Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001868
(1094 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001015600.1| keratin, type I cytoskeletal 19 [Bos taurus]. 373 e-135
Alignment gi|NP_001098792.1| keratin, type I cytoskeletal 17 [Bos taurus]. 301 e-103
Alignment gi|NP_001124219.1| keratin, type I cytoskeletal 13 [Bos taurus]. 281 e-100
Alignment gi|NP_001160047.1| keratin, type I cytoskeletal 14 [Bos taurus]. 296 e-100
Alignment gi|XP_002696036.1| PREDICTED: keratin 13-like [Bos taurus]. 276 1e-95
Alignment gi|XP_002702249.1| PREDICTED: keratin 13-like [Bos taurus]. 276 1e-95
Alignment gi|XP_002696056.1| PREDICTED: keratin 12-like [Bos taurus]. 258 2e-88
Alignment gi|XP_001255462.1| PREDICTED: keratin 12-like [Bos taurus]. 258 2e-88
Alignment gi|XP_001788780.1| PREDICTED: keratin 13-like isoform 2 [Bos ta... 247 2e-83
Alignment gi|NP_776802.1| keratin, type I cytoskeletal 10 [Bos taurus]. 246 5e-83
>ref|NP_001015600.1| keratin, type I cytoskeletal 19 [Bos taurus].
Length = 399
Score = 373 bits (958), Expect(2) = e-135
Identities = 199/259 (76%), Positives = 208/259 (80%)
Frame = +1
Query: 118 FGGLGGGSVRFSAGGAFRAPSIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 297
FGG+GGGS+RF AGGAFRAPSIH
Sbjct: 15 FGGMGGGSMRFGAGGAFRAPSIHGGSGGRGVSVSSARFVSSSSGGYGGGYGGALATSDGL 74
Query: 298 XXXXXXXXXXXXNEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARD 477
NEKLTMQNLNDRLASYLEKVRALE+ANGDLEVKIRDWYQKQGPGPARD
Sbjct: 75 LAG---------NEKLTMQNLNDRLASYLEKVRALEEANGDLEVKIRDWYQKQGPGPARD 125
Query: 478 YSHYFKTIEDLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGL 657
YSHYFKTIEDLRD+ILGATIENSKIVLQIDNARLAADDFRTKFETEQALR+SVEADINGL
Sbjct: 126 YSHYFKTIEDLRDQILGATIENSKIVLQIDNARLAADDFRTKFETEQALRMSVEADINGL 185
Query: 658 RRVLDELTLARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLA 837
RRVLDELTLARTDLE+QIEGLKEELAYLKKNHEEE+S LKGQVGGQVSVEVDSAPGIDLA
Sbjct: 186 RRVLDELTLARTDLEMQIEGLKEELAYLKKNHEEEMSVLKGQVGGQVSVEVDSAPGIDLA 245
Query: 838 KILSDMRSQYEVMAEQNRK 894
KILSDMRSQYEV+AE+NRK
Sbjct: 246 KILSDMRSQYEVIAEKNRK 264
Score = 126 bits (317), Expect(2) = e-135
Identities = 64/68 (94%), Positives = 67/68 (98%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
KDAEAWF S+TEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQL+MKAALEGTL
Sbjct: 264 KDAEAWFISQTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTL 323
Query: 1071 AKTEARFG 1094
A+TEARFG
Sbjct: 324 AETEARFG 331
>ref|NP_001098792.1| keratin, type I cytoskeletal 17 [Bos taurus].
Length = 441
Score = 301 bits (771), Expect(2) = e-103
Identities = 147/186 (79%), Positives = 173/186 (93%)
Frame = +1
Query: 337 EKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLRD 516
EK TMQNLNDRLASYL+KVRALE+AN +LE+KIRDWYQKQ PGPA DYS YFKTIEDLR+
Sbjct: 92 EKATMQNLNDRLASYLDKVRALEEANTELELKIRDWYQKQAPGPAPDYSSYFKTIEDLRN 151
Query: 517 KILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLARTD 696
KI AT++N+ ++LQIDNARLAADDFRTKFETEQALR+SVEADINGLRRVLDELTLAR D
Sbjct: 152 KIHTATVDNANLLLQIDNARLAADDFRTKFETEQALRVSVEADINGLRRVLDELTLARAD 211
Query: 697 LELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEVM 876
LE+QIE LKEELAYL+KNHEEE+ AL+GQVGG+++VE+D+APG+DL++IL++MR QYE M
Sbjct: 212 LEMQIENLKEELAYLRKNHEEEMKALRGQVGGEINVEMDAAPGVDLSRILNEMRDQYEKM 271
Query: 877 AEQNRK 894
AE+NRK
Sbjct: 272 AEKNRK 277
Score = 93.6 bits (231), Expect(2) = e-103
Identities = 46/67 (68%), Positives = 59/67 (88%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
KDAE WF S+TEELNREVA ++E +Q K+E+++LRRTLQ LEIELQSQL+MKA+LEG+L
Sbjct: 277 KDAEDWFFSKTEELNREVATNSELVQSGKSEISELRRTLQALEIELQSQLSMKASLEGSL 336
Query: 1071 AKTEARF 1091
A+TE R+
Sbjct: 337 AETENRY 343
>ref|NP_001124219.1| keratin, type I cytoskeletal 13 [Bos taurus].
Length = 453
Score = 281 bits (720), Expect(2) = e-100
Identities = 139/188 (73%), Positives = 162/188 (86%), Gaps = 1/188 (0%)
Frame = +1
Query: 334 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGP-GPARDYSHYFKTIEDL 510
NEK+TMQNLNDRLASYLEKVRALE+AN DLEVKIRDWYQ+Q P P RDYS YFKTI++L
Sbjct: 102 NEKITMQNLNDRLASYLEKVRALEEANADLEVKIRDWYQRQSPTSPERDYSPYFKTIDEL 161
Query: 511 RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 690
RDKIL A I+NS+++L+IDNARLAADDFR K E E ALR SVEADINGLRRVLDELTL +
Sbjct: 162 RDKILAAAIKNSQVILEIDNARLAADDFRLKHENEMALRQSVEADINGLRRVLDELTLTK 221
Query: 691 TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 870
TDLE+QIE L EELAYLKKNHEEE+ Q+ GQV+VE+D+AP +DL ++LS+MR QYE
Sbjct: 222 TDLEMQIESLNEELAYLKKNHEEEMKEFSNQLAGQVNVEMDAAPAVDLTRVLSEMREQYE 281
Query: 871 VMAEQNRK 894
MAE+NR+
Sbjct: 282 AMAEKNRR 289
Score = 104 bits (260), Expect(2) = e-100
Identities = 50/67 (74%), Positives = 60/67 (89%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
+DAEAWF S+TEELN+EVA +TE +Q SKTE+TDLRRT+QGLEIELQSQL+MKA LE TL
Sbjct: 289 RDAEAWFFSKTEELNKEVASNTEMIQTSKTEITDLRRTIQGLEIELQSQLSMKAGLESTL 348
Query: 1071 AKTEARF 1091
A+TE R+
Sbjct: 349 AETECRY 355
>ref|NP_001160047.1| keratin, type I cytoskeletal 14 [Bos taurus].
Length = 477
Score = 296 bits (757), Expect(2) = e-100
Identities = 145/187 (77%), Positives = 172/187 (91%)
Frame = +1
Query: 334 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLR 513
+EK+TMQNLNDRLASYL+KVRALE+AN DLEVKIRDWYQ+Q P +DYS YFKTIEDLR
Sbjct: 120 SEKVTMQNLNDRLASYLDKVRALEEANADLEVKIRDWYQRQRPAEIKDYSPYFKTIEDLR 179
Query: 514 DKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLART 693
+KIL AT++N+ +VLQIDNARLAADDFRTK+ETE LRLSVEADINGLRRVLDELTLAR
Sbjct: 180 NKILTATVDNANVVLQIDNARLAADDFRTKYETELNLRLSVEADINGLRRVLDELTLARA 239
Query: 694 DLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEV 873
DLE+QIE LKEELAYL+KNHEEE+++L+GQVGG V+VE+D+APG+DL++IL++MR QYE
Sbjct: 240 DLEMQIESLKEELAYLRKNHEEEMNSLRGQVGGDVNVEMDAAPGVDLSRILNEMRDQYEK 299
Query: 874 MAEQNRK 894
MAE+NRK
Sbjct: 300 MAEKNRK 306
Score = 88.6 bits (218), Expect(2) = e-100
Identities = 43/67 (64%), Positives = 57/67 (85%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
KDAE WF S+TEELNREVA ++E +Q K+E+++LRRTLQ LEIELQSQL+MKA+LE +L
Sbjct: 306 KDAEDWFFSKTEELNREVATNSELVQSGKSEISELRRTLQNLEIELQSQLSMKASLENSL 365
Query: 1071 AKTEARF 1091
+T+ R+
Sbjct: 366 EETKGRY 372
>ref|XP_002696036.1| PREDICTED: keratin 13-like [Bos taurus].
Length = 434
Score = 276 bits (707), Expect(2) = 1e-95
Identities = 138/188 (73%), Positives = 162/188 (86%), Gaps = 1/188 (0%)
Frame = +1
Query: 334 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGP-GPARDYSHYFKTIEDL 510
NEK+TMQNLNDRLASYLEKVRALE+AN DLEVKIRDW+ KQ P P RDYS YFKTI++L
Sbjct: 99 NEKITMQNLNDRLASYLEKVRALEEANADLEVKIRDWHLKQTPTSPERDYSPYFKTIDEL 158
Query: 511 RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 690
RDKIL ATI+N++I+L+IDNARLAADDFR K+E E LR SVEADINGLRRVLDELTL +
Sbjct: 159 RDKILAATIDNNRIILEIDNARLAADDFRLKYENELTLRQSVEADINGLRRVLDELTLTK 218
Query: 691 TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 870
TDLE+QIE L EELAYLKKNHEEE+ Q+ GQV+VE+D+ PGIDL ++L++MR QYE
Sbjct: 219 TDLEMQIESLNEELAYLKKNHEEEMKEFSKQMVGQVNVEMDATPGIDLTRVLAEMREQYE 278
Query: 871 VMAEQNRK 894
MAE+NR+
Sbjct: 279 AMAEKNRR 286
Score = 92.8 bits (229), Expect(2) = 1e-95
Identities = 45/67 (67%), Positives = 55/67 (82%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
+DAE WF S++ ELN+EV T +Q SKTE+T+LRRTLQGLEIELQSQL+MKA LE TL
Sbjct: 286 RDAEEWFHSKSAELNKEVTSSTALIQTSKTEITELRRTLQGLEIELQSQLSMKAGLESTL 345
Query: 1071 AKTEARF 1091
A+TE R+
Sbjct: 346 AETECRY 352
>ref|XP_002702249.1| PREDICTED: keratin 13-like [Bos taurus].
Length = 434
Score = 276 bits (707), Expect(2) = 1e-95
Identities = 138/188 (73%), Positives = 162/188 (86%), Gaps = 1/188 (0%)
Frame = +1
Query: 334 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGP-GPARDYSHYFKTIEDL 510
NEK+TMQNLNDRLASYLEKVRALE+AN DLEVKIRDW+ KQ P P RDYS YFKTI++L
Sbjct: 99 NEKITMQNLNDRLASYLEKVRALEEANADLEVKIRDWHLKQTPTSPERDYSPYFKTIDEL 158
Query: 511 RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 690
RDKIL ATI+N++I+L+IDNARLAADDFR K+E E LR SVEADINGLRRVLDELTL +
Sbjct: 159 RDKILAATIDNNRIILEIDNARLAADDFRLKYENELTLRQSVEADINGLRRVLDELTLTK 218
Query: 691 TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 870
TDLE+QIE L EELAYLKKNHEEE+ Q+ GQV+VE+D+ PGIDL ++L++MR QYE
Sbjct: 219 TDLEMQIESLNEELAYLKKNHEEEMKEFSKQMVGQVNVEMDATPGIDLTRVLAEMREQYE 278
Query: 871 VMAEQNRK 894
MAE+NR+
Sbjct: 279 AMAEKNRR 286
Score = 92.8 bits (229), Expect(2) = 1e-95
Identities = 45/67 (67%), Positives = 55/67 (82%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
+DAE WF S++ ELN+EV T +Q SKTE+T+LRRTLQGLEIELQSQL+MKA LE TL
Sbjct: 286 RDAEEWFHSKSAELNKEVTSSTALIQTSKTEITELRRTLQGLEIELQSQLSMKAGLESTL 345
Query: 1071 AKTEARF 1091
A+TE R+
Sbjct: 346 AETECRY 352
>ref|XP_002696056.1| PREDICTED: keratin 12-like [Bos taurus].
Length = 532
Score = 258 bits (659), Expect(2) = 2e-88
Identities = 131/192 (68%), Positives = 158/192 (82%), Gaps = 5/192 (2%)
Frame = +1
Query: 334 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQG-----PGPARDYSHYFKT 498
+EK TM+NLNDRLASYL+KVRALE+AN DLE KIR+WY+ +G PG DYS Y+
Sbjct: 161 SEKETMKNLNDRLASYLDKVRALEEANTDLETKIREWYETRGSGTGDPGSQNDYSKYYPL 220
Query: 499 IEDLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDEL 678
IEDLR+KI+ A IEN++++LQIDNARLAADDFR K+E E AL +VEADINGLRRVLDEL
Sbjct: 221 IEDLRNKIISANIENAQLILQIDNARLAADDFRMKYENELALCQNVEADINGLRRVLDEL 280
Query: 679 TLARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMR 858
TLAR DLE QIE L EELAYLKKNHEEE+ + + GQVSVE+D+APG+DL ++L+DMR
Sbjct: 281 TLARADLETQIETLNEELAYLKKNHEEELQSCRAGGPGQVSVEMDAAPGVDLTRLLNDMR 340
Query: 859 SQYEVMAEQNRK 894
+QYE +AEQNRK
Sbjct: 341 AQYETIAEQNRK 352
Score = 87.0 bits (214), Expect(2) = 2e-88
Identities = 43/67 (64%), Positives = 54/67 (80%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
KDAEAWF ++ EL +E++ +TEQLQ SK+EVTDLRR LQ LEIELQSQL MK +LE +L
Sbjct: 352 KDAEAWFIEKSGELRKEISSNTEQLQSSKSEVTDLRRALQNLEIELQSQLAMKKSLEDSL 411
Query: 1071 AKTEARF 1091
A+TE +
Sbjct: 412 AETEGDY 418
>ref|XP_001255462.1| PREDICTED: keratin 12-like [Bos taurus].
Length = 532
Score = 258 bits (659), Expect(2) = 2e-88
Identities = 131/192 (68%), Positives = 158/192 (82%), Gaps = 5/192 (2%)
Frame = +1
Query: 334 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQG-----PGPARDYSHYFKT 498
+EK TM+NLNDRLASYL+KVRALE+AN DLE KIR+WY+ +G PG DYS Y+
Sbjct: 161 SEKETMKNLNDRLASYLDKVRALEEANTDLETKIREWYETRGSGTGDPGSQNDYSKYYPL 220
Query: 499 IEDLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDEL 678
IEDLR+KI+ A IEN++++LQIDNARLAADDFR K+E E AL +VEADINGLRRVLDEL
Sbjct: 221 IEDLRNKIISANIENAQLILQIDNARLAADDFRMKYENELALCQNVEADINGLRRVLDEL 280
Query: 679 TLARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMR 858
TLAR DLE QIE L EELAYLKKNHEEE+ + + GQVSVE+D+APG+DL ++L+DMR
Sbjct: 281 TLARADLETQIETLNEELAYLKKNHEEELQSCRAGGPGQVSVEMDAAPGVDLTRLLNDMR 340
Query: 859 SQYEVMAEQNRK 894
+QYE +AEQNRK
Sbjct: 341 AQYETIAEQNRK 352
Score = 87.0 bits (214), Expect(2) = 2e-88
Identities = 43/67 (64%), Positives = 54/67 (80%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
KDAEAWF ++ EL +E++ +TEQLQ SK+EVTDLRR LQ LEIELQSQL MK +LE +L
Sbjct: 352 KDAEAWFIEKSGELRKEISSNTEQLQSSKSEVTDLRRALQNLEIELQSQLAMKKSLEDSL 411
Query: 1071 AKTEARF 1091
A+TE +
Sbjct: 412 AETEGDY 418
>ref|XP_001788780.1| PREDICTED: keratin 13-like isoform 2 [Bos taurus].
Length = 566
Score = 247 bits (631), Expect(2) = 2e-83
Identities = 122/190 (64%), Positives = 158/190 (83%), Gaps = 3/190 (1%)
Frame = +1
Query: 334 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPG---PARDYSHYFKTIE 504
NEK+TMQNLNDRLASYL+KVRALE++N +LEVKI++WY+K G RDYS Y++TI+
Sbjct: 126 NEKITMQNLNDRLASYLDKVRALEESNYELEVKIKEWYEKYGNSRQREPRDYSKYYQTID 185
Query: 505 DLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTL 684
DL+++I T +N+ I++Q+DNARLAADDFR K+E E LR SVEADINGLRRVLDELTL
Sbjct: 186 DLKNQIFNLTTDNANILIQVDNARLAADDFRLKYENEVTLRQSVEADINGLRRVLDELTL 245
Query: 685 ARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQ 864
+TDLE+QIE L EELAYLKKNHEEE+ L+ G V+VE+++APG+DL ++L++MRSQ
Sbjct: 246 TKTDLEMQIESLTEELAYLKKNHEEEMRDLQNVSTGDVNVEMNAAPGVDLTELLNNMRSQ 305
Query: 865 YEVMAEQNRK 894
YE +AE+NR+
Sbjct: 306 YEQLAEKNRR 315
Score = 81.3 bits (199), Expect(2) = 2e-83
Identities = 37/67 (55%), Positives = 53/67 (79%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
+DAEAWF +++EL E+ + EQ+ K+E+T+LRRT+QGLEIELQSQL +K +LE +L
Sbjct: 315 RDAEAWFNEKSKELTTEINSNLEQVSSHKSEITELRRTIQGLEIELQSQLALKQSLEASL 374
Query: 1071 AKTEARF 1091
A+TE R+
Sbjct: 375 AETEGRY 381
>ref|NP_776802.1| keratin, type I cytoskeletal 10 [Bos taurus].
Length = 526
Score = 246 bits (628), Expect(2) = 5e-83
Identities = 121/190 (63%), Positives = 158/190 (83%), Gaps = 3/190 (1%)
Frame = +1
Query: 334 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPG---PARDYSHYFKTIE 504
N+K+TMQNLNDRLASYL+KVRALE++N +LEVKI++WY+K G RDYS Y++TI+
Sbjct: 126 NQKITMQNLNDRLASYLDKVRALEESNYELEVKIKEWYEKYGNSRQREPRDYSKYYQTID 185
Query: 505 DLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTL 684
DL+++I T +N+ I++Q+DNARLAADDFR K+E E LR SVEADINGLRRVLDELTL
Sbjct: 186 DLKNQIFNLTTDNANILIQVDNARLAADDFRLKYENEVTLRQSVEADINGLRRVLDELTL 245
Query: 685 ARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQ 864
+TDLE+QIE L EELAYLKKNHEEE+ L+ G V+VE+++APG+DL ++L++MRSQ
Sbjct: 246 TKTDLEMQIESLTEELAYLKKNHEEEMRDLQNVSTGDVNVEMNAAPGVDLTELLNNMRSQ 305
Query: 865 YEVMAEQNRK 894
YE +AE+NR+
Sbjct: 306 YEQLAEKNRR 315
Score = 81.3 bits (199), Expect(2) = 5e-83
Identities = 37/67 (55%), Positives = 53/67 (79%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
+DAEAWF +++EL E+ + EQ+ K+E+T+LRRT+QGLEIELQSQL +K +LE +L
Sbjct: 315 RDAEAWFNEKSKELTTEINSNLEQVSSHKSEITELRRTIQGLEIELQSQLALKQSLEASL 374
Query: 1071 AKTEARF 1091
A+TE R+
Sbjct: 375 AETEGRY 381
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,284,978
Number of extensions: 978848
Number of successful extensions: 6490
Number of sequences better than 1.0e-05: 102
Number of HSP's gapped: 6277
Number of HSP's successfully gapped: 183
Length of query: 364
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 260
Effective length of database: 14,240,222
Effective search space: 3702457720
Effective search space used: 3702457720
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001868
(1094 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_548099.2| PREDICTED: similar to keratin 17n [Canis famili... 306 e-107
Alignment gi|XP_548100.1| PREDICTED: similar to type I keratin KA17 isofo... 306 e-104
Alignment gi|XP_862372.1| PREDICTED: similar to keratin 13 isoform a isof... 286 e-101
Alignment gi|XP_862399.1| PREDICTED: similar to keratin 13 isoform a isof... 286 e-101
Alignment gi|XP_548101.2| PREDICTED: similar to Keratin, type I cytoskele... 294 e-101
Alignment gi|XP_862344.1| PREDICTED: similar to keratin 13 isoform a isof... 275 4e-95
Alignment gi|XP_548106.2| PREDICTED: similar to keratin 13 isoform a isof... 275 4e-95
Alignment gi|XP_850765.1| PREDICTED: similar to keratin 13 isoform a isof... 275 1e-94
Alignment gi|XP_861773.1| PREDICTED: similar to type I keratin KA17 isofo... 261 9e-91
Alignment gi|NP_001013443.1| keratin, type I cytoskeletal 10 [Canis lupus... 249 4e-85
>ref|XP_548099.2| PREDICTED: similar to keratin 17n [Canis familiaris].
Length = 469
Score = 306 bits (783), Expect(2) = e-107
Identities = 150/187 (80%), Positives = 174/187 (93%)
Frame = +1
Query: 334 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLR 513
+EK TMQNLNDRLASYL+KVRALE+AN DLEVKI DWY+KQGPGPARDYSH+FKTIE+LR
Sbjct: 110 SEKETMQNLNDRLASYLDKVRALEEANADLEVKIHDWYKKQGPGPARDYSHFFKTIEELR 169
Query: 514 DKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLART 693
+KIL ATI+N+ +VLQIDNARLAADDFRTK+ETE LR+SVEAD NGLRRVLDELTLAR
Sbjct: 170 NKILAATIDNASLVLQIDNARLAADDFRTKYETELNLRMSVEADTNGLRRVLDELTLARA 229
Query: 694 DLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEV 873
DLE+QIE LKEELAYLKKNHEEE++AL+GQVGG VSVE+D+APG+DL++IL++MR QYE
Sbjct: 230 DLEMQIESLKEELAYLKKNHEEEMNALRGQVGGDVSVEMDAAPGVDLSRILNEMRDQYEK 289
Query: 874 MAEQNRK 894
MAE+NRK
Sbjct: 290 MAEKNRK 296
Score = 102 bits (253), Expect(2) = e-107
Identities = 50/68 (73%), Positives = 62/68 (91%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
KDAE WF S+TEELNREVA +TE LQ S+TE+T+LRR++Q LEIELQSQL+MKA+LEG+L
Sbjct: 296 KDAEDWFFSKTEELNREVATNTEALQSSRTEITELRRSVQNLEIELQSQLSMKASLEGSL 355
Query: 1071 AKTEARFG 1094
A+TEAR+G
Sbjct: 356 AETEARYG 363
>ref|XP_548100.1| PREDICTED: similar to type I keratin KA17 isoform 1 [Canis
familiaris].
Length = 433
Score = 306 bits (785), Expect(2) = e-104
Identities = 148/186 (79%), Positives = 176/186 (94%)
Frame = +1
Query: 337 EKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLRD 516
EK TMQNLNDRLASYL+KVRALE+AN +LEVKIRDWYQKQ PGPARDYSHY++TIEDL++
Sbjct: 84 EKATMQNLNDRLASYLDKVRALEEANTELEVKIRDWYQKQAPGPARDYSHYYQTIEDLKN 143
Query: 517 KILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLARTD 696
KIL AT++N+ I+LQIDNARLAADDFRTKFETEQALR+SVEAD NGLRRVLDELTL+R D
Sbjct: 144 KILTATVDNANILLQIDNARLAADDFRTKFETEQALRVSVEADTNGLRRVLDELTLSRAD 203
Query: 697 LELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEVM 876
LE+QIE LKEELAYL+KNHEEE++AL+GQVGG+++VE+D+APG+DL++ILS+MR QYE M
Sbjct: 204 LEMQIENLKEELAYLRKNHEEEMNALRGQVGGEINVEMDAAPGVDLSRILSEMRDQYEKM 263
Query: 877 AEQNRK 894
AE+NRK
Sbjct: 264 AEKNRK 269
Score = 92.4 bits (228), Expect(2) = e-104
Identities = 45/67 (67%), Positives = 59/67 (88%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
KDAE WF S+TEELNREVA ++E +Q K+E+++LRRT+Q LEIELQSQL+MKA+LEG+L
Sbjct: 269 KDAEDWFFSKTEELNREVATNSELVQSGKSEISELRRTVQALEIELQSQLSMKASLEGSL 328
Query: 1071 AKTEARF 1091
A+TE R+
Sbjct: 329 AETENRY 335
>ref|XP_862372.1| PREDICTED: similar to keratin 13 isoform a isoform 6 [Canis
familiaris].
Length = 811
Score = 286 bits (733), Expect(2) = e-101
Identities = 140/188 (74%), Positives = 164/188 (87%), Gaps = 1/188 (0%)
Frame = +1
Query: 334 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPG-PARDYSHYFKTIEDL 510
NEK+TMQNLNDRLASYL+KV ALE+ANGDLEVKIRDWYQKQ P P RDYS YFKTIE+L
Sbjct: 106 NEKITMQNLNDRLASYLDKVHALEEANGDLEVKIRDWYQKQSPSSPERDYSPYFKTIEEL 165
Query: 511 RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 690
RDKIL ATI+NS+++L+IDNARLAADDFR K+E E LR VEADINGLRRVLDELTLA+
Sbjct: 166 RDKILAATIDNSRVILEIDNARLAADDFRLKYENELTLRQGVEADINGLRRVLDELTLAK 225
Query: 691 TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 870
DLE+QIEGL EELAYLKKNHEEE+ Q+ GQV+VE+D+APG+DL ++L++MR QYE
Sbjct: 226 ADLEMQIEGLNEELAYLKKNHEEEMKEFSSQLAGQVNVEMDAAPGVDLTRVLAEMREQYE 285
Query: 871 VMAEQNRK 894
MAE+NR+
Sbjct: 286 AMAEKNRR 293
Score = 103 bits (256), Expect(2) = e-101
Identities = 49/67 (73%), Positives = 60/67 (89%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
+DAEAWF S+TEELN+EVA +TE +Q SKTE+TDLRRT+QGLEIELQSQL+MKA LE +L
Sbjct: 293 RDAEAWFFSKTEELNKEVASNTEMIQTSKTEITDLRRTMQGLEIELQSQLSMKAGLESSL 352
Query: 1071 AKTEARF 1091
A+TE R+
Sbjct: 353 AETECRY 359
Score = 275 bits (702), Expect(2) = 4e-95
Identities = 135/188 (71%), Positives = 163/188 (86%), Gaps = 1/188 (0%)
Frame = +1
Query: 334 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPG-PARDYSHYFKTIEDL 510
NEK+TMQNLNDRLASYL+KVRALE+AN +LEVKIRDW+ KQ P P RDYS Y+KTIE+L
Sbjct: 499 NEKITMQNLNDRLASYLDKVRALEEANTELEVKIRDWHLKQSPSSPERDYSPYYKTIEEL 558
Query: 511 RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 690
RDKIL ATI+N++++L+IDNARLAADDFR K+E E LR SVEADINGLRRVLDELTL++
Sbjct: 559 RDKILAATIDNNRVILEIDNARLAADDFRLKYENELTLRQSVEADINGLRRVLDELTLSK 618
Query: 691 TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 870
TDLE+QIE L EELAYLKKNHEEE+ Q+ GQV+VE+D+ PGIDL ++L++MR QYE
Sbjct: 619 TDLEMQIESLNEELAYLKKNHEEEMKEFSNQMVGQVNVEMDATPGIDLTRVLAEMREQYE 678
Query: 871 VMAEQNRK 894
MAE+NR+
Sbjct: 679 AMAEKNRR 686
Score = 93.2 bits (230), Expect(2) = 4e-95
Identities = 45/67 (67%), Positives = 56/67 (83%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
+DAE WF S++ ELN+EV+ +T +Q SKTE+T+LRRTLQGLEIELQSQL+MKA LE TL
Sbjct: 686 RDAEEWFHSKSAELNKEVSTNTAMIQTSKTEITELRRTLQGLEIELQSQLSMKAGLESTL 745
Query: 1071 AKTEARF 1091
A TE R+
Sbjct: 746 ADTECRY 752
>ref|XP_862399.1| PREDICTED: similar to keratin 13 isoform a isoform 7 [Canis
familiaris].
Length = 807
Score = 286 bits (733), Expect(2) = e-101
Identities = 140/188 (74%), Positives = 164/188 (87%), Gaps = 1/188 (0%)
Frame = +1
Query: 334 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPG-PARDYSHYFKTIEDL 510
NEK+TMQNLNDRLASYL+KV ALE+ANGDLEVKIRDWYQKQ P P RDYS YFKTIE+L
Sbjct: 102 NEKITMQNLNDRLASYLDKVHALEEANGDLEVKIRDWYQKQSPSSPERDYSPYFKTIEEL 161
Query: 511 RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 690
RDKIL ATI+NS+++L+IDNARLAADDFR K+E E LR VEADINGLRRVLDELTLA+
Sbjct: 162 RDKILAATIDNSRVILEIDNARLAADDFRLKYENELTLRQGVEADINGLRRVLDELTLAK 221
Query: 691 TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 870
DLE+QIEGL EELAYLKKNHEEE+ Q+ GQV+VE+D+APG+DL ++L++MR QYE
Sbjct: 222 ADLEMQIEGLNEELAYLKKNHEEEMKEFSSQLAGQVNVEMDAAPGVDLTRVLAEMREQYE 281
Query: 871 VMAEQNRK 894
MAE+NR+
Sbjct: 282 AMAEKNRR 289
Score = 103 bits (256), Expect(2) = e-101
Identities = 49/67 (73%), Positives = 60/67 (89%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
+DAEAWF S+TEELN+EVA +TE +Q SKTE+TDLRRT+QGLEIELQSQL+MKA LE +L
Sbjct: 289 RDAEAWFFSKTEELNKEVASNTEMIQTSKTEITDLRRTMQGLEIELQSQLSMKAGLESSL 348
Query: 1071 AKTEARF 1091
A+TE R+
Sbjct: 349 AETECRY 355
Score = 275 bits (702), Expect(2) = 4e-95
Identities = 135/188 (71%), Positives = 163/188 (86%), Gaps = 1/188 (0%)
Frame = +1
Query: 334 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPG-PARDYSHYFKTIEDL 510
NEK+TMQNLNDRLASYL+KVRALE+AN +LEVKIRDW+ KQ P P RDYS Y+KTIE+L
Sbjct: 495 NEKITMQNLNDRLASYLDKVRALEEANTELEVKIRDWHLKQSPSSPERDYSPYYKTIEEL 554
Query: 511 RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 690
RDKIL ATI+N++++L+IDNARLAADDFR K+E E LR SVEADINGLRRVLDELTL++
Sbjct: 555 RDKILAATIDNNRVILEIDNARLAADDFRLKYENELTLRQSVEADINGLRRVLDELTLSK 614
Query: 691 TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 870
TDLE+QIE L EELAYLKKNHEEE+ Q+ GQV+VE+D+ PGIDL ++L++MR QYE
Sbjct: 615 TDLEMQIESLNEELAYLKKNHEEEMKEFSNQMVGQVNVEMDATPGIDLTRVLAEMREQYE 674
Query: 871 VMAEQNRK 894
MAE+NR+
Sbjct: 675 AMAEKNRR 682
Score = 93.2 bits (230), Expect(2) = 4e-95
Identities = 45/67 (67%), Positives = 56/67 (83%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
+DAE WF S++ ELN+EV+ +T +Q SKTE+T+LRRTLQGLEIELQSQL+MKA LE TL
Sbjct: 682 RDAEEWFHSKSAELNKEVSTNTAMIQTSKTEITELRRTLQGLEIELQSQLSMKAGLESTL 741
Query: 1071 AKTEARF 1091
A TE R+
Sbjct: 742 ADTECRY 748
>ref|XP_548101.2| PREDICTED: similar to Keratin, type I cytoskeletal 16 (Cytokeratin
16) (K16) (CK 16) [Canis familiaris].
Length = 477
Score = 294 bits (753), Expect(2) = e-101
Identities = 146/187 (78%), Positives = 171/187 (91%)
Frame = +1
Query: 334 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLR 513
NEKLTMQNLNDRLASYL+KVRALE+AN +LEVKIRDWYQ+Q P A+DYS YFKTIEDLR
Sbjct: 117 NEKLTMQNLNDRLASYLDKVRALEEANTELEVKIRDWYQRQRPSEAKDYSPYFKTIEDLR 176
Query: 514 DKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLART 693
+KI+ ATIEN++ +LQIDNARLAADDFRTK+E E LR SVEADINGLRRVLDELTL+RT
Sbjct: 177 NKIITATIENAQPILQIDNARLAADDFRTKYEHELTLRQSVEADINGLRRVLDELTLSRT 236
Query: 694 DLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEV 873
DLE+QIEGLKEELAYL+KNHEEE+ AL+GQ GG VSVE+D+APG+DL++IL++MR QYE
Sbjct: 237 DLEMQIEGLKEELAYLRKNHEEEMLALRGQTGGDVSVEMDAAPGVDLSRILNEMRDQYEQ 296
Query: 874 MAEQNRK 894
MAE+NR+
Sbjct: 297 MAEKNRR 303
Score = 92.4 bits (228), Expect(2) = e-101
Identities = 44/67 (65%), Positives = 58/67 (86%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
+DAEAWF S+TEELN+EV ++E LQ ++EVT+LRRTLQGLEIELQSQL+MKA+LE +L
Sbjct: 303 RDAEAWFLSKTEELNKEVVSNSELLQSGRSEVTELRRTLQGLEIELQSQLSMKASLESSL 362
Query: 1071 AKTEARF 1091
+T+ R+
Sbjct: 363 EETKGRY 369
>ref|XP_862344.1| PREDICTED: similar to keratin 13 isoform a isoform 5 [Canis
familiaris].
Length = 692
Score = 275 bits (702), Expect(2) = 4e-95
Identities = 135/188 (71%), Positives = 163/188 (86%), Gaps = 1/188 (0%)
Frame = +1
Query: 334 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPG-PARDYSHYFKTIEDL 510
NEK+TMQNLNDRLASYL+KVRALE+AN +LEVKIRDW+ KQ P P RDYS Y+KTIE+L
Sbjct: 380 NEKITMQNLNDRLASYLDKVRALEEANTELEVKIRDWHLKQSPSSPERDYSPYYKTIEEL 439
Query: 511 RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 690
RDKIL ATI+N++++L+IDNARLAADDFR K+E E LR SVEADINGLRRVLDELTL++
Sbjct: 440 RDKILAATIDNNRVILEIDNARLAADDFRLKYENELTLRQSVEADINGLRRVLDELTLSK 499
Query: 691 TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 870
TDLE+QIE L EELAYLKKNHEEE+ Q+ GQV+VE+D+ PGIDL ++L++MR QYE
Sbjct: 500 TDLEMQIESLNEELAYLKKNHEEEMKEFSNQMVGQVNVEMDATPGIDLTRVLAEMREQYE 559
Query: 871 VMAEQNRK 894
MAE+NR+
Sbjct: 560 AMAEKNRR 567
Score = 93.2 bits (230), Expect(2) = 4e-95
Identities = 45/67 (67%), Positives = 56/67 (83%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
+DAE WF S++ ELN+EV+ +T +Q SKTE+T+LRRTLQGLEIELQSQL+MKA LE TL
Sbjct: 567 RDAEEWFHSKSAELNKEVSTNTAMIQTSKTEITELRRTLQGLEIELQSQLSMKAGLESTL 626
Query: 1071 AKTEARF 1091
A TE R+
Sbjct: 627 ADTECRY 633
Score = 245 bits (625), Expect(3) = 3e-90
Identities = 120/168 (71%), Positives = 141/168 (83%), Gaps = 1/168 (0%)
Frame = +1
Query: 394 RALEQANGDLEVKIRDWYQKQGPG-PARDYSHYFKTIEDLRDKILGATIENSKIVLQIDN 570
R ANGDLEVKIRDWYQKQ P P RDYS YFKTIE+LRDKIL ATI+NS+++L+IDN
Sbjct: 7 RTSTTANGDLEVKIRDWYQKQSPSSPERDYSPYFKTIEELRDKILAATIDNSRVILEIDN 66
Query: 571 ARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLARTDLELQIEGLKEELAYLKKN 750
ARLAADDFR K+E E LR VEADINGLRRVLDELTLA+ DLE+QIEGL EELAYLKKN
Sbjct: 67 ARLAADDFRLKYENELTLRQGVEADINGLRRVLDELTLAKADLEMQIEGLNEELAYLKKN 126
Query: 751 HEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEVMAEQNRK 894
HEEE+ Q+ GQV+VE+D+APG+DL ++L++MR QYE MAE+NR+
Sbjct: 127 HEEEMKEFSSQLAGQVNVEMDAAPGVDLTRVLAEMREQYEAMAEKNRR 174
Score = 103 bits (256), Expect(3) = 3e-90
Identities = 49/67 (73%), Positives = 60/67 (89%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
+DAEAWF S+TEELN+EVA +TE +Q SKTE+TDLRRT+QGLEIELQSQL+MKA LE +L
Sbjct: 174 RDAEAWFFSKTEELNKEVASNTEMIQTSKTEITDLRRTMQGLEIELQSQLSMKAGLESSL 233
Query: 1071 AKTEARF 1091
A+TE R+
Sbjct: 234 AETECRY 240
Score = 25.0 bits (53), Expect(3) = 3e-90
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +2
Query: 338 RNSPCRTSTTA 370
R SPCRTSTTA
Sbjct: 2 RRSPCRTSTTA 12
>ref|XP_548106.2| PREDICTED: similar to keratin 13 isoform a isoform 1 [Canis
familiaris].
Length = 407
Score = 275 bits (702), Expect(2) = 4e-95
Identities = 135/188 (71%), Positives = 163/188 (86%), Gaps = 1/188 (0%)
Frame = +1
Query: 334 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPG-PARDYSHYFKTIEDL 510
NEK+TMQNLNDRLASYL+KVRALE+AN +LEVKIRDW+ KQ P P RDYS Y+KTIE+L
Sbjct: 95 NEKITMQNLNDRLASYLDKVRALEEANTELEVKIRDWHLKQSPSSPERDYSPYYKTIEEL 154
Query: 511 RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 690
RDKIL ATI+N++++L+IDNARLAADDFR K+E E LR SVEADINGLRRVLDELTL++
Sbjct: 155 RDKILAATIDNNRVILEIDNARLAADDFRLKYENELTLRQSVEADINGLRRVLDELTLSK 214
Query: 691 TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 870
TDLE+QIE L EELAYLKKNHEEE+ Q+ GQV+VE+D+ PGIDL ++L++MR QYE
Sbjct: 215 TDLEMQIESLNEELAYLKKNHEEEMKEFSNQMVGQVNVEMDATPGIDLTRVLAEMREQYE 274
Query: 871 VMAEQNRK 894
MAE+NR+
Sbjct: 275 AMAEKNRR 282
Score = 93.2 bits (230), Expect(2) = 4e-95
Identities = 45/67 (67%), Positives = 56/67 (83%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
+DAE WF S++ ELN+EV+ +T +Q SKTE+T+LRRTLQGLEIELQSQL+MKA LE TL
Sbjct: 282 RDAEEWFHSKSAELNKEVSTNTAMIQTSKTEITELRRTLQGLEIELQSQLSMKAGLESTL 341
Query: 1071 AKTEARF 1091
A TE R+
Sbjct: 342 ADTECRY 348
>ref|XP_850765.1| PREDICTED: similar to keratin 13 isoform a isoform 2 [Canis
familiaris].
Length = 404
Score = 275 bits (702), Expect(2) = 1e-94
Identities = 135/188 (71%), Positives = 163/188 (86%), Gaps = 1/188 (0%)
Frame = +1
Query: 334 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPG-PARDYSHYFKTIEDL 510
NEK+TMQNLNDRLASYL+KVRALE+AN +LEVKIRDW+ KQ P P RDYS Y+KTIE+L
Sbjct: 63 NEKITMQNLNDRLASYLDKVRALEEANTELEVKIRDWHLKQSPSSPERDYSPYYKTIEEL 122
Query: 511 RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 690
RDKIL ATI+N++++L+IDNARLAADDFR K+E E LR SVEADINGLRRVLDELTL++
Sbjct: 123 RDKILAATIDNNRVILEIDNARLAADDFRLKYENELTLRQSVEADINGLRRVLDELTLSK 182
Query: 691 TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 870
TDLE+QIE L EELAYLKKNHEEE+ Q+ GQV+VE+D+ PGIDL ++L++MR QYE
Sbjct: 183 TDLEMQIESLNEELAYLKKNHEEEMKEFSNQMVGQVNVEMDATPGIDLTRVLAEMREQYE 242
Query: 871 VMAEQNRK 894
MAE+NR+
Sbjct: 243 AMAEKNRR 250
Score = 91.7 bits (226), Expect(2) = 1e-94
Identities = 44/67 (65%), Positives = 55/67 (82%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
+DAE WF S+ +LN+EV+ +T +Q SKTE+T+LRRTLQGLEIELQSQL+MKA LE TL
Sbjct: 250 RDAEEWFHSKVPQLNKEVSTNTAMIQTSKTEITELRRTLQGLEIELQSQLSMKAGLESTL 309
Query: 1071 AKTEARF 1091
A TE R+
Sbjct: 310 ADTECRY 316
>ref|XP_861773.1| PREDICTED: similar to type I keratin KA17 isoform 2 [Canis
familiaris].
Length = 413
Score = 261 bits (666), Expect(2) = 9e-91
Identities = 130/186 (69%), Positives = 157/186 (84%)
Frame = +1
Query: 337 EKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLRD 516
EK TMQNLNDRLASYL+KVRALE+AN +LEVKIRDWYQKQ PGPARDYSHY++TIEDL++
Sbjct: 84 EKATMQNLNDRLASYLDKVRALEEANTELEVKIRDWYQKQAPGPARDYSHYYQTIEDLKN 143
Query: 517 KILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLARTD 696
KIL AT++N+ I+LQIDNARLAADDFRTK VLDELTL+R D
Sbjct: 144 KILTATVDNANILLQIDNARLAADDFRTK--------------------VLDELTLSRAD 183
Query: 697 LELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEVM 876
LE+QIE LKEELAYL+KNHEEE++AL+GQVGG+++VE+D+APG+DL++ILS+MR QYE M
Sbjct: 184 LEMQIENLKEELAYLRKNHEEEMNALRGQVGGEINVEMDAAPGVDLSRILSEMRDQYEKM 243
Query: 877 AEQNRK 894
AE+NRK
Sbjct: 244 AEKNRK 249
Score = 92.4 bits (228), Expect(2) = 9e-91
Identities = 45/67 (67%), Positives = 59/67 (88%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
KDAE WF S+TEELNREVA ++E +Q K+E+++LRRT+Q LEIELQSQL+MKA+LEG+L
Sbjct: 249 KDAEDWFFSKTEELNREVATNSELVQSGKSEISELRRTVQALEIELQSQLSMKASLEGSL 308
Query: 1071 AKTEARF 1091
A+TE R+
Sbjct: 309 AETENRY 315
>ref|NP_001013443.1| keratin, type I cytoskeletal 10 [Canis lupus familiaris].
Length = 568
Score = 249 bits (637), Expect(2) = 4e-85
Identities = 126/190 (66%), Positives = 158/190 (83%), Gaps = 3/190 (1%)
Frame = +1
Query: 334 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPAR---DYSHYFKTIE 504
NEK+TMQNLNDRLASYL+KVRALE++N +LE KI++WY+K G R DYS Y++TIE
Sbjct: 135 NEKVTMQNLNDRLASYLDKVRALEESNYELEGKIKEWYEKHGNSSQRAPRDYSKYYQTIE 194
Query: 505 DLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTL 684
DL+++IL T +N+ I+LQIDNARLAADDFR K+E E ALR SVEADINGLRRVLDELTL
Sbjct: 195 DLKNQILNLTTDNANILLQIDNARLAADDFRLKYENEVALRQSVEADINGLRRVLDELTL 254
Query: 685 ARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQ 864
+ DLE+QIE L EELAYLKKNHEEE+ L+ G V+VE+++APG+DL ++L++MR+Q
Sbjct: 255 TKADLEMQIESLTEELAYLKKNHEEEMRDLQNVSTGDVNVEMNAAPGVDLTELLNNMRNQ 314
Query: 865 YEVMAEQNRK 894
YE +AEQNRK
Sbjct: 315 YEQLAEQNRK 324
Score = 84.7 bits (208), Expect(2) = 4e-85
Identities = 39/67 (58%), Positives = 54/67 (80%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
KDAEAWF +++EL E+ + EQ+ K+E+T+LRRT+QGLEIELQSQL +K +LEG+L
Sbjct: 324 KDAEAWFNEKSKELTTEINSNIEQMSSHKSEITELRRTVQGLEIELQSQLALKQSLEGSL 383
Query: 1071 AKTEARF 1091
A+TE R+
Sbjct: 384 AETEGRY 390
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,773,330
Number of extensions: 978077
Number of successful extensions: 6838
Number of sequences better than 1.0e-05: 111
Number of HSP's gapped: 6577
Number of HSP's successfully gapped: 182
Length of query: 364
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 260
Effective length of database: 15,407,560
Effective search space: 4005965600
Effective search space used: 4005965600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001868
(1094 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002267.2| keratin, type I cytoskeletal 19 [Homo sapiens]. 362 e-130
Alignment gi|NP_000413.1| keratin, type I cytoskeletal 17 [Homo sapiens]. 305 e-104
Alignment gi|NP_005548.2| keratin, type I cytoskeletal 16 [Homo sapiens]. 292 e-100
Alignment gi|NP_000517.2| keratin, type I cytoskeletal 14 [Homo sapiens]. 296 e-100
Alignment gi|NP_002266.2| keratin, type I cytoskeletal 15 [Homo sapiens]. 283 2e-99
Alignment gi|NP_705694.2| keratin, type I cytoskeletal 13 isoform a [Homo... 280 2e-96
Alignment gi|NP_002265.2| keratin, type I cytoskeletal 13 isoform b [Homo... 280 2e-96
Alignment gi|NP_000214.1| keratin, type I cytoskeletal 12 [Homo sapiens]. 252 2e-85
Alignment gi|NP_000412.3| keratin, type I cytoskeletal 10 [Homo sapiens]. 254 1e-84
Alignment gi|NP_003762.1| keratin, type I cuticular Ha6 [Homo sapiens]. 237 1e-80
>ref|NP_002267.2| keratin, type I cytoskeletal 19 [Homo sapiens].
Length = 400
Score = 362 bits (928), Expect(2) = e-130
Identities = 194/259 (74%), Positives = 203/259 (78%)
Frame = +1
Query: 118 FGGLGGGSVRFSAGGAFRAPSIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 297
FGGLGGGSVRF G AFRAPSIH
Sbjct: 15 FGGLGGGSVRFGPGVAFRAPSIHGGSGGRGVSVSSARFVSSSSSGAYGGGYGGVLTASDG 74
Query: 298 XXXXXXXXXXXXNEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARD 477
NEKLTMQNLNDRLASYL+KVRALE ANG+LEVKIRDWYQKQGPGP+RD
Sbjct: 75 LLAG--------NEKLTMQNLNDRLASYLDKVRALEAANGELEVKIRDWYQKQGPGPSRD 126
Query: 478 YSHYFKTIEDLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGL 657
YSHY+ TI+DLRDKILGATIENS+IVLQIDNARLAADDFRTKFETEQALR+SVEADINGL
Sbjct: 127 YSHYYTTIQDLRDKILGATIENSRIVLQIDNARLAADDFRTKFETEQALRMSVEADINGL 186
Query: 658 RRVLDELTLARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLA 837
RRVLDELTLARTDLE+QIEGLKEELAYLKKNHEEEIS L+GQVGGQVSVEVDSAPG DLA
Sbjct: 187 RRVLDELTLARTDLEMQIEGLKEELAYLKKNHEEEISTLRGQVGGQVSVEVDSAPGTDLA 246
Query: 838 KILSDMRSQYEVMAEQNRK 894
KILSDMRSQYEVMAEQNRK
Sbjct: 247 KILSDMRSQYEVMAEQNRK 265
Score = 124 bits (310), Expect(2) = e-130
Identities = 62/68 (91%), Positives = 67/68 (98%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
KDAEAWFTSRTEELNREVAGHTEQLQ+S++EVTDLRRTLQGLEIELQSQL+MKAALE TL
Sbjct: 265 KDAEAWFTSRTEELNREVAGHTEQLQMSRSEVTDLRRTLQGLEIELQSQLSMKAALEDTL 324
Query: 1071 AKTEARFG 1094
A+TEARFG
Sbjct: 325 AETEARFG 332
>ref|NP_000413.1| keratin, type I cytoskeletal 17 [Homo sapiens].
Length = 432
Score = 305 bits (781), Expect(2) = e-104
Identities = 148/186 (79%), Positives = 176/186 (94%)
Frame = +1
Query: 337 EKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLRD 516
EK TMQNLNDRLASYL+KVRALE+AN +LEVKIRDWYQ+Q PGPARDYS Y++TIE+L++
Sbjct: 84 EKATMQNLNDRLASYLDKVRALEEANTELEVKIRDWYQRQAPGPARDYSQYYRTIEELQN 143
Query: 517 KILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLARTD 696
KIL AT++N+ I+LQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR D
Sbjct: 144 KILTATVDNANILLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLARAD 203
Query: 697 LELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEVM 876
LE+QIE LKEELAYLKKNHEEE++AL+GQVGG+++VE+D+APG+DL++IL++MR QYE M
Sbjct: 204 LEMQIENLKEELAYLKKNHEEEMNALRGQVGGEINVEMDAAPGVDLSRILNEMRDQYEKM 263
Query: 877 AEQNRK 894
AE+NRK
Sbjct: 264 AEKNRK 269
Score = 92.4 bits (228), Expect(2) = e-104
Identities = 45/67 (67%), Positives = 58/67 (86%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
KDAE WF S+TEELNREVA ++E +Q K+E+++LRRT+Q LEIELQSQL+MKA+LEG L
Sbjct: 269 KDAEDWFFSKTEELNREVATNSELVQSGKSEISELRRTMQALEIELQSQLSMKASLEGNL 328
Query: 1071 AKTEARF 1091
A+TE R+
Sbjct: 329 AETENRY 335
>ref|NP_005548.2| keratin, type I cytoskeletal 16 [Homo sapiens].
Length = 473
Score = 292 bits (748), Expect(2) = e-100
Identities = 143/187 (76%), Positives = 171/187 (91%)
Frame = +1
Query: 334 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLR 513
+EK+TMQNLNDRLASYL+KVRALE+AN DLEVKIRDWYQ+Q P +DYS YFKTIEDLR
Sbjct: 116 SEKVTMQNLNDRLASYLDKVRALEEANADLEVKIRDWYQRQRPSEIKDYSPYFKTIEDLR 175
Query: 514 DKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLART 693
+KI+ ATIEN++ +LQIDNARLAADDFRTK+E E ALR +VEAD+NGLRRVLDELTLART
Sbjct: 176 NKIIAATIENAQPILQIDNARLAADDFRTKYEHELALRQTVEADVNGLRRVLDELTLART 235
Query: 694 DLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEV 873
DLE+QIEGLKEELAYL+KNHEEE+ AL+GQ GG V+VE+D+APG+DL++IL++MR QYE
Sbjct: 236 DLEMQIEGLKEELAYLRKNHEEEMLALRGQTGGDVNVEMDAAPGVDLSRILNEMRDQYEQ 295
Query: 874 MAEQNRK 894
MAE+NR+
Sbjct: 296 MAEKNRR 302
Score = 90.9 bits (224), Expect(2) = e-100
Identities = 43/67 (64%), Positives = 58/67 (86%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
+DAE WF S+TEELN+EVA ++E +Q S++EVT+LRR LQGLEIELQSQL+MKA+LE +L
Sbjct: 302 RDAETWFLSKTEELNKEVASNSELVQSSRSEVTELRRVLQGLEIELQSQLSMKASLENSL 361
Query: 1071 AKTEARF 1091
+T+ R+
Sbjct: 362 EETKGRY 368
>ref|NP_000517.2| keratin, type I cytoskeletal 14 [Homo sapiens].
Length = 472
Score = 296 bits (758), Expect(2) = e-100
Identities = 145/187 (77%), Positives = 172/187 (91%)
Frame = +1
Query: 334 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLR 513
+EK+TMQNLNDRLASYL+KVRALE+AN DLEVKIRDWYQ+Q P +DYS YFKTIEDLR
Sbjct: 114 SEKVTMQNLNDRLASYLDKVRALEEANADLEVKIRDWYQRQRPAEIKDYSPYFKTIEDLR 173
Query: 514 DKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLART 693
+KIL AT++N+ ++LQIDNARLAADDFRTK+ETE LR+SVEADINGLRRVLDELTLAR
Sbjct: 174 NKILTATVDNANVLLQIDNARLAADDFRTKYETELNLRMSVEADINGLRRVLDELTLARA 233
Query: 694 DLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEV 873
DLE+QIE LKEELAYLKKNHEEE++AL+GQVGG V+VE+D+APG+DL++IL++MR QYE
Sbjct: 234 DLEMQIESLKEELAYLKKNHEEEMNALRGQVGGDVNVEMDAAPGVDLSRILNEMRDQYEK 293
Query: 874 MAEQNRK 894
MAE+NRK
Sbjct: 294 MAEKNRK 300
Score = 87.0 bits (214), Expect(2) = e-100
Identities = 41/67 (61%), Positives = 57/67 (85%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
KDAE WF ++TEELNREVA ++E +Q K+E+++LRRT+Q LEIELQSQL+MKA+LE +L
Sbjct: 300 KDAEEWFFTKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSL 359
Query: 1071 AKTEARF 1091
+T+ R+
Sbjct: 360 EETKGRY 366
>ref|NP_002266.2| keratin, type I cytoskeletal 15 [Homo sapiens].
Length = 456
Score = 283 bits (725), Expect(2) = 2e-99
Identities = 139/188 (73%), Positives = 163/188 (86%), Gaps = 1/188 (0%)
Frame = +1
Query: 334 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGP-GPARDYSHYFKTIEDL 510
NEK+TMQNLNDRLASYL+KVRALE+AN DLEVKI DWYQKQ P P DYS YFKTIE+L
Sbjct: 104 NEKITMQNLNDRLASYLDKVRALEEANADLEVKIHDWYQKQTPTSPECDYSQYFKTIEEL 163
Query: 511 RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 690
RDKI+ TI+NS+++L+IDNARLAADDFR K+E E ALR VEADINGLRRVLDELTLAR
Sbjct: 164 RDKIMATTIDNSRVILEIDNARLAADDFRLKYENELALRQGVEADINGLRRVLDELTLAR 223
Query: 691 TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 870
TDLE+QIEGL EELAYLKKNHEEE+ Q+ GQV+VE+D+APG+DL ++L++MR QYE
Sbjct: 224 TDLEMQIEGLNEELAYLKKNHEEEMKEFSSQLAGQVNVEMDAAPGVDLTRVLAEMREQYE 283
Query: 871 VMAEQNRK 894
MAE+NR+
Sbjct: 284 AMAEKNRR 291
Score = 98.6 bits (244), Expect(2) = 2e-99
Identities = 47/67 (70%), Positives = 58/67 (86%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
+D EAWF S+TEELN+EVA +TE +Q SKTE+TDLRRT+Q LEIELQSQL+MKA LE +L
Sbjct: 291 RDVEAWFFSKTEELNKEVASNTEMIQTSKTEITDLRRTMQELEIELQSQLSMKAGLENSL 350
Query: 1071 AKTEARF 1091
A+TE R+
Sbjct: 351 AETECRY 357
>ref|NP_705694.2| keratin, type I cytoskeletal 13 isoform a [Homo sapiens].
Length = 458
Score = 280 bits (717), Expect(2) = 2e-96
Identities = 139/188 (73%), Positives = 164/188 (87%), Gaps = 1/188 (0%)
Frame = +1
Query: 334 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPG-PARDYSHYFKTIEDL 510
NEK+TMQNLNDRLASYLEKVRALE+AN DLEVKIRDW+ KQ P P RDYS Y+KTIE+L
Sbjct: 103 NEKITMQNLNDRLASYLEKVRALEEANADLEVKIRDWHLKQSPASPERDYSPYYKTIEEL 162
Query: 511 RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 690
RDKIL ATIEN++++L+IDNARLAADDFR K+E E ALR SVEADINGLRRVLDELTL++
Sbjct: 163 RDKILTATIENNRVILEIDNARLAADDFRLKYENELALRQSVEADINGLRRVLDELTLSK 222
Query: 691 TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 870
TDLE+QIE L EELAY+KKNHEEE+ QV GQV+VE+D+ PGIDL ++L++MR QYE
Sbjct: 223 TDLEMQIESLNEELAYMKKNHEEEMKEFSNQVVGQVNVEMDATPGIDLTRVLAEMREQYE 282
Query: 871 VMAEQNRK 894
MAE+NR+
Sbjct: 283 AMAERNRR 290
Score = 91.7 bits (226), Expect(2) = 2e-96
Identities = 43/67 (64%), Positives = 57/67 (85%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
+DAE WF +++ ELN+EV+ +T +Q SKTE+T+LRRTLQGLEIELQSQL+MKA LE T+
Sbjct: 290 RDAEEWFHAKSAELNKEVSTNTAMIQTSKTEITELRRTLQGLEIELQSQLSMKAGLENTV 349
Query: 1071 AKTEARF 1091
A+TE R+
Sbjct: 350 AETECRY 356
>ref|NP_002265.2| keratin, type I cytoskeletal 13 isoform b [Homo sapiens].
Length = 420
Score = 280 bits (717), Expect(2) = 2e-96
Identities = 139/188 (73%), Positives = 164/188 (87%), Gaps = 1/188 (0%)
Frame = +1
Query: 334 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPG-PARDYSHYFKTIEDL 510
NEK+TMQNLNDRLASYLEKVRALE+AN DLEVKIRDW+ KQ P P RDYS Y+KTIE+L
Sbjct: 103 NEKITMQNLNDRLASYLEKVRALEEANADLEVKIRDWHLKQSPASPERDYSPYYKTIEEL 162
Query: 511 RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 690
RDKIL ATIEN++++L+IDNARLAADDFR K+E E ALR SVEADINGLRRVLDELTL++
Sbjct: 163 RDKILTATIENNRVILEIDNARLAADDFRLKYENELALRQSVEADINGLRRVLDELTLSK 222
Query: 691 TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 870
TDLE+QIE L EELAY+KKNHEEE+ QV GQV+VE+D+ PGIDL ++L++MR QYE
Sbjct: 223 TDLEMQIESLNEELAYMKKNHEEEMKEFSNQVVGQVNVEMDATPGIDLTRVLAEMREQYE 282
Query: 871 VMAEQNRK 894
MAE+NR+
Sbjct: 283 AMAERNRR 290
Score = 91.7 bits (226), Expect(2) = 2e-96
Identities = 43/67 (64%), Positives = 57/67 (85%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
+DAE WF +++ ELN+EV+ +T +Q SKTE+T+LRRTLQGLEIELQSQL+MKA LE T+
Sbjct: 290 RDAEEWFHAKSAELNKEVSTNTAMIQTSKTEITELRRTLQGLEIELQSQLSMKAGLENTV 349
Query: 1071 AKTEARF 1091
A+TE R+
Sbjct: 350 AETECRY 356
>ref|NP_000214.1| keratin, type I cytoskeletal 12 [Homo sapiens].
Length = 494
Score = 252 bits (644), Expect(2) = 2e-85
Identities = 127/191 (66%), Positives = 159/191 (83%), Gaps = 4/191 (2%)
Frame = +1
Query: 334 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPA----RDYSHYFKTI 501
+EK TMQNLNDRLASYL+KVRALE+AN +LE KIR+WY+ +G G A DYS Y+ I
Sbjct: 124 SEKETMQNLNDRLASYLDKVRALEEANTELENKIREWYETRGTGTADASQSDYSKYYPLI 183
Query: 502 EDLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELT 681
EDLR+KI+ A+I N++++LQIDNARLAA+DFR K+E E ALR VEADINGLRRVLDELT
Sbjct: 184 EDLRNKIISASIGNAQLLLQIDNARLAAEDFRMKYENELALRQGVEADINGLRRVLDELT 243
Query: 682 LARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRS 861
L RTDLE+QIE L EELAY+KKNHE+E+ + + G+VSVE+D+APG+DL ++L+DMR+
Sbjct: 244 LTRTDLEMQIESLNEELAYMKKNHEDELQSFRVGGPGEVSVEMDAAPGVDLTRLLNDMRA 303
Query: 862 QYEVMAEQNRK 894
QYE +AEQNRK
Sbjct: 304 QYETIAEQNRK 314
Score = 82.8 bits (203), Expect(2) = 2e-85
Identities = 41/67 (61%), Positives = 52/67 (77%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
KDAEAWF ++ EL +E++ +TEQLQ SK+EVTDLRR Q LEIELQSQL MK +LE +L
Sbjct: 314 KDAEAWFIEKSGELRKEISTNTEQLQSSKSEVTDLRRAFQNLEIELQSQLAMKKSLEDSL 373
Query: 1071 AKTEARF 1091
A+ E +
Sbjct: 374 AEAEGDY 380
>ref|NP_000412.3| keratin, type I cytoskeletal 10 [Homo sapiens].
Length = 584
Score = 254 bits (650), Expect(2) = 1e-84
Identities = 128/190 (67%), Positives = 159/190 (83%), Gaps = 3/190 (1%)
Frame = +1
Query: 334 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQG---PGPARDYSHYFKTIE 504
NEK+TMQNLNDRLASYL+KVRALE++N +LE KI++WY+K G G RDYS Y+KTI+
Sbjct: 145 NEKVTMQNLNDRLASYLDKVRALEESNYELEGKIKEWYEKHGNSHQGEPRDYSKYYKTID 204
Query: 505 DLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTL 684
DL+++IL T +N+ I+LQIDNARLAADDFR K+E E ALR SVEADINGLRRVLDELTL
Sbjct: 205 DLKNQILNLTTDNANILLQIDNARLAADDFRLKYENEVALRQSVEADINGLRRVLDELTL 264
Query: 685 ARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQ 864
+ DLE+QIE L EELAYLKKNHEEE+ L+ G V+VE+++APG+DL ++L++MRSQ
Sbjct: 265 TKADLEMQIESLTEELAYLKKNHEEEMKDLRNVSTGDVNVEMNAAPGVDLTQLLNNMRSQ 324
Query: 865 YEVMAEQNRK 894
YE +AEQNRK
Sbjct: 325 YEQLAEQNRK 334
Score = 77.8 bits (190), Expect(2) = 1e-84
Identities = 36/67 (53%), Positives = 51/67 (76%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
KDAEAWF +++EL E+ + EQ+ K+E+T+LRR +Q LEIELQSQL +K +LE +L
Sbjct: 334 KDAEAWFNEKSKELTTEIDNNIEQISSYKSEITELRRNVQALEIELQSQLALKQSLEASL 393
Query: 1071 AKTEARF 1091
A+TE R+
Sbjct: 394 AETEGRY 400
>ref|NP_003762.1| keratin, type I cuticular Ha6 [Homo sapiens].
Length = 467
Score = 237 bits (605), Expect(2) = 1e-80
Identities = 120/187 (64%), Positives = 148/187 (79%)
Frame = +1
Query: 334 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLR 513
+EK TMQ LNDRLA+YLEKVR LE+ N +LE +I++WY+ Q P DY YFKTIED +
Sbjct: 92 SEKETMQFLNDRLANYLEKVRQLERENAELESRIQEWYEFQIPYICPDYQSYFKTIEDFQ 151
Query: 514 DKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLART 693
KIL EN+++VLQIDNA+LAADDFRTK+ETE +LR VEADINGLRR+LDELTL +
Sbjct: 152 QKILLTKSENARLVLQIDNAKLAADDFRTKYETELSLRQLVEADINGLRRILDELTLCKA 211
Query: 694 DLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEV 873
DLE Q+E LKEEL LKKNHEEE+S L+ Q+G +++VEVD+AP +DL KIL DMR QYE
Sbjct: 212 DLEAQVESLKEELMCLKKNHEEEVSVLRCQLGDRLNVEVDAAPPVDLNKILEDMRCQYEA 271
Query: 874 MAEQNRK 894
+ E NR+
Sbjct: 272 LVENNRR 278
Score = 82.4 bits (202), Expect(2) = 1e-80
Identities = 38/67 (56%), Positives = 54/67 (80%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
+D EAWF ++TEELN++V +EQLQ +TE+ +LRRT+ LEIELQ+Q +M+ +LE TL
Sbjct: 278 RDVEAWFNTQTEELNQQVVSSSEQLQCCQTEIIELRRTVNALEIELQAQHSMRNSLESTL 337
Query: 1071 AKTEARF 1091
A+TEAR+
Sbjct: 338 AETEARY 344
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,645,640
Number of extensions: 925747
Number of successful extensions: 6133
Number of sequences better than 1.0e-05: 74
Number of HSP's gapped: 5954
Number of HSP's successfully gapped: 122
Length of query: 364
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 260
Effective length of database: 14,868,908
Effective search space: 3865916080
Effective search space used: 3865916080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001868
(1094 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032497.1| keratin, type I cytoskeletal 19 [Mus musculus]. 356 e-124
Alignment gi|NP_997648.2| keratin, type I cytoskeletal 42 [Mus musculus]. 303 e-105
Alignment gi|NP_034793.1| keratin, type I cytoskeletal 17 [Mus musculus]. 306 e-104
Alignment gi|NP_032495.2| keratin, type I cytoskeletal 15 [Mus musculus]. 284 e-100
Alignment gi|NP_058654.1| keratin, type I cytoskeletal 14 [Mus musculus]. 294 2e-99
Alignment gi|NP_034792.1| keratin, type I cytoskeletal 13 [Mus musculus]. 271 2e-94
Alignment gi|NP_032496.1| keratin, type I cytoskeletal 16 [Mus musculus]. 274 3e-92
Alignment gi|NP_034791.2| keratin, type I cytoskeletal 12 [Mus musculus]. 242 5e-84
Alignment gi|NP_034790.2| keratin, type I cytoskeletal 10 [Mus musculus]. 246 5e-83
Alignment gi|NP_001167570.1| keratin, type I cuticular Ha6 [Mus musculus]. 240 1e-81
>ref|NP_032497.1| keratin, type I cytoskeletal 19 [Mus musculus].
Length = 403
Score = 356 bits (914), Expect(2) = e-124
Identities = 188/259 (72%), Positives = 202/259 (77%)
Frame = +1
Query: 118 FGGLGGGSVRFSAGGAFRAPSIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 297
FGG GGGSVR +GG FRAPSIH
Sbjct: 15 FGGTGGGSVRIGSGGVFRAPSIHGGSGGRGVSVSSTRFVTSSSGSYGGVRGGSFSGTLAV 74
Query: 298 XXXXXXXXXXXXNEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARD 477
NEK+TMQNLNDRLASYL+KVRALEQANG+LEVKIRDWYQKQGPGP+RD
Sbjct: 75 SDGLLSG-----NEKITMQNLNDRLASYLDKVRALEQANGELEVKIRDWYQKQGPGPSRD 129
Query: 478 YSHYFKTIEDLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGL 657
Y+HYFKTIEDLRDKILGATI+NSKIVLQIDNARLAADDFRTKFETE ALRLSVEADINGL
Sbjct: 130 YNHYFKTIEDLRDKILGATIDNSKIVLQIDNARLAADDFRTKFETEHALRLSVEADINGL 189
Query: 658 RRVLDELTLARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLA 837
RRVLDELTLARTDLE+QIE LKEELAYLKKNHEEEI+AL+ QVGGQVSVEVDS PG+DLA
Sbjct: 190 RRVLDELTLARTDLEMQIESLKEELAYLKKNHEEEITALRSQVGGQVSVEVDSTPGVDLA 249
Query: 838 KILSDMRSQYEVMAEQNRK 894
KILS+MRSQYE+MAE+NRK
Sbjct: 250 KILSEMRSQYEIMAEKNRK 268
Score = 108 bits (269), Expect(2) = e-124
Identities = 55/68 (80%), Positives = 63/68 (92%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
KDAEA + +R EELN +VA H+EQ+QISKTEVTDLRRTLQGLEIELQSQL+MKAALEGTL
Sbjct: 268 KDAEATYLARIEELNTQVAVHSEQIQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTL 327
Query: 1071 AKTEARFG 1094
A+TEAR+G
Sbjct: 328 AETEARYG 335
>ref|NP_997648.2| keratin, type I cytoskeletal 42 [Mus musculus].
Length = 452
Score = 303 bits (777), Expect(2) = e-105
Identities = 149/187 (79%), Positives = 175/187 (93%)
Frame = +1
Query: 334 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLR 513
+EK TMQNLNDRLA+YL++VRALE+AN DLEVKIR+WY+KQGPGPARDYS YFKTIEDLR
Sbjct: 93 SEKETMQNLNDRLATYLDRVRALEEANADLEVKIREWYKKQGPGPARDYSPYFKTIEDLR 152
Query: 514 DKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLART 693
+KIL ATI+N+ IVLQIDNARLAADDFRTK+ETE LR+SVEADINGLRRVLDELTLAR
Sbjct: 153 NKILAATIDNASIVLQIDNARLAADDFRTKYETELNLRMSVEADINGLRRVLDELTLARA 212
Query: 694 DLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEV 873
DLE+QIE LKEELAYL+KNHEEE++AL+GQVGG V+VE+D+APG+DL++IL++MR QYE
Sbjct: 213 DLEMQIESLKEELAYLRKNHEEEMNALRGQVGGDVNVEMDAAPGVDLSRILNEMRDQYEK 272
Query: 874 MAEQNRK 894
MAE+NRK
Sbjct: 273 MAEKNRK 279
Score = 99.0 bits (245), Expect(2) = e-105
Identities = 48/68 (70%), Positives = 61/68 (89%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
KDAE WF ++TEELNREVA +TE LQ S+TE+T+LRR++Q LEIELQSQL+MKA+LE +L
Sbjct: 279 KDAEEWFFTKTEELNREVATNTEALQSSRTEITELRRSVQNLEIELQSQLSMKASLENSL 338
Query: 1071 AKTEARFG 1094
A+TEAR+G
Sbjct: 339 AETEARYG 346
>ref|NP_034793.1| keratin, type I cytoskeletal 17 [Mus musculus].
Length = 433
Score = 306 bits (784), Expect(2) = e-104
Identities = 150/186 (80%), Positives = 175/186 (94%)
Frame = +1
Query: 337 EKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLRD 516
EK TMQNLNDRLASYL+KVRALE+AN +LEVKIRDWYQKQ PGPARDYS Y+ TIEDL++
Sbjct: 84 EKATMQNLNDRLASYLDKVRALEEANTELEVKIRDWYQKQAPGPARDYSAYYHTIEDLKN 143
Query: 517 KILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLARTD 696
KIL AT++N+ I+LQIDNARLAADDFRTKFETEQALR+SVEADINGLRRVLDELTLAR D
Sbjct: 144 KILVATVDNASILLQIDNARLAADDFRTKFETEQALRMSVEADINGLRRVLDELTLARAD 203
Query: 697 LELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEVM 876
LE+QIE LKEELAYLKKNHEEE++AL+GQVGG+++VE+D+APG+DL++ILS+MR QYE M
Sbjct: 204 LEMQIENLKEELAYLKKNHEEEMNALRGQVGGEINVEMDAAPGVDLSRILSEMRDQYEKM 263
Query: 877 AEQNRK 894
AE+NRK
Sbjct: 264 AEKNRK 269
Score = 92.8 bits (229), Expect(2) = e-104
Identities = 45/67 (67%), Positives = 59/67 (88%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
KDAE WF S+TEELNREVA ++E +Q K+E+++LRRT+Q LEIELQSQL+MKA+LEG+L
Sbjct: 269 KDAEDWFFSKTEELNREVATNSELVQSGKSEISELRRTMQALEIELQSQLSMKASLEGSL 328
Query: 1071 AKTEARF 1091
A+TE R+
Sbjct: 329 AETENRY 335
>ref|NP_032495.2| keratin, type I cytoskeletal 15 [Mus musculus].
Length = 456
Score = 284 bits (727), Expect(2) = e-100
Identities = 140/188 (74%), Positives = 165/188 (87%), Gaps = 1/188 (0%)
Frame = +1
Query: 334 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPG-PARDYSHYFKTIEDL 510
NEK+TMQNLNDRLASYL+KVRALEQAN +LEVKIRDWYQKQ P P RDYSHYFKT+E++
Sbjct: 97 NEKVTMQNLNDRLASYLDKVRALEQANTELEVKIRDWYQKQSPASPDRDYSHYFKTMEEI 156
Query: 511 RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 690
RDKIL ATI+NS++VL+IDNARLAADDFR K+E E LR VEADINGLRRVLDELTLAR
Sbjct: 157 RDKILAATIDNSRVVLEIDNARLAADDFRLKYENELTLRQGVEADINGLRRVLDELTLAR 216
Query: 691 TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 870
TDLE+QIE L EELAYLKKNHEEE+ Q+ GQV+VE+D+APG+DL ++L++MR QYE
Sbjct: 217 TDLEMQIEQLNEELAYLKKNHEEEMKEFSSQLAGQVNVEMDAAPGVDLTRMLAEMREQYE 276
Query: 871 VMAEQNRK 894
+AE+NR+
Sbjct: 277 AIAEKNRR 284
Score = 100 bits (249), Expect(2) = e-100
Identities = 48/67 (71%), Positives = 58/67 (86%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
+D EAWF S+TEELN+EVA +TE +Q SKTE+TDLRRTLQGLEIELQSQL+MKA LE +L
Sbjct: 284 RDVEAWFFSKTEELNKEVASNTEMIQTSKTEITDLRRTLQGLEIELQSQLSMKAGLENSL 343
Query: 1071 AKTEARF 1091
A+ E R+
Sbjct: 344 AEVECRY 350
>ref|NP_058654.1| keratin, type I cytoskeletal 14 [Mus musculus].
Length = 484
Score = 294 bits (753), Expect(2) = 2e-99
Identities = 142/187 (75%), Positives = 173/187 (92%)
Frame = +1
Query: 334 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLR 513
+EK+TMQNLNDRLA+YL+KVRALE+AN +LEVKIRDWYQ+Q P +DYS YFKTIEDL+
Sbjct: 120 SEKVTMQNLNDRLATYLDKVRALEEANTELEVKIRDWYQRQRPTEIKDYSPYFKTIEDLK 179
Query: 514 DKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLART 693
KIL AT++N+ ++LQIDNARLAADDFRTKFETEQ+LR+SVEADINGLRRVLDELTLAR
Sbjct: 180 SKILAATVDNANVLLQIDNARLAADDFRTKFETEQSLRMSVEADINGLRRVLDELTLARA 239
Query: 694 DLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEV 873
DLE+QIE LKEELAYLKKNHEEE+++++GQVGG V+VE+D+APG+DL++IL++MR QYE
Sbjct: 240 DLEMQIESLKEELAYLKKNHEEEMASMRGQVGGDVNVEMDAAPGVDLSRILNEMRDQYEK 299
Query: 874 MAEQNRK 894
MAE+NRK
Sbjct: 300 MAEKNRK 306
Score = 87.8 bits (216), Expect(2) = 2e-99
Identities = 42/67 (62%), Positives = 56/67 (83%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
KDAE WF S+TEELNREVA ++E +Q K+E+++LRRT+Q LEIELQSQL+MKA+LE L
Sbjct: 306 KDAEEWFFSKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENNL 365
Query: 1071 AKTEARF 1091
+T+ R+
Sbjct: 366 EETKGRY 372
>ref|NP_034792.1| keratin, type I cytoskeletal 13 [Mus musculus].
Length = 437
Score = 271 bits (693), Expect(2) = 2e-94
Identities = 136/188 (72%), Positives = 160/188 (85%), Gaps = 1/188 (0%)
Frame = +1
Query: 334 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPG-PARDYSHYFKTIEDL 510
NEK+TMQNLNDRLASYL+KVRALE AN DLEVKIRDW+ KQ P P RDYS Y+KTIE+L
Sbjct: 95 NEKITMQNLNDRLASYLDKVRALEAANADLEVKIRDWHLKQSPASPERDYSAYYKTIEEL 154
Query: 511 RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 690
R KIL AT +N++I+L+IDNARLAADDFR K+E E LR SVEADINGLRRVLDELTLA+
Sbjct: 155 RIKILEATTDNNRIILEIDNARLAADDFRLKYENELTLRQSVEADINGLRRVLDELTLAK 214
Query: 691 TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 870
TDLE+QIE L EELAYLKKNHEEE+ QV GQV+VE+D+ PGIDL ++L++MR QYE
Sbjct: 215 TDLEMQIESLNEELAYLKKNHEEEMKEFSNQVVGQVNVEMDATPGIDLTRVLAEMREQYE 274
Query: 871 VMAEQNRK 894
+AE+NR+
Sbjct: 275 ALAEKNRR 282
Score = 94.4 bits (233), Expect(2) = 2e-94
Identities = 44/67 (65%), Positives = 57/67 (85%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
+DAE WF +++ ELN+EV+ + E +Q SKTE+T+LRRTLQGLEIELQSQL+MKA LE TL
Sbjct: 282 RDAEEWFQTKSAELNKEVSSNAEMIQTSKTEITELRRTLQGLEIELQSQLSMKAGLESTL 341
Query: 1071 AKTEARF 1091
A+TE R+
Sbjct: 342 AETECRY 348
>ref|NP_032496.1| keratin, type I cytoskeletal 16 [Mus musculus].
Length = 469
Score = 274 bits (701), Expect(2) = 3e-92
Identities = 135/187 (72%), Positives = 164/187 (87%)
Frame = +1
Query: 334 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLR 513
+EK+TMQNLNDRLA+YL+KVRALE+AN DLEVKIRDWYQ+Q P +DYS YFKTIEDL+
Sbjct: 112 SEKVTMQNLNDRLATYLDKVRALEEANRDLEVKIRDWYQRQRPTEIKDYSPYFKTIEDLK 171
Query: 514 DKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLART 693
KI+ AT EN++ LQIDNARLAADDFRTK+E E LR SVE DINGLR+VLDELTL+R
Sbjct: 172 SKIIIATQENAQFTLQIDNARLAADDFRTKYENELFLRQSVEGDINGLRKVLDELTLSRA 231
Query: 694 DLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEV 873
DLE+QIE L+EELA+LKKNHEEE+ AL+GQ GG V+VE+D+APG+DL++IL++MR QYE
Sbjct: 232 DLEMQIENLREELAFLKKNHEEEMLALRGQTGGDVNVEMDAAPGVDLSRILNEMRDQYEQ 291
Query: 874 MAEQNRK 894
MAE+NR+
Sbjct: 292 MAEKNRR 298
Score = 83.6 bits (205), Expect(2) = 3e-92
Identities = 38/67 (56%), Positives = 55/67 (82%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
+D EAWF +TEELN+EVA +++ +Q +++EV +LRR QGLEIELQSQL+MKA+LE +L
Sbjct: 298 RDVEAWFLRKTEELNKEVASNSDLIQSNRSEVAELRRVFQGLEIELQSQLSMKASLENSL 357
Query: 1071 AKTEARF 1091
+T+ R+
Sbjct: 358 EETKGRY 364
>ref|NP_034791.2| keratin, type I cytoskeletal 12 [Mus musculus].
Length = 487
Score = 242 bits (617), Expect(2) = 5e-84
Identities = 121/190 (63%), Positives = 154/190 (81%), Gaps = 3/190 (1%)
Frame = +1
Query: 334 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQ---GPGPARDYSHYFKTIE 504
+EK TMQNLNDRLASYL KVR+LE+AN +LE KIR+WY+ + G DYS Y+ IE
Sbjct: 118 SEKETMQNLNDRLASYLGKVRSLEEANAELENKIREWYETRRTRDAGSQSDYSKYYPLIE 177
Query: 505 DLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTL 684
DL++KI+ A + N++++LQIDNARLAA+DFR K+E E ALR +VEADINGLRRVLDELTL
Sbjct: 178 DLKNKIVSARVSNAQLLLQIDNARLAAEDFRMKYENELALRQTVEADINGLRRVLDELTL 237
Query: 685 ARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQ 864
R DLE Q+E L EELAY+KKNHEEE+ + + G+V+VE+D+APG+DL K+L++MR+Q
Sbjct: 238 TRADLEAQLETLTEELAYMKKNHEEELQSFQAGGPGEVNVEMDAAPGVDLTKVLNEMRAQ 297
Query: 865 YEVMAEQNRK 894
YE MAEQNRK
Sbjct: 298 YEAMAEQNRK 307
Score = 88.6 bits (218), Expect(2) = 5e-84
Identities = 42/67 (62%), Positives = 56/67 (83%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
KDAEAWF ++ EL +E++ +TEQLQ SK+EVTDL+R +Q LEIELQSQL MK++LEG+L
Sbjct: 307 KDAEAWFLEKSRELRKEISSNTEQLQSSKSEVTDLKRMVQNLEIELQSQLAMKSSLEGSL 366
Query: 1071 AKTEARF 1091
A+TE +
Sbjct: 367 AETEGGY 373
>ref|NP_034790.2| keratin, type I cytoskeletal 10 [Mus musculus].
Length = 561
Score = 246 bits (629), Expect(2) = 5e-83
Identities = 123/190 (64%), Positives = 158/190 (83%), Gaps = 3/190 (1%)
Frame = +1
Query: 334 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPAR---DYSHYFKTIE 504
NEK+TMQNLNDRLASY++KVRALE++N +LE KI++WY+K G R DYS Y+KTIE
Sbjct: 134 NEKVTMQNLNDRLASYMDKVRALEESNYELEGKIKEWYEKHGNSSQREPRDYSKYYKTIE 193
Query: 505 DLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTL 684
DL+ +IL T +N+ ++LQIDNARLAADDFR K+E E LR SVEADINGLRRVLDELTL
Sbjct: 194 DLKGQILTLTTDNANVLLQIDNARLAADDFRLKYENEVTLRQSVEADINGLRRVLDELTL 253
Query: 685 ARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQ 864
+++DLE+QIE L EELAYLKKNHEEE+ L+ G V+VE+++APG+DL ++L++MR+Q
Sbjct: 254 SKSDLEMQIESLNEELAYLKKNHEEEMRDLQNVSTGDVNVEMNAAPGVDLTQLLNNMRNQ 313
Query: 865 YEVMAEQNRK 894
YE +AE+NRK
Sbjct: 314 YEQLAEKNRK 323
Score = 80.5 bits (197), Expect(2) = 5e-83
Identities = 37/67 (55%), Positives = 52/67 (77%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
KDAE WF +++EL E+ + EQ+ K+E+T+LRRT+QGLEIELQSQL +K +LE +L
Sbjct: 323 KDAEEWFNQKSKELTTEIDSNIEQMSSHKSEITELRRTVQGLEIELQSQLALKQSLEASL 382
Query: 1071 AKTEARF 1091
A+TE R+
Sbjct: 383 AETEGRY 389
>ref|NP_001167570.1| keratin, type I cuticular Ha6 [Mus musculus].
Length = 473
Score = 240 bits (612), Expect(2) = 1e-81
Identities = 120/187 (64%), Positives = 148/187 (79%)
Frame = +1
Query: 334 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLR 513
NEK TMQ LNDRLA+YLEKVR LEQ N LE +IR+WY+ Q P DY YFKT E+L+
Sbjct: 92 NEKATMQILNDRLANYLEKVRQLEQENTQLECRIREWYECQIPYICPDYQSYFKTAEELQ 151
Query: 514 DKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLART 693
KIL EN++++LQIDNA+LAADDFRTK+ETE +LR VEADINGLRR+LDELTL +
Sbjct: 152 QKILLTKSENARLILQIDNAKLAADDFRTKYETELSLRQLVEADINGLRRILDELTLCKA 211
Query: 694 DLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEV 873
DLE Q+E LKEEL LK+NHEEE++AL+ Q+G +++VEVD+AP +DL KIL DMR QYE
Sbjct: 212 DLEAQVESLKEELLCLKRNHEEEVNALRSQLGDRLNVEVDAAPPVDLNKILDDMRCQYET 271
Query: 874 MAEQNRK 894
+ E NR+
Sbjct: 272 LVENNRR 278
Score = 82.8 bits (203), Expect(2) = 1e-81
Identities = 38/67 (56%), Positives = 54/67 (80%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
+D EAWF ++TEELN++V +EQLQ +TE+ +LRRT+ LEIELQ+Q +M+ +LE TL
Sbjct: 278 RDVEAWFNTQTEELNQQVVSSSEQLQCCQTEIIELRRTVNSLEIELQAQQSMRNSLESTL 337
Query: 1071 AKTEARF 1091
A+TEAR+
Sbjct: 338 AETEARY 344
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,928,109
Number of extensions: 756173
Number of successful extensions: 4581
Number of sequences better than 1.0e-05: 78
Number of HSP's gapped: 4399
Number of HSP's successfully gapped: 132
Length of query: 364
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 261
Effective length of database: 12,523,851
Effective search space: 3268725111
Effective search space used: 3268725111
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001868
(1094 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131485.1| PREDICTED: keratin, type I cytoskeletal 19-l... 387 e-140
Alignment gi|XP_003131486.1| PREDICTED: keratin, type I cytoskeletal 15-l... 275 2e-98
Alignment gi|XP_003131484.1| PREDICTED: keratin, type I cytoskeletal 13-l... 279 5e-95
Alignment gi|XP_003131509.1| PREDICTED: keratin, type I cytoskeletal 12 [... 249 1e-85
Alignment gi|XP_003131508.1| PREDICTED: keratin, type I cytoskeletal 10-l... 249 6e-84
Alignment gi|XP_003131480.2| PREDICTED: keratin, type I cuticular Ha6 iso... 237 2e-80
Alignment gi|XP_003131482.2| PREDICTED: keratin, type I cuticular Ha5-lik... 228 2e-76
Alignment gi|XP_003131477.1| PREDICTED: keratin, type I microfibrillar 48... 224 2e-75
Alignment gi|XP_003131481.1| PREDICTED: keratin, type I cuticular Ha2 [Su... 226 1e-74
Alignment gi|XP_003131478.1| PREDICTED: LOW QUALITY PROTEIN: keratin, typ... 220 2e-74
>ref|XP_003131485.1| PREDICTED: keratin, type I cytoskeletal 19-like [Sus scrofa].
Length = 404
Score = 387 bits (993), Expect(2) = e-140
Identities = 210/259 (81%), Positives = 210/259 (81%)
Frame = +1
Query: 118 FGGLGGGSVRFSAGGAFRAPSIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 297
FGGLGGGSVRFSAGGAFRAPSIH
Sbjct: 15 FGGLGGGSVRFSAGGAFRAPSIHGGSGGRGVSVSSARFVSSSSSGGYGGGYGGGYAGALA 74
Query: 298 XXXXXXXXXXXXNEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARD 477
NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARD
Sbjct: 75 GSDGLLAG----NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARD 130
Query: 478 YSHYFKTIEDLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGL 657
YSHYFKTIEDLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGL
Sbjct: 131 YSHYFKTIEDLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGL 190
Query: 658 RRVLDELTLARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLA 837
RRVLDELTLARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLA
Sbjct: 191 RRVLDELTLARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLA 250
Query: 838 KILSDMRSQYEVMAEQNRK 894
KILSDMRSQYEVMAEQNRK
Sbjct: 251 KILSDMRSQYEVMAEQNRK 269
Score = 130 bits (327), Expect(2) = e-140
Identities = 66/68 (97%), Positives = 68/68 (100%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQL+MKAALEGTL
Sbjct: 269 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTL 328
Query: 1071 AKTEARFG 1094
A+TEARFG
Sbjct: 329 AETEARFG 336
>ref|XP_003131486.1| PREDICTED: keratin, type I cytoskeletal 15-like [Sus scrofa].
Length = 460
Score = 275 bits (704), Expect(2) = 2e-98
Identities = 134/188 (71%), Positives = 161/188 (85%), Gaps = 1/188 (0%)
Frame = +1
Query: 334 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPG-PARDYSHYFKTIEDL 510
NEK+TMQNLNDRLASYL+KVRALE+AN DLEVKI DWY+KQ P P RDYS YFKT+E+L
Sbjct: 110 NEKITMQNLNDRLASYLDKVRALEEANADLEVKIHDWYKKQSPSSPERDYSPYFKTMEEL 169
Query: 511 RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 690
RDKI A I+NS+++L+IDNARLAADDFR K+E E ALR VEADINGLRRVLDELTL +
Sbjct: 170 RDKIRAAAIDNSRVILEIDNARLAADDFRLKYENELALRQGVEADINGLRRVLDELTLTK 229
Query: 691 TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 870
TDLE+QIE L EELAYLKKNHEEE+ Q+ GQV+VE+D+APG+DL ++L++MR QYE
Sbjct: 230 TDLEMQIESLNEELAYLKKNHEEEMKEFSNQLAGQVNVEMDAAPGVDLTRVLAEMREQYE 289
Query: 871 VMAEQNRK 894
+AE+NR+
Sbjct: 290 AIAEKNRR 297
Score = 102 bits (255), Expect(2) = 2e-98
Identities = 49/67 (73%), Positives = 60/67 (89%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
+DAEAWF S+TEELN+EVA +TE +Q SKTE+TDLRRT+QGLEIELQSQL+MKA LE +L
Sbjct: 297 RDAEAWFFSKTEELNKEVASNTEMIQTSKTEITDLRRTVQGLEIELQSQLSMKAGLESSL 356
Query: 1071 AKTEARF 1091
A+TE R+
Sbjct: 357 AETECRY 363
>ref|XP_003131484.1| PREDICTED: keratin, type I cytoskeletal 13-like [Sus scrofa].
Length = 454
Score = 279 bits (713), Expect(2) = 5e-95
Identities = 139/188 (73%), Positives = 161/188 (85%), Gaps = 1/188 (0%)
Frame = +1
Query: 334 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPG-PARDYSHYFKTIEDL 510
NEK+TMQNLNDRLASYLEKVRALE+AN DLEVKIRDWYQKQ P P RDYS YFKTIE+L
Sbjct: 101 NEKITMQNLNDRLASYLEKVRALEEANTDLEVKIRDWYQKQSPSSPERDYSPYFKTIEEL 160
Query: 511 RDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLAR 690
RDKI A IEN+++VLQIDNARLAADDFR K+E E LR SVEADINGLRRVLDELTL +
Sbjct: 161 RDKIQAANIENNRVVLQIDNARLAADDFRLKYENELTLRQSVEADINGLRRVLDELTLTK 220
Query: 691 TDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYE 870
TDLE+QIE L EELA+LKKNHEEE+ +V GQV+VE+D+ PG+DL ++L++MR QYE
Sbjct: 221 TDLEMQIESLNEELAFLKKNHEEEMKEFSNRVVGQVNVEMDATPGVDLTRVLAEMREQYE 280
Query: 871 VMAEQNRK 894
MAE+NR+
Sbjct: 281 AMAEKNRR 288
Score = 87.8 bits (216), Expect(2) = 5e-95
Identities = 42/67 (62%), Positives = 53/67 (79%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
++AE WF + EELN+EV T +Q SKTE+T+LRRTLQGLEIELQSQL+ KA LE +L
Sbjct: 288 REAEEWFNKKIEELNKEVISSTALIQTSKTEITELRRTLQGLEIELQSQLSTKAGLENSL 347
Query: 1071 AKTEARF 1091
A+TE R+
Sbjct: 348 AETECRY 354
>ref|XP_003131509.1| PREDICTED: keratin, type I cytoskeletal 12 [Sus scrofa].
Length = 494
Score = 249 bits (635), Expect(2) = 1e-85
Identities = 127/192 (66%), Positives = 156/192 (81%), Gaps = 5/192 (2%)
Frame = +1
Query: 334 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPA-----RDYSHYFKT 498
+EK TM+NLNDRLASYL+KVRALE+AN DLE KIR+WY+ +G G DYS YF
Sbjct: 123 SEKETMKNLNDRLASYLDKVRALEEANTDLENKIREWYETRGSGTGDPRSQSDYSKYFPL 182
Query: 499 IEDLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDEL 678
IE+L++KI+ A+I N++++LQIDNARLAA+DFR K+E E AL +VEADINGLRRVLDEL
Sbjct: 183 IEELKNKIISASIANAQLILQIDNARLAAEDFRMKYENEVALCQNVEADINGLRRVLDEL 242
Query: 679 TLARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMR 858
TL R DLE QIE L EELAYLKKNHEEE+ + + GQVSVE+D+APG+DL K+L+DMR
Sbjct: 243 TLVRADLETQIETLNEELAYLKKNHEEELQSFRAGGPGQVSVEMDAAPGVDLTKLLNDMR 302
Query: 859 SQYEVMAEQNRK 894
+QYE +AEQNRK
Sbjct: 303 AQYEAIAEQNRK 314
Score = 86.3 bits (212), Expect(2) = 1e-85
Identities = 43/67 (64%), Positives = 54/67 (80%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
KDAEAWF ++ EL +E++ +TEQLQ SK+EVTDLRR LQ LEIELQSQL MK +LE +L
Sbjct: 314 KDAEAWFIEKSGELRKEISTNTEQLQSSKSEVTDLRRALQNLEIELQSQLAMKKSLEDSL 373
Query: 1071 AKTEARF 1091
A+TE +
Sbjct: 374 AETEGDY 380
>ref|XP_003131508.1| PREDICTED: keratin, type I cytoskeletal 10-like [Sus scrofa].
Length = 613
Score = 249 bits (637), Expect(2) = 6e-84
Identities = 124/190 (65%), Positives = 157/190 (82%), Gaps = 3/190 (1%)
Frame = +1
Query: 334 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGP---GPARDYSHYFKTIE 504
NEK+TMQNLNDRLASYL+KVRALE +N +LEVKI++WY K G RDYS Y+K IE
Sbjct: 157 NEKVTMQNLNDRLASYLDKVRALEDSNYELEVKIKEWYDKHGNVGRREPRDYSKYYKIIE 216
Query: 505 DLRDKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTL 684
DL+++I+ T++N+ I++Q+DNARLAADDFR K+E E LR SVEADINGLRRVLDELTL
Sbjct: 217 DLKNQIINLTVDNANILIQVDNARLAADDFRMKYENEVTLRQSVEADINGLRRVLDELTL 276
Query: 685 ARTDLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQ 864
+TDLE+QIE L EELAYLKKNHEEE+ L+ G V+VE+++APG+DL ++L++MRSQ
Sbjct: 277 TKTDLEMQIESLNEELAYLKKNHEEEMRDLQNVSTGDVNVEMNAAPGVDLTELLNNMRSQ 336
Query: 865 YEVMAEQNRK 894
YE +AEQNR+
Sbjct: 337 YEQLAEQNRR 346
Score = 80.1 bits (196), Expect(2) = 6e-84
Identities = 37/67 (55%), Positives = 53/67 (79%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
+DAEAWF +++EL E+ + EQ+ K+E+T+LRRT+QGLEIELQSQL +K +LE +L
Sbjct: 346 RDAEAWFNEKSKELTTEINTNIEQVSSYKSEITELRRTIQGLEIELQSQLALKQSLEASL 405
Query: 1071 AKTEARF 1091
A+TE R+
Sbjct: 406 AETEGRY 412
>ref|XP_003131480.2| PREDICTED: keratin, type I cuticular Ha6 isoform 2 [Sus scrofa].
Length = 459
Score = 237 bits (605), Expect(2) = 2e-80
Identities = 118/187 (63%), Positives = 148/187 (79%)
Frame = +1
Query: 334 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLR 513
NEK TMQ LNDRLA+YLEKVR LE+ N +LE +IR+WY+ Q P DY YFKTIE+L+
Sbjct: 92 NEKETMQFLNDRLANYLEKVRQLERDNAELESRIREWYESQIPYICPDYQAYFKTIEELQ 151
Query: 514 DKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLART 693
KIL +N+++VLQIDNA+LAADDFRTK+ETE +R VEAD NGLRR+LDELTL +
Sbjct: 152 QKILITKADNARLVLQIDNAKLAADDFRTKYETELGMRQLVEADTNGLRRILDELTLCKA 211
Query: 694 DLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEV 873
DLE+Q+E LKEEL LKKNHEEE++ L+ Q+G +++VEVD+AP +DL KIL DMR QYE
Sbjct: 212 DLEMQVESLKEELICLKKNHEEEVNTLRCQLGDRLNVEVDAAPPVDLNKILDDMRCQYEA 271
Query: 874 MAEQNRK 894
+ E NR+
Sbjct: 272 LVENNRR 278
Score = 80.5 bits (197), Expect(2) = 2e-80
Identities = 37/67 (55%), Positives = 53/67 (79%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
+D EAWF ++TEELN++V +EQLQ +TE+ +LRR + LEIELQ+Q +M+ +LE TL
Sbjct: 278 RDVEAWFNTQTEELNQQVVSSSEQLQCCQTEIIELRRNVNALEIELQAQHSMRNSLEATL 337
Query: 1071 AKTEARF 1091
A+TEAR+
Sbjct: 338 AETEARY 344
>ref|XP_003131482.2| PREDICTED: keratin, type I cuticular Ha5-like [Sus scrofa].
Length = 493
Score = 228 bits (581), Expect(2) = 2e-76
Identities = 110/187 (58%), Positives = 150/187 (80%)
Frame = +1
Query: 334 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLR 513
NEK TMQ+LNDRLASYLEKVR LE+ N +LE +IR+W ++Q P DY YF+TIE+L+
Sbjct: 134 NEKETMQSLNDRLASYLEKVRRLERENSELEGRIREWCEQQEPYLCPDYQSYFQTIEELQ 193
Query: 514 DKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLART 693
K L EN+++V+QIDNA+LAADDFR+K+ETE ++R VE+D+NGLRR+LD+LTL +
Sbjct: 194 KKTLCTKAENARLVVQIDNAKLAADDFRSKYETEVSMRQLVESDMNGLRRILDDLTLCKA 253
Query: 694 DLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEV 873
DLE Q+E LKEEL LKKNHEEE+++L+ Q+G +++VEVD+AP +DL ++L +MR QYE
Sbjct: 254 DLEAQVESLKEELLCLKKNHEEEVNSLRCQLGDRLNVEVDAAPPVDLNRVLDEMRCQYET 313
Query: 874 MAEQNRK 894
+ E NR+
Sbjct: 314 LVENNRR 320
Score = 76.6 bits (187), Expect(2) = 2e-76
Identities = 36/67 (53%), Positives = 52/67 (77%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
+DAE WF ++TEELN++V +EQLQ + ++ +LRR + LEIELQ+Q +M+ ALE TL
Sbjct: 320 RDAEDWFNTQTEELNQQVVTSSEQLQSCQADIMELRRNVNALEIELQAQHSMRDALESTL 379
Query: 1071 AKTEARF 1091
A+TEAR+
Sbjct: 380 AETEARY 386
>ref|XP_003131477.1| PREDICTED: keratin, type I microfibrillar 48 kDa, component
8C-1-like [Sus scrofa].
Length = 414
Score = 224 bits (570), Expect(2) = 2e-75
Identities = 112/187 (59%), Positives = 148/187 (79%)
Frame = +1
Query: 334 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLR 513
NEK TMQ LNDRLASYLEKVR LE+ N +LE +I++ Q+Q P +Y YF+TIE+L+
Sbjct: 55 NEKETMQFLNDRLASYLEKVRQLERDNAELERQIQERSQQQEPLVCPNYQSYFRTIEELQ 114
Query: 514 DKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLART 693
KIL + EN+++V+QIDNA+LAADDFRTK+ETE LR VE+DINGLRR+LDELTL +
Sbjct: 115 QKILCSKSENARLVVQIDNAKLAADDFRTKYETELGLRQLVESDINGLRRILDELTLCKA 174
Query: 694 DLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEV 873
DLE Q+E LKEEL LK NHEEE+++L+ Q+G ++++EVD+AP +DL +LS+ RSQYE
Sbjct: 175 DLEAQVESLKEELLCLKSNHEEEVNSLRSQLGDRLNIEVDAAPTVDLNSVLSETRSQYEA 234
Query: 874 MAEQNRK 894
+ E NR+
Sbjct: 235 LVETNRR 241
Score = 77.4 bits (189), Expect(2) = 2e-75
Identities = 35/70 (50%), Positives = 51/70 (72%)
Frame = +3
Query: 882 TKPKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALE 1061
T +D E WF +TEELN++V +EQLQ + E+ +LRRT+ LE+ELQ+Q N++ +LE
Sbjct: 238 TNRRDVEEWFARQTEELNKQVVSSSEQLQSYQAEIIELRRTVNALEVELQAQHNLRDSLE 297
Query: 1062 GTLAKTEARF 1091
TL +TEAR+
Sbjct: 298 NTLTETEARY 307
>ref|XP_003131481.1| PREDICTED: keratin, type I cuticular Ha2 [Sus scrofa].
Length = 460
Score = 226 bits (575), Expect(2) = 1e-74
Identities = 111/187 (59%), Positives = 146/187 (78%)
Frame = +1
Query: 334 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLR 513
NEK T+Q LNDRLA YLEKVR LEQ N +LE KI++ Q Q P + +Y YF+TIE+L+
Sbjct: 107 NEKETLQFLNDRLAKYLEKVRQLEQDNAELESKIQEASQSQVPTLSSNYHSYFRTIEELQ 166
Query: 514 DKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLART 693
KIL EN++ ++ +DNA+LAADDFRTK+ETE A+R VEAD NGLRR+LDELTL +
Sbjct: 167 QKILCTRAENARTIVHMDNAKLAADDFRTKYETELAMRQLVEADTNGLRRILDELTLCKA 226
Query: 694 DLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEV 873
DLE+Q+E LKEEL LKKNHEEE+ AL+GQ+G ++++EVD+AP +DL ++L +MR QYE
Sbjct: 227 DLEMQVESLKEELMCLKKNHEEEVGALQGQLGDRLNIEVDAAPPVDLNRVLEEMRCQYEA 286
Query: 874 MAEQNRK 894
+ E NR+
Sbjct: 287 LVESNRR 293
Score = 73.2 bits (178), Expect(2) = 1e-74
Identities = 35/67 (52%), Positives = 51/67 (76%)
Frame = +3
Query: 891 KDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALEGTL 1070
+D E WFT + EELN++VA +EQLQ +++ DLRRT+ LEIELQ+Q +++ +LE TL
Sbjct: 293 RDVEEWFTMQMEELNQQVATSSEQLQSYQSDAIDLRRTVNMLEIELQAQHSLRDSLENTL 352
Query: 1071 AKTEARF 1091
+TEAR+
Sbjct: 353 TETEARY 359
>ref|XP_003131478.1| PREDICTED: LOW QUALITY PROTEIN: keratin, type I cuticular Ha4-like
[Sus scrofa].
Length = 435
Score = 220 bits (561), Expect(2) = 2e-74
Identities = 108/187 (57%), Positives = 148/187 (79%)
Frame = +1
Query: 334 NEKLTMQNLNDRLASYLEKVRALEQANGDLEVKIRDWYQKQGPGPARDYSHYFKTIEDLR 513
NEK TMQ LNDRLASYLEKVR LE+ N +LE +I++ Q+Q P +Y YF+TIE+L+
Sbjct: 99 NEKETMQFLNDRLASYLEKVRQLERDNAELERQIQERSQQQEPLVCPNYQSYFRTIEELQ 158
Query: 514 DKILGATIENSKIVLQIDNARLAADDFRTKFETEQALRLSVEADINGLRRVLDELTLART 693
KIL A EN+++V+Q+DNA+LAADDFRTK+E E++ R VE+DIN LRR+LDELTL +
Sbjct: 159 QKILSAKSENTRLVVQVDNAKLAADDFRTKYEVERSSRQLVESDINSLRRILDELTLCKA 218
Query: 694 DLELQIEGLKEELAYLKKNHEEEISALKGQVGGQVSVEVDSAPGIDLAKILSDMRSQYEV 873
DLE Q+E L+EEL LKKNHEEE+++L+ Q+G ++++EVD+AP +DL +L++ RSQYE
Sbjct: 219 DLETQVESLREELLCLKKNHEEEVNSLRSQLGDRLNIEVDAAPTVDLNSVLNETRSQYEA 278
Query: 874 MAEQNRK 894
+ E NR+
Sbjct: 279 LVETNRR 285
Score = 77.4 bits (189), Expect(2) = 2e-74
Identities = 35/70 (50%), Positives = 51/70 (72%)
Frame = +3
Query: 882 TKPKDAEAWFTSRTEELNREVAGHTEQLQISKTEVTDLRRTLQGLEIELQSQLNMKAALE 1061
T +D E WF +TEELN++V +EQLQ + E+ +LRRT+ LE+ELQ+Q N++ +LE
Sbjct: 282 TNRRDVEEWFARQTEELNKQVVSSSEQLQSYQAEIIELRRTVNALEVELQAQHNLRDSLE 341
Query: 1062 GTLAKTEARF 1091
TL +TEAR+
Sbjct: 342 NTLTETEARY 351
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,634,006
Number of extensions: 698694
Number of successful extensions: 4133
Number of sequences better than 1.0e-05: 58
Number of HSP's gapped: 3999
Number of HSP's successfully gapped: 94
Length of query: 364
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 264
Effective length of database: 8,854,232
Effective search space: 2337517248
Effective search space used: 2337517248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001868
(1094 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 456 e-125
Sscrofa_Chr05 64 2e-07
>Sscrofa_Chr12
|| Length = 63588571
Score = 456 bits (230), Expect = e-125
Identities = 230/230 (100%)
Strand = Plus / Plus
Query: 19 attcctccagccgccccgcagcacctccgaccggtgtcgcccgcgtctgccttcgccatg 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21536799 attcctccagccgccccgcagcacctccgaccggtgtcgcccgcgtctgccttcgccatg 21536858
Query: 79 acttcctacagctatcgccagtcgtcggccacctcgtccttcgggggtctgggcggcggc 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21536859 acttcctacagctatcgccagtcgtcggccacctcgtccttcgggggtctgggcggcggc 21536918
Query: 139 tccgtgcgcttcagcgcgggaggcgccttccgcgcccccagcatccacgggggctccggc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21536919 tccgtgcgcttcagcgcgggaggcgccttccgcgcccccagcatccacgggggctccggc 21536978
Query: 199 ggccgcggcgtgtcggtgtcgtccgcccgcttcgtgtcctcgtcctcctc 248
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21536979 ggccgcggcgtgtcggtgtcgtccgcccgcttcgtgtcctcgtcctcctc 21537028
Score = 416 bits (210), Expect = e-113
Identities = 216/218 (99%)
Strand = Plus / Plus
Query: 302 ctctggccggttccgacgggctgctggcgggcaacgagaaactcaccatgcagaacctca 361
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 21537070 ctctggccggttccgacgggctgctggcgggcaacgagaagctcaccatgcagaacctca 21537129
Query: 362 acgaccgcctggcctcctacctggagaaggtgcgcgccttggagcaggccaacggcgacc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 21537130 acgaccgcctggcctcctacctggagaaggtgcgcgccttggagcaggccaacggtgacc 21537189
Query: 422 tggaggtgaagatccgcgactggtaccagaagcaggggcccgggcctgcccgcgactaca 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21537190 tggaggtgaagatccgcgactggtaccagaagcaggggcccgggcctgcccgcgactaca 21537249
Query: 482 gccactacttcaagaccatcgaggacctgcgggacaag 519
||||||||||||||||||||||||||||||||||||||
Sbjct: 21537250 gccactacttcaagaccatcgaggacctgcgggacaag 21537287
Score = 305 bits (154), Expect = 3e-80
Identities = 154/154 (100%)
Strand = Plus / Plus
Query: 607 gagacagagcaggccctgcgcctgagcgtggaggccgacatcaacggcctgcgcagggtg 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21538980 gagacagagcaggccctgcgcctgagcgtggaggccgacatcaacggcctgcgcagggtg 21539039
Query: 667 ctggacgagctgaccctggccaggaccgacctggagctgcagatcgaaggcctgaaggaa 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21539040 ctggacgagctgaccctggccaggaccgacctggagctgcagatcgaaggcctgaaggaa 21539099
Query: 727 gagctggcctacctgaagaagaaccacgaggagg 760
||||||||||||||||||||||||||||||||||
Sbjct: 21539100 gagctggcctacctgaagaagaaccacgaggagg 21539133
Score = 278 bits (140), Expect = 6e-72
Identities = 159/164 (96%), Gaps = 1/164 (0%)
Strand = Plus / Plus
Query: 758 aggaaatcagtgccctgaagggccaggtgggcggccaggtcagtgtggaggttgattcgg 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21539379 aggaaatcagtgccctgaagggccaggtgggcggccaggtcagtgtggaggttgattcgg 21539438
Query: 818 ctccgggcatcgacctagccaagatcctgagcgacatgagaagccagtatgaggtcatgg 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21539439 ctccgggcatcgacctagccaagatcctgagcgacatgagaagccagtatgaggtcatgg 21539498
Query: 878 ctgaacaaaacc-gaaagatgctgaagcctggttcaccagccgg 920
|||| || |||| ||| |||||||| ||||||||||||||||||
Sbjct: 21539499 ctgagcagaaccggaaggatgctgaggcctggttcaccagccgg 21539542
Score = 262 bits (132), Expect = 4e-67
Identities = 159/168 (94%)
Strand = Plus / Plus
Query: 346 accatgcagaacctcaacgaccgcctggcctcctacctggagaaggtgcgcgccttggag 405
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 21316374 accatgcagaacctcaacgaccgcctggcctcctacctggacaaggtgcgcgccctggag 21316433
Query: 406 caggccaacggcgacctggaggtgaagatccgcgactggtaccagaagcaggggcccggg 465
||||||||| |||||||||||||||||||| |||||||||| |||||||||| ||||||
Sbjct: 21316434 gaggccaacgccgacctggaggtgaagatccacgactggtacaagaagcagggccccggg 21316493
Query: 466 cctgcccgcgactacagccactacttcaagaccatcgaggacctgcgg 513
|||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 21316494 cctgcccgcgactacagcgcctacttcaagaccatcgaggacctgcgg 21316541
Score = 238 bits (120), Expect = 5e-60
Identities = 174/192 (90%)
Strand = Plus / Plus
Query: 319 gggctgctggcgggcaacgagaaactcaccatgcagaacctcaacgaccgcctggcctcc 378
||||||||||| || | |||||| |||||||||||||||||| |||||||||||||||
Sbjct: 21326624 gggctgctggccggaagcgagaaggccaccatgcagaacctcaatgaccgcctggcctcc 21326683
Query: 379 tacctggagaaggtgcgcgccttggagcaggccaacggcgacctggaggtgaagatccgc 438
|||||||| |||||||||||| ||||| ||||||||| ||||||||||||||||||||||
Sbjct: 21326684 tacctggacaaggtgcgcgccctggaggaggccaacgccgacctggaggtgaagatccgc 21326743
Query: 439 gactggtaccagaagcaggggcccgggcctgcccgcgactacagccactacttcaagacc 498
||||||||||||| ||||| || ||||| || | |||||||||||||||||||||||||
Sbjct: 21326744 gactggtaccagaggcaggccccagggcccgctcccgactacagccactacttcaagacc 21326803
Query: 499 atcgaggacctg 510
||||||||||||
Sbjct: 21326804 atcgaggacctg 21326815
Score = 236 bits (119), Expect = 2e-59
Identities = 125/127 (98%)
Strand = Plus / Plus
Query: 920 gactgaggagctgaaccgggaggtcgctggccacacggagcagctgcagatcagcaagac 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21539633 gactgaggagctgaaccgggaggtcgctggccacacggagcagctgcagatcagcaagac 21539692
Query: 980 ggaggtcaccgatctgcggcgcaccctccagggtctggagatcgagctgcagtctcagct 1039
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21539693 ggaagtcaccgatctgcggcgcaccctccagggtctggagatcgagctgcagtctcagct 21539752
Query: 1040 caacatg 1046
|| ||||
Sbjct: 21539753 cagcatg 21539759
Score = 216 bits (109), Expect = 2e-53
Identities = 133/141 (94%)
Strand = Plus / Minus
Query: 620 ccctgcgcctgagcgtggaggccgacatcaacggcctgcgcagggtgctggacgagctga 679
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21844461 ccctgcgccagagcgtggaggccgacatcaacggcctgcgcagggtgctggacgagctga 21844402
Query: 680 ccctggccaggaccgacctggagctgcagatcgaaggcctgaaggaagagctggcctacc 739
||||| ||| ||||||||||||| ||||||| ||| ||||||| || |||||||||||||
Sbjct: 21844401 ccctgaccaagaccgacctggagatgcagattgaaagcctgaatgaggagctggcctacc 21844342
Query: 740 tgaagaagaaccacgaggagg 760
|||||||||||||||||||||
Sbjct: 21844341 tgaagaagaaccacgaggagg 21844321
Score = 214 bits (108), Expect = 8e-53
Identities = 180/204 (88%)
Strand = Plus / Plus
Query: 316 gacgggctgctggcgggcaacgagaaactcaccatgcagaacctcaacgaccgcctggcc 375
|||||||| |||| ||||| |||||| | ||||||||||||||||||||||||||||||
Sbjct: 21339782 gacgggctcctggtgggcagcgagaaggtgaccatgcagaacctcaacgaccgcctggcc 21339841
Query: 376 tcctacctggagaaggtgcgcgccttggagcaggccaacggcgacctggaggtgaagatc 435
||||||||||| |||||||||||| ||||| ||||||||| |||||||||||||||||||
Sbjct: 21339842 tcctacctggacaaggtgcgcgccctggaggaggccaacgccgacctggaggtgaagatc 21339901
Query: 436 cgcgactggtaccagaagcaggggcccgggcctgcccgcgactacagccactacttcaag 495
|||||||||||||||| |||| |||| | || |||||||||| ||||||||||
Sbjct: 21339902 cgcgactggtaccagaggcagcggccggctgagtccaaggactacagcccctacttcaag 21339961
Query: 496 accatcgaggacctgcgggacaag 519
|||||||||||||||||| |||||
Sbjct: 21339962 accatcgaggacctgcggaacaag 21339985
Score = 210 bits (106), Expect = 1e-51
Identities = 171/192 (89%), Gaps = 3/192 (1%)
Strand = Plus / Minus
Query: 331 ggcaacgagaaactcaccatgcagaacctcaacgaccgcctggcctcctacctggagaag 390
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21479447 ggcaacgagaagatcaccatgcagaacctcaacgaccgcctggcctcctacctggagaag 21479388
Query: 391 gtgcgcgccttggagcaggccaacggcgacctggaggtgaagatccgcgactggtaccag 450
||||||||| ||||| |||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 21479387 gtgcgcgccctggaggaggccaacactgacctggaggtgaagatccgtgactggtaccag 21479328
Query: 451 aagcaggggcc---cgggcctgcccgcgactacagccactacttcaagaccatcgaggac 507
|||||| | || | | || | ||||||||||||| |||||||||||||||||||||
Sbjct: 21479327 aagcagagccccagcagcccggagcgcgactacagcccctacttcaagaccatcgaggag 21479268
Query: 508 ctgcgggacaag 519
|| |||||||||
Sbjct: 21479267 ctccgggacaag 21479256
Score = 194 bits (98), Expect = 7e-47
Identities = 169/192 (88%), Gaps = 3/192 (1%)
Strand = Plus / Minus
Query: 331 ggcaacgagaaactcaccatgcagaacctcaacgaccgcctggcctcctacctggagaag 390
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 21494024 ggcaacgagaagatcaccatgcagaacctcaacgaccgcctggcctcctacctggacaag 21493965
Query: 391 gtgcgcgccttggagcaggccaacggcgacctggaggtgaagatccgcgactggtaccag 450
||||||||| ||||| ||||||||| |||||||||||||||||||| ||||||||| ||
Sbjct: 21493964 gtgcgcgccctggaggaggccaacgccgacctggaggtgaagatccatgactggtacaag 21493905
Query: 451 aagcaggggcc---cgggcctgcccgcgactacagccactacttcaagaccatcgaggac 507
|||||| | || | | || | ||||||||||||| ||||||||||||||| |||||
Sbjct: 21493904 aagcagagccccagcagcccggagcgcgactacagcccctacttcaagaccatggaggag 21493845
Query: 508 ctgcgggacaag 519
|| |||||||||
Sbjct: 21493844 ctccgggacaag 21493833
Score = 192 bits (97), Expect = 3e-46
Identities = 130/141 (92%)
Strand = Plus / Minus
Query: 620 ccctgcgcctgagcgtggaggccgacatcaacggcctgcgcagggtgctggacgagctga 679
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 21477790 ccctgcgccagagcgtggaggccgacatcaacggcctgcgcagggtgctggatgagctga 21477731
Query: 680 ccctggccaggaccgacctggagctgcagatcgaaggcctgaaggaagagctggcctacc 739
|| || ||| ||||||||||||| |||||||||| ||||||| || |||||||||| ||
Sbjct: 21477730 ccttgaccaagaccgacctggagatgcagatcgagagcctgaacgaggagctggccttcc 21477671
Query: 740 tgaagaagaaccacgaggagg 760
|||||||||||||||||||||
Sbjct: 21477670 tgaagaagaaccacgaggagg 21477650
Score = 182 bits (92), Expect = 3e-43
Identities = 134/148 (90%)
Strand = Plus / Minus
Query: 613 gagcaggccctgcgcctgagcgtggaggccgacatcaacggcctgcgcagggtgctggac 672
|||| ||| ||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 21492854 gagctggcgctgcgccagggcgtggaggccgacatcaacggcctgcgcagggtgctggac 21492795
Query: 673 gagctgaccctggccaggaccgacctggagctgcagatcgaaggcctgaaggaagagctg 732
||||||||| || ||| ||| ||||||||| |||||||||| ||||||| || ||||||
Sbjct: 21492794 gagctgaccttgaccaagactgacctggagatgcagatcgagagcctgaacgaggagctg 21492735
Query: 733 gcctacctgaagaagaaccacgaggagg 760
|||||||||||||||||||| |||||||
Sbjct: 21492734 gcctacctgaagaagaaccatgaggagg 21492707
Score = 174 bits (88), Expect = 7e-41
Identities = 127/140 (90%)
Strand = Plus / Plus
Query: 621 cctgcgcctgagcgtggaggccgacatcaacggcctgcgcagggtgctggacgagctgac 680
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 21342011 cctgcgcatgagcgtggaggccgacatcaacgggctgcgcagggtgctggacgagctgac 21342070
Query: 681 cctggccaggaccgacctggagctgcagatcgaaggcctgaaggaagagctggcctacct 740
||||||||| ||||||||||| |||||||||| |||| ||||| ||||||||||||||
Sbjct: 21342071 cctggccagagccgacctggagatgcagatcgagagcctcaaggaggagctggcctacct 21342130
Query: 741 gaagaagaaccacgaggagg 760
||||||||||||||||
Sbjct: 21342131 ccgaaagaaccacgaggagg 21342150
Score = 172 bits (87), Expect = 3e-40
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 518 agattctcggtgccaccattgagaactccaagatagtcctgcagatcgacaacgcccgtc 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21538664 agattctcggtgccaccattgagaactccaagatagtcctgcagatcgacaacgcccgtc 21538723
Query: 578 tggctgcagatgacttccgaaccaagt 604
|||||||||||||||||||||||||||
Sbjct: 21538724 tggctgcagatgacttccgaaccaagt 21538750
Score = 167 bits (84), Expect = 2e-38
Identities = 126/140 (90%)
Strand = Plus / Plus
Query: 621 cctgcgcctgagcgtggaggccgacatcaacggcctgcgcagggtgctggacgagctgac 680
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 21320070 cctgcgcatgagcgtggaggccgacatcaacgggctgcgcagggtgctggacgagctgac 21320129
Query: 681 cctggccaggaccgacctggagctgcagatcgaaggcctgaaggaagagctggcctacct 740
||||||||| ||||||||||| |||||||||| ||| ||||| ||||||||||||||
Sbjct: 21320130 cctggccagagccgacctggagatgcagatcgagaacctcaaggaggagctggcctacct 21320189
Query: 741 gaagaagaaccacgaggagg 760
||||||||||||||||
Sbjct: 21320190 ccgaaagaaccacgaggagg 21320209
Score = 165 bits (83), Expect = 6e-38
Identities = 128/143 (89%)
Strand = Plus / Minus
Query: 618 ggccctgcgcctgagcgtggaggccgacatcaacggcctgcgcagggtgctggacgagct 677
||||||| ||| || ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 21883754 ggccctgtgccagaacgtggaggccgacatcaacgggctgcgcagggtgctggacgagct 21883695
Query: 678 gaccctggccaggaccgacctggagctgcagatcgaaggcctgaaggaagagctggccta 737
|||||||| ||| ||||||||||| |||||||| |||||| || |||||||||||
Sbjct: 21883694 gaccctggtcagagccgacctggagacccagatcgagaccctgaacgaggagctggccta 21883635
Query: 738 cctgaagaagaaccacgaggagg 760
|||||||||||||||||||||||
Sbjct: 21883634 cctgaagaagaaccacgaggagg 21883612
Score = 155 bits (78), Expect = 6e-35
Identities = 135/154 (87%)
Strand = Plus / Plus
Query: 607 gagacagagcaggccctgcgcctgagcgtggaggccgacatcaacggcctgcgcagggtg 666
||||| |||||||||||||| |||||||||||||||||||||| || ||||||||||||
Sbjct: 21328329 gagacggagcaggccctgcgtgtgagcgtggaggccgacatcaatgggctgcgcagggtg 21328388
Query: 667 ctggacgagctgaccctggccaggaccgacctggagctgcagatcgaaggcctgaaggaa 726
||||| ||||||||||||||||| |||| |||||| |||||||||| ||| |||||
Sbjct: 21328389 ctggatgagctgaccctggccagagccgatctggagatgcagatcgagaacctcaaggag 21328448
Query: 727 gagctggcctacctgaagaagaaccacgaggagg 760
|||||||||||||| ||||||||||||||||
Sbjct: 21328449 gagctggcctacctccgaaagaaccacgaggagg 21328482
Score = 121 bits (61), Expect = 8e-25
Identities = 94/105 (89%)
Strand = Plus / Minus
Query: 331 ggcaacgagaaactcaccatgcagaacctcaacgaccgcctggcctcctacctggagaag 390
||||||||||| | ||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 21785280 ggcaacgagaaggtgaccatgcagaacctcaatgaccgcctggcctcctacctggacaac 21785221
Query: 391 gtgcgcgccttggagcaggccaacggcgacctggaggtgaagatc 435
||||||||| ||||| ||||||||| |||||||||| |||||||
Sbjct: 21785220 gtgcgcgccctggaggaggccaacgccgacctggagcagaagatc 21785176
Score = 121 bits (61), Expect = 8e-25
Identities = 94/105 (89%)
Strand = Plus / Minus
Query: 331 ggcaacgagaaactcaccatgcagaacctcaacgaccgcctggcctcctacctggagaag 390
||||||||||| | ||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 21811601 ggcaacgagaaggtgaccatgcagaacctcaatgaccgcctggcctcctacctggacaac 21811542
Query: 391 gtgcgcgccttggagcaggccaacggcgacctggaggtgaagatc 435
||||||||| ||||| ||||||||| |||||||||| |||||||
Sbjct: 21811541 gtgcgcgccctggaggaggccaacgccgacctggagcagaagatc 21811497
Score = 107 bits (54), Expect = 1e-20
Identities = 66/70 (94%)
Strand = Plus / Minus
Query: 346 accatgcagaacctcaacgaccgcctggcctcctacctggagaaggtgcgcgccttggag 405
||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 21958899 accatgcggaacctcaacgaccgcctggcctcctacctggacaaggtgcgcgccctggag 21958840
Query: 406 caggccaacg 415
|||||||||
Sbjct: 21958839 gaggccaacg 21958830
Score = 89.7 bits (45), Expect = 3e-15
Identities = 48/49 (97%)
Strand = Plus / Plus
Query: 1046 gaaagccgccctggaaggcacgctggcgaaaacggaggctcgcttcgga 1094
|||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 21539895 gaaagccgccctggaaggcacgctggcggaaacggaggctcgcttcgga 21539943
Score = 85.7 bits (43), Expect = 5e-14
Identities = 61/67 (91%)
Strand = Plus / Minus
Query: 694 gacctggagctgcagatcgaaggcctgaaggaagagctggcctacctgaagaagaaccac 753
||||||||| |||||||||| ||||||| || ||||||||||||||||||||||||||
Sbjct: 21444549 gacctggagatgcagatcgagagcctgaacgaggagctggcctacctgaagaagaaccat 21444490
Query: 754 gaggagg 760
|||||||
Sbjct: 21444489 gaggagg 21444483
Score = 81.8 bits (41), Expect = 7e-13
Identities = 107/129 (82%)
Strand = Plus / Minus
Query: 632 gcgtggaggccgacatcaacggcctgcgcagggtgctggacgagctgaccctggccagga 691
||||||| || ||||||| ||| |||||| ||||||||||||||||||||||| |||||
Sbjct: 21810030 gcgtggacgcggacatcagcggtctgcgccgggtgctggacgagctgaccctgtgcagga 21809971
Query: 692 ccgacctggagctgcagatcgaaggcctgaaggaagagctggcctacctgaagaagaacc 751
||||| | ||| | ||| | || ||||| || |||||||| ||||| |||||||| |
Sbjct: 21809970 ccgacttagagattcagctggagaccctgagcgaggagctggcttacctcaagaagaatc 21809911
Query: 752 acgaggagg 760
|||||||||
Sbjct: 21809910 acgaggagg 21809902
Score = 75.8 bits (38), Expect = 5e-11
Identities = 62/70 (88%)
Strand = Plus / Minus
Query: 346 accatgcagaacctcaacgaccgcctggcctcctacctggagaaggtgcgcgccttggag 405
||||||||||||||||| ||||||||||||||||||||||| | ||||| || |||||
Sbjct: 21799553 accatgcagaacctcaatgaccgcctggcctcctacctggaccatgtgcgtgctctggag 21799494
Query: 406 caggccaacg 415
|||||||||
Sbjct: 21799493 gaggccaacg 21799484
Score = 71.9 bits (36), Expect = 7e-10
Identities = 66/76 (86%)
Strand = Plus / Minus
Query: 966 cagatcagcaagacggaggtcaccgatctgcggcgcaccctccagggtctggagatcgag 1025
|||| ||||||||||||| |||| || || |||| || |||||||| ||||||||||||
Sbjct: 21477208 cagaccagcaagacggagatcacggagctcaggcgaacactccagggcctggagatcgag 21477149
Query: 1026 ctgcagtctcagctca 1041
|||||||| |||||||
Sbjct: 21477148 ctgcagtcccagctca 21477133
Score = 69.9 bits (35), Expect = 3e-09
Identities = 107/131 (81%)
Strand = Plus / Minus
Query: 630 gagcgtggaggccgacatcaacggcctgcgcagggtgctggacgagctgaccctggccag 689
||||||||| |||||||||||||||||||| | || |||||||| ||||| || | |
Sbjct: 22059210 gagcgtggaagccgacatcaacggcctgcggaaagtcctggacgacttgaccatgactcg 22059151
Query: 690 gaccgacctggagctgcagatcgaaggcctgaaggaagagctggcctacctgaagaagaa 749
| ||||| ||| ||||||| || |||| ||| |||||| ||||||||||||||||
Sbjct: 22059150 ctcggacctcgagatgcagatggagaacctggtggaggagctgacctacctgaagaagaa 22059091
Query: 750 ccacgaggagg 760
|||||||||||
Sbjct: 22059090 ccacgaggagg 22059080
Score = 65.9 bits (33), Expect = 4e-08
Identities = 69/81 (85%)
Strand = Plus / Minus
Query: 346 accatgcagaacctcaacgaccgcctggcctcctacctggagaaggtgcgcgccttggag 405
||||||||||||||||| |||||||||||| ||||| || ||||| | |||||||||
Sbjct: 22060713 accatgcagaacctcaatgaccgcctggccaattacctagacaaggtcagggccttggag 22060654
Query: 406 caggccaacggcgacctggag 426
||||||||| |||||||||
Sbjct: 22060653 gaggccaacgctgacctggag 22060633
Score = 61.9 bits (31), Expect = 7e-07
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 634 gtggaggccgacatcaacggcctgcgcagggtgctggacgagctgaccctg 684
|||||| | |||||||| |||||||||||| | ||||||||||||||||||
Sbjct: 21407848 gtggagtcagacatcaatggcctgcgcaggatcctggacgagctgaccctg 21407798
>Sscrofa_Chr05
|| Length = 111506441
Score = 63.9 bits (32), Expect = 2e-07
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 346 accatgcagaacctcaacgaccgcctggcctcctacctggagaaggtg 393
||||||||| |||| || ||||||||||||||||||||||||| ||||
Sbjct: 18726338 accatgcaggacctgaatgaccgcctggcctcctacctggagagggtg 18726385
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 20,836,529
Number of extensions: 180
Number of successful extensions: 180
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 33
Length of query: 1094
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1073
Effective length of database: 2,808,413,156
Effective search space: 3013427316388
Effective search space used: 3013427316388
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)