Animal-Genome cDNA 20110601C-001867

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001867
         (1125 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001015600.1| keratin, type I cytoskeletal 19 [Bos taurus].     495   e-140
Alignment   gi|NP_001098792.1| keratin, type I cytoskeletal 17 [Bos taurus].     384   e-106
Alignment   gi|NP_001124219.1| keratin, type I cytoskeletal 13 [Bos taurus].     381   e-106
Alignment   gi|NP_001160047.1| keratin, type I cytoskeletal 14 [Bos taurus].     380   e-106
Alignment   gi|XP_002696036.1| PREDICTED: keratin 13-like [Bos taurus].          362   e-100
Alignment   gi|XP_002702249.1| PREDICTED: keratin 13-like [Bos taurus].          362   e-100
Alignment   gi|XP_002696056.1| PREDICTED: keratin 12-like [Bos taurus].          337   1e-92
Alignment   gi|XP_001255462.1| PREDICTED: keratin 12-like [Bos taurus].          337   1e-92
Alignment   gi|XP_001788780.1| PREDICTED: keratin 13-like isoform 2 [Bos ta...   322   5e-88
Alignment   gi|NP_776802.1| keratin, type I cytoskeletal 10 [Bos taurus].        320   1e-87

>ref|NP_001015600.1| keratin, type I cytoskeletal 19 [Bos taurus].
          Length = 399

 Score =  495 bits (1275), Expect = e-140
 Identities = 266/339 (78%), Positives = 277/339 (81%)
 Frame = +3

Query: 108  FGGLGGGSVRFSAGGAFRAPSIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 287
            FGG+GGGS+RF AGGAFRAPSIH                                     
Sbjct: 15   FGGMGGGSMRFGAGGAFRAPSIHGGSGGRGVSVSSARFVSSSSGGYGGGYGGALATSDGL 74

Query: 288  XXXXXXXXNEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHY 467
                    NEKLTMQNLNDRLASYLEKVRALE+ANGDLEVKIRDWYQKQGPGPARDYSHY
Sbjct: 75   LAG-----NEKLTMQNLNDRLASYLEKVRALEEANGDLEVKIRDWYQKQGPGPARDYSHY 129

Query: 468  FKTIEDLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVL 647
            FKTIEDLRD+ILGATIENSKIVLQIDNARLAADDFRTKFETEQALR+SVEADINGLRRVL
Sbjct: 130  FKTIEDLRDQILGATIENSKIVLQIDNARLAADDFRTKFETEQALRMSVEADINGLRRVL 189

Query: 648  DELTLARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILS 827
            DELTLARTDLE+QIEGLKEELAYLKKNHEEE+S LKGQVGGQVSVEVDSAPGIDLAKILS
Sbjct: 190  DELTLARTDLEMQIEGLKEELAYLKKNHEEEMSVLKGQVGGQVSVEVDSAPGIDLAKILS 249

Query: 828  DMRSQYEVMAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIEL 1007
            DMRSQYEV+AE+NRKDAEAWF S+TEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIEL
Sbjct: 250  DMRSQYEVIAEKNRKDAEAWFISQTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIEL 309

Query: 1008 QSQLNMKXXXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
            QSQL+MK            RFGAQLAQIQALISGIE  L
Sbjct: 310  QSQLSMKAALEGTLAETEARFGAQLAQIQALISGIEAQL 348


>ref|NP_001098792.1| keratin, type I cytoskeletal 17 [Bos taurus].
          Length = 441

 Score =  384 bits (985), Expect = e-106
 Identities = 193/270 (71%), Positives = 231/270 (85%)
 Frame = +3

Query: 315  EKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLRD 494
            EK TMQNLNDRLASYL+KVRALE+AN +LE+KIRDWYQKQ PGPA DYS YFKTIEDLR+
Sbjct: 92   EKATMQNLNDRLASYLDKVRALEEANTELELKIRDWYQKQAPGPAPDYSSYFKTIEDLRN 151

Query: 495  KILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLARTD 674
            KI  AT++N+ ++LQIDNARLAADDFRTKFETEQALR+SVEADINGLRRVLDELTLAR D
Sbjct: 152  KIHTATVDNANLLLQIDNARLAADDFRTKFETEQALRVSVEADINGLRRVLDELTLARAD 211

Query: 675  LELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEVM 854
            LE+QIE LKEELAYL+KNHEEE+ AL+GQVGG+++VE+D+APG+DL++IL++MR QYE M
Sbjct: 212  LEMQIENLKEELAYLRKNHEEEMKALRGQVGGEINVEMDAAPGVDLSRILNEMRDQYEKM 271

Query: 855  AEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKXX 1034
            AE+NRKDAE WF S+TEELNREVA ++E +Q  K+E+++LRRTLQ LEIELQSQL+MK  
Sbjct: 272  AEKNRKDAEDWFFSKTEELNREVATNSELVQSGKSEISELRRTLQALEIELQSQLSMKAS 331

Query: 1035 XXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
                      R+  QL+QIQ LI  +E  L
Sbjct: 332  LEGSLAETENRYCMQLSQIQGLIGSVEEQL 361


>ref|NP_001124219.1| keratin, type I cytoskeletal 13 [Bos taurus].
          Length = 453

 Score =  381 bits (978), Expect = e-106
 Identities = 193/272 (70%), Positives = 224/272 (82%), Gaps = 1/272 (0%)
 Frame = +3

Query: 312  NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGP-GPARDYSHYFKTIEDL 488
            NEK+TMQNLNDRLASYLEKVRALE+AN DLEVKIRDWYQ+Q P  P RDYS YFKTI++L
Sbjct: 102  NEKITMQNLNDRLASYLEKVRALEEANADLEVKIRDWYQRQSPTSPERDYSPYFKTIDEL 161

Query: 489  RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 668
            RDKIL A I+NS+++L+IDNARLAADDFR K E E ALR SVEADINGLRRVLDELTL +
Sbjct: 162  RDKILAAAIKNSQVILEIDNARLAADDFRLKHENEMALRQSVEADINGLRRVLDELTLTK 221

Query: 669  TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 848
            TDLE+QIE L EELAYLKKNHEEE+     Q+ GQV+VE+D+AP +DL ++LS+MR QYE
Sbjct: 222  TDLEMQIESLNEELAYLKKNHEEEMKEFSNQLAGQVNVEMDAAPAVDLTRVLSEMREQYE 281

Query: 849  VMAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMK 1028
             MAE+NR+DAEAWF S+TEELN+EVA +TE +Q SKTE+TDLRRT+QGLEIELQSQL+MK
Sbjct: 282  AMAEKNRRDAEAWFFSKTEELNKEVASNTEMIQTSKTEITDLRRTIQGLEIELQSQLSMK 341

Query: 1029 XXXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
                        R+ AQL QIQ LIS IE  L
Sbjct: 342  AGLESTLAETECRYAAQLQQIQGLISSIEAQL 373


>ref|NP_001160047.1| keratin, type I cytoskeletal 14 [Bos taurus].
          Length = 477

 Score =  380 bits (977), Expect = e-106
 Identities = 193/271 (71%), Positives = 231/271 (85%)
 Frame = +3

Query: 312  NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLR 491
            +EK+TMQNLNDRLASYL+KVRALE+AN DLEVKIRDWYQ+Q P   +DYS YFKTIEDLR
Sbjct: 120  SEKVTMQNLNDRLASYLDKVRALEEANADLEVKIRDWYQRQRPAEIKDYSPYFKTIEDLR 179

Query: 492  DKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLART 671
            +KIL AT++N+ +VLQIDNARLAADDFRTK+ETE  LRLSVEADINGLRRVLDELTLAR 
Sbjct: 180  NKILTATVDNANVVLQIDNARLAADDFRTKYETELNLRLSVEADINGLRRVLDELTLARA 239

Query: 672  DLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEV 851
            DLE+QIE LKEELAYL+KNHEEE+++L+GQVGG V+VE+D+APG+DL++IL++MR QYE 
Sbjct: 240  DLEMQIESLKEELAYLRKNHEEEMNSLRGQVGGDVNVEMDAAPGVDLSRILNEMRDQYEK 299

Query: 852  MAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKX 1031
            MAE+NRKDAE WF S+TEELNREVA ++E +Q  K+E+++LRRTLQ LEIELQSQL+MK 
Sbjct: 300  MAEKNRKDAEDWFFSKTEELNREVATNSELVQSGKSEISELRRTLQNLEIELQSQLSMKA 359

Query: 1032 XXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
                       R+  QLAQIQ LIS +E  L
Sbjct: 360  SLENSLEETKGRYCMQLAQIQELISSVEEQL 390


>ref|XP_002696036.1| PREDICTED: keratin 13-like [Bos taurus].
          Length = 434

 Score =  362 bits (929), Expect = e-100
 Identities = 186/272 (68%), Positives = 218/272 (80%), Gaps = 1/272 (0%)
 Frame = +3

Query: 312  NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGP-GPARDYSHYFKTIEDL 488
            NEK+TMQNLNDRLASYLEKVRALE+AN DLEVKIRDW+ KQ P  P RDYS YFKTI++L
Sbjct: 99   NEKITMQNLNDRLASYLEKVRALEEANADLEVKIRDWHLKQTPTSPERDYSPYFKTIDEL 158

Query: 489  RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 668
            RDKIL ATI+N++I+L+IDNARLAADDFR K+E E  LR SVEADINGLRRVLDELTL +
Sbjct: 159  RDKILAATIDNNRIILEIDNARLAADDFRLKYENELTLRQSVEADINGLRRVLDELTLTK 218

Query: 669  TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 848
            TDLE+QIE L EELAYLKKNHEEE+     Q+ GQV+VE+D+ PGIDL ++L++MR QYE
Sbjct: 219  TDLEMQIESLNEELAYLKKNHEEEMKEFSKQMVGQVNVEMDATPGIDLTRVLAEMREQYE 278

Query: 849  VMAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMK 1028
             MAE+NR+DAE WF S++ ELN+EV   T  +Q SKTE+T+LRRTLQGLEIELQSQL+MK
Sbjct: 279  AMAEKNRRDAEEWFHSKSAELNKEVTSSTALIQTSKTEITELRRTLQGLEIELQSQLSMK 338

Query: 1029 XXXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
                        R+  QL QIQ LIS IE  L
Sbjct: 339  AGLESTLAETECRYALQLQQIQGLISSIEAQL 370


>ref|XP_002702249.1| PREDICTED: keratin 13-like [Bos taurus].
          Length = 434

 Score =  362 bits (929), Expect = e-100
 Identities = 186/272 (68%), Positives = 218/272 (80%), Gaps = 1/272 (0%)
 Frame = +3

Query: 312  NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGP-GPARDYSHYFKTIEDL 488
            NEK+TMQNLNDRLASYLEKVRALE+AN DLEVKIRDW+ KQ P  P RDYS YFKTI++L
Sbjct: 99   NEKITMQNLNDRLASYLEKVRALEEANADLEVKIRDWHLKQTPTSPERDYSPYFKTIDEL 158

Query: 489  RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 668
            RDKIL ATI+N++I+L+IDNARLAADDFR K+E E  LR SVEADINGLRRVLDELTL +
Sbjct: 159  RDKILAATIDNNRIILEIDNARLAADDFRLKYENELTLRQSVEADINGLRRVLDELTLTK 218

Query: 669  TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 848
            TDLE+QIE L EELAYLKKNHEEE+     Q+ GQV+VE+D+ PGIDL ++L++MR QYE
Sbjct: 219  TDLEMQIESLNEELAYLKKNHEEEMKEFSKQMVGQVNVEMDATPGIDLTRVLAEMREQYE 278

Query: 849  VMAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMK 1028
             MAE+NR+DAE WF S++ ELN+EV   T  +Q SKTE+T+LRRTLQGLEIELQSQL+MK
Sbjct: 279  AMAEKNRRDAEEWFHSKSAELNKEVTSSTALIQTSKTEITELRRTLQGLEIELQSQLSMK 338

Query: 1029 XXXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
                        R+  QL QIQ LIS IE  L
Sbjct: 339  AGLESTLAETECRYALQLQQIQGLISSIEAQL 370


>ref|XP_002696056.1| PREDICTED: keratin 12-like [Bos taurus].
          Length = 532

 Score =  337 bits (864), Expect = 1e-92
 Identities = 175/276 (63%), Positives = 213/276 (77%), Gaps = 5/276 (1%)
 Frame = +3

Query: 312  NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQG-----PGPARDYSHYFKT 476
            +EK TM+NLNDRLASYL+KVRALE+AN DLE KIR+WY+ +G     PG   DYS Y+  
Sbjct: 161  SEKETMKNLNDRLASYLDKVRALEEANTDLETKIREWYETRGSGTGDPGSQNDYSKYYPL 220

Query: 477  IEDLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDEL 656
            IEDLR+KI+ A IEN++++LQIDNARLAADDFR K+E E AL  +VEADINGLRRVLDEL
Sbjct: 221  IEDLRNKIISANIENAQLILQIDNARLAADDFRMKYENELALCQNVEADINGLRRVLDEL 280

Query: 657  TLARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMR 836
            TLAR DLE QIE L EELAYLKKNHEEE+ + +    GQVSVE+D+APG+DL ++L+DMR
Sbjct: 281  TLARADLETQIETLNEELAYLKKNHEEELQSCRAGGPGQVSVEMDAAPGVDLTRLLNDMR 340

Query: 837  SQYEVMAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQ 1016
            +QYE +AEQNRKDAEAWF  ++ EL +E++ +TEQLQ SK+EVTDLRR LQ LEIELQSQ
Sbjct: 341  AQYETIAEQNRKDAEAWFIEKSGELRKEISSNTEQLQSSKSEVTDLRRALQNLEIELQSQ 400

Query: 1017 LNMKXXXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
            L MK             +  QL+Q+Q LI  +E  L
Sbjct: 401  LAMKKSLEDSLAETEGDYCGQLSQVQQLIGSLEEQL 436


>ref|XP_001255462.1| PREDICTED: keratin 12-like [Bos taurus].
          Length = 532

 Score =  337 bits (864), Expect = 1e-92
 Identities = 175/276 (63%), Positives = 213/276 (77%), Gaps = 5/276 (1%)
 Frame = +3

Query: 312  NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQG-----PGPARDYSHYFKT 476
            +EK TM+NLNDRLASYL+KVRALE+AN DLE KIR+WY+ +G     PG   DYS Y+  
Sbjct: 161  SEKETMKNLNDRLASYLDKVRALEEANTDLETKIREWYETRGSGTGDPGSQNDYSKYYPL 220

Query: 477  IEDLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDEL 656
            IEDLR+KI+ A IEN++++LQIDNARLAADDFR K+E E AL  +VEADINGLRRVLDEL
Sbjct: 221  IEDLRNKIISANIENAQLILQIDNARLAADDFRMKYENELALCQNVEADINGLRRVLDEL 280

Query: 657  TLARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMR 836
            TLAR DLE QIE L EELAYLKKNHEEE+ + +    GQVSVE+D+APG+DL ++L+DMR
Sbjct: 281  TLARADLETQIETLNEELAYLKKNHEEELQSCRAGGPGQVSVEMDAAPGVDLTRLLNDMR 340

Query: 837  SQYEVMAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQ 1016
            +QYE +AEQNRKDAEAWF  ++ EL +E++ +TEQLQ SK+EVTDLRR LQ LEIELQSQ
Sbjct: 341  AQYETIAEQNRKDAEAWFIEKSGELRKEISSNTEQLQSSKSEVTDLRRALQNLEIELQSQ 400

Query: 1017 LNMKXXXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
            L MK             +  QL+Q+Q LI  +E  L
Sbjct: 401  LAMKKSLEDSLAETEGDYCGQLSQVQQLIGSLEEQL 436


>ref|XP_001788780.1| PREDICTED: keratin 13-like isoform 2 [Bos taurus].
          Length = 566

 Score =  322 bits (824), Expect = 5e-88
 Identities = 162/274 (59%), Positives = 213/274 (77%), Gaps = 3/274 (1%)
 Frame = +3

Query: 312  NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPG---PARDYSHYFKTIE 482
            NEK+TMQNLNDRLASYL+KVRALE++N +LEVKI++WY+K G       RDYS Y++TI+
Sbjct: 126  NEKITMQNLNDRLASYLDKVRALEESNYELEVKIKEWYEKYGNSRQREPRDYSKYYQTID 185

Query: 483  DLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTL 662
            DL+++I   T +N+ I++Q+DNARLAADDFR K+E E  LR SVEADINGLRRVLDELTL
Sbjct: 186  DLKNQIFNLTTDNANILIQVDNARLAADDFRLKYENEVTLRQSVEADINGLRRVLDELTL 245

Query: 663  ARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQ 842
             +TDLE+QIE L EELAYLKKNHEEE+  L+    G V+VE+++APG+DL ++L++MRSQ
Sbjct: 246  TKTDLEMQIESLTEELAYLKKNHEEEMRDLQNVSTGDVNVEMNAAPGVDLTELLNNMRSQ 305

Query: 843  YEVMAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLN 1022
            YE +AE+NR+DAEAWF  +++EL  E+  + EQ+   K+E+T+LRRT+QGLEIELQSQL 
Sbjct: 306  YEQLAEKNRRDAEAWFNEKSKELTTEINSNLEQVSSHKSEITELRRTIQGLEIELQSQLA 365

Query: 1023 MKXXXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
            +K            R+  QL+QIQ+ IS +E  L
Sbjct: 366  LKQSLEASLAETEGRYCVQLSQIQSQISSLEEQL 399


>ref|NP_776802.1| keratin, type I cytoskeletal 10 [Bos taurus].
          Length = 526

 Score =  320 bits (821), Expect = 1e-87
 Identities = 161/274 (58%), Positives = 213/274 (77%), Gaps = 3/274 (1%)
 Frame = +3

Query: 312  NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPG---PARDYSHYFKTIE 482
            N+K+TMQNLNDRLASYL+KVRALE++N +LEVKI++WY+K G       RDYS Y++TI+
Sbjct: 126  NQKITMQNLNDRLASYLDKVRALEESNYELEVKIKEWYEKYGNSRQREPRDYSKYYQTID 185

Query: 483  DLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTL 662
            DL+++I   T +N+ I++Q+DNARLAADDFR K+E E  LR SVEADINGLRRVLDELTL
Sbjct: 186  DLKNQIFNLTTDNANILIQVDNARLAADDFRLKYENEVTLRQSVEADINGLRRVLDELTL 245

Query: 663  ARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQ 842
             +TDLE+QIE L EELAYLKKNHEEE+  L+    G V+VE+++APG+DL ++L++MRSQ
Sbjct: 246  TKTDLEMQIESLTEELAYLKKNHEEEMRDLQNVSTGDVNVEMNAAPGVDLTELLNNMRSQ 305

Query: 843  YEVMAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLN 1022
            YE +AE+NR+DAEAWF  +++EL  E+  + EQ+   K+E+T+LRRT+QGLEIELQSQL 
Sbjct: 306  YEQLAEKNRRDAEAWFNEKSKELTTEINSNLEQVSSHKSEITELRRTIQGLEIELQSQLA 365

Query: 1023 MKXXXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
            +K            R+  QL+QIQ+ IS +E  L
Sbjct: 366  LKQSLEASLAETEGRYCVQLSQIQSQISSLEEQL 399


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,327,639
Number of extensions: 1092443
Number of successful extensions: 7451
Number of sequences better than 1.0e-05: 102
Number of HSP's gapped: 7173
Number of HSP's successfully gapped: 102
Length of query: 375
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 271
Effective length of database: 14,240,222
Effective search space: 3859100162
Effective search space used: 3859100162
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001867
         (1125 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_548099.2| PREDICTED: similar to keratin 17n [Canis famili...   400   e-111
Alignment   gi|XP_548100.1| PREDICTED: similar to type I keratin KA17 isofo...   388   e-108
Alignment   gi|XP_862399.1| PREDICTED: similar to keratin 13 isoform a isof...   384   e-106
Alignment   gi|XP_862372.1| PREDICTED: similar to keratin 13 isoform a isof...   384   e-106
Alignment   gi|XP_548101.2| PREDICTED: similar to Keratin, type I cytoskele...   382   e-106
Alignment   gi|XP_862344.1| PREDICTED: similar to keratin 13 isoform a isof...   361   e-100
Alignment   gi|XP_548106.2| PREDICTED: similar to keratin 13 isoform a isof...   361   e-100
Alignment   gi|XP_850765.1| PREDICTED: similar to keratin 13 isoform a isof...   360   2e-99
Alignment   gi|XP_861773.1| PREDICTED: similar to type I keratin KA17 isofo...   342   3e-94
Alignment   gi|NP_001075890.1| keratin 12 [Canis lupus familiaris].              325   4e-89

>ref|XP_548099.2| PREDICTED: similar to keratin 17n [Canis familiaris].
          Length = 469

 Score =  400 bits (1027), Expect = e-111
 Identities = 202/271 (74%), Positives = 236/271 (87%)
 Frame = +3

Query: 312  NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLR 491
            +EK TMQNLNDRLASYL+KVRALE+AN DLEVKI DWY+KQGPGPARDYSH+FKTIE+LR
Sbjct: 110  SEKETMQNLNDRLASYLDKVRALEEANADLEVKIHDWYKKQGPGPARDYSHFFKTIEELR 169

Query: 492  DKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLART 671
            +KIL ATI+N+ +VLQIDNARLAADDFRTK+ETE  LR+SVEAD NGLRRVLDELTLAR 
Sbjct: 170  NKILAATIDNASLVLQIDNARLAADDFRTKYETELNLRMSVEADTNGLRRVLDELTLARA 229

Query: 672  DLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEV 851
            DLE+QIE LKEELAYLKKNHEEE++AL+GQVGG VSVE+D+APG+DL++IL++MR QYE 
Sbjct: 230  DLEMQIESLKEELAYLKKNHEEEMNALRGQVGGDVSVEMDAAPGVDLSRILNEMRDQYEK 289

Query: 852  MAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKX 1031
            MAE+NRKDAE WF S+TEELNREVA +TE LQ S+TE+T+LRR++Q LEIELQSQL+MK 
Sbjct: 290  MAEKNRKDAEDWFFSKTEELNREVATNTEALQSSRTEITELRRSVQNLEIELQSQLSMKA 349

Query: 1032 XXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
                       R+GAQLAQ+Q LIS IE  L
Sbjct: 350  SLEGSLAETEARYGAQLAQLQGLISSIEQQL 380


>ref|XP_548100.1| PREDICTED: similar to type I keratin KA17 isoform 1 [Canis
            familiaris].
          Length = 433

 Score =  388 bits (997), Expect = e-108
 Identities = 193/270 (71%), Positives = 234/270 (86%)
 Frame = +3

Query: 315  EKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLRD 494
            EK TMQNLNDRLASYL+KVRALE+AN +LEVKIRDWYQKQ PGPARDYSHY++TIEDL++
Sbjct: 84   EKATMQNLNDRLASYLDKVRALEEANTELEVKIRDWYQKQAPGPARDYSHYYQTIEDLKN 143

Query: 495  KILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLARTD 674
            KIL AT++N+ I+LQIDNARLAADDFRTKFETEQALR+SVEAD NGLRRVLDELTL+R D
Sbjct: 144  KILTATVDNANILLQIDNARLAADDFRTKFETEQALRVSVEADTNGLRRVLDELTLSRAD 203

Query: 675  LELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEVM 854
            LE+QIE LKEELAYL+KNHEEE++AL+GQVGG+++VE+D+APG+DL++ILS+MR QYE M
Sbjct: 204  LEMQIENLKEELAYLRKNHEEEMNALRGQVGGEINVEMDAAPGVDLSRILSEMRDQYEKM 263

Query: 855  AEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKXX 1034
            AE+NRKDAE WF S+TEELNREVA ++E +Q  K+E+++LRRT+Q LEIELQSQL+MK  
Sbjct: 264  AEKNRKDAEDWFFSKTEELNREVATNSELVQSGKSEISELRRTVQALEIELQSQLSMKAS 323

Query: 1035 XXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
                      R+  QL+QIQ LI  +E  L
Sbjct: 324  LEGSLAETENRYCVQLSQIQGLIGSVEEQL 353


>ref|XP_862399.1| PREDICTED: similar to keratin 13 isoform a isoform 7 [Canis
            familiaris].
          Length = 807

 Score =  384 bits (985), Expect = e-106
 Identities = 192/272 (70%), Positives = 225/272 (82%), Gaps = 1/272 (0%)
 Frame = +3

Query: 312  NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPG-PARDYSHYFKTIEDL 488
            NEK+TMQNLNDRLASYL+KV ALE+ANGDLEVKIRDWYQKQ P  P RDYS YFKTIE+L
Sbjct: 102  NEKITMQNLNDRLASYLDKVHALEEANGDLEVKIRDWYQKQSPSSPERDYSPYFKTIEEL 161

Query: 489  RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 668
            RDKIL ATI+NS+++L+IDNARLAADDFR K+E E  LR  VEADINGLRRVLDELTLA+
Sbjct: 162  RDKILAATIDNSRVILEIDNARLAADDFRLKYENELTLRQGVEADINGLRRVLDELTLAK 221

Query: 669  TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 848
             DLE+QIEGL EELAYLKKNHEEE+     Q+ GQV+VE+D+APG+DL ++L++MR QYE
Sbjct: 222  ADLEMQIEGLNEELAYLKKNHEEEMKEFSSQLAGQVNVEMDAAPGVDLTRVLAEMREQYE 281

Query: 849  VMAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMK 1028
             MAE+NR+DAEAWF S+TEELN+EVA +TE +Q SKTE+TDLRRT+QGLEIELQSQL+MK
Sbjct: 282  AMAEKNRRDAEAWFFSKTEELNKEVASNTEMIQTSKTEITDLRRTMQGLEIELQSQLSMK 341

Query: 1029 XXXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
                        R+  QL QIQ LIS +E  L
Sbjct: 342  AGLESSLAETECRYATQLQQIQGLISSLEAQL 373



 Score =  361 bits (927), Expect = e-100
 Identities = 183/272 (67%), Positives = 221/272 (81%), Gaps = 1/272 (0%)
 Frame = +3

Query: 312  NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPG-PARDYSHYFKTIEDL 488
            NEK+TMQNLNDRLASYL+KVRALE+AN +LEVKIRDW+ KQ P  P RDYS Y+KTIE+L
Sbjct: 495  NEKITMQNLNDRLASYLDKVRALEEANTELEVKIRDWHLKQSPSSPERDYSPYYKTIEEL 554

Query: 489  RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 668
            RDKIL ATI+N++++L+IDNARLAADDFR K+E E  LR SVEADINGLRRVLDELTL++
Sbjct: 555  RDKILAATIDNNRVILEIDNARLAADDFRLKYENELTLRQSVEADINGLRRVLDELTLSK 614

Query: 669  TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 848
            TDLE+QIE L EELAYLKKNHEEE+     Q+ GQV+VE+D+ PGIDL ++L++MR QYE
Sbjct: 615  TDLEMQIESLNEELAYLKKNHEEEMKEFSNQMVGQVNVEMDATPGIDLTRVLAEMREQYE 674

Query: 849  VMAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMK 1028
             MAE+NR+DAE WF S++ ELN+EV+ +T  +Q SKTE+T+LRRTLQGLEIELQSQL+MK
Sbjct: 675  AMAEKNRRDAEEWFHSKSAELNKEVSTNTAMIQTSKTEITELRRTLQGLEIELQSQLSMK 734

Query: 1029 XXXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
                        R+  QL QIQ LIS IE  L
Sbjct: 735  AGLESTLADTECRYALQLQQIQGLISSIEAQL 766


>ref|XP_862372.1| PREDICTED: similar to keratin 13 isoform a isoform 6 [Canis
            familiaris].
          Length = 811

 Score =  384 bits (985), Expect = e-106
 Identities = 192/272 (70%), Positives = 225/272 (82%), Gaps = 1/272 (0%)
 Frame = +3

Query: 312  NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPG-PARDYSHYFKTIEDL 488
            NEK+TMQNLNDRLASYL+KV ALE+ANGDLEVKIRDWYQKQ P  P RDYS YFKTIE+L
Sbjct: 106  NEKITMQNLNDRLASYLDKVHALEEANGDLEVKIRDWYQKQSPSSPERDYSPYFKTIEEL 165

Query: 489  RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 668
            RDKIL ATI+NS+++L+IDNARLAADDFR K+E E  LR  VEADINGLRRVLDELTLA+
Sbjct: 166  RDKILAATIDNSRVILEIDNARLAADDFRLKYENELTLRQGVEADINGLRRVLDELTLAK 225

Query: 669  TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 848
             DLE+QIEGL EELAYLKKNHEEE+     Q+ GQV+VE+D+APG+DL ++L++MR QYE
Sbjct: 226  ADLEMQIEGLNEELAYLKKNHEEEMKEFSSQLAGQVNVEMDAAPGVDLTRVLAEMREQYE 285

Query: 849  VMAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMK 1028
             MAE+NR+DAEAWF S+TEELN+EVA +TE +Q SKTE+TDLRRT+QGLEIELQSQL+MK
Sbjct: 286  AMAEKNRRDAEAWFFSKTEELNKEVASNTEMIQTSKTEITDLRRTMQGLEIELQSQLSMK 345

Query: 1029 XXXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
                        R+  QL QIQ LIS +E  L
Sbjct: 346  AGLESSLAETECRYATQLQQIQGLISSLEAQL 377



 Score =  361 bits (927), Expect = e-100
 Identities = 183/272 (67%), Positives = 221/272 (81%), Gaps = 1/272 (0%)
 Frame = +3

Query: 312  NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPG-PARDYSHYFKTIEDL 488
            NEK+TMQNLNDRLASYL+KVRALE+AN +LEVKIRDW+ KQ P  P RDYS Y+KTIE+L
Sbjct: 499  NEKITMQNLNDRLASYLDKVRALEEANTELEVKIRDWHLKQSPSSPERDYSPYYKTIEEL 558

Query: 489  RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 668
            RDKIL ATI+N++++L+IDNARLAADDFR K+E E  LR SVEADINGLRRVLDELTL++
Sbjct: 559  RDKILAATIDNNRVILEIDNARLAADDFRLKYENELTLRQSVEADINGLRRVLDELTLSK 618

Query: 669  TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 848
            TDLE+QIE L EELAYLKKNHEEE+     Q+ GQV+VE+D+ PGIDL ++L++MR QYE
Sbjct: 619  TDLEMQIESLNEELAYLKKNHEEEMKEFSNQMVGQVNVEMDATPGIDLTRVLAEMREQYE 678

Query: 849  VMAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMK 1028
             MAE+NR+DAE WF S++ ELN+EV+ +T  +Q SKTE+T+LRRTLQGLEIELQSQL+MK
Sbjct: 679  AMAEKNRRDAEEWFHSKSAELNKEVSTNTAMIQTSKTEITELRRTLQGLEIELQSQLSMK 738

Query: 1029 XXXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
                        R+  QL QIQ LIS IE  L
Sbjct: 739  AGLESTLADTECRYALQLQQIQGLISSIEAQL 770


>ref|XP_548101.2| PREDICTED: similar to Keratin, type I cytoskeletal 16 (Cytokeratin
            16) (K16) (CK 16) [Canis familiaris].
          Length = 477

 Score =  382 bits (980), Expect = e-106
 Identities = 194/271 (71%), Positives = 230/271 (84%)
 Frame = +3

Query: 312  NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLR 491
            NEKLTMQNLNDRLASYL+KVRALE+AN +LEVKIRDWYQ+Q P  A+DYS YFKTIEDLR
Sbjct: 117  NEKLTMQNLNDRLASYLDKVRALEEANTELEVKIRDWYQRQRPSEAKDYSPYFKTIEDLR 176

Query: 492  DKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLART 671
            +KI+ ATIEN++ +LQIDNARLAADDFRTK+E E  LR SVEADINGLRRVLDELTL+RT
Sbjct: 177  NKIITATIENAQPILQIDNARLAADDFRTKYEHELTLRQSVEADINGLRRVLDELTLSRT 236

Query: 672  DLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEV 851
            DLE+QIEGLKEELAYL+KNHEEE+ AL+GQ GG VSVE+D+APG+DL++IL++MR QYE 
Sbjct: 237  DLEMQIEGLKEELAYLRKNHEEEMLALRGQTGGDVSVEMDAAPGVDLSRILNEMRDQYEQ 296

Query: 852  MAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKX 1031
            MAE+NR+DAEAWF S+TEELN+EV  ++E LQ  ++EVT+LRRTLQGLEIELQSQL+MK 
Sbjct: 297  MAEKNRRDAEAWFLSKTEELNKEVVSNSELLQSGRSEVTELRRTLQGLEIELQSQLSMKA 356

Query: 1032 XXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
                       R+  QL+QIQ LI  +E  L
Sbjct: 357  SLESSLEETKGRYCMQLSQIQGLIGNVEEQL 387


>ref|XP_862344.1| PREDICTED: similar to keratin 13 isoform a isoform 5 [Canis
            familiaris].
          Length = 692

 Score =  361 bits (927), Expect = e-100
 Identities = 183/272 (67%), Positives = 221/272 (81%), Gaps = 1/272 (0%)
 Frame = +3

Query: 312  NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPG-PARDYSHYFKTIEDL 488
            NEK+TMQNLNDRLASYL+KVRALE+AN +LEVKIRDW+ KQ P  P RDYS Y+KTIE+L
Sbjct: 380  NEKITMQNLNDRLASYLDKVRALEEANTELEVKIRDWHLKQSPSSPERDYSPYYKTIEEL 439

Query: 489  RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 668
            RDKIL ATI+N++++L+IDNARLAADDFR K+E E  LR SVEADINGLRRVLDELTL++
Sbjct: 440  RDKILAATIDNNRVILEIDNARLAADDFRLKYENELTLRQSVEADINGLRRVLDELTLSK 499

Query: 669  TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 848
            TDLE+QIE L EELAYLKKNHEEE+     Q+ GQV+VE+D+ PGIDL ++L++MR QYE
Sbjct: 500  TDLEMQIESLNEELAYLKKNHEEEMKEFSNQMVGQVNVEMDATPGIDLTRVLAEMREQYE 559

Query: 849  VMAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMK 1028
             MAE+NR+DAE WF S++ ELN+EV+ +T  +Q SKTE+T+LRRTLQGLEIELQSQL+MK
Sbjct: 560  AMAEKNRRDAEEWFHSKSAELNKEVSTNTAMIQTSKTEITELRRTLQGLEIELQSQLSMK 619

Query: 1029 XXXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
                        R+  QL QIQ LIS IE  L
Sbjct: 620  AGLESTLADTECRYALQLQQIQGLISSIEAQL 651



 Score =  342 bits (877), Expect(2) = 9e-95
 Identities = 172/252 (68%), Positives = 202/252 (80%), Gaps = 1/252 (0%)
 Frame = +3

Query: 372  RALEQANGDLEVKIRDWYQKQGPG-PARDYSHYFKTIEDLRDKILGATIENSKIVLQIDN 548
            R    ANGDLEVKIRDWYQKQ P  P RDYS YFKTIE+LRDKIL ATI+NS+++L+IDN
Sbjct: 7    RTSTTANGDLEVKIRDWYQKQSPSSPERDYSPYFKTIEELRDKILAATIDNSRVILEIDN 66

Query: 549  ARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLARTDLELQIEGLKEELAYLKKN 728
            ARLAADDFR K+E E  LR  VEADINGLRRVLDELTLA+ DLE+QIEGL EELAYLKKN
Sbjct: 67   ARLAADDFRLKYENELTLRQGVEADINGLRRVLDELTLAKADLEMQIEGLNEELAYLKKN 126

Query: 729  HEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEVMAEQNRKDAEAWFTSRTEE 908
            HEEE+     Q+ GQV+VE+D+APG+DL ++L++MR QYE MAE+NR+DAEAWF S+TEE
Sbjct: 127  HEEEMKEFSSQLAGQVNVEMDAAPGVDLTRVLAEMREQYEAMAEKNRRDAEAWFFSKTEE 186

Query: 909  LNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKXXXXXXXXXXXXRFGAQLAQ 1088
            LN+EVA +TE +Q SKTE+TDLRRT+QGLEIELQSQL+MK            R+  QL Q
Sbjct: 187  LNKEVASNTEMIQTSKTEITDLRRTMQGLEIELQSQLSMKAGLESSLAETECRYATQLQQ 246

Query: 1089 IQALISGIEPXL 1124
            IQ LIS +E  L
Sbjct: 247  IQGLISSLEAQL 258



 Score = 24.6 bits (52), Expect(2) = 9e-95
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = +1

Query: 316 RSSPCRTSTTA 348
           R SPCRTSTTA
Sbjct: 2   RRSPCRTSTTA 12


>ref|XP_548106.2| PREDICTED: similar to keratin 13 isoform a isoform 1 [Canis
            familiaris].
          Length = 407

 Score =  361 bits (927), Expect = e-100
 Identities = 183/272 (67%), Positives = 221/272 (81%), Gaps = 1/272 (0%)
 Frame = +3

Query: 312  NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPG-PARDYSHYFKTIEDL 488
            NEK+TMQNLNDRLASYL+KVRALE+AN +LEVKIRDW+ KQ P  P RDYS Y+KTIE+L
Sbjct: 95   NEKITMQNLNDRLASYLDKVRALEEANTELEVKIRDWHLKQSPSSPERDYSPYYKTIEEL 154

Query: 489  RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 668
            RDKIL ATI+N++++L+IDNARLAADDFR K+E E  LR SVEADINGLRRVLDELTL++
Sbjct: 155  RDKILAATIDNNRVILEIDNARLAADDFRLKYENELTLRQSVEADINGLRRVLDELTLSK 214

Query: 669  TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 848
            TDLE+QIE L EELAYLKKNHEEE+     Q+ GQV+VE+D+ PGIDL ++L++MR QYE
Sbjct: 215  TDLEMQIESLNEELAYLKKNHEEEMKEFSNQMVGQVNVEMDATPGIDLTRVLAEMREQYE 274

Query: 849  VMAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMK 1028
             MAE+NR+DAE WF S++ ELN+EV+ +T  +Q SKTE+T+LRRTLQGLEIELQSQL+MK
Sbjct: 275  AMAEKNRRDAEEWFHSKSAELNKEVSTNTAMIQTSKTEITELRRTLQGLEIELQSQLSMK 334

Query: 1029 XXXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
                        R+  QL QIQ LIS IE  L
Sbjct: 335  AGLESTLADTECRYALQLQQIQGLISSIEAQL 366


>ref|XP_850765.1| PREDICTED: similar to keratin 13 isoform a isoform 2 [Canis
            familiaris].
          Length = 404

 Score =  360 bits (923), Expect = 2e-99
 Identities = 182/272 (66%), Positives = 220/272 (80%), Gaps = 1/272 (0%)
 Frame = +3

Query: 312  NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPG-PARDYSHYFKTIEDL 488
            NEK+TMQNLNDRLASYL+KVRALE+AN +LEVKIRDW+ KQ P  P RDYS Y+KTIE+L
Sbjct: 63   NEKITMQNLNDRLASYLDKVRALEEANTELEVKIRDWHLKQSPSSPERDYSPYYKTIEEL 122

Query: 489  RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 668
            RDKIL ATI+N++++L+IDNARLAADDFR K+E E  LR SVEADINGLRRVLDELTL++
Sbjct: 123  RDKILAATIDNNRVILEIDNARLAADDFRLKYENELTLRQSVEADINGLRRVLDELTLSK 182

Query: 669  TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 848
            TDLE+QIE L EELAYLKKNHEEE+     Q+ GQV+VE+D+ PGIDL ++L++MR QYE
Sbjct: 183  TDLEMQIESLNEELAYLKKNHEEEMKEFSNQMVGQVNVEMDATPGIDLTRVLAEMREQYE 242

Query: 849  VMAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMK 1028
             MAE+NR+DAE WF S+  +LN+EV+ +T  +Q SKTE+T+LRRTLQGLEIELQSQL+MK
Sbjct: 243  AMAEKNRRDAEEWFHSKVPQLNKEVSTNTAMIQTSKTEITELRRTLQGLEIELQSQLSMK 302

Query: 1029 XXXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
                        R+  QL QIQ LIS IE  L
Sbjct: 303  AGLESTLADTECRYALQLQQIQGLISSIEAQL 334


>ref|XP_861773.1| PREDICTED: similar to type I keratin KA17 isoform 2 [Canis
            familiaris].
          Length = 413

 Score =  342 bits (878), Expect = 3e-94
 Identities = 175/270 (64%), Positives = 215/270 (79%)
 Frame = +3

Query: 315  EKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLRD 494
            EK TMQNLNDRLASYL+KVRALE+AN +LEVKIRDWYQKQ PGPARDYSHY++TIEDL++
Sbjct: 84   EKATMQNLNDRLASYLDKVRALEEANTELEVKIRDWYQKQAPGPARDYSHYYQTIEDLKN 143

Query: 495  KILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLARTD 674
            KIL AT++N+ I+LQIDNARLAADDFRTK                    VLDELTL+R D
Sbjct: 144  KILTATVDNANILLQIDNARLAADDFRTK--------------------VLDELTLSRAD 183

Query: 675  LELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEVM 854
            LE+QIE LKEELAYL+KNHEEE++AL+GQVGG+++VE+D+APG+DL++ILS+MR QYE M
Sbjct: 184  LEMQIENLKEELAYLRKNHEEEMNALRGQVGGEINVEMDAAPGVDLSRILSEMRDQYEKM 243

Query: 855  AEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKXX 1034
            AE+NRKDAE WF S+TEELNREVA ++E +Q  K+E+++LRRT+Q LEIELQSQL+MK  
Sbjct: 244  AEKNRKDAEDWFFSKTEELNREVATNSELVQSGKSEISELRRTVQALEIELQSQLSMKAS 303

Query: 1035 XXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
                      R+  QL+QIQ LI  +E  L
Sbjct: 304  LEGSLAETENRYCVQLSQIQGLIGSVEEQL 333


>ref|NP_001075890.1| keratin 12 [Canis lupus familiaris].
          Length = 507

 Score =  325 bits (834), Expect = 4e-89
 Identities = 168/276 (60%), Positives = 212/276 (76%), Gaps = 5/276 (1%)
 Frame = +3

Query: 312  NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQG-----PGPARDYSHYFKT 476
            +EK TMQNLNDRLASYL+KVRALE+AN +LE KIR+WY+ +G     PG   DYS Y+  
Sbjct: 138  SEKETMQNLNDRLASYLDKVRALEEANTELENKIREWYETRGSGTGDPGSQSDYSKYYPL 197

Query: 477  IEDLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDEL 656
            IEDLR++I+ A+I N++++LQIDNARLAA+DFR K+E E AL  SVEADINGLRRVLDEL
Sbjct: 198  IEDLRNEIISASIGNAQLILQIDNARLAAEDFRMKYENELALHQSVEADINGLRRVLDEL 257

Query: 657  TLARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMR 836
            TLAR DLE+QIE L EELAYLKKNHEEE+ + +    G++SVE+D+AP +DL ++L++MR
Sbjct: 258  TLARADLEMQIENLTEELAYLKKNHEEELQSFRAGGPGEISVEMDAAPAVDLTRLLNNMR 317

Query: 837  SQYEVMAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQ 1016
            +QYE +AEQNRKDAEAWF  ++ EL +E++ +TEQLQ SK+EVTDLRR LQ LEIELQSQ
Sbjct: 318  AQYEAIAEQNRKDAEAWFIEKSGELRKEISTNTEQLQSSKSEVTDLRRALQNLEIELQSQ 377

Query: 1017 LNMKXXXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
            L  K             +  QL+Q+Q LI  +E  L
Sbjct: 378  LATKKSLEASLAEVEGDYCGQLSQVQQLIGSLEEQL 413


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,185,237
Number of extensions: 1143424
Number of successful extensions: 7861
Number of sequences better than 1.0e-05: 119
Number of HSP's gapped: 7529
Number of HSP's successfully gapped: 128
Length of query: 375
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 271
Effective length of database: 15,407,560
Effective search space: 4175448760
Effective search space used: 4175448760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001867
         (1125 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_002267.2| keratin, type I cytoskeletal 19 [Homo sapiens].      482   e-136
Alignment   gi|NP_000413.1| keratin, type I cytoskeletal 17 [Homo sapiens].      387   e-107
Alignment   gi|NP_005548.2| keratin, type I cytoskeletal 16 [Homo sapiens].      378   e-105
Alignment   gi|NP_000517.2| keratin, type I cytoskeletal 14 [Homo sapiens].      377   e-104
Alignment   gi|NP_002266.2| keratin, type I cytoskeletal 15 [Homo sapiens].      377   e-104
Alignment   gi|NP_002265.2| keratin, type I cytoskeletal 13 isoform b [Homo...   366   e-101
Alignment   gi|NP_705694.2| keratin, type I cytoskeletal 13 isoform a [Homo...   366   e-101
Alignment   gi|NP_000214.1| keratin, type I cytoskeletal 12 [Homo sapiens].      332   4e-91
Alignment   gi|NP_000412.3| keratin, type I cytoskeletal 10 [Homo sapiens].      325   4e-89
Alignment   gi|NP_003762.1| keratin, type I cuticular Ha6 [Homo sapiens].        314   1e-85

>ref|NP_002267.2| keratin, type I cytoskeletal 19 [Homo sapiens].
          Length = 400

 Score =  482 bits (1240), Expect = e-136
 Identities = 259/339 (76%), Positives = 272/339 (80%)
 Frame = +3

Query: 108  FGGLGGGSVRFSAGGAFRAPSIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 287
            FGGLGGGSVRF  G AFRAPSIH                                     
Sbjct: 15   FGGLGGGSVRFGPGVAFRAPSIHGGSGGRGVSVSSARFVSSSSSGAYGGGYGGVLTASDG 74

Query: 288  XXXXXXXXNEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHY 467
                    NEKLTMQNLNDRLASYL+KVRALE ANG+LEVKIRDWYQKQGPGP+RDYSHY
Sbjct: 75   LLAG----NEKLTMQNLNDRLASYLDKVRALEAANGELEVKIRDWYQKQGPGPSRDYSHY 130

Query: 468  FKTIEDLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVL 647
            + TI+DLRDKILGATIENS+IVLQIDNARLAADDFRTKFETEQALR+SVEADINGLRRVL
Sbjct: 131  YTTIQDLRDKILGATIENSRIVLQIDNARLAADDFRTKFETEQALRMSVEADINGLRRVL 190

Query: 648  DELTLARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILS 827
            DELTLARTDLE+QIEGLKEELAYLKKNHEEEIS L+GQVGGQVSVEVDSAPG DLAKILS
Sbjct: 191  DELTLARTDLEMQIEGLKEELAYLKKNHEEEISTLRGQVGGQVSVEVDSAPGTDLAKILS 250

Query: 828  DMRSQYEVMAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIEL 1007
            DMRSQYEVMAEQNRKDAEAWFTSRTEELNREVAGHTEQLQ+S++EVTDLRRTLQGLEIEL
Sbjct: 251  DMRSQYEVMAEQNRKDAEAWFTSRTEELNREVAGHTEQLQMSRSEVTDLRRTLQGLEIEL 310

Query: 1008 QSQLNMKXXXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
            QSQL+MK            RFGAQLA IQALISGIE  L
Sbjct: 311  QSQLSMKAALEDTLAETEARFGAQLAHIQALISGIEAQL 349


>ref|NP_000413.1| keratin, type I cytoskeletal 17 [Homo sapiens].
          Length = 432

 Score =  387 bits (994), Expect = e-107
 Identities = 193/270 (71%), Positives = 234/270 (86%)
 Frame = +3

Query: 315  EKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLRD 494
            EK TMQNLNDRLASYL+KVRALE+AN +LEVKIRDWYQ+Q PGPARDYS Y++TIE+L++
Sbjct: 84   EKATMQNLNDRLASYLDKVRALEEANTELEVKIRDWYQRQAPGPARDYSQYYRTIEELQN 143

Query: 495  KILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLARTD 674
            KIL AT++N+ I+LQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR D
Sbjct: 144  KILTATVDNANILLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLARAD 203

Query: 675  LELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEVM 854
            LE+QIE LKEELAYLKKNHEEE++AL+GQVGG+++VE+D+APG+DL++IL++MR QYE M
Sbjct: 204  LEMQIENLKEELAYLKKNHEEEMNALRGQVGGEINVEMDAAPGVDLSRILNEMRDQYEKM 263

Query: 855  AEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKXX 1034
            AE+NRKDAE WF S+TEELNREVA ++E +Q  K+E+++LRRT+Q LEIELQSQL+MK  
Sbjct: 264  AEKNRKDAEDWFFSKTEELNREVATNSELVQSGKSEISELRRTMQALEIELQSQLSMKAS 323

Query: 1035 XXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
                      R+  QL+QIQ LI  +E  L
Sbjct: 324  LEGNLAETENRYCVQLSQIQGLIGSVEEQL 353


>ref|NP_005548.2| keratin, type I cytoskeletal 16 [Homo sapiens].
          Length = 473

 Score =  378 bits (971), Expect = e-105
 Identities = 190/271 (70%), Positives = 230/271 (84%)
 Frame = +3

Query: 312  NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLR 491
            +EK+TMQNLNDRLASYL+KVRALE+AN DLEVKIRDWYQ+Q P   +DYS YFKTIEDLR
Sbjct: 116  SEKVTMQNLNDRLASYLDKVRALEEANADLEVKIRDWYQRQRPSEIKDYSPYFKTIEDLR 175

Query: 492  DKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLART 671
            +KI+ ATIEN++ +LQIDNARLAADDFRTK+E E ALR +VEAD+NGLRRVLDELTLART
Sbjct: 176  NKIIAATIENAQPILQIDNARLAADDFRTKYEHELALRQTVEADVNGLRRVLDELTLART 235

Query: 672  DLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEV 851
            DLE+QIEGLKEELAYL+KNHEEE+ AL+GQ GG V+VE+D+APG+DL++IL++MR QYE 
Sbjct: 236  DLEMQIEGLKEELAYLRKNHEEEMLALRGQTGGDVNVEMDAAPGVDLSRILNEMRDQYEQ 295

Query: 852  MAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKX 1031
            MAE+NR+DAE WF S+TEELN+EVA ++E +Q S++EVT+LRR LQGLEIELQSQL+MK 
Sbjct: 296  MAEKNRRDAETWFLSKTEELNKEVASNSELVQSSRSEVTELRRVLQGLEIELQSQLSMKA 355

Query: 1032 XXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
                       R+  QL+QIQ LI  +E  L
Sbjct: 356  SLENSLEETKGRYCMQLSQIQGLIGSVEEQL 386


>ref|NP_000517.2| keratin, type I cytoskeletal 14 [Homo sapiens].
          Length = 472

 Score =  377 bits (968), Expect = e-104
 Identities = 189/271 (69%), Positives = 230/271 (84%)
 Frame = +3

Query: 312  NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLR 491
            +EK+TMQNLNDRLASYL+KVRALE+AN DLEVKIRDWYQ+Q P   +DYS YFKTIEDLR
Sbjct: 114  SEKVTMQNLNDRLASYLDKVRALEEANADLEVKIRDWYQRQRPAEIKDYSPYFKTIEDLR 173

Query: 492  DKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLART 671
            +KIL AT++N+ ++LQIDNARLAADDFRTK+ETE  LR+SVEADINGLRRVLDELTLAR 
Sbjct: 174  NKILTATVDNANVLLQIDNARLAADDFRTKYETELNLRMSVEADINGLRRVLDELTLARA 233

Query: 672  DLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEV 851
            DLE+QIE LKEELAYLKKNHEEE++AL+GQVGG V+VE+D+APG+DL++IL++MR QYE 
Sbjct: 234  DLEMQIESLKEELAYLKKNHEEEMNALRGQVGGDVNVEMDAAPGVDLSRILNEMRDQYEK 293

Query: 852  MAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKX 1031
            MAE+NRKDAE WF ++TEELNREVA ++E +Q  K+E+++LRRT+Q LEIELQSQL+MK 
Sbjct: 294  MAEKNRKDAEEWFFTKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKA 353

Query: 1032 XXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
                       R+  QLAQIQ +I  +E  L
Sbjct: 354  SLENSLEETKGRYCMQLAQIQEMIGSVEEQL 384


>ref|NP_002266.2| keratin, type I cytoskeletal 15 [Homo sapiens].
          Length = 456

 Score =  377 bits (967), Expect = e-104
 Identities = 189/272 (69%), Positives = 222/272 (81%), Gaps = 1/272 (0%)
 Frame = +3

Query: 312  NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGP-GPARDYSHYFKTIEDL 488
            NEK+TMQNLNDRLASYL+KVRALE+AN DLEVKI DWYQKQ P  P  DYS YFKTIE+L
Sbjct: 104  NEKITMQNLNDRLASYLDKVRALEEANADLEVKIHDWYQKQTPTSPECDYSQYFKTIEEL 163

Query: 489  RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 668
            RDKI+  TI+NS+++L+IDNARLAADDFR K+E E ALR  VEADINGLRRVLDELTLAR
Sbjct: 164  RDKIMATTIDNSRVILEIDNARLAADDFRLKYENELALRQGVEADINGLRRVLDELTLAR 223

Query: 669  TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 848
            TDLE+QIEGL EELAYLKKNHEEE+     Q+ GQV+VE+D+APG+DL ++L++MR QYE
Sbjct: 224  TDLEMQIEGLNEELAYLKKNHEEEMKEFSSQLAGQVNVEMDAAPGVDLTRVLAEMREQYE 283

Query: 849  VMAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMK 1028
             MAE+NR+D EAWF S+TEELN+EVA +TE +Q SKTE+TDLRRT+Q LEIELQSQL+MK
Sbjct: 284  AMAEKNRRDVEAWFFSKTEELNKEVASNTEMIQTSKTEITDLRRTMQELEIELQSQLSMK 343

Query: 1029 XXXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
                        R+  QL QIQ LI G+E  L
Sbjct: 344  AGLENSLAETECRYATQLQQIQGLIGGLEAQL 375


>ref|NP_002265.2| keratin, type I cytoskeletal 13 isoform b [Homo sapiens].
          Length = 420

 Score =  366 bits (939), Expect = e-101
 Identities = 186/272 (68%), Positives = 222/272 (81%), Gaps = 1/272 (0%)
 Frame = +3

Query: 312  NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPG-PARDYSHYFKTIEDL 488
            NEK+TMQNLNDRLASYLEKVRALE+AN DLEVKIRDW+ KQ P  P RDYS Y+KTIE+L
Sbjct: 103  NEKITMQNLNDRLASYLEKVRALEEANADLEVKIRDWHLKQSPASPERDYSPYYKTIEEL 162

Query: 489  RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 668
            RDKIL ATIEN++++L+IDNARLAADDFR K+E E ALR SVEADINGLRRVLDELTL++
Sbjct: 163  RDKILTATIENNRVILEIDNARLAADDFRLKYENELALRQSVEADINGLRRVLDELTLSK 222

Query: 669  TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 848
            TDLE+QIE L EELAY+KKNHEEE+     QV GQV+VE+D+ PGIDL ++L++MR QYE
Sbjct: 223  TDLEMQIESLNEELAYMKKNHEEEMKEFSNQVVGQVNVEMDATPGIDLTRVLAEMREQYE 282

Query: 849  VMAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMK 1028
             MAE+NR+DAE WF +++ ELN+EV+ +T  +Q SKTE+T+LRRTLQGLEIELQSQL+MK
Sbjct: 283  AMAERNRRDAEEWFHAKSAELNKEVSTNTAMIQTSKTEITELRRTLQGLEIELQSQLSMK 342

Query: 1029 XXXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
                        R+  QL QIQ LIS IE  L
Sbjct: 343  AGLENTVAETECRYALQLQQIQGLISSIEAQL 374


>ref|NP_705694.2| keratin, type I cytoskeletal 13 isoform a [Homo sapiens].
          Length = 458

 Score =  366 bits (939), Expect = e-101
 Identities = 186/272 (68%), Positives = 222/272 (81%), Gaps = 1/272 (0%)
 Frame = +3

Query: 312  NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPG-PARDYSHYFKTIEDL 488
            NEK+TMQNLNDRLASYLEKVRALE+AN DLEVKIRDW+ KQ P  P RDYS Y+KTIE+L
Sbjct: 103  NEKITMQNLNDRLASYLEKVRALEEANADLEVKIRDWHLKQSPASPERDYSPYYKTIEEL 162

Query: 489  RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 668
            RDKIL ATIEN++++L+IDNARLAADDFR K+E E ALR SVEADINGLRRVLDELTL++
Sbjct: 163  RDKILTATIENNRVILEIDNARLAADDFRLKYENELALRQSVEADINGLRRVLDELTLSK 222

Query: 669  TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 848
            TDLE+QIE L EELAY+KKNHEEE+     QV GQV+VE+D+ PGIDL ++L++MR QYE
Sbjct: 223  TDLEMQIESLNEELAYMKKNHEEEMKEFSNQVVGQVNVEMDATPGIDLTRVLAEMREQYE 282

Query: 849  VMAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMK 1028
             MAE+NR+DAE WF +++ ELN+EV+ +T  +Q SKTE+T+LRRTLQGLEIELQSQL+MK
Sbjct: 283  AMAERNRRDAEEWFHAKSAELNKEVSTNTAMIQTSKTEITELRRTLQGLEIELQSQLSMK 342

Query: 1029 XXXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
                        R+  QL QIQ LIS IE  L
Sbjct: 343  AGLENTVAETECRYALQLQQIQGLISSIEAQL 374


>ref|NP_000214.1| keratin, type I cytoskeletal 12 [Homo sapiens].
          Length = 494

 Score =  332 bits (851), Expect = 4e-91
 Identities = 172/275 (62%), Positives = 215/275 (78%), Gaps = 4/275 (1%)
 Frame = +3

Query: 312  NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPA----RDYSHYFKTI 479
            +EK TMQNLNDRLASYL+KVRALE+AN +LE KIR+WY+ +G G A     DYS Y+  I
Sbjct: 124  SEKETMQNLNDRLASYLDKVRALEEANTELENKIREWYETRGTGTADASQSDYSKYYPLI 183

Query: 480  EDLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELT 659
            EDLR+KI+ A+I N++++LQIDNARLAA+DFR K+E E ALR  VEADINGLRRVLDELT
Sbjct: 184  EDLRNKIISASIGNAQLLLQIDNARLAAEDFRMKYENELALRQGVEADINGLRRVLDELT 243

Query: 660  LARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRS 839
            L RTDLE+QIE L EELAY+KKNHE+E+ + +    G+VSVE+D+APG+DL ++L+DMR+
Sbjct: 244  LTRTDLEMQIESLNEELAYMKKNHEDELQSFRVGGPGEVSVEMDAAPGVDLTRLLNDMRA 303

Query: 840  QYEVMAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQL 1019
            QYE +AEQNRKDAEAWF  ++ EL +E++ +TEQLQ SK+EVTDLRR  Q LEIELQSQL
Sbjct: 304  QYETIAEQNRKDAEAWFIEKSGELRKEISTNTEQLQSSKSEVTDLRRAFQNLEIELQSQL 363

Query: 1020 NMKXXXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
             MK             + AQL+Q+Q LIS +E  L
Sbjct: 364  AMKKSLEDSLAEAEGDYCAQLSQVQQLISNLEAQL 398


>ref|NP_000412.3| keratin, type I cytoskeletal 10 [Homo sapiens].
          Length = 584

 Score =  325 bits (834), Expect = 4e-89
 Identities = 167/274 (60%), Positives = 212/274 (77%), Gaps = 3/274 (1%)
 Frame = +3

Query: 312  NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQG---PGPARDYSHYFKTIE 482
            NEK+TMQNLNDRLASYL+KVRALE++N +LE KI++WY+K G    G  RDYS Y+KTI+
Sbjct: 145  NEKVTMQNLNDRLASYLDKVRALEESNYELEGKIKEWYEKHGNSHQGEPRDYSKYYKTID 204

Query: 483  DLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTL 662
            DL+++IL  T +N+ I+LQIDNARLAADDFR K+E E ALR SVEADINGLRRVLDELTL
Sbjct: 205  DLKNQILNLTTDNANILLQIDNARLAADDFRLKYENEVALRQSVEADINGLRRVLDELTL 264

Query: 663  ARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQ 842
             + DLE+QIE L EELAYLKKNHEEE+  L+    G V+VE+++APG+DL ++L++MRSQ
Sbjct: 265  TKADLEMQIESLTEELAYLKKNHEEEMKDLRNVSTGDVNVEMNAAPGVDLTQLLNNMRSQ 324

Query: 843  YEVMAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLN 1022
            YE +AEQNRKDAEAWF  +++EL  E+  + EQ+   K+E+T+LRR +Q LEIELQSQL 
Sbjct: 325  YEQLAEQNRKDAEAWFNEKSKELTTEIDNNIEQISSYKSEITELRRNVQALEIELQSQLA 384

Query: 1023 MKXXXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
            +K            R+  QL+QIQA IS +E  L
Sbjct: 385  LKQSLEASLAETEGRYCVQLSQIQAQISALEEQL 418


>ref|NP_003762.1| keratin, type I cuticular Ha6 [Homo sapiens].
          Length = 467

 Score =  314 bits (804), Expect = 1e-85
 Identities = 160/271 (59%), Positives = 204/271 (75%)
 Frame = +3

Query: 312  NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLR 491
            +EK TMQ LNDRLA+YLEKVR LE+ N +LE +I++WY+ Q P    DY  YFKTIED +
Sbjct: 92   SEKETMQFLNDRLANYLEKVRQLERENAELESRIQEWYEFQIPYICPDYQSYFKTIEDFQ 151

Query: 492  DKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLART 671
             KIL    EN+++VLQIDNA+LAADDFRTK+ETE +LR  VEADINGLRR+LDELTL + 
Sbjct: 152  QKILLTKSENARLVLQIDNAKLAADDFRTKYETELSLRQLVEADINGLRRILDELTLCKA 211

Query: 672  DLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEV 851
            DLE Q+E LKEEL  LKKNHEEE+S L+ Q+G +++VEVD+AP +DL KIL DMR QYE 
Sbjct: 212  DLEAQVESLKEELMCLKKNHEEEVSVLRCQLGDRLNVEVDAAPPVDLNKILEDMRCQYEA 271

Query: 852  MAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKX 1031
            + E NR+D EAWF ++TEELN++V   +EQLQ  +TE+ +LRRT+  LEIELQ+Q +M+ 
Sbjct: 272  LVENNRRDVEAWFNTQTEELNQQVVSSSEQLQCCQTEIIELRRTVNALEIELQAQHSMRN 331

Query: 1032 XXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
                       R+ +QLAQ+Q LIS +E  L
Sbjct: 332  SLESTLAETEARYSSQLAQMQCLISNVEAQL 362


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,975,935
Number of extensions: 1085438
Number of successful extensions: 6866
Number of sequences better than 1.0e-05: 77
Number of HSP's gapped: 6650
Number of HSP's successfully gapped: 77
Length of query: 375
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 271
Effective length of database: 14,868,908
Effective search space: 4029474068
Effective search space used: 4029474068
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001867
         (1125 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_032497.1| keratin, type I cytoskeletal 19 [Mus musculus].      453   e-127
Alignment   gi|NP_997648.2| keratin, type I cytoskeletal 42 [Mus musculus].      396   e-110
Alignment   gi|NP_034793.1| keratin, type I cytoskeletal 17 [Mus musculus].      388   e-108
Alignment   gi|NP_032495.2| keratin, type I cytoskeletal 15 [Mus musculus].      380   e-106
Alignment   gi|NP_058654.1| keratin, type I cytoskeletal 14 [Mus musculus].      376   e-104
Alignment   gi|NP_034792.1| keratin, type I cytoskeletal 13 [Mus musculus].      358   4e-99
Alignment   gi|NP_032496.1| keratin, type I cytoskeletal 16 [Mus musculus].      354   6e-98
Alignment   gi|NP_034791.2| keratin, type I cytoskeletal 12 [Mus musculus].      319   3e-87
Alignment   gi|NP_034790.2| keratin, type I cytoskeletal 10 [Mus musculus].      319   3e-87
Alignment   gi|NP_001167570.1| keratin, type I cuticular Ha6 [Mus musculus].     314   7e-86

>ref|NP_032497.1| keratin, type I cytoskeletal 19 [Mus musculus].
          Length = 403

 Score =  453 bits (1166), Expect = e-127
 Identities = 241/339 (71%), Positives = 265/339 (78%)
 Frame = +3

Query: 108  FGGLGGGSVRFSAGGAFRAPSIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 287
            FGG GGGSVR  +GG FRAPSIH                                     
Sbjct: 15   FGGTGGGSVRIGSGGVFRAPSIHGGSGGRGVSVSSTRFVTSSSGSYGGVRGGSFSGTLAV 74

Query: 288  XXXXXXXXNEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHY 467
                    NEK+TMQNLNDRLASYL+KVRALEQANG+LEVKIRDWYQKQGPGP+RDY+HY
Sbjct: 75   SDGLLSG-NEKITMQNLNDRLASYLDKVRALEQANGELEVKIRDWYQKQGPGPSRDYNHY 133

Query: 468  FKTIEDLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVL 647
            FKTIEDLRDKILGATI+NSKIVLQIDNARLAADDFRTKFETE ALRLSVEADINGLRRVL
Sbjct: 134  FKTIEDLRDKILGATIDNSKIVLQIDNARLAADDFRTKFETEHALRLSVEADINGLRRVL 193

Query: 648  DELTLARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILS 827
            DELTLARTDLE+QIE LKEELAYLKKNHEEEI+AL+ QVGGQVSVEVDS PG+DLAKILS
Sbjct: 194  DELTLARTDLEMQIESLKEELAYLKKNHEEEITALRSQVGGQVSVEVDSTPGVDLAKILS 253

Query: 828  DMRSQYEVMAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIEL 1007
            +MRSQYE+MAE+NRKDAEA + +R EELN +VA H+EQ+QISKTEVTDLRRTLQGLEIEL
Sbjct: 254  EMRSQYEIMAEKNRKDAEATYLARIEELNTQVAVHSEQIQISKTEVTDLRRTLQGLEIEL 313

Query: 1008 QSQLNMKXXXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
            QSQL+MK            R+G QL+QIQ++ISG E  L
Sbjct: 314  QSQLSMKAALEGTLAETEARYGVQLSQIQSVISGFEAQL 352


>ref|NP_997648.2| keratin, type I cytoskeletal 42 [Mus musculus].
          Length = 452

 Score =  396 bits (1018), Expect = e-110
 Identities = 199/271 (73%), Positives = 237/271 (87%)
 Frame = +3

Query: 312  NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLR 491
            +EK TMQNLNDRLA+YL++VRALE+AN DLEVKIR+WY+KQGPGPARDYS YFKTIEDLR
Sbjct: 93   SEKETMQNLNDRLATYLDRVRALEEANADLEVKIREWYKKQGPGPARDYSPYFKTIEDLR 152

Query: 492  DKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLART 671
            +KIL ATI+N+ IVLQIDNARLAADDFRTK+ETE  LR+SVEADINGLRRVLDELTLAR 
Sbjct: 153  NKILAATIDNASIVLQIDNARLAADDFRTKYETELNLRMSVEADINGLRRVLDELTLARA 212

Query: 672  DLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEV 851
            DLE+QIE LKEELAYL+KNHEEE++AL+GQVGG V+VE+D+APG+DL++IL++MR QYE 
Sbjct: 213  DLEMQIESLKEELAYLRKNHEEEMNALRGQVGGDVNVEMDAAPGVDLSRILNEMRDQYEK 272

Query: 852  MAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKX 1031
            MAE+NRKDAE WF ++TEELNREVA +TE LQ S+TE+T+LRR++Q LEIELQSQL+MK 
Sbjct: 273  MAEKNRKDAEEWFFTKTEELNREVATNTEALQSSRTEITELRRSVQNLEIELQSQLSMKA 332

Query: 1032 XXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
                       R+GAQLAQ+Q LIS +E  L
Sbjct: 333  SLENSLAETEARYGAQLAQLQGLISSVEQQL 363


>ref|NP_034793.1| keratin, type I cytoskeletal 17 [Mus musculus].
          Length = 433

 Score =  388 bits (997), Expect = e-108
 Identities = 195/270 (72%), Positives = 233/270 (86%)
 Frame = +3

Query: 315  EKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLRD 494
            EK TMQNLNDRLASYL+KVRALE+AN +LEVKIRDWYQKQ PGPARDYS Y+ TIEDL++
Sbjct: 84   EKATMQNLNDRLASYLDKVRALEEANTELEVKIRDWYQKQAPGPARDYSAYYHTIEDLKN 143

Query: 495  KILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLARTD 674
            KIL AT++N+ I+LQIDNARLAADDFRTKFETEQALR+SVEADINGLRRVLDELTLAR D
Sbjct: 144  KILVATVDNASILLQIDNARLAADDFRTKFETEQALRMSVEADINGLRRVLDELTLARAD 203

Query: 675  LELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEVM 854
            LE+QIE LKEELAYLKKNHEEE++AL+GQVGG+++VE+D+APG+DL++ILS+MR QYE M
Sbjct: 204  LEMQIENLKEELAYLKKNHEEEMNALRGQVGGEINVEMDAAPGVDLSRILSEMRDQYEKM 263

Query: 855  AEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKXX 1034
            AE+NRKDAE WF S+TEELNREVA ++E +Q  K+E+++LRRT+Q LEIELQSQL+MK  
Sbjct: 264  AEKNRKDAEDWFFSKTEELNREVATNSELVQSGKSEISELRRTMQALEIELQSQLSMKAS 323

Query: 1035 XXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
                      R+  QL+QIQ LI  +E  L
Sbjct: 324  LEGSLAETENRYCVQLSQIQGLIGSVEEQL 353


>ref|NP_032495.2| keratin, type I cytoskeletal 15 [Mus musculus].
          Length = 456

 Score =  380 bits (977), Expect = e-106
 Identities = 191/272 (70%), Positives = 226/272 (83%), Gaps = 1/272 (0%)
 Frame = +3

Query: 312  NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPG-PARDYSHYFKTIEDL 488
            NEK+TMQNLNDRLASYL+KVRALEQAN +LEVKIRDWYQKQ P  P RDYSHYFKT+E++
Sbjct: 97   NEKVTMQNLNDRLASYLDKVRALEQANTELEVKIRDWYQKQSPASPDRDYSHYFKTMEEI 156

Query: 489  RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 668
            RDKIL ATI+NS++VL+IDNARLAADDFR K+E E  LR  VEADINGLRRVLDELTLAR
Sbjct: 157  RDKILAATIDNSRVVLEIDNARLAADDFRLKYENELTLRQGVEADINGLRRVLDELTLAR 216

Query: 669  TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 848
            TDLE+QIE L EELAYLKKNHEEE+     Q+ GQV+VE+D+APG+DL ++L++MR QYE
Sbjct: 217  TDLEMQIEQLNEELAYLKKNHEEEMKEFSSQLAGQVNVEMDAAPGVDLTRMLAEMREQYE 276

Query: 849  VMAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMK 1028
             +AE+NR+D EAWF S+TEELN+EVA +TE +Q SKTE+TDLRRTLQGLEIELQSQL+MK
Sbjct: 277  AIAEKNRRDVEAWFFSKTEELNKEVASNTEMIQTSKTEITDLRRTLQGLEIELQSQLSMK 336

Query: 1029 XXXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
                        R+  QL QIQ +I+G+E  L
Sbjct: 337  AGLENSLAEVECRYATQLQQIQGVITGLETQL 368


>ref|NP_058654.1| keratin, type I cytoskeletal 14 [Mus musculus].
          Length = 484

 Score =  376 bits (966), Expect = e-104
 Identities = 187/271 (69%), Positives = 231/271 (85%)
 Frame = +3

Query: 312  NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLR 491
            +EK+TMQNLNDRLA+YL+KVRALE+AN +LEVKIRDWYQ+Q P   +DYS YFKTIEDL+
Sbjct: 120  SEKVTMQNLNDRLATYLDKVRALEEANTELEVKIRDWYQRQRPTEIKDYSPYFKTIEDLK 179

Query: 492  DKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLART 671
             KIL AT++N+ ++LQIDNARLAADDFRTKFETEQ+LR+SVEADINGLRRVLDELTLAR 
Sbjct: 180  SKILAATVDNANVLLQIDNARLAADDFRTKFETEQSLRMSVEADINGLRRVLDELTLARA 239

Query: 672  DLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEV 851
            DLE+QIE LKEELAYLKKNHEEE+++++GQVGG V+VE+D+APG+DL++IL++MR QYE 
Sbjct: 240  DLEMQIESLKEELAYLKKNHEEEMASMRGQVGGDVNVEMDAAPGVDLSRILNEMRDQYEK 299

Query: 852  MAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKX 1031
            MAE+NRKDAE WF S+TEELNREVA ++E +Q  K+E+++LRRT+Q LEIELQSQL+MK 
Sbjct: 300  MAEKNRKDAEEWFFSKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKA 359

Query: 1032 XXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
                       R+  QLAQIQ +I  +E  L
Sbjct: 360  SLENNLEETKGRYCMQLAQIQEMIGSVEEQL 390


>ref|NP_034792.1| keratin, type I cytoskeletal 13 [Mus musculus].
          Length = 437

 Score =  358 bits (919), Expect = 4e-99
 Identities = 183/272 (67%), Positives = 218/272 (80%), Gaps = 1/272 (0%)
 Frame = +3

Query: 312  NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPG-PARDYSHYFKTIEDL 488
            NEK+TMQNLNDRLASYL+KVRALE AN DLEVKIRDW+ KQ P  P RDYS Y+KTIE+L
Sbjct: 95   NEKITMQNLNDRLASYLDKVRALEAANADLEVKIRDWHLKQSPASPERDYSAYYKTIEEL 154

Query: 489  RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 668
            R KIL AT +N++I+L+IDNARLAADDFR K+E E  LR SVEADINGLRRVLDELTLA+
Sbjct: 155  RIKILEATTDNNRIILEIDNARLAADDFRLKYENELTLRQSVEADINGLRRVLDELTLAK 214

Query: 669  TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 848
            TDLE+QIE L EELAYLKKNHEEE+     QV GQV+VE+D+ PGIDL ++L++MR QYE
Sbjct: 215  TDLEMQIESLNEELAYLKKNHEEEMKEFSNQVVGQVNVEMDATPGIDLTRVLAEMREQYE 274

Query: 849  VMAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMK 1028
             +AE+NR+DAE WF +++ ELN+EV+ + E +Q SKTE+T+LRRTLQGLEIELQSQL+MK
Sbjct: 275  ALAEKNRRDAEEWFQTKSAELNKEVSSNAEMIQTSKTEITELRRTLQGLEIELQSQLSMK 334

Query: 1029 XXXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
                        R+  QL QIQ LIS IE  L
Sbjct: 335  AGLESTLAETECRYALQLQQIQGLISSIEAQL 366


>ref|NP_032496.1| keratin, type I cytoskeletal 16 [Mus musculus].
          Length = 469

 Score =  354 bits (909), Expect = 6e-98
 Identities = 178/271 (65%), Positives = 221/271 (81%)
 Frame = +3

Query: 312  NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLR 491
            +EK+TMQNLNDRLA+YL+KVRALE+AN DLEVKIRDWYQ+Q P   +DYS YFKTIEDL+
Sbjct: 112  SEKVTMQNLNDRLATYLDKVRALEEANRDLEVKIRDWYQRQRPTEIKDYSPYFKTIEDLK 171

Query: 492  DKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLART 671
             KI+ AT EN++  LQIDNARLAADDFRTK+E E  LR SVE DINGLR+VLDELTL+R 
Sbjct: 172  SKIIIATQENAQFTLQIDNARLAADDFRTKYENELFLRQSVEGDINGLRKVLDELTLSRA 231

Query: 672  DLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEV 851
            DLE+QIE L+EELA+LKKNHEEE+ AL+GQ GG V+VE+D+APG+DL++IL++MR QYE 
Sbjct: 232  DLEMQIENLREELAFLKKNHEEEMLALRGQTGGDVNVEMDAAPGVDLSRILNEMRDQYEQ 291

Query: 852  MAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKX 1031
            MAE+NR+D EAWF  +TEELN+EVA +++ +Q +++EV +LRR  QGLEIELQSQL+MK 
Sbjct: 292  MAEKNRRDVEAWFLRKTEELNKEVASNSDLIQSNRSEVAELRRVFQGLEIELQSQLSMKA 351

Query: 1032 XXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
                       R+  QL+QIQ LIS +E  L
Sbjct: 352  SLENSLEETKGRYCMQLSQIQGLISSVEEQL 382


>ref|NP_034791.2| keratin, type I cytoskeletal 12 [Mus musculus].
          Length = 487

 Score =  319 bits (817), Expect = 3e-87
 Identities = 163/274 (59%), Positives = 209/274 (76%), Gaps = 3/274 (1%)
 Frame = +3

Query: 312  NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQ---GPGPARDYSHYFKTIE 482
            +EK TMQNLNDRLASYL KVR+LE+AN +LE KIR+WY+ +     G   DYS Y+  IE
Sbjct: 118  SEKETMQNLNDRLASYLGKVRSLEEANAELENKIREWYETRRTRDAGSQSDYSKYYPLIE 177

Query: 483  DLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTL 662
            DL++KI+ A + N++++LQIDNARLAA+DFR K+E E ALR +VEADINGLRRVLDELTL
Sbjct: 178  DLKNKIVSARVSNAQLLLQIDNARLAAEDFRMKYENELALRQTVEADINGLRRVLDELTL 237

Query: 663  ARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQ 842
             R DLE Q+E L EELAY+KKNHEEE+ + +    G+V+VE+D+APG+DL K+L++MR+Q
Sbjct: 238  TRADLEAQLETLTEELAYMKKNHEEELQSFQAGGPGEVNVEMDAAPGVDLTKVLNEMRAQ 297

Query: 843  YEVMAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLN 1022
            YE MAEQNRKDAEAWF  ++ EL +E++ +TEQLQ SK+EVTDL+R +Q LEIELQSQL 
Sbjct: 298  YEAMAEQNRKDAEAWFLEKSRELRKEISSNTEQLQSSKSEVTDLKRMVQNLEIELQSQLA 357

Query: 1023 MKXXXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
            MK             +  QL+Q+Q LI  +E  L
Sbjct: 358  MKSSLEGSLAETEGGYCCQLSQVQQLIGSLEEQL 391


>ref|NP_034790.2| keratin, type I cytoskeletal 10 [Mus musculus].
          Length = 561

 Score =  319 bits (817), Expect = 3e-87
 Identities = 162/274 (59%), Positives = 212/274 (77%), Gaps = 3/274 (1%)
 Frame = +3

Query: 312  NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPAR---DYSHYFKTIE 482
            NEK+TMQNLNDRLASY++KVRALE++N +LE KI++WY+K G    R   DYS Y+KTIE
Sbjct: 134  NEKVTMQNLNDRLASYMDKVRALEESNYELEGKIKEWYEKHGNSSQREPRDYSKYYKTIE 193

Query: 483  DLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTL 662
            DL+ +IL  T +N+ ++LQIDNARLAADDFR K+E E  LR SVEADINGLRRVLDELTL
Sbjct: 194  DLKGQILTLTTDNANVLLQIDNARLAADDFRLKYENEVTLRQSVEADINGLRRVLDELTL 253

Query: 663  ARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQ 842
            +++DLE+QIE L EELAYLKKNHEEE+  L+    G V+VE+++APG+DL ++L++MR+Q
Sbjct: 254  SKSDLEMQIESLNEELAYLKKNHEEEMRDLQNVSTGDVNVEMNAAPGVDLTQLLNNMRNQ 313

Query: 843  YEVMAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLN 1022
            YE +AE+NRKDAE WF  +++EL  E+  + EQ+   K+E+T+LRRT+QGLEIELQSQL 
Sbjct: 314  YEQLAEKNRKDAEEWFNQKSKELTTEIDSNIEQMSSHKSEITELRRTVQGLEIELQSQLA 373

Query: 1023 MKXXXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
            +K            R+  QL+QIQ+ IS +E  L
Sbjct: 374  LKQSLEASLAETEGRYCVQLSQIQSQISALEEQL 407


>ref|NP_001167570.1| keratin, type I cuticular Ha6 [Mus musculus].
          Length = 473

 Score =  314 bits (805), Expect = 7e-86
 Identities = 158/271 (58%), Positives = 203/271 (74%)
 Frame = +3

Query: 312  NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLR 491
            NEK TMQ LNDRLA+YLEKVR LEQ N  LE +IR+WY+ Q P    DY  YFKT E+L+
Sbjct: 92   NEKATMQILNDRLANYLEKVRQLEQENTQLECRIREWYECQIPYICPDYQSYFKTAEELQ 151

Query: 492  DKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLART 671
             KIL    EN++++LQIDNA+LAADDFRTK+ETE +LR  VEADINGLRR+LDELTL + 
Sbjct: 152  QKILLTKSENARLILQIDNAKLAADDFRTKYETELSLRQLVEADINGLRRILDELTLCKA 211

Query: 672  DLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEV 851
            DLE Q+E LKEEL  LK+NHEEE++AL+ Q+G +++VEVD+AP +DL KIL DMR QYE 
Sbjct: 212  DLEAQVESLKEELLCLKRNHEEEVNALRSQLGDRLNVEVDAAPPVDLNKILDDMRCQYET 271

Query: 852  MAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKX 1031
            + E NR+D EAWF ++TEELN++V   +EQLQ  +TE+ +LRRT+  LEIELQ+Q +M+ 
Sbjct: 272  LVENNRRDVEAWFNTQTEELNQQVVSSSEQLQCCQTEIIELRRTVNSLEIELQAQQSMRN 331

Query: 1032 XXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
                       R+ +QL Q+Q LI+ +E  L
Sbjct: 332  SLESTLAETEARYSSQLGQMQCLITNVESQL 362


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,677,850
Number of extensions: 879894
Number of successful extensions: 5201
Number of sequences better than 1.0e-05: 80
Number of HSP's gapped: 4959
Number of HSP's successfully gapped: 80
Length of query: 375
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 272
Effective length of database: 12,523,851
Effective search space: 3406487472
Effective search space used: 3406487472
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001867
         (1125 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003131485.1| PREDICTED: keratin, type I cytoskeletal 19-l...   517   e-147
Alignment   gi|XP_003131486.1| PREDICTED: keratin, type I cytoskeletal 15-l...   373   e-103
Alignment   gi|XP_003131484.1| PREDICTED: keratin, type I cytoskeletal 13-l...   359   1e-99
Alignment   gi|XP_003131509.1| PREDICTED: keratin, type I cytoskeletal 12 [...   331   5e-91
Alignment   gi|XP_003131508.1| PREDICTED: keratin, type I cytoskeletal 10-l...   323   1e-88
Alignment   gi|XP_003131480.2| PREDICTED: keratin, type I cuticular Ha6 iso...   312   2e-85
Alignment   gi|XP_003131482.2| PREDICTED: keratin, type I cuticular Ha5-lik...   296   1e-80
Alignment   gi|XP_003131477.1| PREDICTED: keratin, type I microfibrillar 48...   295   3e-80
Alignment   gi|XP_003131481.1| PREDICTED: keratin, type I cuticular Ha2 [Su...   294   7e-80
Alignment   gi|XP_003131478.1| PREDICTED: LOW QUALITY PROTEIN: keratin, typ...   291   3e-79

>ref|XP_003131485.1| PREDICTED: keratin, type I cytoskeletal 19-like [Sus scrofa].
          Length = 404

 Score =  517 bits (1331), Expect = e-147
 Identities = 279/339 (82%), Positives = 280/339 (82%)
 Frame = +3

Query: 108  FGGLGGGSVRFSAGGAFRAPSIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 287
            FGGLGGGSVRFSAGGAFRAPSIH                                     
Sbjct: 15   FGGLGGGSVRFSAGGAFRAPSIHGGSGGRGVSVSSARFVSSSSSGGYGGGYGGGYAGALA 74

Query: 288  XXXXXXXXNEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHY 467
                    NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHY
Sbjct: 75   GSDGLLAGNEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHY 134

Query: 468  FKTIEDLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVL 647
            FKTIEDLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVL
Sbjct: 135  FKTIEDLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVL 194

Query: 648  DELTLARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILS 827
            DELTLARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILS
Sbjct: 195  DELTLARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILS 254

Query: 828  DMRSQYEVMAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIEL 1007
            DMRSQYEVMAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIEL
Sbjct: 255  DMRSQYEVMAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIEL 314

Query: 1008 QSQLNMKXXXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
            QSQL+MK            RFGAQLAQIQALISGIE  L
Sbjct: 315  QSQLSMKAALEGTLAETEARFGAQLAQIQALISGIEAQL 353


>ref|XP_003131486.1| PREDICTED: keratin, type I cytoskeletal 15-like [Sus scrofa].
          Length = 460

 Score =  373 bits (957), Expect = e-103
 Identities = 186/272 (68%), Positives = 222/272 (81%), Gaps = 1/272 (0%)
 Frame = +3

Query: 312  NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPG-PARDYSHYFKTIEDL 488
            NEK+TMQNLNDRLASYL+KVRALE+AN DLEVKI DWY+KQ P  P RDYS YFKT+E+L
Sbjct: 110  NEKITMQNLNDRLASYLDKVRALEEANADLEVKIHDWYKKQSPSSPERDYSPYFKTMEEL 169

Query: 489  RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 668
            RDKI  A I+NS+++L+IDNARLAADDFR K+E E ALR  VEADINGLRRVLDELTL +
Sbjct: 170  RDKIRAAAIDNSRVILEIDNARLAADDFRLKYENELALRQGVEADINGLRRVLDELTLTK 229

Query: 669  TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 848
            TDLE+QIE L EELAYLKKNHEEE+     Q+ GQV+VE+D+APG+DL ++L++MR QYE
Sbjct: 230  TDLEMQIESLNEELAYLKKNHEEEMKEFSNQLAGQVNVEMDAAPGVDLTRVLAEMREQYE 289

Query: 849  VMAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMK 1028
             +AE+NR+DAEAWF S+TEELN+EVA +TE +Q SKTE+TDLRRT+QGLEIELQSQL+MK
Sbjct: 290  AIAEKNRRDAEAWFFSKTEELNKEVASNTEMIQTSKTEITDLRRTVQGLEIELQSQLSMK 349

Query: 1029 XXXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
                        R+  QL QIQ LI G+E  L
Sbjct: 350  AGLESSLAETECRYATQLQQIQGLIGGLETQL 381


>ref|XP_003131484.1| PREDICTED: keratin, type I cytoskeletal 13-like [Sus scrofa].
          Length = 454

 Score =  359 bits (922), Expect = 1e-99
 Identities = 184/272 (67%), Positives = 214/272 (78%), Gaps = 1/272 (0%)
 Frame = +3

Query: 312  NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPG-PARDYSHYFKTIEDL 488
            NEK+TMQNLNDRLASYLEKVRALE+AN DLEVKIRDWYQKQ P  P RDYS YFKTIE+L
Sbjct: 101  NEKITMQNLNDRLASYLEKVRALEEANTDLEVKIRDWYQKQSPSSPERDYSPYFKTIEEL 160

Query: 489  RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 668
            RDKI  A IEN+++VLQIDNARLAADDFR K+E E  LR SVEADINGLRRVLDELTL +
Sbjct: 161  RDKIQAANIENNRVVLQIDNARLAADDFRLKYENELTLRQSVEADINGLRRVLDELTLTK 220

Query: 669  TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 848
            TDLE+QIE L EELA+LKKNHEEE+     +V GQV+VE+D+ PG+DL ++L++MR QYE
Sbjct: 221  TDLEMQIESLNEELAFLKKNHEEEMKEFSNRVVGQVNVEMDATPGVDLTRVLAEMREQYE 280

Query: 849  VMAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMK 1028
             MAE+NR++AE WF  + EELN+EV   T  +Q SKTE+T+LRRTLQGLEIELQSQL+ K
Sbjct: 281  AMAEKNRREAEEWFNKKIEELNKEVISSTALIQTSKTEITELRRTLQGLEIELQSQLSTK 340

Query: 1029 XXXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
                        R+  QL QIQ LI  IE  L
Sbjct: 341  AGLENSLAETECRYALQLQQIQGLIGSIEAQL 372


>ref|XP_003131509.1| PREDICTED: keratin, type I cytoskeletal 12 [Sus scrofa].
          Length = 494

 Score =  331 bits (848), Expect = 5e-91
 Identities = 173/276 (62%), Positives = 213/276 (77%), Gaps = 5/276 (1%)
 Frame = +3

Query: 312  NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPA-----RDYSHYFKT 476
            +EK TM+NLNDRLASYL+KVRALE+AN DLE KIR+WY+ +G G        DYS YF  
Sbjct: 123  SEKETMKNLNDRLASYLDKVRALEEANTDLENKIREWYETRGSGTGDPRSQSDYSKYFPL 182

Query: 477  IEDLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDEL 656
            IE+L++KI+ A+I N++++LQIDNARLAA+DFR K+E E AL  +VEADINGLRRVLDEL
Sbjct: 183  IEELKNKIISASIANAQLILQIDNARLAAEDFRMKYENEVALCQNVEADINGLRRVLDEL 242

Query: 657  TLARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMR 836
            TL R DLE QIE L EELAYLKKNHEEE+ + +    GQVSVE+D+APG+DL K+L+DMR
Sbjct: 243  TLVRADLETQIETLNEELAYLKKNHEEELQSFRAGGPGQVSVEMDAAPGVDLTKLLNDMR 302

Query: 837  SQYEVMAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQ 1016
            +QYE +AEQNRKDAEAWF  ++ EL +E++ +TEQLQ SK+EVTDLRR LQ LEIELQSQ
Sbjct: 303  AQYEAIAEQNRKDAEAWFIEKSGELRKEISTNTEQLQSSKSEVTDLRRALQNLEIELQSQ 362

Query: 1017 LNMKXXXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
            L MK             + AQL+Q+Q LI G+E  L
Sbjct: 363  LAMKKSLEDSLAETEGDYCAQLSQVQQLIGGLEEQL 398


>ref|XP_003131508.1| PREDICTED: keratin, type I cytoskeletal 10-like [Sus scrofa].
          Length = 613

 Score =  323 bits (827), Expect = 1e-88
 Identities = 164/274 (59%), Positives = 212/274 (77%), Gaps = 3/274 (1%)
 Frame = +3

Query: 312  NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGP---GPARDYSHYFKTIE 482
            NEK+TMQNLNDRLASYL+KVRALE +N +LEVKI++WY K G       RDYS Y+K IE
Sbjct: 157  NEKVTMQNLNDRLASYLDKVRALEDSNYELEVKIKEWYDKHGNVGRREPRDYSKYYKIIE 216

Query: 483  DLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTL 662
            DL+++I+  T++N+ I++Q+DNARLAADDFR K+E E  LR SVEADINGLRRVLDELTL
Sbjct: 217  DLKNQIINLTVDNANILIQVDNARLAADDFRMKYENEVTLRQSVEADINGLRRVLDELTL 276

Query: 663  ARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQ 842
             +TDLE+QIE L EELAYLKKNHEEE+  L+    G V+VE+++APG+DL ++L++MRSQ
Sbjct: 277  TKTDLEMQIESLNEELAYLKKNHEEEMRDLQNVSTGDVNVEMNAAPGVDLTELLNNMRSQ 336

Query: 843  YEVMAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLN 1022
            YE +AEQNR+DAEAWF  +++EL  E+  + EQ+   K+E+T+LRRT+QGLEIELQSQL 
Sbjct: 337  YEQLAEQNRRDAEAWFNEKSKELTTEINTNIEQVSSYKSEITELRRTIQGLEIELQSQLA 396

Query: 1023 MKXXXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
            +K            R+  QLAQIQ+ I+ +E  L
Sbjct: 397  LKQSLEASLAETEGRYCVQLAQIQSQITALEEQL 430


>ref|XP_003131480.2| PREDICTED: keratin, type I cuticular Ha6 isoform 2 [Sus scrofa].
          Length = 459

 Score =  312 bits (799), Expect = 2e-85
 Identities = 157/271 (57%), Positives = 203/271 (74%)
 Frame = +3

Query: 312  NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLR 491
            NEK TMQ LNDRLA+YLEKVR LE+ N +LE +IR+WY+ Q P    DY  YFKTIE+L+
Sbjct: 92   NEKETMQFLNDRLANYLEKVRQLERDNAELESRIREWYESQIPYICPDYQAYFKTIEELQ 151

Query: 492  DKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLART 671
             KIL    +N+++VLQIDNA+LAADDFRTK+ETE  +R  VEAD NGLRR+LDELTL + 
Sbjct: 152  QKILITKADNARLVLQIDNAKLAADDFRTKYETELGMRQLVEADTNGLRRILDELTLCKA 211

Query: 672  DLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEV 851
            DLE+Q+E LKEEL  LKKNHEEE++ L+ Q+G +++VEVD+AP +DL KIL DMR QYE 
Sbjct: 212  DLEMQVESLKEELICLKKNHEEEVNTLRCQLGDRLNVEVDAAPPVDLNKILDDMRCQYEA 271

Query: 852  MAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKX 1031
            + E NR+D EAWF ++TEELN++V   +EQLQ  +TE+ +LRR +  LEIELQ+Q +M+ 
Sbjct: 272  LVENNRRDVEAWFNTQTEELNQQVVSSSEQLQCCQTEIIELRRNVNALEIELQAQHSMRN 331

Query: 1032 XXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
                       R+ +QLAQ+Q LIS +E  L
Sbjct: 332  SLEATLAETEARYSSQLAQMQGLISNVEAQL 362


>ref|XP_003131482.2| PREDICTED: keratin, type I cuticular Ha5-like [Sus scrofa].
          Length = 493

 Score =  296 bits (758), Expect = 1e-80
 Identities = 146/271 (53%), Positives = 203/271 (74%)
 Frame = +3

Query: 312  NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLR 491
            NEK TMQ+LNDRLASYLEKVR LE+ N +LE +IR+W ++Q P    DY  YF+TIE+L+
Sbjct: 134  NEKETMQSLNDRLASYLEKVRRLERENSELEGRIREWCEQQEPYLCPDYQSYFQTIEELQ 193

Query: 492  DKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLART 671
             K L    EN+++V+QIDNA+LAADDFR+K+ETE ++R  VE+D+NGLRR+LD+LTL + 
Sbjct: 194  KKTLCTKAENARLVVQIDNAKLAADDFRSKYETEVSMRQLVESDMNGLRRILDDLTLCKA 253

Query: 672  DLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEV 851
            DLE Q+E LKEEL  LKKNHEEE+++L+ Q+G +++VEVD+AP +DL ++L +MR QYE 
Sbjct: 254  DLEAQVESLKEELLCLKKNHEEEVNSLRCQLGDRLNVEVDAAPPVDLNRVLDEMRCQYET 313

Query: 852  MAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKX 1031
            + E NR+DAE WF ++TEELN++V   +EQLQ  + ++ +LRR +  LEIELQ+Q +M+ 
Sbjct: 314  LVENNRRDAEDWFNTQTEELNQQVVTSSEQLQSCQADIMELRRNVNALEIELQAQHSMRD 373

Query: 1032 XXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
                       R+ +QLAQ+Q LI  +E  L
Sbjct: 374  ALESTLAETEARYSSQLAQMQGLIGNVEAQL 404


>ref|XP_003131477.1| PREDICTED: keratin, type I microfibrillar 48 kDa, component 8C-1-like
            [Sus scrofa].
          Length = 414

 Score =  295 bits (755), Expect = 3e-80
 Identities = 148/271 (54%), Positives = 200/271 (73%)
 Frame = +3

Query: 312  NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLR 491
            NEK TMQ LNDRLASYLEKVR LE+ N +LE +I++  Q+Q P    +Y  YF+TIE+L+
Sbjct: 55   NEKETMQFLNDRLASYLEKVRQLERDNAELERQIQERSQQQEPLVCPNYQSYFRTIEELQ 114

Query: 492  DKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLART 671
             KIL +  EN+++V+QIDNA+LAADDFRTK+ETE  LR  VE+DINGLRR+LDELTL + 
Sbjct: 115  QKILCSKSENARLVVQIDNAKLAADDFRTKYETELGLRQLVESDINGLRRILDELTLCKA 174

Query: 672  DLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEV 851
            DLE Q+E LKEEL  LK NHEEE+++L+ Q+G ++++EVD+AP +DL  +LS+ RSQYE 
Sbjct: 175  DLEAQVESLKEELLCLKSNHEEEVNSLRSQLGDRLNIEVDAAPTVDLNSVLSETRSQYEA 234

Query: 852  MAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKX 1031
            + E NR+D E WF  +TEELN++V   +EQLQ  + E+ +LRRT+  LE+ELQ+Q N++ 
Sbjct: 235  LVETNRRDVEEWFARQTEELNKQVVSSSEQLQSYQAEIIELRRTVNALEVELQAQHNLRD 294

Query: 1032 XXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
                       R+ +QLAQ+Q LI  +E  L
Sbjct: 295  SLENTLTETEARYSSQLAQVQGLIGNVEAQL 325


>ref|XP_003131481.1| PREDICTED: keratin, type I cuticular Ha2 [Sus scrofa].
          Length = 460

 Score =  294 bits (752), Expect = 7e-80
 Identities = 148/271 (54%), Positives = 199/271 (73%)
 Frame = +3

Query: 312  NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLR 491
            NEK T+Q LNDRLA YLEKVR LEQ N +LE KI++  Q Q P  + +Y  YF+TIE+L+
Sbjct: 107  NEKETLQFLNDRLAKYLEKVRQLEQDNAELESKIQEASQSQVPTLSSNYHSYFRTIEELQ 166

Query: 492  DKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLART 671
             KIL    EN++ ++ +DNA+LAADDFRTK+ETE A+R  VEAD NGLRR+LDELTL + 
Sbjct: 167  QKILCTRAENARTIVHMDNAKLAADDFRTKYETELAMRQLVEADTNGLRRILDELTLCKA 226

Query: 672  DLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEV 851
            DLE+Q+E LKEEL  LKKNHEEE+ AL+GQ+G ++++EVD+AP +DL ++L +MR QYE 
Sbjct: 227  DLEMQVESLKEELMCLKKNHEEEVGALQGQLGDRLNIEVDAAPPVDLNRVLEEMRCQYEA 286

Query: 852  MAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKX 1031
            + E NR+D E WFT + EELN++VA  +EQLQ  +++  DLRRT+  LEIELQ+Q +++ 
Sbjct: 287  LVESNRRDVEEWFTMQMEELNQQVATSSEQLQSYQSDAIDLRRTVNMLEIELQAQHSLRD 346

Query: 1032 XXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
                       R+ +QLAQ+Q LI  +E  L
Sbjct: 347  SLENTLTETEARYSSQLAQVQGLIGNVEAQL 377


>ref|XP_003131478.1| PREDICTED: LOW QUALITY PROTEIN: keratin, type I cuticular Ha4-like
            [Sus scrofa].
          Length = 435

 Score =  291 bits (746), Expect = 3e-79
 Identities = 144/271 (53%), Positives = 200/271 (73%)
 Frame = +3

Query: 312  NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLR 491
            NEK TMQ LNDRLASYLEKVR LE+ N +LE +I++  Q+Q P    +Y  YF+TIE+L+
Sbjct: 99   NEKETMQFLNDRLASYLEKVRQLERDNAELERQIQERSQQQEPLVCPNYQSYFRTIEELQ 158

Query: 492  DKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLART 671
             KIL A  EN+++V+Q+DNA+LAADDFRTK+E E++ R  VE+DIN LRR+LDELTL + 
Sbjct: 159  QKILSAKSENTRLVVQVDNAKLAADDFRTKYEVERSSRQLVESDINSLRRILDELTLCKA 218

Query: 672  DLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEV 851
            DLE Q+E L+EEL  LKKNHEEE+++L+ Q+G ++++EVD+AP +DL  +L++ RSQYE 
Sbjct: 219  DLETQVESLREELLCLKKNHEEEVNSLRSQLGDRLNIEVDAAPTVDLNSVLNETRSQYEA 278

Query: 852  MAEQNRKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKX 1031
            + E NR+D E WF  +TEELN++V   +EQLQ  + E+ +LRRT+  LE+ELQ+Q N++ 
Sbjct: 279  LVETNRRDVEEWFARQTEELNKQVVSSSEQLQSYQAEIIELRRTVNALEVELQAQHNLRD 338

Query: 1032 XXXXXXXXXXXRFGAQLAQIQALISGIEPXL 1124
                       R+ +QLAQ+Q LI  +E  L
Sbjct: 339  SLENTLTETEARYSSQLAQVQGLIGNVEAQL 369


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,192,850
Number of extensions: 710368
Number of successful extensions: 4836
Number of sequences better than 1.0e-05: 59
Number of HSP's gapped: 4659
Number of HSP's successfully gapped: 60
Length of query: 375
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 274
Effective length of database: 8,829,335
Effective search space: 2419237790
Effective search space used: 2419237790
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001867
         (1125 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr12                                                         454   e-125
Sscrofa_Chr05                                                          64   2e-07

>Sscrofa_Chr12 
||          Length = 63588571

 Score =  454 bits (229), Expect = e-125
 Identities = 229/229 (100%)
 Strand = Plus / Plus

                                                                            
Query: 9        attcctccagccgccccgcagcacctccgaccggtgtcgcccgcgtctgccttcgccatg 68
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21536799 attcctccagccgccccgcagcacctccgaccggtgtcgcccgcgtctgccttcgccatg 21536858

                                                                            
Query: 69       acttcctacagctatcgccagtcgtcggccacctcgtccttcgggggtctgggcggcggc 128
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21536859 acttcctacagctatcgccagtcgtcggccacctcgtccttcgggggtctgggcggcggc 21536918

                                                                            
Query: 129      tccgtgcgcttcagcgcgggaggcgccttccgcgcccccagcatccacgggggctccggc 188
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21536919 tccgtgcgcttcagcgcgggaggcgccttccgcgcccccagcatccacgggggctccggc 21536978

                                                                 
Query: 189      ggccgcggcgtgtcggtgtcgtccgcccgcttcgtgtcctcgtcctcct 237
                |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21536979 ggccgcggcgtgtcggtgtcgtccgcccgcttcgtgtcctcgtcctcct 21537027



 Score =  389 bits (196), Expect = e-105
 Identities = 196/196 (100%)
 Strand = Plus / Plus

                                                                            
Query: 302      gctggcgggcaacgagaagctcaccatgcagaacctcaacgaccgcctggcctcctacct 361
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21537092 gctggcgggcaacgagaagctcaccatgcagaacctcaacgaccgcctggcctcctacct 21537151

                                                                            
Query: 362      ggagaaggtgcgcgccttggagcaggccaacggtgacctggaggtgaagatccgcgactg 421
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21537152 ggagaaggtgcgcgccttggagcaggccaacggtgacctggaggtgaagatccgcgactg 21537211

                                                                            
Query: 422      gtaccagaagcaggggcccgggcctgcccgcgactacagccactacttcaagaccatcga 481
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21537212 gtaccagaagcaggggcccgggcctgcccgcgactacagccactacttcaagaccatcga 21537271

                                
Query: 482      ggacctgcgggacaag 497
                ||||||||||||||||
Sbjct: 21537272 ggacctgcgggacaag 21537287



 Score =  325 bits (164), Expect = 3e-86
 Identities = 164/164 (100%)
 Strand = Plus / Plus

                                                                            
Query: 736      aggaaatcagtgccctgaagggccaggtgggcggccaggtcagtgtggaggttgattcgg 795
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21539379 aggaaatcagtgccctgaagggccaggtgggcggccaggtcagtgtggaggttgattcgg 21539438

                                                                            
Query: 796      ctccgggcatcgacctagccaagatcctgagcgacatgagaagccagtatgaggtcatgg 855
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21539439 ctccgggcatcgacctagccaagatcctgagcgacatgagaagccagtatgaggtcatgg 21539498

                                                            
Query: 856      ctgagcagaaccggaaggatgctgaggcctggttcaccagccgg 899
                ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21539499 ctgagcagaaccggaaggatgctgaggcctggttcaccagccgg 21539542



 Score =  313 bits (158), Expect = 1e-82
 Identities = 158/158 (100%)
 Strand = Plus / Plus

                                                                            
Query: 581      gttcgagacagagcaggccctgcgcctgagcgtggaggccgacatcaacggcctgcgcag 640
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21538976 gttcgagacagagcaggccctgcgcctgagcgtggaggccgacatcaacggcctgcgcag 21539035

                                                                            
Query: 641      ggtgctggacgagctgaccctggccaggaccgacctggagctgcagatcgaaggcctgaa 700
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21539036 ggtgctggacgagctgaccctggccaggaccgacctggagctgcagatcgaaggcctgaa 21539095

                                                      
Query: 701      ggaagagctggcctacctgaagaagaaccacgaggagg 738
                ||||||||||||||||||||||||||||||||||||||
Sbjct: 21539096 ggaagagctggcctacctgaagaagaaccacgaggagg 21539133



 Score =  254 bits (128), Expect = 9e-65
 Identities = 158/168 (94%)
 Strand = Plus / Plus

                                                                            
Query: 324      accatgcagaacctcaacgaccgcctggcctcctacctggagaaggtgcgcgccttggag 383
                ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 21316374 accatgcagaacctcaacgaccgcctggcctcctacctggacaaggtgcgcgccctggag 21316433

                                                                            
Query: 384      caggccaacggtgacctggaggtgaagatccgcgactggtaccagaagcaggggcccggg 443
                 |||||||||  ||||||||||||||||||| |||||||||| |||||||||| ||||||
Sbjct: 21316434 gaggccaacgccgacctggaggtgaagatccacgactggtacaagaagcagggccccggg 21316493

                                                                
Query: 444      cctgcccgcgactacagccactacttcaagaccatcgaggacctgcgg 491
                ||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 21316494 cctgcccgcgactacagcgcctacttcaagaccatcgaggacctgcgg 21316541



 Score =  244 bits (123), Expect = 9e-62
 Identities = 126/127 (99%)
 Strand = Plus / Plus

                                                                            
Query: 899      gactgaggagctgaaccgggaggtcgctggccacacggagcagctgcagatcagcaagac 958
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21539633 gactgaggagctgaaccgggaggtcgctggccacacggagcagctgcagatcagcaagac 21539692

                                                                            
Query: 959      ggaagtcaccgatctgcggcgcaccctccagggtctggagatcgagctgcagtctcagct 1018
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21539693 ggaagtcaccgatctgcggcgcaccctccagggtctggagatcgagctgcagtctcagct 21539752

                       
Query: 1019     caacatg 1025
                || ||||
Sbjct: 21539753 cagcatg 21539759



 Score =  228 bits (115), Expect = 5e-57
 Identities = 160/175 (91%)
 Strand = Plus / Plus

                                                                            
Query: 314      cgagaagctcaccatgcagaacctcaacgaccgcctggcctcctacctggagaaggtgcg 373
                |||||||  |||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 21326641 cgagaaggccaccatgcagaacctcaatgaccgcctggcctcctacctggacaaggtgcg 21326700

                                                                            
Query: 374      cgccttggagcaggccaacggtgacctggaggtgaagatccgcgactggtaccagaagca 433
                |||| ||||| |||||||||  |||||||||||||||||||||||||||||||||| |||
Sbjct: 21326701 cgccctggaggaggccaacgccgacctggaggtgaagatccgcgactggtaccagaggca 21326760

                                                                       
Query: 434      ggggcccgggcctgcccgcgactacagccactacttcaagaccatcgaggacctg 488
                ||  || ||||| || | |||||||||||||||||||||||||||||||||||||
Sbjct: 21326761 ggccccagggcccgctcccgactacagccactacttcaagaccatcgaggacctg 21326815



 Score =  226 bits (114), Expect = 2e-56
 Identities = 173/192 (90%), Gaps = 3/192 (1%)
 Strand = Plus / Minus

                                                                            
Query: 309      ggcaacgagaagctcaccatgcagaacctcaacgaccgcctggcctcctacctggagaag 368
                |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21479447 ggcaacgagaagatcaccatgcagaacctcaacgaccgcctggcctcctacctggagaag 21479388

                                                                            
Query: 369      gtgcgcgccttggagcaggccaacggtgacctggaggtgaagatccgcgactggtaccag 428
                ||||||||| ||||| ||||||||  ||||||||||||||||||||| ||||||||||||
Sbjct: 21479387 gtgcgcgccctggaggaggccaacactgacctggaggtgaagatccgtgactggtaccag 21479328

                                                                            
Query: 429      aagcaggggcc---cgggcctgcccgcgactacagccactacttcaagaccatcgaggac 485
                |||||| | ||   | | || |  ||||||||||||| ||||||||||||||||||||| 
Sbjct: 21479327 aagcagagccccagcagcccggagcgcgactacagcccctacttcaagaccatcgaggag 21479268

                            
Query: 486      ctgcgggacaag 497
                || |||||||||
Sbjct: 21479267 ctccgggacaag 21479256



 Score =  216 bits (109), Expect = 2e-53
 Identities = 133/141 (94%)
 Strand = Plus / Minus

                                                                            
Query: 598      ccctgcgcctgagcgtggaggccgacatcaacggcctgcgcagggtgctggacgagctga 657
                ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21844461 ccctgcgccagagcgtggaggccgacatcaacggcctgcgcagggtgctggacgagctga 21844402

                                                                            
Query: 658      ccctggccaggaccgacctggagctgcagatcgaaggcctgaaggaagagctggcctacc 717
                ||||| ||| ||||||||||||| ||||||| ||| ||||||| || |||||||||||||
Sbjct: 21844401 ccctgaccaagaccgacctggagatgcagattgaaagcctgaatgaggagctggcctacc 21844342

                                     
Query: 718      tgaagaagaaccacgaggagg 738
                |||||||||||||||||||||
Sbjct: 21844341 tgaagaagaaccacgaggagg 21844321



 Score =  204 bits (103), Expect = 8e-50
 Identities = 172/195 (88%)
 Strand = Plus / Plus

                                                                            
Query: 303      ctggcgggcaacgagaagctcaccatgcagaacctcaacgaccgcctggcctcctacctg 362
                |||| ||||| ||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 21339791 ctggtgggcagcgagaaggtgaccatgcagaacctcaacgaccgcctggcctcctacctg 21339850

                                                                            
Query: 363      gagaaggtgcgcgccttggagcaggccaacggtgacctggaggtgaagatccgcgactgg 422
                || |||||||||||| ||||| |||||||||  |||||||||||||||||||||||||||
Sbjct: 21339851 gacaaggtgcgcgccctggaggaggccaacgccgacctggaggtgaagatccgcgactgg 21339910

                                                                            
Query: 423      taccagaagcaggggcccgggcctgcccgcgactacagccactacttcaagaccatcgag 482
                ||||||| |||| |||| |      ||   |||||||||| |||||||||||||||||||
Sbjct: 21339911 taccagaggcagcggccggctgagtccaaggactacagcccctacttcaagaccatcgag 21339970

                               
Query: 483      gacctgcgggacaag 497
                ||||||||| |||||
Sbjct: 21339971 gacctgcggaacaag 21339985



 Score =  194 bits (98), Expect = 7e-47
 Identities = 169/192 (88%), Gaps = 3/192 (1%)
 Strand = Plus / Minus

                                                                            
Query: 309      ggcaacgagaagctcaccatgcagaacctcaacgaccgcctggcctcctacctggagaag 368
                |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 21494024 ggcaacgagaagatcaccatgcagaacctcaacgaccgcctggcctcctacctggacaag 21493965

                                                                            
Query: 369      gtgcgcgccttggagcaggccaacggtgacctggaggtgaagatccgcgactggtaccag 428
                ||||||||| ||||| |||||||||  |||||||||||||||||||  ||||||||| ||
Sbjct: 21493964 gtgcgcgccctggaggaggccaacgccgacctggaggtgaagatccatgactggtacaag 21493905

                                                                            
Query: 429      aagcaggggcc---cgggcctgcccgcgactacagccactacttcaagaccatcgaggac 485
                |||||| | ||   | | || |  ||||||||||||| ||||||||||||||| ||||| 
Sbjct: 21493904 aagcagagccccagcagcccggagcgcgactacagcccctacttcaagaccatggaggag 21493845

                            
Query: 486      ctgcgggacaag 497
                || |||||||||
Sbjct: 21493844 ctccgggacaag 21493833



 Score =  192 bits (97), Expect = 3e-46
 Identities = 130/141 (92%)
 Strand = Plus / Minus

                                                                            
Query: 598      ccctgcgcctgagcgtggaggccgacatcaacggcctgcgcagggtgctggacgagctga 657
                ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 21477790 ccctgcgccagagcgtggaggccgacatcaacggcctgcgcagggtgctggatgagctga 21477731

                                                                            
Query: 658      ccctggccaggaccgacctggagctgcagatcgaaggcctgaaggaagagctggcctacc 717
                || || ||| ||||||||||||| ||||||||||  ||||||| || |||||||||| ||
Sbjct: 21477730 ccttgaccaagaccgacctggagatgcagatcgagagcctgaacgaggagctggccttcc 21477671

                                     
Query: 718      tgaagaagaaccacgaggagg 738
                |||||||||||||||||||||
Sbjct: 21477670 tgaagaagaaccacgaggagg 21477650



 Score =  182 bits (92), Expect = 3e-43
 Identities = 134/148 (90%)
 Strand = Plus / Minus

                                                                            
Query: 591      gagcaggccctgcgcctgagcgtggaggccgacatcaacggcctgcgcagggtgctggac 650
                |||| ||| ||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 21492854 gagctggcgctgcgccagggcgtggaggccgacatcaacggcctgcgcagggtgctggac 21492795

                                                                            
Query: 651      gagctgaccctggccaggaccgacctggagctgcagatcgaaggcctgaaggaagagctg 710
                ||||||||| || ||| ||| ||||||||| ||||||||||  ||||||| || ||||||
Sbjct: 21492794 gagctgaccttgaccaagactgacctggagatgcagatcgagagcctgaacgaggagctg 21492735

                                            
Query: 711      gcctacctgaagaagaaccacgaggagg 738
                |||||||||||||||||||| |||||||
Sbjct: 21492734 gcctacctgaagaagaaccatgaggagg 21492707



 Score =  178 bits (90), Expect = 4e-42
 Identities = 98/101 (97%)
 Strand = Plus / Plus

                                                                            
Query: 1025     gaaagccgccctggaaggcacgctggcggaaacggaagctcgcttcggagcccagctggc 1084
                |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 21539895 gaaagccgccctggaaggcacgctggcggaaacggaggctcgcttcggagcccagctggc 21539954

                                                         
Query: 1085     acagatccaggcgctgatcagtgggatcgaaccccanctga 1125
                ||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 21539955 acagatccaggcgctgatcagtgggatcgaagcccagctga 21539995



 Score =  174 bits (88), Expect = 7e-41
 Identities = 127/140 (90%)
 Strand = Plus / Plus

                                                                            
Query: 599      cctgcgcctgagcgtggaggccgacatcaacggcctgcgcagggtgctggacgagctgac 658
                ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 21342011 cctgcgcatgagcgtggaggccgacatcaacgggctgcgcagggtgctggacgagctgac 21342070

                                                                            
Query: 659      cctggccaggaccgacctggagctgcagatcgaaggcctgaaggaagagctggcctacct 718
                |||||||||  ||||||||||| ||||||||||  |||| ||||| ||||||||||||||
Sbjct: 21342071 cctggccagagccgacctggagatgcagatcgagagcctcaaggaggagctggcctacct 21342130

                                    
Query: 719      gaagaagaaccacgaggagg 738
                    ||||||||||||||||
Sbjct: 21342131 ccgaaagaaccacgaggagg 21342150



 Score =  172 bits (87), Expect = 3e-40
 Identities = 87/87 (100%)
 Strand = Plus / Plus

                                                                            
Query: 496      agattctcggtgccaccattgagaactccaagatagtcctgcagatcgacaacgcccgtc 555
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21538664 agattctcggtgccaccattgagaactccaagatagtcctgcagatcgacaacgcccgtc 21538723

                                           
Query: 556      tggctgcagatgacttccgaaccaagt 582
                |||||||||||||||||||||||||||
Sbjct: 21538724 tggctgcagatgacttccgaaccaagt 21538750



 Score =  167 bits (84), Expect = 2e-38
 Identities = 126/140 (90%)
 Strand = Plus / Plus

                                                                            
Query: 599      cctgcgcctgagcgtggaggccgacatcaacggcctgcgcagggtgctggacgagctgac 658
                ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 21320070 cctgcgcatgagcgtggaggccgacatcaacgggctgcgcagggtgctggacgagctgac 21320129

                                                                            
Query: 659      cctggccaggaccgacctggagctgcagatcgaaggcctgaaggaagagctggcctacct 718
                |||||||||  ||||||||||| ||||||||||   ||| ||||| ||||||||||||||
Sbjct: 21320130 cctggccagagccgacctggagatgcagatcgagaacctcaaggaggagctggcctacct 21320189

                                    
Query: 719      gaagaagaaccacgaggagg 738
                    ||||||||||||||||
Sbjct: 21320190 ccgaaagaaccacgaggagg 21320209



 Score =  165 bits (83), Expect = 7e-38
 Identities = 128/143 (89%)
 Strand = Plus / Minus

                                                                            
Query: 596      ggccctgcgcctgagcgtggaggccgacatcaacggcctgcgcagggtgctggacgagct 655
                ||||||| ||| || ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 21883754 ggccctgtgccagaacgtggaggccgacatcaacgggctgcgcagggtgctggacgagct 21883695

                                                                            
Query: 656      gaccctggccaggaccgacctggagctgcagatcgaaggcctgaaggaagagctggccta 715
                |||||||| |||  |||||||||||   ||||||||   |||||| || |||||||||||
Sbjct: 21883694 gaccctggtcagagccgacctggagacccagatcgagaccctgaacgaggagctggccta 21883635

                                       
Query: 716      cctgaagaagaaccacgaggagg 738
                |||||||||||||||||||||||
Sbjct: 21883634 cctgaagaagaaccacgaggagg 21883612



 Score =  163 bits (82), Expect = 3e-37
 Identities = 139/158 (87%)
 Strand = Plus / Plus

                                                                            
Query: 581      gttcgagacagagcaggccctgcgcctgagcgtggaggccgacatcaacggcctgcgcag 640
                ||||||||| ||||||||||||||  |||||||||||||||||||||| || ||||||||
Sbjct: 21328325 gttcgagacggagcaggccctgcgtgtgagcgtggaggccgacatcaatgggctgcgcag 21328384

                                                                            
Query: 641      ggtgctggacgagctgaccctggccaggaccgacctggagctgcagatcgaaggcctgaa 700
                ||||||||| |||||||||||||||||  |||| |||||| ||||||||||   ||| ||
Sbjct: 21328385 ggtgctggatgagctgaccctggccagagccgatctggagatgcagatcgagaacctcaa 21328444

                                                      
Query: 701      ggaagagctggcctacctgaagaagaaccacgaggagg 738
                ||| ||||||||||||||    ||||||||||||||||
Sbjct: 21328445 ggaggagctggcctacctccgaaagaaccacgaggagg 21328482



 Score =  121 bits (61), Expect = 9e-25
 Identities = 94/105 (89%)
 Strand = Plus / Minus

                                                                            
Query: 309      ggcaacgagaagctcaccatgcagaacctcaacgaccgcctggcctcctacctggagaag 368
                |||||||||||| | ||||||||||||||||| ||||||||||||||||||||||| || 
Sbjct: 21785280 ggcaacgagaaggtgaccatgcagaacctcaatgaccgcctggcctcctacctggacaac 21785221

                                                             
Query: 369      gtgcgcgccttggagcaggccaacggtgacctggaggtgaagatc 413
                ||||||||| ||||| |||||||||  |||||||||  |||||||
Sbjct: 21785220 gtgcgcgccctggaggaggccaacgccgacctggagcagaagatc 21785176



 Score =  121 bits (61), Expect = 9e-25
 Identities = 94/105 (89%)
 Strand = Plus / Minus

                                                                            
Query: 309      ggcaacgagaagctcaccatgcagaacctcaacgaccgcctggcctcctacctggagaag 368
                |||||||||||| | ||||||||||||||||| ||||||||||||||||||||||| || 
Sbjct: 21811601 ggcaacgagaaggtgaccatgcagaacctcaatgaccgcctggcctcctacctggacaac 21811542

                                                             
Query: 369      gtgcgcgccttggagcaggccaacggtgacctggaggtgaagatc 413
                ||||||||| ||||| |||||||||  |||||||||  |||||||
Sbjct: 21811541 gtgcgcgccctggaggaggccaacgccgacctggagcagaagatc 21811497



 Score =  107 bits (54), Expect = 1e-20
 Identities = 66/70 (94%)
 Strand = Plus / Minus

                                                                            
Query: 324      accatgcagaacctcaacgaccgcctggcctcctacctggagaaggtgcgcgccttggag 383
                ||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 21958899 accatgcggaacctcaacgaccgcctggcctcctacctggacaaggtgcgcgccctggag 21958840

                          
Query: 384      caggccaacg 393
                 |||||||||
Sbjct: 21958839 gaggccaacg 21958830



 Score = 85.7 bits (43), Expect = 5e-14
 Identities = 61/67 (91%)
 Strand = Plus / Minus

                                                                            
Query: 672      gacctggagctgcagatcgaaggcctgaaggaagagctggcctacctgaagaagaaccac 731
                ||||||||| ||||||||||  ||||||| || |||||||||||||||||||||||||| 
Sbjct: 21444549 gacctggagatgcagatcgagagcctgaacgaggagctggcctacctgaagaagaaccat 21444490

                       
Query: 732      gaggagg 738
                |||||||
Sbjct: 21444489 gaggagg 21444483



 Score = 81.8 bits (41), Expect = 8e-13
 Identities = 68/77 (88%)
 Strand = Plus / Minus

                                                                            
Query: 324      accatgcagaacctcaacgaccgcctggcctcctacctggagaaggtgcgcgccttggag 383
                ||||||||||||||||| |||||||||||||||||||||||  | ||||| ||  |||||
Sbjct: 21799553 accatgcagaacctcaatgaccgcctggcctcctacctggaccatgtgcgtgctctggag 21799494

                                 
Query: 384      caggccaacggtgacct 400
                 ||||||||| ||||||
Sbjct: 21799493 gaggccaacgctgacct 21799477



 Score = 81.8 bits (41), Expect = 8e-13
 Identities = 107/129 (82%)
 Strand = Plus / Minus

                                                                            
Query: 610      gcgtggaggccgacatcaacggcctgcgcagggtgctggacgagctgaccctggccagga 669
                ||||||| || ||||||| ||| |||||| |||||||||||||||||||||||  |||||
Sbjct: 21810030 gcgtggacgcggacatcagcggtctgcgccgggtgctggacgagctgaccctgtgcagga 21809971

                                                                            
Query: 670      ccgacctggagctgcagatcgaaggcctgaaggaagagctggcctacctgaagaagaacc 729
                ||||| | ||| | ||| | ||   |||||  || |||||||| ||||| |||||||| |
Sbjct: 21809970 ccgacttagagattcagctggagaccctgagcgaggagctggcttacctcaagaagaatc 21809911

                         
Query: 730      acgaggagg 738
                |||||||||
Sbjct: 21809910 acgaggagg 21809902



 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 70/81 (86%)
 Strand = Plus / Minus

                                                                            
Query: 324      accatgcagaacctcaacgaccgcctggcctcctacctggagaaggtgcgcgccttggag 383
                ||||||||||||||||| ||||||||||||   ||||| || |||||  | |||||||||
Sbjct: 22060713 accatgcagaacctcaatgaccgcctggccaattacctagacaaggtcagggccttggag 22060654

                                     
Query: 384      caggccaacggtgacctggag 404
                 ||||||||| ||||||||||
Sbjct: 22060653 gaggccaacgctgacctggag 22060633



 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 107/131 (81%)
 Strand = Plus / Minus

                                                                            
Query: 608      gagcgtggaggccgacatcaacggcctgcgcagggtgctggacgagctgaccctggccag 667
                ||||||||| |||||||||||||||||||| |  || ||||||||  ||||| || |  |
Sbjct: 22059210 gagcgtggaagccgacatcaacggcctgcggaaagtcctggacgacttgaccatgactcg 22059151

                                                                            
Query: 668      gaccgacctggagctgcagatcgaaggcctgaaggaagagctggcctacctgaagaagaa 727
                  | ||||| ||| ||||||| ||   ||||  ||| |||||| ||||||||||||||||
Sbjct: 22059150 ctcggacctcgagatgcagatggagaacctggtggaggagctgacctacctgaagaagaa 22059091

                           
Query: 728      ccacgaggagg 738
                |||||||||||
Sbjct: 22059090 ccacgaggagg 22059080



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 65/76 (85%)
 Strand = Plus / Minus

                                                                            
Query: 945      cagatcagcaagacggaagtcaccgatctgcggcgcaccctccagggtctggagatcgag 1004
                |||| ||||||||||||  |||| || ||  |||| || |||||||| ||||||||||||
Sbjct: 21477208 cagaccagcaagacggagatcacggagctcaggcgaacactccagggcctggagatcgag 21477149

                                
Query: 1005     ctgcagtctcagctca 1020
                |||||||| |||||||
Sbjct: 21477148 ctgcagtcccagctca 21477133



 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                                   
Query: 612      gtggaggccgacatcaacggcctgcgcagggtgctggacgagctgaccctg 662
                |||||| | |||||||| |||||||||||| | ||||||||||||||||||
Sbjct: 21407848 gtggagtcagacatcaatggcctgcgcaggatcctggacgagctgaccctg 21407798



 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 57/66 (86%)
 Strand = Plus / Minus

                                                                            
Query: 309      ggcaacgagaagctcaccatgcagaacctcaacgaccgcctggcctcctacctggagaag 368
                ||||||||||||   |||||||||  ||| |||||||| ||||||  |||||||||||||
Sbjct: 21462897 ggcaacgagaaggagaccatgcagttcctgaacgaccggctggccaactacctggagaag 21462838

                      
Query: 369      gtgcgc 374
                ||||||
Sbjct: 21462837 gtgcgc 21462832



 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 66/78 (84%)
 Strand = Plus / Minus

                                                                            
Query: 327      atgcagaacctcaacgaccgcctggcctcctacctggagaaggtgcgcgccttggagcag 386
                |||||||| ||||| ||||||||||| ||||||||||| || ||||| ||  ||||| ||
Sbjct: 21829560 atgcagaatctcaatgaccgcctggcatcctacctggataacgtgcgagctctggaggag 21829501

                                  
Query: 387      gccaacggtgacctggag 404
                || || | ||||||||||
Sbjct: 21829500 gcaaatgctgacctggag 21829483


>Sscrofa_Chr05 
||          Length = 111506441

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                                
Query: 324      accatgcagaacctcaacgaccgcctggcctcctacctggagaaggtg 371
                ||||||||| |||| || ||||||||||||||||||||||||| ||||
Sbjct: 18726338 accatgcaggacctgaatgaccgcctggcctcctacctggagagggtg 18726385


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,478,033
Number of extensions: 184
Number of successful extensions: 184
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 35
Length of query: 1125
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1104
Effective length of database: 2,808,413,156
Effective search space: 3100488124224
Effective search space used: 3100488124224
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)