccaggtcagtgtggaggttgattcgg 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21539379 aggaaatcagtgccctgaagggccaggtgggcggccaggtcagtgtggaggttgattcgg 21539438
Query: 796 ctccgggcatcgacctagccaagatcctgagcgacatgagaagccagtatgaggtcatgg 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21539439 ctccgggcatcgacctagccaagatcctgagcgacatgagaagccagtatgaggtcatgg 21539498
Query: 856 ctgagcaaaaccggaaggatgctgaggcctggttcaccagccgg 899
||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 21539499 ctgagcagaaccggaaggatgctgaggcctggttcaccagccgg 21539542
Score = 305 bits (154), Expect = 3e-80
Identities = 157/158 (99%)
Strand = Plus / Plus
Query: 581 gttcgagacagagcaggccctgcgcctgagcgtggaggccgacatcaacggcctgcgcag 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21538976 gttcgagacagagcaggccctgcgcctgagcgtggaggccgacatcaacggcctgcgcag 21539035
Query: 641 ggtgctggacgagctgaccctggccaggactgacctggagctgcagatcgaaggcctgaa 700
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 21539036 ggtgctggacgagctgaccctggccaggaccgacctggagctgcagatcgaaggcctgaa 21539095
Query: 701 ggaagagctggcctacctgaagaagaaccacgaggagg 738
||||||||||||||||||||||||||||||||||||||
Sbjct: 21539096 ggaagagctggcctacctgaagaagaaccacgaggagg 21539133
Score = 254 bits (128), Expect = 9e-65
Identities = 158/168 (94%)
Strand = Plus / Plus
Query: 324 accatgcagaacctcaacgaccgcctggcctcctacctggagaaggtgcgcgccttggag 383
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 21316374 accatgcagaacctcaacgaccgcctggcctcctacctggacaaggtgcgcgccctggag 21316433
Query: 384 caggccaacggtgacctggaggtgaagatccgcgactggtaccagaagcaggggcccggg 443
||||||||| ||||||||||||||||||| |||||||||| |||||||||| ||||||
Sbjct: 21316434 gaggccaacgccgacctggaggtgaagatccacgactggtacaagaagcagggccccggg 21316493
Query: 444 cctgcccgcgactacagccactacttcaagaccatcgaggacctgcgg 491
|||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 21316494 cctgcccgcgactacagcgcctacttcaagaccatcgaggacctgcgg 21316541
Score = 238 bits (120), Expect = 5e-60
Identities = 127/128 (99%), Gaps = 1/128 (0%)
Strand = Plus / Plus
Query: 899 gactgaggagctgaaccgggaaggtcgctggccacacggagcagctgcagatcagcaaga 958
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 21539633 gactgaggagctgaaccggga-ggtcgctggccacacggagcagctgcagatcagcaaga 21539691
Query: 959 cggaagtcaccgatctgcggcgcaccctccagggtctggagatcgagctgcagtctcagc 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21539692 cggaagtcaccgatctgcggcgcaccctccagggtctggagatcgagctgcagtctcagc 21539751
Query: 1019 tcagcatg 1026
||||||||
Sbjct: 21539752 tcagcatg 21539759
Score = 228 bits (115), Expect = 5e-57
Identities = 160/175 (91%)
Strand = Plus / Plus
Query: 314 cgagaagctcaccatgcagaacctcaacgaccgcctggcctcctacctggagaaggtgcg 373
||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 21326641 cgagaaggccaccatgcagaacctcaatgaccgcctggcctcctacctggacaaggtgcg 21326700
Query: 374 cgccttggagcaggccaacggtgacctggaggtgaagatccgcgactggtaccagaagca 433
|||| ||||| ||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 21326701 cgccctggaggaggccaacgccgacctggaggtgaagatccgcgactggtaccagaggca 21326760
Query: 434 ggggcccgggcctgcccgcgactacagccactacttcaagaccatcgaggacctg 488
|| || ||||| || | |||||||||||||||||||||||||||||||||||||
Sbjct: 21326761 ggccccagggcccgctcccgactacagccactacttcaagaccatcgaggacctg 21326815
Score = 226 bits (114), Expect = 2e-56
Identities = 173/192 (90%), Gaps = 3/192 (1%)
Strand = Plus / Minus
Query: 309 ggcaacgagaagctcaccatgcagaacctcaacgaccgcctggcctcctacctggagaag 368
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21479447 ggcaacgagaagatcaccatgcagaacctcaacgaccgcctggcctcctacctggagaag 21479388
Query: 369 gtgcgcgccttggagcaggccaacggtgacctggaggtgaagatccgcgactggtaccag 428
||||||||| ||||| |||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 21479387 gtgcgcgccctggaggaggccaacactgacctggaggtgaagatccgtgactggtaccag 21479328
Query: 429 aagcaggggcc---cgggcctgcccgcgactacagccactacttcaagaccatcgaggac 485
|||||| | || | | || | ||||||||||||| |||||||||||||||||||||
Sbjct: 21479327 aagcagagccccagcagcccggagcgcgactacagcccctacttcaagaccatcgaggag 21479268
Query: 486 ctgcgggacaag 497
|| |||||||||
Sbjct: 21479267 ctccgggacaag 21479256
Score = 208 bits (105), Expect = 5e-51
Identities = 132/141 (93%)
Strand = Plus / Minus
Query: 598 ccctgcgcctgagcgtggaggccgacatcaacggcctgcgcagggtgctggacgagctga 657
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21844461 ccctgcgccagagcgtggaggccgacatcaacggcctgcgcagggtgctggacgagctga 21844402
Query: 658 ccctggccaggactgacctggagctgcagatcgaaggcctgaaggaagagctggcctacc 717
||||| ||| ||| ||||||||| ||||||| ||| ||||||| || |||||||||||||
Sbjct: 21844401 ccctgaccaagaccgacctggagatgcagattgaaagcctgaatgaggagctggcctacc 21844342
Query: 718 tgaagaagaaccacgaggagg 738
|||||||||||||||||||||
Sbjct: 21844341 tgaagaagaaccacgaggagg 21844321
Score = 204 bits (103), Expect = 7e-50
Identities = 172/195 (88%)
Strand = Plus / Plus
Query: 303 ctggcgggcaacgagaagctcaccatgcagaacctcaacgaccgcctggcctcctacctg 362
|||| ||||| ||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 21339791 ctggtgggcagcgagaaggtgaccatgcagaacctcaacgaccgcctggcctcctacctg 21339850
Query: 363 gagaaggtgcgcgccttggagcaggccaacggtgacctggaggtgaagatccgcgactgg 422
|| |||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 21339851 gacaaggtgcgcgccctggaggaggccaacgccgacctggaggtgaagatccgcgactgg 21339910
Query: 423 taccagaagcaggggcccgggcctgcccgcgactacagccactacttcaagaccatcgag 482
||||||| |||| |||| | || |||||||||| |||||||||||||||||||
Sbjct: 21339911 taccagaggcagcggccggctgagtccaaggactacagcccctacttcaagaccatcgag 21339970
Query: 483 gacctgcgggacaag 497
||||||||| |||||
Sbjct: 21339971 gacctgcggaacaag 21339985
Score = 194 bits (98), Expect = 7e-47
Identities = 169/192 (88%), Gaps = 3/192 (1%)
Strand = Plus / Minus
Query: 309 ggcaacgagaagctcaccatgcagaacctcaacgaccgcctggcctcctacctggagaag 368
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 21494024 ggcaacgagaagatcaccatgcagaacctcaacgaccgcctggcctcctacctggacaag 21493965
Query: 369 gtgcgcgccttggagcaggccaacggtgacctggaggtgaagatccgcgactggtaccag 428
||||||||| ||||| ||||||||| ||||||||||||||||||| ||||||||| ||
Sbjct: 21493964 gtgcgcgccctggaggaggccaacgccgacctggaggtgaagatccatgactggtacaag 21493905
Query: 429 aagcaggggcc---cgggcctgcccgcgactacagccactacttcaagaccatcgaggac 485
|||||| | || | | || | ||||||||||||| ||||||||||||||| |||||
Sbjct: 21493904 aagcagagccccagcagcccggagcgcgactacagcccctacttcaagaccatggaggag 21493845
Query: 486 ctgcgggacaag 497
|| |||||||||
Sbjct: 21493844 ctccgggacaag 21493833
Score = 190 bits (96), Expect = 1e-45
Identities = 135/148 (91%)
Strand = Plus / Minus
Query: 591 gagcaggccctgcgcctgagcgtggaggccgacatcaacggcctgcgcagggtgctggac 650
|||| ||| ||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 21492854 gagctggcgctgcgccagggcgtggaggccgacatcaacggcctgcgcagggtgctggac 21492795
Query: 651 gagctgaccctggccaggactgacctggagctgcagatcgaaggcctgaaggaagagctg 710
||||||||| || ||| ||||||||||||| |||||||||| ||||||| || ||||||
Sbjct: 21492794 gagctgaccttgaccaagactgacctggagatgcagatcgagagcctgaacgaggagctg 21492735
Query: 711 gcctacctgaagaagaaccacgaggagg 738
|||||||||||||||||||| |||||||
Sbjct: 21492734 gcctacctgaagaagaaccatgaggagg 21492707
Score = 184 bits (93), Expect = 7e-44
Identities = 129/141 (91%)
Strand = Plus / Minus
Query: 598 ccctgcgcctgagcgtggaggccgacatcaacggcctgcgcagggtgctggacgagctga 657
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 21477790 ccctgcgccagagcgtggaggccgacatcaacggcctgcgcagggtgctggatgagctga 21477731
Query: 658 ccctggccaggactgacctggagctgcagatcgaaggcctgaaggaagagctggcctacc 717
|| || ||| ||| ||||||||| |||||||||| ||||||| || |||||||||| ||
Sbjct: 21477730 ccttgaccaagaccgacctggagatgcagatcgagagcctgaacgaggagctggccttcc 21477671
Query: 718 tgaagaagaaccacgaggagg 738
|||||||||||||||||||||
Sbjct: 21477670 tgaagaagaaccacgaggagg 21477650
Score = 172 bits (87), Expect = 3e-40
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 496 agattctcggtgccaccattgagaactccaagatagtcctgcagatcgacaacgcccgtc 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21538664 agattctcggtgccaccattgagaactccaagatagtcctgcagatcgacaacgcccgtc 21538723
Query: 556 tggctgcagatgacttccgaaccaagt 582
|||||||||||||||||||||||||||
Sbjct: 21538724 tggctgcagatgacttccgaaccaagt 21538750
Score = 167 bits (84), Expect = 2e-38
Identities = 126/140 (90%)
Strand = Plus / Plus
Query: 599 cctgcgcctgagcgtggaggccgacatcaacggcctgcgcagggtgctggacgagctgac 658
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 21342011 cctgcgcatgagcgtggaggccgacatcaacgggctgcgcagggtgctggacgagctgac 21342070
Query: 659 cctggccaggactgacctggagctgcagatcgaaggcctgaaggaagagctggcctacct 718
||||||||| | ||||||||| |||||||||| |||| ||||| ||||||||||||||
Sbjct: 21342071 cctggccagagccgacctggagatgcagatcgagagcctcaaggaggagctggcctacct 21342130
Query: 719 gaagaagaaccacgaggagg 738
||||||||||||||||
Sbjct: 21342131 ccgaaagaaccacgaggagg 21342150
Score = 159 bits (80), Expect = 4e-36
Identities = 125/140 (89%)
Strand = Plus / Plus
Query: 599 cctgcgcctgagcgtggaggccgacatcaacggcctgcgcagggtgctggacgagctgac 658
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 21320070 cctgcgcatgagcgtggaggccgacatcaacgggctgcgcagggtgctggacgagctgac 21320129
Query: 659 cctggccaggactgacctggagctgcagatcgaaggcctgaaggaagagctggcctacct 718
||||||||| | ||||||||| |||||||||| ||| ||||| ||||||||||||||
Sbjct: 21320130 cctggccagagccgacctggagatgcagatcgagaacctcaaggaggagctggcctacct 21320189
Query: 719 gaagaagaaccacgaggagg 738
||||||||||||||||
Sbjct: 21320190 ccgaaagaaccacgaggagg 21320209
Score = 157 bits (79), Expect = 2e-35
Identities = 127/143 (88%)
Strand = Plus / Minus
Query: 596 ggccctgcgcctgagcgtggaggccgacatcaacggcctgcgcagggtgctggacgagct 655
||||||| ||| || ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 21883754 ggccctgtgccagaacgtggaggccgacatcaacgggctgcgcagggtgctggacgagct 21883695
Query: 656 gaccctggccaggactgacctggagctgcagatcgaaggcctgaaggaagagctggccta 715
|||||||| ||| | ||||||||| |||||||| |||||| || |||||||||||
Sbjct: 21883694 gaccctggtcagagccgacctggagacccagatcgagaccctgaacgaggagctggccta 21883635
Query: 716 cctgaagaagaaccacgaggagg 738
|||||||||||||||||||||||
Sbjct: 21883634 cctgaagaagaaccacgaggagg 21883612
Score = 155 bits (78), Expect = 6e-35
Identities = 138/158 (87%)
Strand = Plus / Plus
Query: 581 gttcgagacagagcaggccctgcgcctgagcgtggaggccgacatcaacggcctgcgcag 640
||||||||| |||||||||||||| |||||||||||||||||||||| || ||||||||
Sbjct: 21328325 gttcgagacggagcaggccctgcgtgtgagcgtggaggccgacatcaatgggctgcgcag 21328384
Query: 641 ggtgctggacgagctgaccctggccaggactgacctggagctgcagatcgaaggcctgaa 700
||||||||| ||||||||||||||||| | || |||||| |||||||||| ||| ||
Sbjct: 21328385 ggtgctggatgagctgaccctggccagagccgatctggagatgcagatcgagaacctcaa 21328444
Query: 701 ggaagagctggcctacctgaagaagaaccacgaggagg 738
||| |||||||||||||| ||||||||||||||||
Sbjct: 21328445 ggaggagctggcctacctccgaaagaaccacgaggagg 21328482
Score = 121 bits (61), Expect = 8e-25
Identities = 94/105 (89%)
Strand = Plus / Minus
Query: 309 ggcaacgagaagctcaccatgcagaacctcaacgaccgcctggcctcctacctggagaag 368
|||||||||||| | ||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 21785280 ggcaacgagaaggtgaccatgcagaacctcaatgaccgcctggcctcctacctggacaac 21785221
Query: 369 gtgcgcgccttggagcaggccaacggtgacctggaggtgaagatc 413
||||||||| ||||| ||||||||| ||||||||| |||||||
Sbjct: 21785220 gtgcgcgccctggaggaggccaacgccgacctggagcagaagatc 21785176
Score = 121 bits (61), Expect = 8e-25
Identities = 94/105 (89%)
Strand = Plus / Minus
Query: 309 ggcaacgagaagctcaccatgcagaacctcaacgaccgcctggcctcctacctggagaag 368
|||||||||||| | ||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 21811601 ggcaacgagaaggtgaccatgcagaacctcaatgaccgcctggcctcctacctggacaac 21811542
Query: 369 gtgcgcgccttggagcaggccaacggtgacctggaggtgaagatc 413
||||||||| ||||| ||||||||| ||||||||| |||||||
Sbjct: 21811541 gtgcgcgccctggaggaggccaacgccgacctggagcagaagatc 21811497
Score = 107 bits (54), Expect = 1e-20
Identities = 66/70 (94%)
Strand = Plus / Minus
Query: 324 accatgcagaacctcaacgaccgcctggcctcctacctggagaaggtgcgcgccttggag 383
||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 21958899 accatgcggaacctcaacgaccgcctggcctcctacctggacaaggtgcgcgccctggag 21958840
Query: 384 caggccaacg 393
|||||||||
Sbjct: 21958839 gaggccaacg 21958830
Score = 97.6 bits (49), Expect = 1e-17
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 1026 gaaagccgccctggaaggcacgctggcggaaacggagcctcgcttcggagccc 1078
||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 21539895 gaaagccgccctggaaggcacgctggcggaaacggaggctcgcttcggagccc 21539947
Score = 93.7 bits (47), Expect = 2e-16
Identities = 65/71 (91%)
Strand = Plus / Minus
Query: 668 gactgacctggagctgcagatcgaaggcctgaaggaagagctggcctacctgaagaagaa 727
||||||||||||| |||||||||| ||||||| || |||||||||||||||||||||||
Sbjct: 21444553 gactgacctggagatgcagatcgagagcctgaacgaggagctggcctacctgaagaagaa 21444494
Query: 728 ccacgaggagg 738
||| |||||||
Sbjct: 21444493 ccatgaggagg 21444483
Score = 81.8 bits (41), Expect = 7e-13
Identities = 68/77 (88%)
Strand = Plus / Minus
Query: 324 accatgcagaacctcaacgaccgcctggcctcctacctggagaaggtgcgcgccttggag 383
||||||||||||||||| ||||||||||||||||||||||| | ||||| || |||||
Sbjct: 21799553 accatgcagaacctcaatgaccgcctggcctcctacctggaccatgtgcgtgctctggag 21799494
Query: 384 caggccaacggtgacct 400
||||||||| ||||||
Sbjct: 21799493 gaggccaacgctgacct 21799477
Score = 73.8 bits (37), Expect = 2e-10
Identities = 106/129 (82%)
Strand = Plus / Minus
Query: 610 gcgtggaggccgacatcaacggcctgcgcagggtgctggacgagctgaccctggccagga 669
||||||| || ||||||| ||| |||||| ||||||||||||||||||||||| |||||
Sbjct: 21810030 gcgtggacgcggacatcagcggtctgcgccgggtgctggacgagctgaccctgtgcagga 21809971
Query: 670 ctgacctggagctgcagatcgaaggcctgaaggaagagctggcctacctgaagaagaacc 729
| ||| | ||| | ||| | || ||||| || |||||||| ||||| |||||||| |
Sbjct: 21809970 ccgacttagagattcagctggagaccctgagcgaggagctggcttacctcaagaagaatc 21809911
Query: 730 acgaggagg 738
|||||||||
Sbjct: 21809910 acgaggagg 21809902
Score = 73.8 bits (37), Expect = 2e-10
Identities = 70/81 (86%)
Strand = Plus / Minus
Query: 324 accatgcagaacctcaacgaccgcctggcctcctacctggagaaggtgcgcgccttggag 383
||||||||||||||||| |||||||||||| ||||| || ||||| | |||||||||
Sbjct: 22060713 accatgcagaacctcaatgaccgcctggccaattacctagacaaggtcagggccttggag 22060654
Query: 384 caggccaacggtgacctggag 404
||||||||| ||||||||||
Sbjct: 22060653 gaggccaacgctgacctggag 22060633
Score = 69.9 bits (35), Expect = 3e-09
Identities = 68/79 (86%)
Strand = Plus / Minus
Query: 946 cagatcagcaagacggaagtcaccgatctgcggcgcaccctccagggtctggagatcgag 1005
|||| |||||||||||| |||| || || |||| || |||||||| ||||||||||||
Sbjct: 21477208 cagaccagcaagacggagatcacggagctcaggcgaacactccagggcctggagatcgag 21477149
Query: 1006 ctgcagtctcagctcagca 1024
|||||||| ||||||||||
Sbjct: 21477148 ctgcagtcccagctcagca 21477130
Score = 69.9 bits (35), Expect = 3e-09
Identities = 107/131 (81%)
Strand = Plus / Minus
Query: 608 gagcgtggaggccgacatcaacggcctgcgcagggtgctggacgagctgaccctggccag 667
||||||||| |||||||||||||||||||| | || |||||||| ||||| || | |
Sbjct: 22059210 gagcgtggaagccgacatcaacggcctgcggaaagtcctggacgacttgaccatgactcg 22059151
Query: 668 gactgacctggagctgcagatcgaaggcctgaaggaagagctggcctacctgaagaagaa 727
| ||||| ||| ||||||| || |||| ||| |||||| ||||||||||||||||
Sbjct: 22059150 ctcggacctcgagatgcagatggagaacctggtggaggagctgacctacctgaagaagaa 22059091
Query: 728 ccacgaggagg 738
|||||||||||
Sbjct: 22059090 ccacgaggagg 22059080
Score = 65.9 bits (33), Expect = 4e-08
Identities = 60/69 (86%)
Strand = Plus / Minus
Query: 612 gtggaggccgacatcaacggcctgcgcagggtgctggacgagctgaccctggccaggact 671
|||||| | |||||||| |||||||||||| | |||||||||||||||||| || | ||
Sbjct: 21407848 gtggagtcagacatcaatggcctgcgcaggatcctggacgagctgaccctgtgcaaggct 21407789
Query: 672 gacctggag 680
|||||||||
Sbjct: 21407788 gacctggag 21407780
Score = 61.9 bits (31), Expect = 7e-07
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 976 cggcgcaccctccagggtctggagatcgagctgcagtctcagctcagcatg 1026
||||||||| | |||| |||||||||||||||||||| ||||||||||||
Sbjct: 21329939 cggcgcaccatgcaggcgctggagatcgagctgcagtcccagctcagcatg 21329989
Score = 61.9 bits (31), Expect = 7e-07
Identities = 103/127 (81%)
Strand = Plus / Minus
Query: 612 gtggaggccgacatcaacggcctgcgcagggtgctggacgagctgaccctggccaggact 671
|||||||| || | ||||||||||||| || | |||||||||||||| ||| || | ||
Sbjct: 21439706 gtggaggctgataccaacggcctgcgccggatcctggacgagctgacgctgtgcaaggct 21439647
Query: 672 gacctggagctgcagatcgaaggcctgaaggaagagctggcctacctgaagaagaaccac 731
||||||||| ||||| | || |||||| || |||||| | ||| ||||||||||||
Sbjct: 21439646 gacctggagatgcaggtggagtccctgaaagaggagctgatgtgcctcaagaagaaccac 21439587
Query: 732 gaggagg 738
|||||||
Sbjct: 21439586 gaggagg 21439580
Score = 60.0 bits (30), Expect = 3e-06
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 627 aacggcctgcgcagggtgctggacgagctgaccctggccaggactgacctggag 680
||||||||||||||| | |||||||||||||||||| || | |||||||||||
Sbjct: 21366209 aacggcctgcgcaggatcctggacgagctgaccctgtgcaaggctgacctggag 21366156
Score = 60.0 bits (30), Expect = 3e-06
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 309 ggcaacgagaagctcaccatgcagaacctcaacgaccgcctggcctcctacctggagaag 368
|||||||||||| ||||||||| ||| |||||||| |||||| |||||||||||||
Sbjct: 21462897 ggcaacgagaaggagaccatgcagttcctgaacgaccggctggccaactacctggagaag 21462838
Query: 369 gtgcgc 374
||||||
Sbjct: 21462837 gtgcgc 21462832
Score = 60.0 bits (30), Expect = 3e-06
Identities = 66/78 (84%)
Strand = Plus / Minus
Query: 327 atgcagaacctcaacgaccgcctggcctcctacctggagaaggtgcgcgccttggagcag 386
|||||||| ||||| ||||||||||| ||||||||||| || ||||| || ||||| ||
Sbjct: 21829560 atgcagaatctcaatgaccgcctggcatcctacctggataacgtgcgagctctggaggag 21829501
Query: 387 gccaacggtgacctggag 404
|| || | ||||||||||
Sbjct: 21829500 gcaaatgctgacctggag 21829483
>Sscrofa_Chr05
|| Length = 111506441
Score = 63.9 bits (32), Expect = 2e-07
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 324 accatgcagaacctcaacgaccgcctggcctcctacctggagaaggtg 371
||||||||| |||| || ||||||||||||||||||||||||| ||||
Sbjct: 18726338 accatgcaggacctgaatgaccgcctggcctcctacctggagagggtg 18726385
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 20,352,515
Number of extensions: 184
Number of successful extensions: 184
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 38
Length of query: 1078
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1057
Effective length of database: 2,808,413,156
Effective search space: 2968492705892
Effective search space used: 2968492705892
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)