Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001872
(2075 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001073105.1| heat shock protein HSP 90-beta [Bos taurus]. 904 0.0
Alignment gi|NP_001012688.1| heat shock protein HSP 90-alpha [Bos taurus]. 829 0.0
Alignment gi|NP_777125.1| endoplasmin precursor [Bos taurus]. 278 2e-77
Alignment gi|NP_001033764.1| heat shock protein 75 kDa, mitochondrial pre... 173 5e-43
>ref|NP_001073105.1| heat shock protein HSP 90-beta [Bos taurus].
Length = 724
Score = 904 bits (2335), Expect(3) = 0.0
Identities = 469/538 (87%), Positives = 471/538 (87%)
Frame = +3
Query: 210 MPXXXXXXXXXXXTFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLT 389
MP TFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLT
Sbjct: 1 MPEEVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLT 60
Query: 390 DPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAG 569
DPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADL+NNLGTIAKSGTKAFMEALQAG
Sbjct: 61 DPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLVNNLGTIAKSGTKAFMEALQAG 120
Query: 570 ADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPIGRGTK 749
ADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPIGRGTK
Sbjct: 121 ADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPIGRGTK 180
Query: 750 VILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKXXXXXXXXXXXXXXXXXXXXX 929
VILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEK
Sbjct: 181 VILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKEREKEISDDEAEEEKGEKEEE 240
Query: 930 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYIDQEELNKTKPIWTRNPDDITQEE 1109
YIDQEELNKTKPIWTRNPDDITQEE
Sbjct: 241 DKDDEEKPKIEDVGSDEEDDSGKDKKKKTKKIKEKYIDQEELNKTKPIWTRNPDDITQEE 300
Query: 1110 YGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKKNNIKLYVRRV 1289
YGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKKNNIKLYVRRV
Sbjct: 301 YGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKKNNIKLYVRRV 360
Query: 1290 FIMDSCDELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNIVKKCLELFSELA 1469
FIMDSCDELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNIVKKCLELFSELA
Sbjct: 361 FIMDSCDELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNIVKKCLELFSELA 420
Query: 1470 EDKENYKKFYEAFSKNLKLGIHEDSTNRRRLSELLRYHTSQSGDEMTSLSEYVSRMKETQ 1649
EDKENYKKFYEAFSKNLKLGIHEDSTNRRRLSELLRYHTSQSGDEMTSLSEYVSRMKETQ
Sbjct: 421 EDKENYKKFYEAFSKNLKLGIHEDSTNRRRLSELLRYHTSQSGDEMTSLSEYVSRMKETQ 480
Query: 1650 KSIYYITGESKEQVANSAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTR 1823
KSIYYITGESKEQVANSAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFDGKSLVSVT+
Sbjct: 481 KSIYYITGESKEQVANSAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTK 538
Score = 65.5 bits (158), Expect(3) = 0.0
Identities = 32/39 (82%), Positives = 33/39 (84%)
Frame = +2
Query: 1892 NLCKLMKEILXIEVEKVTISXRLVSFTCCIVTSHYGWTA 2008
NLCKLMKEIL +VEKVTIS RLVS CCIVTS YGWTA
Sbjct: 562 NLCKLMKEILDKKVEKVTISNRLVSSPCCIVTSTYGWTA 600
Score = 29.3 bits (64), Expect(3) = 0.0
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +1
Query: 2005 SNMERIMKAQALRD 2046
+NMERIMKAQALRD
Sbjct: 600 ANMERIMKAQALRD 613
>ref|NP_001012688.1| heat shock protein HSP 90-alpha [Bos taurus].
Length = 733
Score = 829 bits (2142), Expect(3) = 0.0
Identities = 422/529 (79%), Positives = 452/529 (85%), Gaps = 4/529 (0%)
Frame = +3
Query: 249 TFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKI 428
TFAFQAEIAQLMSLIINTFYSNKEIFLRELISN+SDALDKIRYESLTDPSKLDSGKEL I
Sbjct: 19 TFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHI 78
Query: 429 DIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGF 608
++IPN Q+RTLT+VDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGF
Sbjct: 79 NLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGF 138
Query: 609 YSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPIGRGTKVILHLKEDQTEYL 788
YSAYLVAEKV VITKHNDDEQYAWESSAGGSFTVR D GEP+GRGTKVILHLKEDQTEYL
Sbjct: 139 YSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILHLKEDQTEYL 198
Query: 789 EERRVKEVVKKHSQFIGYPITLYL----EKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 956
EERR+KE+VKKHSQFIGYPITL++ +K
Sbjct: 199 EERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDEAEEKEDKEEEKEKEEKESDDKPEI 258
Query: 957 XXXXXXXXXXXXXXXXXXXXXXXXXXYIDQEELNKTKPIWTRNPDDITQEEYGEFYKSLT 1136
YIDQEELNKTKPIWTRNPDDIT EEYGEFYKSLT
Sbjct: 259 EDVGSDEEEEEKKDGDKKKKKKIKEKYIDQEELNKTKPIWTRNPDDITNEEYGEFYKSLT 318
Query: 1137 NDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKKNNIKLYVRRVFIMDSCDEL 1316
NDWEDHLAVKHFSVEGQLEFRALLF+PRRAPFDLFEN+KKKNNIKLYVRRVFIMD+C+EL
Sbjct: 319 NDWEDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFENRKKKNNIKLYVRRVFIMDNCEEL 378
Query: 1317 IPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNIVKKCLELFSELAEDKENYKKF 1496
IPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKN+VKKCLELF+ELAEDKENYKKF
Sbjct: 379 IPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNLVKKCLELFTELAEDKENYKKF 438
Query: 1497 YEAFSKNLKLGIHEDSTNRRRLSELLRYHTSQSGDEMTSLSEYVSRMKETQKSIYYITGE 1676
YE FSKN+KLGIHEDS NR++LSELLRY+TS SGDEM SL +Y +RMKE QK IYYITGE
Sbjct: 439 YEQFSKNIKLGIHEDSQNRKKLSELLRYYTSASGDEMVSLKDYCTRMKENQKHIYYITGE 498
Query: 1677 SKEQVANSAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTR 1823
+K+QVANSAFVER+RK G EV+YM EPIDEYCVQQLKEF+GK+LVSVT+
Sbjct: 499 TKDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTK 547
Score = 60.1 bits (144), Expect(3) = 0.0
Identities = 27/39 (69%), Positives = 32/39 (82%)
Frame = +2
Query: 1892 NLCKLMKEILXIEVEKVTISXRLVSFTCCIVTSHYGWTA 2008
NLCK+MK+IL +VEKV +S RLV+ CCIVTS YGWTA
Sbjct: 571 NLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTA 609
Score = 29.3 bits (64), Expect(3) = 0.0
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +1
Query: 2005 SNMERIMKAQALRD 2046
+NMERIMKAQALRD
Sbjct: 609 ANMERIMKAQALRD 622
>ref|NP_777125.1| endoplasmin precursor [Bos taurus].
Length = 804
Score = 278 bits (710), Expect(2) = 2e-77
Identities = 131/263 (49%), Positives = 192/263 (73%), Gaps = 2/263 (0%)
Frame = +3
Query: 1041 DQEELNKTKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPR 1220
D E +N KPIW R ++ ++EY FYKS + + +D +A HF+ EG++ F+++LF+P
Sbjct: 332 DWELMNDIKPIWQRPSKEVEEDEYKAFYKSFSKESDDPMAYIHFTAEGEVTFKSILFVPT 391
Query: 1221 RAPFDLFEN--KKKKNNIKLYVRRVFIMDSCDELIPEYLNFIRGVVDSEDLPLNISREML 1394
AP LF+ KK + IKLYVRRVFI D +++P+YLNF++GVVDS+DLPLN+SRE L
Sbjct: 392 SAPRGLFDEYGSKKSDYIKLYVRRVFITDDFHDMMPKYLNFVKGVVDSDDLPLNVSRETL 451
Query: 1395 QQSKILKVIRKNIVKKCLELFSELAEDKENYKKFYEAFSKNLKLGIHEDSTNRRRLSELL 1574
QQ K+LKVIRK +V+K L++ ++A++K N F++ F N+KLG+ ED +NR RL++LL
Sbjct: 452 QQHKLLKVIRKKLVRKTLDMIKKIADEKYN-DTFWKEFGTNIKLGVIEDHSNRTRLAKLL 510
Query: 1575 RYHTSQSGDEMTSLSEYVSRMKETQKSIYYITGESKEQVANSAFVERVRKRGFEVVYMTE 1754
R+ +S +MTSL +YV RMKE Q IY++ G S+++ +S FVER+ K+G+EV+Y+TE
Sbjct: 511 RFQSSHHPSDMTSLDQYVERMKEKQDKIYFMAGASRKEAESSPFVERLLKKGYEVIYLTE 570
Query: 1755 PIDEYCVQQLKEFDGKSLVSVTR 1823
P+DEYC+Q L EFDGK +V +
Sbjct: 571 PVDEYCIQALPEFDGKRFQNVAK 593
Score = 32.0 bits (71), Expect(2) = 2e-77
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 1928 EVEKVTISXRLVSFTCCIVTSHYGWTATWSAS*KLKHFGT 2047
++EK +S RL C +V S YGW+ K + + T
Sbjct: 630 KIEKAVVSQRLTESPCALVASQYGWSGNMERIMKAQAYQT 669
Score = 214 bits (545), Expect = 2e-55
Identities = 116/211 (54%), Positives = 153/211 (72%), Gaps = 6/211 (2%)
Frame = +3
Query: 252 FAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKID 431
FAFQAE+ ++M LIIN+ Y NKEIFLRELISNASDALDKIR SLTD + L +EL +
Sbjct: 76 FAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVK 135
Query: 432 IIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFM----EALQAGADIS-MIGQF 596
I + ++ L + DTG+GMT+ +L+ NLGTIAKSGT F+ EA + G S +IGQF
Sbjct: 136 IKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQF 195
Query: 597 GVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRAD-HGEPIGRGTKVILHLKED 773
GVGFYSA+LVA+KV+V +KHN+D Q+ WES + F+V AD G +GRGT + L LKE+
Sbjct: 196 GVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEFSVIADPRGNTLGRGTTITLVLKEE 254
Query: 774 QTEYLEERRVKEVVKKHSQFIGYPITLYLEK 866
++YLE +K +VKK+SQFI +PI ++ K
Sbjct: 255 ASDYLELDTIKNLVKKYSQFINFPIYVWSSK 285
>ref|NP_001033764.1| heat shock protein 75 kDa, mitochondrial precursor [Bos taurus].
Length = 703
Score = 173 bits (439), Expect = 5e-43
Identities = 91/203 (44%), Positives = 139/203 (68%), Gaps = 4/203 (1%)
Frame = +3
Query: 258 FQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDII 437
FQAE +L+ ++ + YS KE+F+RELISNASDAL+K+R++ +++ L +++I +
Sbjct: 89 FQAETKKLLDIVARSLYSEKEVFIRELISNASDALEKLRHKLVSEGQALP---DMEIHLQ 145
Query: 438 PNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQ--AGADISMIGQFGVGFY 611
+ T+T+ DTG+GM++ +L++NLGTIA+SG+KAF++ALQ A A +IGQFGVGFY
Sbjct: 146 TDADRGTITIQDTGVGMSREELVSNLGTIARSGSKAFLDALQNQAEAGSKIIGQFGVGFY 205
Query: 612 SAYLVAEKVVVITKHNDDEQ--YAWESSAGGSFTVRADHGEPIGRGTKVILHLKEDQTEY 785
SA++VA++V V ++ D Y W S G F V G + GTK+I+HLK D E+
Sbjct: 206 SAFMVADRVEVYSRSVDAGSLGYRWLSDGSGVFEVAEASG--VRTGTKIIIHLKADSREF 263
Query: 786 LEERRVKEVVKKHSQFIGYPITL 854
E RV++VV K+S F+ +P+ L
Sbjct: 264 ASEARVRDVVTKYSNFVSFPLYL 286
Score = 158 bits (400), Expect = 2e-38
Identities = 78/265 (29%), Positives = 156/265 (58%), Gaps = 4/265 (1%)
Frame = +3
Query: 1035 YIDQEELNKTKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFI 1214
Y++ +N + IW +P D+ + ++ EFY+ + + H+ + L R++ ++
Sbjct: 285 YLNGRRMNTLQAIWMMDPKDVGEGQHEEFYRYVAQAHDRPRYTLHYRTDAPLSIRSIFYV 344
Query: 1215 PRRAPFDLFENKKKKNNIKLYVRRVFIMDSCDELIPEYLNFIRGVVDSEDLPLNISREML 1394
P P +++ +++ LY R+V I ++P +L F+RGVVDSED+PLN+SRE+L
Sbjct: 345 PDAKPSMFDVSRELGSSVSLYSRKVLIQTKATNILPTWLRFVRGVVDSEDIPLNLSRELL 404
Query: 1395 QQSKILKVIRKNIVKKCLELFSELA-EDKENYKKFYEAFSKNLKLGI--HEDSTNRRRLS 1565
Q+S +++ ++ + ++ ++ F++ + +D E Y +F+E + ++ GI + + ++
Sbjct: 405 QESALIRKLQGVLQQRLIKFFTDQSKKDAEKYARFFEDYGLFVREGIVTTAEQEVKEDIA 464
Query: 1566 ELLRYHTSQ-SGDEMTSLSEYVSRMKETQKSIYYITGESKEQVANSAFVERVRKRGFEVV 1742
+LLRY +S ++TSLS+Y SRM+ ++IYY+ ++ +S + E ++++ EV+
Sbjct: 465 KLLRYESSALPAGQLTSLSDYASRMQAGTRNIYYLCAPNRHLAEHSPYYEAMKRKNTEVL 524
Query: 1743 YMTEPIDEYCVQQLKEFDGKSLVSV 1817
+ E DE + L+EFD K L+SV
Sbjct: 525 FCYEQFDELTLLHLREFDKKKLISV 549
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 71,741,515
Number of extensions: 1902054
Number of successful extensions: 5834
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5819
Number of HSP's successfully gapped: 13
Length of query: 691
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 582
Effective length of database: 14,074,782
Effective search space: 8191523124
Effective search space used: 8191523124
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001872
(2075 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532154.2| PREDICTED: similar to heat shock protein 1, bet... 711 0.0
Alignment gi|XP_537557.2| PREDICTED: similar to heat shock protein 1, alp... 651 0.0
Alignment gi|XP_868588.1| PREDICTED: similar to heat shock protein 1, alp... 651 0.0
Alignment gi|XP_848783.1| PREDICTED: similar to heat shock protein 1, alp... 634 0.0
Alignment gi|XP_850113.1| PREDICTED: similar to heat shock protein 1, bet... 439 e-137
Alignment gi|XP_866000.1| PREDICTED: similar to heat shock protein 1, bet... 478 e-134
Alignment gi|XP_850290.1| PREDICTED: similar to heat shock protein 1, bet... 439 e-124
Alignment gi|XP_857137.1| PREDICTED: similar to Heat shock protein HSP 90... 378 e-104
Alignment gi|XP_854921.1| PREDICTED: similar to heat shock protein 1, bet... 345 1e-94
Alignment gi|XP_544195.2| PREDICTED: similar to heat shock protein 1, bet... 340 2e-93
>ref|XP_532154.2| PREDICTED: similar to heat shock protein 1, beta isoform 1 [Canis
familiaris].
Length = 636
Score = 711 bits (1835), Expect = 0.0
Identities = 371/438 (84%), Positives = 371/438 (84%)
Frame = +3
Query: 210 MPXXXXXXXXXXXTFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLT 389
MP TFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLT
Sbjct: 1 MPEEVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLT 60
Query: 390 DPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAG 569
DPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAG
Sbjct: 61 DPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAG 120
Query: 570 ADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPIGRGTK 749
ADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPIGRGTK
Sbjct: 121 ADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPIGRGTK 180
Query: 750 VILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKXXXXXXXXXXXXXXXXXXXXX 929
VILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEK
Sbjct: 181 VILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKEREKEISDDEAEEEKGEKEEE 240
Query: 930 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYIDQEELNKTKPIWTRNPDDITQEE 1109
YIDQEELNKTKPIWTRNPDDITQEE
Sbjct: 241 DKDDEEKPKIEDVGSDEEDDSGKDKKKKTKKIKEKYIDQEELNKTKPIWTRNPDDITQEE 300
Query: 1110 YGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKKNNIKLYVRRV 1289
YGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKKNNIKLYVRRV
Sbjct: 301 YGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKKNNIKLYVRRV 360
Query: 1290 FIMDSCDELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNIVKKCLELFSELA 1469
FIMDSCDELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNIVKKCLELFSELA
Sbjct: 361 FIMDSCDELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNIVKKCLELFSELA 420
Query: 1470 EDKENYKKFYEAFSKNLK 1523
EDKENYKKFYEAFSKNLK
Sbjct: 421 EDKENYKKFYEAFSKNLK 438
Score = 65.5 bits (158), Expect(3) = 4e-16
Identities = 32/39 (82%), Positives = 33/39 (84%)
Frame = +2
Query: 1892 NLCKLMKEILXIEVEKVTISXRLVSFTCCIVTSHYGWTA 2008
NLCKLMKEIL +VEKVTIS RLVS CCIVTS YGWTA
Sbjct: 474 NLCKLMKEILDKKVEKVTISNRLVSSPCCIVTSTYGWTA 512
Score = 29.6 bits (65), Expect(3) = 4e-16
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = +3
Query: 1776 QQLKEFDGKSLVSVTR 1823
+ LKEFDGKSLVSVT+
Sbjct: 435 KNLKEFDGKSLVSVTK 450
Score = 29.3 bits (64), Expect(3) = 4e-16
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +1
Query: 2005 SNMERIMKAQALRD 2046
+NMERIMKAQALRD
Sbjct: 512 ANMERIMKAQALRD 525
>ref|XP_537557.2| PREDICTED: similar to heat shock protein 1, alpha isoform 1 [Canis
familiaris].
Length = 615
Score = 651 bits (1679), Expect(3) = 0.0
Identities = 329/429 (76%), Positives = 354/429 (82%), Gaps = 4/429 (0%)
Frame = +3
Query: 549 MEALQAGADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGE 728
MEALQAGADISMIGQFGVGFYSAYLVAEKV VITKHNDDEQYAWESSAGGSFTVR D GE
Sbjct: 1 MEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGE 60
Query: 729 PIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYL----EKXXXXXXXXXX 896
P+GRGTKVILHLKEDQTEYLEERR+KE+VKKHSQFIGYPITL++ +K
Sbjct: 61 PMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDEAEEK 120
Query: 897 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYIDQEELNKTKPIW 1076
YIDQEELNKTKPIW
Sbjct: 121 EEKEEEKEKKEKESDDKPEIEDVGSDEEEEEKKDGDKKKKKKIKEKYIDQEELNKTKPIW 180
Query: 1077 TRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKK 1256
TRNPDDIT EEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLF+PRRAPFDLFEN+KK
Sbjct: 181 TRNPDDITNEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFENRKK 240
Query: 1257 KNNIKLYVRRVFIMDSCDELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNIV 1436
KNNIKLYVRRVFIMD+C+ELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKN+V
Sbjct: 241 KNNIKLYVRRVFIMDNCEELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNLV 300
Query: 1437 KKCLELFSELAEDKENYKKFYEAFSKNLKLGIHEDSTNRRRLSELLRYHTSQSGDEMTSL 1616
KKCLELF+ELAEDKENYKKFYE FSKN+KLGIHEDS NR++LSELLRY+TS SGDEM SL
Sbjct: 301 KKCLELFTELAEDKENYKKFYEQFSKNIKLGIHEDSQNRKKLSELLRYYTSASGDEMVSL 360
Query: 1617 SEYVSRMKETQKSIYYITGESKEQVANSAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFD 1796
+Y +RMKE QK IYYITGE+K+QVANSAFVER+RK G EV+YM EPIDEYCVQQLKEF+
Sbjct: 361 KDYCTRMKENQKHIYYITGETKDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFE 420
Query: 1797 GKSLVSVTR 1823
GK+LVSVT+
Sbjct: 421 GKTLVSVTK 429
Score = 60.1 bits (144), Expect(3) = 0.0
Identities = 27/39 (69%), Positives = 32/39 (82%)
Frame = +2
Query: 1892 NLCKLMKEILXIEVEKVTISXRLVSFTCCIVTSHYGWTA 2008
NLCK+MK+IL +VEKV +S RLV+ CCIVTS YGWTA
Sbjct: 453 NLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTA 491
Score = 29.3 bits (64), Expect(3) = 0.0
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +1
Query: 2005 SNMERIMKAQALRD 2046
+NMERIMKAQALRD
Sbjct: 491 ANMERIMKAQALRD 504
>ref|XP_868588.1| PREDICTED: similar to heat shock protein 1, alpha isoform 3 [Canis
familiaris].
Length = 607
Score = 651 bits (1679), Expect(3) = 0.0
Identities = 329/429 (76%), Positives = 354/429 (82%), Gaps = 4/429 (0%)
Frame = +3
Query: 549 MEALQAGADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGE 728
MEALQAGADISMIGQFGVGFYSAYLVAEKV VITKHNDDEQYAWESSAGGSFTVR D GE
Sbjct: 1 MEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGE 60
Query: 729 PIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYL----EKXXXXXXXXXX 896
P+GRGTKVILHLKEDQTEYLEERR+KE+VKKHSQFIGYPITL++ +K
Sbjct: 61 PMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDEAEEK 120
Query: 897 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYIDQEELNKTKPIW 1076
YIDQEELNKTKPIW
Sbjct: 121 EEKEEEKEKKEKESDDKPEIEDVGSDEEEEEKKDGDKKKKKKIKEKYIDQEELNKTKPIW 180
Query: 1077 TRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKK 1256
TRNPDDIT EEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLF+PRRAPFDLFEN+KK
Sbjct: 181 TRNPDDITNEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFENRKK 240
Query: 1257 KNNIKLYVRRVFIMDSCDELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNIV 1436
KNNIKLYVRRVFIMD+C+ELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKN+V
Sbjct: 241 KNNIKLYVRRVFIMDNCEELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNLV 300
Query: 1437 KKCLELFSELAEDKENYKKFYEAFSKNLKLGIHEDSTNRRRLSELLRYHTSQSGDEMTSL 1616
KKCLELF+ELAEDKENYKKFYE FSKN+KLGIHEDS NR++LSELLRY+TS SGDEM SL
Sbjct: 301 KKCLELFTELAEDKENYKKFYEQFSKNIKLGIHEDSQNRKKLSELLRYYTSASGDEMVSL 360
Query: 1617 SEYVSRMKETQKSIYYITGESKEQVANSAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFD 1796
+Y +RMKE QK IYYITGE+K+QVANSAFVER+RK G EV+YM EPIDEYCVQQLKEF+
Sbjct: 361 KDYCTRMKENQKHIYYITGETKDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFE 420
Query: 1797 GKSLVSVTR 1823
GK+LVSVT+
Sbjct: 421 GKTLVSVTK 429
Score = 60.1 bits (144), Expect(3) = 0.0
Identities = 27/39 (69%), Positives = 32/39 (82%)
Frame = +2
Query: 1892 NLCKLMKEILXIEVEKVTISXRLVSFTCCIVTSHYGWTA 2008
NLCK+MK+IL +VEKV +S RLV+ CCIVTS YGWTA
Sbjct: 453 NLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTA 491
Score = 29.3 bits (64), Expect(3) = 0.0
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +1
Query: 2005 SNMERIMKAQALRD 2046
+NMERIMKAQALRD
Sbjct: 491 ANMERIMKAQALRD 504
>ref|XP_848783.1| PREDICTED: similar to heat shock protein 1, alpha isoform 1 [Canis
familiaris].
Length = 483
Score = 634 bits (1634), Expect = 0.0
Identities = 326/414 (78%), Positives = 346/414 (83%), Gaps = 4/414 (0%)
Frame = +3
Query: 249 TFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKI 428
TFAFQAEIAQLMSLIINTFYSNKEIFLRELISN+SDALDKIRYESLTDPSKLDSGKEL I
Sbjct: 19 TFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHI 78
Query: 429 DIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGF 608
++IPN Q+RTLT+VDTGIGMTKADLINNLGTIAKSGTK FMEALQAGADISMIGQFGVGF
Sbjct: 79 NLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKVFMEALQAGADISMIGQFGVGF 138
Query: 609 YSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPIGRGTKVILHLKEDQTEYL 788
YSAYLVAEKV VITKHNDD+QYAWESSAGGSFTVR D GEP+GRGTKVILHLKEDQTEYL
Sbjct: 139 YSAYLVAEKVTVITKHNDDKQYAWESSAGGSFTVRTDTGEPMGRGTKVILHLKEDQTEYL 198
Query: 789 EERRVKEVVKKHSQFIGYPITLYL----EKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 956
EERR+KE+VKKHSQFIGYPITL++ +K
Sbjct: 199 EERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDEAEEKEEKEEEKEKEEKESDDKPEI 258
Query: 957 XXXXXXXXXXXXXXXXXXXXXXXXXXYIDQEELNKTKPIWTRNPDDITQEEYGEFYKSLT 1136
YIDQEELNKTKPIWTRNPD+IT EEYGEFYKSLT
Sbjct: 259 EDVGSDEEEEEKKDGDKKKKKKIKEKYIDQEELNKTKPIWTRNPDNITNEEYGEFYKSLT 318
Query: 1137 NDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKKNNIKLYVRRVFIMDSCDEL 1316
NDWEDHLAVKHFSVEGQLEFR LLF+PRRAPFDLFEN+KKKNNIKLYVRRVFIMD+C+EL
Sbjct: 319 NDWEDHLAVKHFSVEGQLEFRDLLFVPRRAPFDLFENRKKKNNIKLYVRRVFIMDNCEEL 378
Query: 1317 IPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNIVKKCLELFSELAEDK 1478
IPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKN+VKKCLELF+ELAED+
Sbjct: 379 IPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNLVKKCLELFTELAEDR 432
>ref|XP_850113.1| PREDICTED: similar to heat shock protein 1, beta [Canis familiaris].
Length = 460
Score = 439 bits (1128), Expect(3) = e-137
Identities = 228/263 (86%), Positives = 234/263 (88%)
Frame = +3
Query: 1035 YIDQEELNKTKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFI 1214
YIDQEELNKTKP+WTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFR LL +
Sbjct: 7 YIDQEELNKTKPVWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRVLLIV 66
Query: 1215 PRRAPFDLFENKKKKNNIKLYVRRVFIMDSCDELIPEYLNFIRGVVDSEDLPLNISREML 1394
P APFDLFENKKKKN IKLYVR VFIMD CDELIPEYLNFIRGVVDSEDLPLNISREML
Sbjct: 67 PHWAPFDLFENKKKKN-IKLYVRHVFIMDGCDELIPEYLNFIRGVVDSEDLPLNISREML 125
Query: 1395 QQSKILKVIRKNIVKKCLELFSELAEDKENYKKFYEAFSKNLKLGIHEDSTNRRRLSELL 1574
QQSKILKVI KNIVKKCLELFSELAEDKENYKKF EAFSKNLKL IHEDSTN+R LSELL
Sbjct: 126 QQSKILKVICKNIVKKCLELFSELAEDKENYKKFCEAFSKNLKLRIHEDSTNQRCLSELL 185
Query: 1575 RYHTSQSGDEMTSLSEYVSRMKETQKSIYYITGESKEQVANSAFVERVRKRGFEVVYMTE 1754
YHTSQSGDEMTSLSEYVS MKETQKSIYYITG+ KEQVANSAFVE+VRK GFE
Sbjct: 186 CYHTSQSGDEMTSLSEYVSHMKETQKSIYYITGKCKEQVANSAFVEQVRKWGFE------ 239
Query: 1755 PIDEYCVQQLKEFDGKSLVSVTR 1823
QLKEFDGKSLVSVT+
Sbjct: 240 --------QLKEFDGKSLVSVTK 254
Score = 65.5 bits (158), Expect(3) = e-137
Identities = 32/39 (82%), Positives = 33/39 (84%)
Frame = +2
Query: 1892 NLCKLMKEILXIEVEKVTISXRLVSFTCCIVTSHYGWTA 2008
NLCKLMKEIL +VEKVTIS RLVS CCIVTS YGWTA
Sbjct: 278 NLCKLMKEILDKKVEKVTISNRLVSSPCCIVTSTYGWTA 316
Score = 26.2 bits (56), Expect(3) = e-137
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +1
Query: 2005 SNMERIMKAQALRD 2046
+NMERIMKAQAL D
Sbjct: 316 ANMERIMKAQALWD 329
>ref|XP_866000.1| PREDICTED: similar to heat shock protein 1, beta isoform 3 [Canis
familiaris].
Length = 324
Score = 478 bits (1229), Expect = e-134
Identities = 252/319 (78%), Positives = 252/319 (78%)
Frame = +3
Query: 210 MPXXXXXXXXXXXTFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLT 389
MP TFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLT
Sbjct: 1 MPEEVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLT 60
Query: 390 DPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAG 569
DPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAG
Sbjct: 61 DPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAG 120
Query: 570 ADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPIGRGTK 749
ADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPIGRGTK
Sbjct: 121 ADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPIGRGTK 180
Query: 750 VILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKXXXXXXXXXXXXXXXXXXXXX 929
VILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEK
Sbjct: 181 VILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKEREKEISDDEAEEEKGEKEEE 240
Query: 930 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYIDQEELNKTKPIWTRNPDDITQEE 1109
YIDQEELNKTKPIWTRNPDDITQEE
Sbjct: 241 DKDDEEKPKIEDVGSDEEDDSGKDKKKKTKKIKEKYIDQEELNKTKPIWTRNPDDITQEE 300
Query: 1110 YGEFYKSLTNDWEDHLAVK 1166
YGEFYKSLTNDWEDHLAVK
Sbjct: 301 YGEFYKSLTNDWEDHLAVK 319
>ref|XP_850290.1| PREDICTED: similar to heat shock protein 1, beta [Canis familiaris].
Length = 369
Score = 439 bits (1128), Expect(2) = e-124
Identities = 223/254 (87%), Positives = 233/254 (91%)
Frame = +3
Query: 1062 TKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLF 1241
TKPIWTRNPDDITQEEYG FYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIP RA
Sbjct: 79 TKPIWTRNPDDITQEEYGVFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPHRALLTSL 138
Query: 1242 ENKKKKNNIKLYVRRVFIMDSCDELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVI 1421
+ ++K+ + YVR VFIMDS DELIPEYLNFI GVVDSEDLPLNISREMLQQSKILKVI
Sbjct: 139 KTRRKRTSN--YVRCVFIMDSGDELIPEYLNFIHGVVDSEDLPLNISREMLQQSKILKVI 196
Query: 1422 RKNIVKKCLELFSELAEDKENYKKFYEAFSKNLKLGIHEDSTNRRRLSELLRYHTSQSGD 1601
KNIVKKCLELFSELAEDKENYKKFYE FSKNLKLGIHEDSTNR RLSELLRYHTSQSGD
Sbjct: 197 HKNIVKKCLELFSELAEDKENYKKFYEVFSKNLKLGIHEDSTNRCRLSELLRYHTSQSGD 256
Query: 1602 EMTSLSEYVSRMKETQKSIYYITGESKEQVANSAFVERVRKRGFEVVYMTEPIDEYCVQQ 1781
EMTSLSEYV MKETQKSIYYITGE+K+QVANSAFVERVRKRGFEVVY TEPI+EYC+QQ
Sbjct: 257 EMTSLSEYVCHMKETQKSIYYITGETKQQVANSAFVERVRKRGFEVVYTTEPINEYCMQQ 316
Query: 1782 LKEFDGKSLVSVTR 1823
LKEFDGKSLVSVT+
Sbjct: 317 LKEFDGKSLVSVTK 330
Score = 27.3 bits (59), Expect(2) = e-124
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +2
Query: 1892 NLCKLMKEILXIEVEK 1939
NLCKLMKEIL +VE+
Sbjct: 354 NLCKLMKEILDKKVER 369
Score = 143 bits (360), Expect = 7e-34
Identities = 73/77 (94%), Positives = 74/77 (96%)
Frame = +3
Query: 486 MTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVVVITKHNDD 665
MTKADLINNL TIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVA+KVVVITKHN D
Sbjct: 1 MTKADLINNLRTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVVVITKHNVD 60
Query: 666 EQYAWESSAGGSFTVRA 716
EQYAWESSAGGSFTV A
Sbjct: 61 EQYAWESSAGGSFTVLA 77
>ref|XP_857137.1| PREDICTED: similar to Heat shock protein HSP 90-alpha (HSP 86)
isoform 3 [Canis familiaris].
Length = 543
Score = 378 bits (971), Expect = e-104
Identities = 189/206 (91%), Positives = 200/206 (97%)
Frame = +3
Query: 249 TFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKI 428
TFAFQAEIAQLMSLIINTFYSNKEIFLRELISN+SDALDKIRYESLTDPSKLDSGKEL I
Sbjct: 19 TFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHI 78
Query: 429 DIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGF 608
++IPN Q+RTLT+VDTGIGMTKADLINNLGTIAKSGTK FMEALQAGADISMIGQFGVGF
Sbjct: 79 NLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKVFMEALQAGADISMIGQFGVGF 138
Query: 609 YSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPIGRGTKVILHLKEDQTEYL 788
YSAYLVAEKV VITKHNDD+QYAWESSAGGSFTVR D GEP+GRGTKVILHLKEDQTEYL
Sbjct: 139 YSAYLVAEKVTVITKHNDDKQYAWESSAGGSFTVRTDTGEPMGRGTKVILHLKEDQTEYL 198
Query: 789 EERRVKEVVKKHSQFIGYPITLYLEK 866
EERR+KE+VKKHSQFIGYPITL++EK
Sbjct: 199 EERRIKEIVKKHSQFIGYPITLFVEK 224
Score = 191 bits (484), Expect(3) = 3e-62
Identities = 90/119 (75%), Positives = 106/119 (89%)
Frame = +3
Query: 1467 AEDKENYKKFYEAFSKNLKLGIHEDSTNRRRLSELLRYHTSQSGDEMTSLSEYVSRMKET 1646
++DK YKKFY+ FSKN+KLGIHEDS NR++LSELLRY+TS SGDEM SL +Y +RMKE
Sbjct: 252 SDDKPEYKKFYKQFSKNIKLGIHEDSQNRKKLSELLRYYTSASGDEMVSLKDYCTRMKEN 311
Query: 1647 QKSIYYITGESKEQVANSAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTR 1823
QK IYYITGE+K+QVANSAFVER+RK G EV+YM EPIDEYCVQQLKEF+GK+LVSVT+
Sbjct: 312 QKHIYYITGETKDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTK 370
Score = 60.1 bits (144), Expect(3) = 3e-62
Identities = 27/39 (69%), Positives = 32/39 (82%)
Frame = +2
Query: 1892 NLCKLMKEILXIEVEKVTISXRLVSFTCCIVTSHYGWTA 2008
NLCK+MK+IL +VEKV +S RLV+ CCIVTS YGWTA
Sbjct: 394 NLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTA 432
Score = 29.3 bits (64), Expect(3) = 3e-62
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +1
Query: 2005 SNMERIMKAQALRD 2046
+NMERIMKAQALRD
Sbjct: 432 ANMERIMKAQALRD 445
>ref|XP_854921.1| PREDICTED: similar to heat shock protein 1, beta [Canis familiaris].
Length = 291
Score = 345 bits (885), Expect = 1e-94
Identities = 169/170 (99%), Positives = 169/170 (99%)
Frame = +3
Query: 1035 YIDQEELNKTKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFI 1214
YIDQEELNKTKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFI
Sbjct: 120 YIDQEELNKTKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFI 179
Query: 1215 PRRAPFDLFENKKKKNNIKLYVRRVFIMDSCDELIPEYLNFIRGVVDSEDLPLNISREML 1394
PRRAPFDLFENKKKKNNIKLYVRRVFIMDSCDELIPEYLNFIRGVVDSEDLPLNISREML
Sbjct: 180 PRRAPFDLFENKKKKNNIKLYVRRVFIMDSCDELIPEYLNFIRGVVDSEDLPLNISREML 239
Query: 1395 QQSKILKVIRKNIVKKCLELFSELAEDKENYKKFYEAFSKNLKLGIHEDS 1544
QQSKI KVIRKNIVKKCLELFSELAEDKENYKKFYEAFSKNLKLGIHEDS
Sbjct: 240 QQSKIFKVIRKNIVKKCLELFSELAEDKENYKKFYEAFSKNLKLGIHEDS 289
Score = 195 bits (495), Expect = 2e-49
Identities = 95/95 (100%), Positives = 95/95 (100%)
Frame = +3
Query: 582 MIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPIGRGTKVILH 761
MIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPIGRGTKVILH
Sbjct: 1 MIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPIGRGTKVILH 60
Query: 762 LKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEK 866
LKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEK
Sbjct: 61 LKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEK 95
>ref|XP_544195.2| PREDICTED: similar to heat shock protein 1, beta [Canis familiaris].
Length = 274
Score = 340 bits (873), Expect = 2e-93
Identities = 181/248 (72%), Positives = 190/248 (76%)
Frame = +3
Query: 1080 RNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKK 1259
+NP+D TQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIP PFDLFENKK+K
Sbjct: 41 QNPEDTTQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPCWDPFDLFENKKEK 100
Query: 1260 NNIKLYVRRVFIMDSCDELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNIVK 1439
NN KLYV FIMDSCDELI EY LN RE
Sbjct: 101 NNFKLYVHHGFIMDSCDELISEY--------------LNFIRE----------------- 129
Query: 1440 KCLELFSELAEDKENYKKFYEAFSKNLKLGIHEDSTNRRRLSELLRYHTSQSGDEMTSLS 1619
DKENYKKFYEAFS+NLKLGIHEDSTNR RLSELL YHT QSGDE+TSLS
Sbjct: 130 -----------DKENYKKFYEAFSENLKLGIHEDSTNRCRLSELLCYHTFQSGDEITSLS 178
Query: 1620 EYVSRMKETQKSIYYITGESKEQVANSAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFDG 1799
EYVS MKETQKSIYYITGESKEQVANSAFVERV+KRGFEV+YM EPIDEYCVQQLKEFDG
Sbjct: 179 EYVSHMKETQKSIYYITGESKEQVANSAFVERVQKRGFEVLYMIEPIDEYCVQQLKEFDG 238
Query: 1800 KSLVSVTR 1823
KS+VSVT+
Sbjct: 239 KSIVSVTK 246
Score = 79.3 bits (194), Expect = 1e-14
Identities = 39/41 (95%), Positives = 40/41 (97%)
Frame = +3
Query: 549 MEALQAGADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQ 671
MEALQAGADISMIGQFGVGFY AYLVAEKVVVITKHN+DEQ
Sbjct: 1 MEALQAGADISMIGQFGVGFYFAYLVAEKVVVITKHNNDEQ 41
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 75,021,108
Number of extensions: 1969065
Number of successful extensions: 6037
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 6021
Number of HSP's successfully gapped: 63
Length of query: 691
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 581
Effective length of database: 15,207,544
Effective search space: 8835583064
Effective search space used: 8835583064
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001872
(2075 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031381.2| heat shock protein HSP 90-beta [Homo sapiens]. 904 0.0
Alignment gi|NP_001017963.2| heat shock protein HSP 90-alpha isoform 1 [H... 481 e-149
Alignment gi|NP_005339.3| heat shock protein HSP 90-alpha isoform 2 [Homo... 481 e-149
Alignment gi|NP_003290.1| endoplasmin precursor [Homo sapiens]. 278 2e-77
Alignment gi|NP_057376.2| heat shock protein 75 kDa, mitochondrial precur... 177 3e-44
>ref|NP_031381.2| heat shock protein HSP 90-beta [Homo sapiens].
Length = 724
Score = 904 bits (2336), Expect(3) = 0.0
Identities = 470/538 (87%), Positives = 471/538 (87%)
Frame = +3
Query: 210 MPXXXXXXXXXXXTFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLT 389
MP TFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLT
Sbjct: 1 MPEEVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLT 60
Query: 390 DPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAG 569
DPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAG
Sbjct: 61 DPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAG 120
Query: 570 ADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPIGRGTK 749
ADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPIGRGTK
Sbjct: 121 ADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPIGRGTK 180
Query: 750 VILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKXXXXXXXXXXXXXXXXXXXXX 929
VILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEK
Sbjct: 181 VILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKEREKEISDDEAEEEKGEKEEE 240
Query: 930 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYIDQEELNKTKPIWTRNPDDITQEE 1109
YIDQEELNKTKPIWTRNPDDITQEE
Sbjct: 241 DKDDEEKPKIEDVGSDEEDDSGKDKKKKTKKIKEKYIDQEELNKTKPIWTRNPDDITQEE 300
Query: 1110 YGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKKNNIKLYVRRV 1289
YGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKKNNIKLYVRRV
Sbjct: 301 YGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKKNNIKLYVRRV 360
Query: 1290 FIMDSCDELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNIVKKCLELFSELA 1469
FIMDSCDELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNIVKKCLELFSELA
Sbjct: 361 FIMDSCDELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNIVKKCLELFSELA 420
Query: 1470 EDKENYKKFYEAFSKNLKLGIHEDSTNRRRLSELLRYHTSQSGDEMTSLSEYVSRMKETQ 1649
EDKENYKKFYEAFSKNLKLGIHEDSTNRRRLSELLRYHTSQSGDEMTSLSEYVSRMKETQ
Sbjct: 421 EDKENYKKFYEAFSKNLKLGIHEDSTNRRRLSELLRYHTSQSGDEMTSLSEYVSRMKETQ 480
Query: 1650 KSIYYITGESKEQVANSAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTR 1823
KSIYYITGESKEQVANSAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFDGKSLVSVT+
Sbjct: 481 KSIYYITGESKEQVANSAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTK 538
Score = 65.5 bits (158), Expect(3) = 0.0
Identities = 32/39 (82%), Positives = 33/39 (84%)
Frame = +2
Query: 1892 NLCKLMKEILXIEVEKVTISXRLVSFTCCIVTSHYGWTA 2008
NLCKLMKEIL +VEKVTIS RLVS CCIVTS YGWTA
Sbjct: 562 NLCKLMKEILDKKVEKVTISNRLVSSPCCIVTSTYGWTA 600
Score = 29.3 bits (64), Expect(3) = 0.0
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +1
Query: 2005 SNMERIMKAQALRD 2046
+NMERIMKAQALRD
Sbjct: 600 ANMERIMKAQALRD 613
>ref|NP_001017963.2| heat shock protein HSP 90-alpha isoform 1 [Homo sapiens].
Length = 854
Score = 481 bits (1237), Expect(3) = e-149
Identities = 232/263 (88%), Positives = 251/263 (95%)
Frame = +3
Query: 1035 YIDQEELNKTKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFI 1214
YIDQEELNKTKPIWTRNPDDIT EEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLF+
Sbjct: 406 YIDQEELNKTKPIWTRNPDDITNEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFV 465
Query: 1215 PRRAPFDLFENKKKKNNIKLYVRRVFIMDSCDELIPEYLNFIRGVVDSEDLPLNISREML 1394
PRRAPFDLFEN+KKKNNIKLYVRRVFIMD+C+ELIPEYLNFIRGVVDSEDLPLNISREML
Sbjct: 466 PRRAPFDLFENRKKKNNIKLYVRRVFIMDNCEELIPEYLNFIRGVVDSEDLPLNISREML 525
Query: 1395 QQSKILKVIRKNIVKKCLELFSELAEDKENYKKFYEAFSKNLKLGIHEDSTNRRRLSELL 1574
QQSKILKVIRKN+VKKCLELF+ELAEDKENYKKFYE FSKN+KLGIHEDS NR++LSELL
Sbjct: 526 QQSKILKVIRKNLVKKCLELFTELAEDKENYKKFYEQFSKNIKLGIHEDSQNRKKLSELL 585
Query: 1575 RYHTSQSGDEMTSLSEYVSRMKETQKSIYYITGESKEQVANSAFVERVRKRGFEVVYMTE 1754
RY+TS SGDEM SL +Y +RMKE QK IYYITGE+K+QVANSAFVER+RK G EV+YM E
Sbjct: 586 RYYTSASGDEMVSLKDYCTRMKENQKHIYYITGETKDQVANSAFVERLRKHGLEVIYMIE 645
Query: 1755 PIDEYCVQQLKEFDGKSLVSVTR 1823
PIDEYCVQQLKEF+GK+LVSVT+
Sbjct: 646 PIDEYCVQQLKEFEGKTLVSVTK 668
Score = 60.1 bits (144), Expect(3) = e-149
Identities = 27/39 (69%), Positives = 32/39 (82%)
Frame = +2
Query: 1892 NLCKLMKEILXIEVEKVTISXRLVSFTCCIVTSHYGWTA 2008
NLCK+MK+IL +VEKV +S RLV+ CCIVTS YGWTA
Sbjct: 692 NLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTA 730
Score = 29.3 bits (64), Expect(3) = e-149
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +1
Query: 2005 SNMERIMKAQALRD 2046
+NMERIMKAQALRD
Sbjct: 730 ANMERIMKAQALRD 743
Score = 381 bits (979), Expect = e-105
Identities = 191/206 (92%), Positives = 201/206 (97%)
Frame = +3
Query: 249 TFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKI 428
TFAFQAEIAQLMSLIINTFYSNKEIFLRELISN+SDALDKIRYESLTDPSKLDSGKEL I
Sbjct: 141 TFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHI 200
Query: 429 DIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGF 608
++IPN Q+RTLT+VDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGF
Sbjct: 201 NLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGF 260
Query: 609 YSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPIGRGTKVILHLKEDQTEYL 788
YSAYLVAEKV VITKHNDDEQYAWESSAGGSFTVR D GEP+GRGTKVILHLKEDQTEYL
Sbjct: 261 YSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILHLKEDQTEYL 320
Query: 789 EERRVKEVVKKHSQFIGYPITLYLEK 866
EERR+KE+VKKHSQFIGYPITL++EK
Sbjct: 321 EERRIKEIVKKHSQFIGYPITLFVEK 346
>ref|NP_005339.3| heat shock protein HSP 90-alpha isoform 2 [Homo sapiens].
Length = 732
Score = 481 bits (1237), Expect(3) = e-149
Identities = 232/263 (88%), Positives = 251/263 (95%)
Frame = +3
Query: 1035 YIDQEELNKTKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFI 1214
YIDQEELNKTKPIWTRNPDDIT EEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLF+
Sbjct: 284 YIDQEELNKTKPIWTRNPDDITNEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFV 343
Query: 1215 PRRAPFDLFENKKKKNNIKLYVRRVFIMDSCDELIPEYLNFIRGVVDSEDLPLNISREML 1394
PRRAPFDLFEN+KKKNNIKLYVRRVFIMD+C+ELIPEYLNFIRGVVDSEDLPLNISREML
Sbjct: 344 PRRAPFDLFENRKKKNNIKLYVRRVFIMDNCEELIPEYLNFIRGVVDSEDLPLNISREML 403
Query: 1395 QQSKILKVIRKNIVKKCLELFSELAEDKENYKKFYEAFSKNLKLGIHEDSTNRRRLSELL 1574
QQSKILKVIRKN+VKKCLELF+ELAEDKENYKKFYE FSKN+KLGIHEDS NR++LSELL
Sbjct: 404 QQSKILKVIRKNLVKKCLELFTELAEDKENYKKFYEQFSKNIKLGIHEDSQNRKKLSELL 463
Query: 1575 RYHTSQSGDEMTSLSEYVSRMKETQKSIYYITGESKEQVANSAFVERVRKRGFEVVYMTE 1754
RY+TS SGDEM SL +Y +RMKE QK IYYITGE+K+QVANSAFVER+RK G EV+YM E
Sbjct: 464 RYYTSASGDEMVSLKDYCTRMKENQKHIYYITGETKDQVANSAFVERLRKHGLEVIYMIE 523
Query: 1755 PIDEYCVQQLKEFDGKSLVSVTR 1823
PIDEYCVQQLKEF+GK+LVSVT+
Sbjct: 524 PIDEYCVQQLKEFEGKTLVSVTK 546
Score = 60.1 bits (144), Expect(3) = e-149
Identities = 27/39 (69%), Positives = 32/39 (82%)
Frame = +2
Query: 1892 NLCKLMKEILXIEVEKVTISXRLVSFTCCIVTSHYGWTA 2008
NLCK+MK+IL +VEKV +S RLV+ CCIVTS YGWTA
Sbjct: 570 NLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTA 608
Score = 29.3 bits (64), Expect(3) = e-149
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +1
Query: 2005 SNMERIMKAQALRD 2046
+NMERIMKAQALRD
Sbjct: 608 ANMERIMKAQALRD 621
Score = 381 bits (979), Expect = e-105
Identities = 191/206 (92%), Positives = 201/206 (97%)
Frame = +3
Query: 249 TFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKI 428
TFAFQAEIAQLMSLIINTFYSNKEIFLRELISN+SDALDKIRYESLTDPSKLDSGKEL I
Sbjct: 19 TFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHI 78
Query: 429 DIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGF 608
++IPN Q+RTLT+VDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGF
Sbjct: 79 NLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGF 138
Query: 609 YSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPIGRGTKVILHLKEDQTEYL 788
YSAYLVAEKV VITKHNDDEQYAWESSAGGSFTVR D GEP+GRGTKVILHLKEDQTEYL
Sbjct: 139 YSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILHLKEDQTEYL 198
Query: 789 EERRVKEVVKKHSQFIGYPITLYLEK 866
EERR+KE+VKKHSQFIGYPITL++EK
Sbjct: 199 EERRIKEIVKKHSQFIGYPITLFVEK 224
>ref|NP_003290.1| endoplasmin precursor [Homo sapiens].
Length = 803
Score = 278 bits (710), Expect(2) = 2e-77
Identities = 131/263 (49%), Positives = 192/263 (73%), Gaps = 2/263 (0%)
Frame = +3
Query: 1041 DQEELNKTKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPR 1220
D E +N KPIW R ++ ++EY FYKS + + +D +A HF+ EG++ F+++LF+P
Sbjct: 332 DWELMNDIKPIWQRPSKEVEEDEYKAFYKSFSKESDDPMAYIHFTAEGEVTFKSILFVPT 391
Query: 1221 RAPFDLFEN--KKKKNNIKLYVRRVFIMDSCDELIPEYLNFIRGVVDSEDLPLNISREML 1394
AP LF+ KK + IKLYVRRVFI D +++P+YLNF++GVVDS+DLPLN+SRE L
Sbjct: 392 SAPRGLFDEYGSKKSDYIKLYVRRVFITDDFHDMMPKYLNFVKGVVDSDDLPLNVSRETL 451
Query: 1395 QQSKILKVIRKNIVKKCLELFSELAEDKENYKKFYEAFSKNLKLGIHEDSTNRRRLSELL 1574
QQ K+LKVIRK +V+K L++ ++A+DK N F++ F N+KLG+ ED +NR RL++LL
Sbjct: 452 QQHKLLKVIRKKLVRKTLDMIKKIADDKYN-DTFWKEFGTNIKLGVIEDHSNRTRLAKLL 510
Query: 1575 RYHTSQSGDEMTSLSEYVSRMKETQKSIYYITGESKEQVANSAFVERVRKRGFEVVYMTE 1754
R+ +S ++TSL +YV RMKE Q IY++ G S+++ +S FVER+ K+G+EV+Y+TE
Sbjct: 511 RFQSSHHPTDITSLDQYVERMKEKQDKIYFMAGSSRKEAESSPFVERLLKKGYEVIYLTE 570
Query: 1755 PIDEYCVQQLKEFDGKSLVSVTR 1823
P+DEYC+Q L EFDGK +V +
Sbjct: 571 PVDEYCIQALPEFDGKRFQNVAK 593
Score = 32.0 bits (71), Expect(2) = 2e-77
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 1928 EVEKVTISXRLVSFTCCIVTSHYGWTATWSAS*KLKHFGT 2047
++EK +S RL C +V S YGW+ K + + T
Sbjct: 630 KIEKAVVSQRLTESPCALVASQYGWSGNMERIMKAQAYQT 669
Score = 215 bits (547), Expect = 1e-55
Identities = 116/211 (54%), Positives = 153/211 (72%), Gaps = 6/211 (2%)
Frame = +3
Query: 252 FAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKID 431
FAFQAE+ ++M LIIN+ Y NKEIFLRELISNASDALDKIR SLTD + L +EL +
Sbjct: 76 FAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALSGNEELTVK 135
Query: 432 IIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFM----EALQAGADIS-MIGQF 596
I + ++ L + DTG+GMT+ +L+ NLGTIAKSGT F+ EA + G S +IGQF
Sbjct: 136 IKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQF 195
Query: 597 GVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRAD-HGEPIGRGTKVILHLKED 773
GVGFYSA+LVA+KV+V +KHN+D Q+ WES + F+V AD G +GRGT + L LKE+
Sbjct: 196 GVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEFSVIADPRGNTLGRGTTITLVLKEE 254
Query: 774 QTEYLEERRVKEVVKKHSQFIGYPITLYLEK 866
++YLE +K +VKK+SQFI +PI ++ K
Sbjct: 255 ASDYLELDTIKNLVKKYSQFINFPIYVWSSK 285
>ref|NP_057376.2| heat shock protein 75 kDa, mitochondrial precursor [Homo sapiens].
Length = 704
Score = 177 bits (450), Expect = 3e-44
Identities = 94/203 (46%), Positives = 141/203 (69%), Gaps = 4/203 (1%)
Frame = +3
Query: 258 FQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDII 437
FQAE +L+ ++ + YS KE+F+RELISNASDAL+K+R++ ++D L E++I +
Sbjct: 90 FQAETKKLLDIVARSLYSEKEVFIRELISNASDALEKLRHKLVSDGQALP---EMEIHLQ 146
Query: 438 PNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADIS--MIGQFGVGFY 611
N ++ T+T+ DTGIGMT+ +L++NLGTIA+SG+KAF++ALQ A+ S +IGQFGVGFY
Sbjct: 147 TNAEKGTITIQDTGIGMTQEELVSNLGTIARSGSKAFLDALQNQAEASSKIIGQFGVGFY 206
Query: 612 SAYLVAEKVVVITKHNDDEQ--YAWESSAGGSFTVRADHGEPIGRGTKVILHLKEDQTEY 785
SA++VA++V V ++ Y W S G F + G + GTK+I+HLK D E+
Sbjct: 207 SAFMVADRVEVYSRSAAPGSLGYQWLSDGSGVFEIAEASG--VRTGTKIIIHLKSDCKEF 264
Query: 786 LEERRVKEVVKKHSQFIGYPITL 854
E RV++VV K+S F+ +P+ L
Sbjct: 265 SSEARVRDVVTKYSNFVSFPLYL 287
Score = 165 bits (418), Expect = 1e-40
Identities = 83/265 (31%), Positives = 156/265 (58%), Gaps = 4/265 (1%)
Frame = +3
Query: 1035 YIDQEELNKTKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFI 1214
Y++ +N + IW +P D+ + ++ EFY+ + + H+ + L R++ ++
Sbjct: 286 YLNGRRMNTLQAIWMMDPKDVREWQHEEFYRYVAQAHDKPRYTLHYKTDAPLNIRSIFYV 345
Query: 1215 PRRAPFDLFENKKKKNNIKLYVRRVFIMDSCDELIPEYLNFIRGVVDSEDLPLNISREML 1394
P P +++ +++ LY R+V I +++P++L FIRGVVDSED+PLN+SRE+L
Sbjct: 346 PDMKPSMFDVSRELGSSVALYSRKVLIQTKATDILPKWLRFIRGVVDSEDIPLNLSRELL 405
Query: 1395 QQSKILKVIRKNIVKKCLELF-SELAEDKENYKKFYEAFSKNLKLGI--HEDSTNRRRLS 1565
Q+S +++ +R + ++ ++ F + +D E Y KF+E + ++ GI + + ++
Sbjct: 406 QESALIRKLRDVLQQRLIKFFIDQSKKDAEKYAKFFEDYGLFMREGIVTATEQEVKEDIA 465
Query: 1566 ELLRYHTSQ-SGDEMTSLSEYVSRMKETQKSIYYITGESKEQVANSAFVERVRKRGFEVV 1742
+LLRY +S ++TSLSEY SRM+ ++IYY+ ++ +S + E ++K+ EV+
Sbjct: 466 KLLRYESSALPSGQLTSLSEYASRMRAGTRNIYYLCAPNRHLAEHSPYYEAMKKKDTEVL 525
Query: 1743 YMTEPIDEYCVQQLKEFDGKSLVSV 1817
+ E DE + L+EFD K L+SV
Sbjct: 526 FCFEQFDELTLLHLREFDKKKLISV 550
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 73,630,864
Number of extensions: 1941627
Number of successful extensions: 5809
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5789
Number of HSP's successfully gapped: 17
Length of query: 691
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 582
Effective length of database: 14,704,088
Effective search space: 8557779216
Effective search space used: 8557779216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001872
(2075 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032328.2| heat shock protein HSP 90-beta [Mus musculus]. 904 0.0
Alignment gi|NP_034610.1| heat shock protein HSP 90-alpha [Mus musculus]. 824 0.0
Alignment gi|NP_035761.1| endoplasmin [Mus musculus]. 277 3e-77
Alignment gi|NP_080784.1| heat shock protein 75 kDa, mitochondrial precur... 176 6e-44
>ref|NP_032328.2| heat shock protein HSP 90-beta [Mus musculus].
Length = 724
Score = 904 bits (2336), Expect(3) = 0.0
Identities = 470/538 (87%), Positives = 471/538 (87%)
Frame = +3
Query: 210 MPXXXXXXXXXXXTFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLT 389
MP TFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLT
Sbjct: 1 MPEEVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLT 60
Query: 390 DPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAG 569
DPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAG
Sbjct: 61 DPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAG 120
Query: 570 ADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPIGRGTK 749
ADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPIGRGTK
Sbjct: 121 ADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPIGRGTK 180
Query: 750 VILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKXXXXXXXXXXXXXXXXXXXXX 929
VILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEK
Sbjct: 181 VILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKEREKEISDDEAEEEKGEKEEE 240
Query: 930 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYIDQEELNKTKPIWTRNPDDITQEE 1109
YIDQEELNKTKPIWTRNPDDITQEE
Sbjct: 241 DKEDEEKPKIEDVGSDEEDDSGKDKKKKTKKIKEKYIDQEELNKTKPIWTRNPDDITQEE 300
Query: 1110 YGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKKNNIKLYVRRV 1289
YGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKKNNIKLYVRRV
Sbjct: 301 YGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKKNNIKLYVRRV 360
Query: 1290 FIMDSCDELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNIVKKCLELFSELA 1469
FIMDSCDELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNIVKKCLELFSELA
Sbjct: 361 FIMDSCDELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNIVKKCLELFSELA 420
Query: 1470 EDKENYKKFYEAFSKNLKLGIHEDSTNRRRLSELLRYHTSQSGDEMTSLSEYVSRMKETQ 1649
EDKENYKKFYEAFSKNLKLGIHEDSTNRRRLSELLRYHTSQSGDEMTSLSEYVSRMKETQ
Sbjct: 421 EDKENYKKFYEAFSKNLKLGIHEDSTNRRRLSELLRYHTSQSGDEMTSLSEYVSRMKETQ 480
Query: 1650 KSIYYITGESKEQVANSAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTR 1823
KSIYYITGESKEQVANSAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFDGKSLVSVT+
Sbjct: 481 KSIYYITGESKEQVANSAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTK 538
Score = 65.5 bits (158), Expect(3) = 0.0
Identities = 32/39 (82%), Positives = 33/39 (84%)
Frame = +2
Query: 1892 NLCKLMKEILXIEVEKVTISXRLVSFTCCIVTSHYGWTA 2008
NLCKLMKEIL +VEKVTIS RLVS CCIVTS YGWTA
Sbjct: 562 NLCKLMKEILDKKVEKVTISNRLVSSPCCIVTSTYGWTA 600
Score = 29.3 bits (64), Expect(3) = 0.0
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +1
Query: 2005 SNMERIMKAQALRD 2046
+NMERIMKAQALRD
Sbjct: 600 ANMERIMKAQALRD 613
>ref|NP_034610.1| heat shock protein HSP 90-alpha [Mus musculus].
Length = 733
Score = 824 bits (2129), Expect(3) = 0.0
Identities = 419/529 (79%), Positives = 452/529 (85%), Gaps = 4/529 (0%)
Frame = +3
Query: 249 TFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKI 428
TFAFQAEIAQLMSLIINTFYSNKEIFLRELISN+SDALDKIRYESLTDPSKLDSGKEL I
Sbjct: 19 TFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHI 78
Query: 429 DIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGF 608
++IP+ Q+RTLT+VDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGF
Sbjct: 79 NLIPSKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGF 138
Query: 609 YSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPIGRGTKVILHLKEDQTEYL 788
YSAYLVAEKV VITKHNDDEQYAWESSAGGSFTVR D GEP+GRGTKVILHLKEDQTEYL
Sbjct: 139 YSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILHLKEDQTEYL 198
Query: 789 EERRVKEVVKKHSQFIGYPITLYL----EKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 956
EERR+KE+VKKHSQFIGYPITL++ +K
Sbjct: 199 EERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDEAEEKEEKEEEKEKEEKESDDKPEI 258
Query: 957 XXXXXXXXXXXXXXXXXXXXXXXXXXYIDQEELNKTKPIWTRNPDDITQEEYGEFYKSLT 1136
YIDQEELNKTKPIWTRNPDDIT EEYGEFYKSLT
Sbjct: 259 EDVGSDEEEEEKKDGDKKKKKKIKEKYIDQEELNKTKPIWTRNPDDITNEEYGEFYKSLT 318
Query: 1137 NDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKKNNIKLYVRRVFIMDSCDEL 1316
NDWE+HLAVKHFSVEGQLEFRALLF+PRRAPFDLFEN+KKKNNIKLYVRRVFIMD+C+EL
Sbjct: 319 NDWEEHLAVKHFSVEGQLEFRALLFVPRRAPFDLFENRKKKNNIKLYVRRVFIMDNCEEL 378
Query: 1317 IPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNIVKKCLELFSELAEDKENYKKF 1496
IPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKN+VKKCLELF+ELAEDKENYKKF
Sbjct: 379 IPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNLVKKCLELFTELAEDKENYKKF 438
Query: 1497 YEAFSKNLKLGIHEDSTNRRRLSELLRYHTSQSGDEMTSLSEYVSRMKETQKSIYYITGE 1676
YE FSKN+KLGIHEDS NR++LSELLRY+TS SGDEM SL +Y +RMKE QK IY+ITGE
Sbjct: 439 YEQFSKNIKLGIHEDSQNRKKLSELLRYYTSASGDEMVSLKDYCTRMKENQKHIYFITGE 498
Query: 1677 SKEQVANSAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTR 1823
+K+QVANSAFVER+RK G EV+YM EPIDEYCVQQLKEF+GK+LVSVT+
Sbjct: 499 TKDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTK 547
Score = 60.1 bits (144), Expect(3) = 0.0
Identities = 27/39 (69%), Positives = 32/39 (82%)
Frame = +2
Query: 1892 NLCKLMKEILXIEVEKVTISXRLVSFTCCIVTSHYGWTA 2008
NLCK+MK+IL +VEKV +S RLV+ CCIVTS YGWTA
Sbjct: 571 NLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTA 609
Score = 29.3 bits (64), Expect(3) = 0.0
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +1
Query: 2005 SNMERIMKAQALRD 2046
+NMERIMKAQALRD
Sbjct: 609 ANMERIMKAQALRD 622
>ref|NP_035761.1| endoplasmin [Mus musculus].
Length = 802
Score = 277 bits (708), Expect(2) = 3e-77
Identities = 130/263 (49%), Positives = 192/263 (73%), Gaps = 2/263 (0%)
Frame = +3
Query: 1041 DQEELNKTKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPR 1220
D E +N KPIW R ++ ++EY FYKS + + +D +A HF+ EG++ F+++LF+P
Sbjct: 332 DWELMNDIKPIWQRPSKEVEEDEYKAFYKSFSKESDDPMAYIHFTAEGEVTFKSILFVPT 391
Query: 1221 RAPFDLFEN--KKKKNNIKLYVRRVFIMDSCDELIPEYLNFIRGVVDSEDLPLNISREML 1394
AP LF+ KK + IKLYVRRVFI D +++P+YLNF++GVVDS+DLPLN+SRE L
Sbjct: 392 SAPRGLFDEYGSKKSDYIKLYVRRVFITDDFHDMMPKYLNFVKGVVDSDDLPLNVSRETL 451
Query: 1395 QQSKILKVIRKNIVKKCLELFSELAEDKENYKKFYEAFSKNLKLGIHEDSTNRRRLSELL 1574
QQ K+LKVIRK +V+K L++ ++A++K N F++ F N+KLG+ ED +NR RL++LL
Sbjct: 452 QQHKLLKVIRKKLVRKTLDMIKKIADEKYN-DTFWKEFGTNIKLGVIEDHSNRTRLAKLL 510
Query: 1575 RYHTSQSGDEMTSLSEYVSRMKETQKSIYYITGESKEQVANSAFVERVRKRGFEVVYMTE 1754
R+ +S ++TSL +YV RMKE Q IY++ G S+++ +S FVER+ K+G+EV+Y+TE
Sbjct: 511 RFQSSHHSTDITSLDQYVERMKEKQDKIYFMAGSSRKEAESSPFVERLLKKGYEVIYLTE 570
Query: 1755 PIDEYCVQQLKEFDGKSLVSVTR 1823
P+DEYC+Q L EFDGK +V +
Sbjct: 571 PVDEYCIQALPEFDGKRFQNVAK 593
Score = 32.0 bits (71), Expect(2) = 3e-77
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 1928 EVEKVTISXRLVSFTCCIVTSHYGWTATWSAS*KLKHFGT 2047
++EK +S RL C +V S YGW+ K + + T
Sbjct: 630 KIEKAVVSQRLTESPCALVASQYGWSGNMERIMKAQAYQT 669
Score = 213 bits (542), Expect = 5e-55
Identities = 115/211 (54%), Positives = 153/211 (72%), Gaps = 6/211 (2%)
Frame = +3
Query: 252 FAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKID 431
FAFQAE+ ++M LIIN+ Y NKEIFLRELISNASDALDKIR SLTD + L +EL +
Sbjct: 76 FAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVK 135
Query: 432 IIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFM----EALQAGADIS-MIGQF 596
I + ++ L + DTG+GMT+ +L+ NLGTIAKSGT F+ EA + G S +IGQF
Sbjct: 136 IKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQF 195
Query: 597 GVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRAD-HGEPIGRGTKVILHLKED 773
GVGFYSA+LVA+KV+V +KHN+D Q+ WES + F+V AD G +GRGT + L LKE+
Sbjct: 196 GVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEFSVIADPRGNTLGRGTTITLVLKEE 254
Query: 774 QTEYLEERRVKEVVKKHSQFIGYPITLYLEK 866
++YLE +K +V+K+SQFI +PI ++ K
Sbjct: 255 ASDYLELDTIKNLVRKYSQFINFPIYVWSSK 285
>ref|NP_080784.1| heat shock protein 75 kDa, mitochondrial precursor [Mus musculus].
Length = 706
Score = 176 bits (446), Expect = 6e-44
Identities = 94/203 (46%), Positives = 141/203 (69%), Gaps = 4/203 (1%)
Frame = +3
Query: 258 FQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDII 437
FQAE +L+ ++ + YS KE+F+RELISNASDAL+K+R++ + + L E++I +
Sbjct: 92 FQAETKKLLDIVARSLYSEKEVFIRELISNASDALEKLRHKLVCEGQVLP---EMEIHLQ 148
Query: 438 PNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADIS--MIGQFGVGFY 611
+ ++ T+T+ DTGIGMT+ +L++NLGTIA+SG+KAF+EALQ A+ S +IGQFGVGFY
Sbjct: 149 TDAKKGTITIQDTGIGMTQEELVSNLGTIARSGSKAFLEALQNQAETSSKIIGQFGVGFY 208
Query: 612 SAYLVAEKVVVITKHNDDEQ--YAWESSAGGSFTVRADHGEPIGRGTKVILHLKEDQTEY 785
SA++VA+KV V ++ E Y W S G F + G + GTK+I+HLK D ++
Sbjct: 209 SAFMVADKVEVYSRSAAPESPGYQWLSDGSGVFEIAEASG--VRPGTKIIIHLKSDCKDF 266
Query: 786 LEERRVKEVVKKHSQFIGYPITL 854
E RV++VV K+S F+ +P+ L
Sbjct: 267 ASESRVQDVVTKYSNFVSFPLYL 289
Score = 164 bits (414), Expect = 3e-40
Identities = 81/265 (30%), Positives = 158/265 (59%), Gaps = 4/265 (1%)
Frame = +3
Query: 1035 YIDQEELNKTKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFI 1214
Y++ + +N + IW +P DI++ ++ EFY+ + ++ H+ + L R++ ++
Sbjct: 288 YLNGKRINTLQAIWMMDPKDISEFQHEEFYRYIAQAYDKPRFTLHYKTDAPLNIRSIFYV 347
Query: 1215 PRRAPFDLFENKKKKNNIKLYVRRVFIMDSCDELIPEYLNFIRGVVDSEDLPLNISREML 1394
P P +++ +++ LY R+V I +++P++L FIRGVVDSED+PLN+SRE+L
Sbjct: 348 PEMKPSMFDVSRELGSSVALYSRKVLIQTKAADILPKWLRFIRGVVDSEDIPLNLSRELL 407
Query: 1395 QQSKILKVIRKNIVKKCLELF-SELAEDKENYKKFYEAFSKNLKLGI--HEDSTNRRRLS 1565
Q+S +++ +R + ++ ++ F + +D E Y KF+E + ++ GI + + ++
Sbjct: 408 QESALIRKLRDVLQQRLIKFFIDQSKKDAEKYAKFFEDYGLFMREGIVTTAEQDIKEDIA 467
Query: 1566 ELLRYHTSQ-SGDEMTSLSEYVSRMKETQKSIYYITGESKEQVANSAFVERVRKRGFEVV 1742
+LLRY +S ++TSL +Y SRM+ ++IYY+ ++ +S + E ++++ EV+
Sbjct: 468 KLLRYESSALPAGQLTSLPDYASRMQAGTRNIYYLCAPNRHLAEHSPYYEAMKQKHTEVL 527
Query: 1743 YMTEPIDEYCVQQLKEFDGKSLVSV 1817
+ E DE + L+EFD K L+SV
Sbjct: 528 FCYEQFDELTLLHLREFDKKKLISV 552
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 62,482,495
Number of extensions: 1626109
Number of successful extensions: 4897
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4881
Number of HSP's successfully gapped: 13
Length of query: 691
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 583
Effective length of database: 12,373,671
Effective search space: 7213850193
Effective search space used: 7213850193
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001872
(2075 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001929605.1| PREDICTED: heat shock protein HSP 90-beta is... 904 0.0
Alignment gi|NP_999138.1| heat shock protein HSP 90-alpha [Sus scrofa]. 829 0.0
Alignment gi|NP_999268.1| endoplasmin precursor [Sus scrofa]. 276 5e-77
Alignment gi|XP_003355702.1| PREDICTED: endoplasmin-like [Sus scrofa]. 276 5e-77
Alignment gi|NP_001230874.1| TNF receptor-associated protein 1 [Sus scrof... 176 4e-44
Alignment gi|XP_003123773.1| PREDICTED: hypothetical protein LOC100522124... 132 6e-31
>ref|XP_001929605.1| PREDICTED: heat shock protein HSP 90-beta isoform 1 [Sus scrofa].
Length = 724
Score = 904 bits (2336), Expect(3) = 0.0
Identities = 470/538 (87%), Positives = 471/538 (87%)
Frame = +3
Query: 210 MPXXXXXXXXXXXTFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLT 389
MP TFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLT
Sbjct: 1 MPEEVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLT 60
Query: 390 DPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAG 569
DPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAG
Sbjct: 61 DPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAG 120
Query: 570 ADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPIGRGTK 749
ADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPIGRGTK
Sbjct: 121 ADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPIGRGTK 180
Query: 750 VILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKXXXXXXXXXXXXXXXXXXXXX 929
VILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEK
Sbjct: 181 VILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKEREKEISDDEAEEEKGDKEEE 240
Query: 930 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYIDQEELNKTKPIWTRNPDDITQEE 1109
YIDQEELNKTKPIWTRNPDDITQEE
Sbjct: 241 DKDDEEKPKIEDVGSDEEDDSGKDKKKKTKKIKEKYIDQEELNKTKPIWTRNPDDITQEE 300
Query: 1110 YGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKKNNIKLYVRRV 1289
YGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKKNNIKLYVRRV
Sbjct: 301 YGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKKNNIKLYVRRV 360
Query: 1290 FIMDSCDELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNIVKKCLELFSELA 1469
FIMDSCDELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNIVKKCLELFSELA
Sbjct: 361 FIMDSCDELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNIVKKCLELFSELA 420
Query: 1470 EDKENYKKFYEAFSKNLKLGIHEDSTNRRRLSELLRYHTSQSGDEMTSLSEYVSRMKETQ 1649
EDKENYKKFYEAFSKNLKLGIHEDSTNRRRLSELLRYHTSQSGDEMTSLSEYVSRMKETQ
Sbjct: 421 EDKENYKKFYEAFSKNLKLGIHEDSTNRRRLSELLRYHTSQSGDEMTSLSEYVSRMKETQ 480
Query: 1650 KSIYYITGESKEQVANSAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTR 1823
KSIYYITGESKEQVANSAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFDGKSLVSVT+
Sbjct: 481 KSIYYITGESKEQVANSAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTK 538
Score = 65.5 bits (158), Expect(3) = 0.0
Identities = 32/39 (82%), Positives = 33/39 (84%)
Frame = +2
Query: 1892 NLCKLMKEILXIEVEKVTISXRLVSFTCCIVTSHYGWTA 2008
NLCKLMKEIL +VEKVTIS RLVS CCIVTS YGWTA
Sbjct: 562 NLCKLMKEILDKKVEKVTISNRLVSSPCCIVTSTYGWTA 600
Score = 29.3 bits (64), Expect(3) = 0.0
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +1
Query: 2005 SNMERIMKAQALRD 2046
+NMERIMKAQALRD
Sbjct: 600 ANMERIMKAQALRD 613
>ref|NP_999138.1| heat shock protein HSP 90-alpha [Sus scrofa].
Length = 733
Score = 829 bits (2142), Expect(3) = 0.0
Identities = 422/529 (79%), Positives = 452/529 (85%), Gaps = 4/529 (0%)
Frame = +3
Query: 249 TFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKI 428
TFAFQAEIAQLMSLIINTFYSNKEIFLRELISN+SDALDKIRYESLTDPSKLDSGKEL I
Sbjct: 19 TFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHI 78
Query: 429 DIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGF 608
++IPN Q+RTLT+VDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGF
Sbjct: 79 NLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGF 138
Query: 609 YSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPIGRGTKVILHLKEDQTEYL 788
YSAYLVAEKV VITKHNDDEQYAWESSAGGSFTVR D GEP+GRGTKVILHLKEDQTEYL
Sbjct: 139 YSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILHLKEDQTEYL 198
Query: 789 EERRVKEVVKKHSQFIGYPITLYL----EKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 956
EERR+KE+VKKHSQFIGYPITL++ +K
Sbjct: 199 EERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDEAEEKEDKEEEKEKEEKESEDKPEI 258
Query: 957 XXXXXXXXXXXXXXXXXXXXXXXXXXYIDQEELNKTKPIWTRNPDDITQEEYGEFYKSLT 1136
YIDQEELNKTKPIWTRNPDDIT EEYGEFYKSLT
Sbjct: 259 EDVGSDEEEEEKKDGDKKKKKKIKEKYIDQEELNKTKPIWTRNPDDITNEEYGEFYKSLT 318
Query: 1137 NDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFENKKKKNNIKLYVRRVFIMDSCDEL 1316
NDWEDHLAVKHFSVEGQLEFRALLF+PRRAPFDLFEN+KKKNNIKLYVRRVFIMD+C+EL
Sbjct: 319 NDWEDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFENRKKKNNIKLYVRRVFIMDNCEEL 378
Query: 1317 IPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNIVKKCLELFSELAEDKENYKKF 1496
IPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKN+VKKCLELF+ELAEDKENYKKF
Sbjct: 379 IPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNLVKKCLELFTELAEDKENYKKF 438
Query: 1497 YEAFSKNLKLGIHEDSTNRRRLSELLRYHTSQSGDEMTSLSEYVSRMKETQKSIYYITGE 1676
YE FSKN+KLGIHEDS NR++LSELLRY+TS SGDEM SL +Y +RMKE QK IYYITGE
Sbjct: 439 YEQFSKNIKLGIHEDSQNRKKLSELLRYYTSASGDEMVSLKDYCTRMKENQKHIYYITGE 498
Query: 1677 SKEQVANSAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTR 1823
+K+QVANSAFVER+RK G EV+YM EPIDEYCVQQLKEF+GK+LVSVT+
Sbjct: 499 TKDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTK 547
Score = 60.1 bits (144), Expect(3) = 0.0
Identities = 27/39 (69%), Positives = 32/39 (82%)
Frame = +2
Query: 1892 NLCKLMKEILXIEVEKVTISXRLVSFTCCIVTSHYGWTA 2008
NLCK+MK+IL +VEKV +S RLV+ CCIVTS YGWTA
Sbjct: 571 NLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTA 609
Score = 29.3 bits (64), Expect(3) = 0.0
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +1
Query: 2005 SNMERIMKAQALRD 2046
+NMERIMKAQALRD
Sbjct: 609 ANMERIMKAQALRD 622
>ref|NP_999268.1| endoplasmin precursor [Sus scrofa].
Length = 804
Score = 276 bits (705), Expect(2) = 5e-77
Identities = 130/263 (49%), Positives = 191/263 (72%), Gaps = 2/263 (0%)
Frame = +3
Query: 1041 DQEELNKTKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPR 1220
D E +N KPIW R ++ +EY FYKS + + +D +A HF+ EG++ F+++LF+P
Sbjct: 332 DWELMNDIKPIWQRPSKEVEDDEYKAFYKSFSKESDDPMAYIHFTAEGEVTFKSILFVPT 391
Query: 1221 RAPFDLFEN--KKKKNNIKLYVRRVFIMDSCDELIPEYLNFIRGVVDSEDLPLNISREML 1394
AP LF+ KK + IKLYVRRVFI D +++P+YLNF++GVVDS+DLPLN+SRE L
Sbjct: 392 SAPRGLFDEYGSKKSDYIKLYVRRVFITDDFHDMMPKYLNFVKGVVDSDDLPLNVSRETL 451
Query: 1395 QQSKILKVIRKNIVKKCLELFSELAEDKENYKKFYEAFSKNLKLGIHEDSTNRRRLSELL 1574
QQ K+LKVIRK +V+K L++ ++A++K N F++ F N+KLG+ ED +NR RL++LL
Sbjct: 452 QQHKLLKVIRKKLVRKTLDMIKKIADEKYN-DTFWKEFGTNIKLGVIEDHSNRTRLAKLL 510
Query: 1575 RYHTSQSGDEMTSLSEYVSRMKETQKSIYYITGESKEQVANSAFVERVRKRGFEVVYMTE 1754
R+ +S ++TSL +YV RMKE Q IY++ G S+++ +S FVER+ K+G+EV+Y+TE
Sbjct: 511 RFQSSHHPSDITSLDQYVERMKEKQDKIYFMAGSSRKEAESSPFVERLLKKGYEVIYLTE 570
Query: 1755 PIDEYCVQQLKEFDGKSLVSVTR 1823
P+DEYC+Q L EFDGK +V +
Sbjct: 571 PVDEYCIQALPEFDGKRFQNVAK 593
Score = 32.0 bits (71), Expect(2) = 5e-77
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 1928 EVEKVTISXRLVSFTCCIVTSHYGWTATWSAS*KLKHFGT 2047
++EK +S RL C +V S YGW+ K + + T
Sbjct: 630 KIEKAVVSQRLTESPCALVASQYGWSGNMERIMKAQAYQT 669
Score = 214 bits (545), Expect = 1e-55
Identities = 116/211 (54%), Positives = 153/211 (72%), Gaps = 6/211 (2%)
Frame = +3
Query: 252 FAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKID 431
FAFQAE+ ++M LIIN+ Y NKEIFLRELISNASDALDKIR SLTD + L +EL +
Sbjct: 76 FAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVK 135
Query: 432 IIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFM----EALQAGADIS-MIGQF 596
I + ++ L + DTG+GMT+ +L+ NLGTIAKSGT F+ EA + G S +IGQF
Sbjct: 136 IKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQF 195
Query: 597 GVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRAD-HGEPIGRGTKVILHLKED 773
GVGFYSA+LVA+KV+V +KHN+D Q+ WES + F+V AD G +GRGT + L LKE+
Sbjct: 196 GVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEFSVIADPRGNTLGRGTTITLVLKEE 254
Query: 774 QTEYLEERRVKEVVKKHSQFIGYPITLYLEK 866
++YLE +K +VKK+SQFI +PI ++ K
Sbjct: 255 ASDYLELDTIKNLVKKYSQFINFPIYVWSSK 285
>ref|XP_003355702.1| PREDICTED: endoplasmin-like [Sus scrofa].
Length = 492
Score = 276 bits (705), Expect(2) = 5e-77
Identities = 130/263 (49%), Positives = 191/263 (72%), Gaps = 2/263 (0%)
Frame = +3
Query: 1041 DQEELNKTKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPR 1220
D E +N KPIW R ++ +EY FYKS + + +D +A HF+ EG++ F+++LF+P
Sbjct: 20 DWELMNDIKPIWQRPSKEVEDDEYKAFYKSFSKESDDPMAYIHFTAEGEVTFKSILFVPT 79
Query: 1221 RAPFDLFEN--KKKKNNIKLYVRRVFIMDSCDELIPEYLNFIRGVVDSEDLPLNISREML 1394
AP LF+ KK + IKLYVRRVFI D +++P+YLNF++GVVDS+DLPLN+SRE L
Sbjct: 80 SAPRGLFDEYGSKKSDYIKLYVRRVFITDDFHDMMPKYLNFVKGVVDSDDLPLNVSRETL 139
Query: 1395 QQSKILKVIRKNIVKKCLELFSELAEDKENYKKFYEAFSKNLKLGIHEDSTNRRRLSELL 1574
QQ K+LKVIRK +V+K L++ ++A++K N F++ F N+KLG+ ED +NR RL++LL
Sbjct: 140 QQHKLLKVIRKKLVRKTLDMIKKIADEKYN-DTFWKEFGTNIKLGVIEDHSNRTRLAKLL 198
Query: 1575 RYHTSQSGDEMTSLSEYVSRMKETQKSIYYITGESKEQVANSAFVERVRKRGFEVVYMTE 1754
R+ +S ++TSL +YV RMKE Q IY++ G S+++ +S FVER+ K+G+EV+Y+TE
Sbjct: 199 RFQSSHHPSDITSLDQYVERMKEKQDKIYFMAGSSRKEAESSPFVERLLKKGYEVIYLTE 258
Query: 1755 PIDEYCVQQLKEFDGKSLVSVTR 1823
P+DEYC+Q L EFDGK +V +
Sbjct: 259 PVDEYCIQALPEFDGKRFQNVAK 281
Score = 32.0 bits (71), Expect(2) = 5e-77
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 1928 EVEKVTISXRLVSFTCCIVTSHYGWTATWSAS*KLKHFGT 2047
++EK +S RL C +V S YGW+ K + + T
Sbjct: 318 KIEKAVVSQRLTESPCALVASQYGWSGNMERIMKAQAYQT 357
>ref|NP_001230874.1| TNF receptor-associated protein 1 [Sus scrofa].
Length = 702
Score = 176 bits (446), Expect = 4e-44
Identities = 91/203 (44%), Positives = 142/203 (69%), Gaps = 4/203 (1%)
Frame = +3
Query: 258 FQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDII 437
FQAE +L+ ++ + YS KE+F+RELISNASDAL+++R++ +++ L E++I +
Sbjct: 88 FQAETKKLLDIVARSLYSEKEVFIRELISNASDALERLRHKLVSEGQTLP---EMEIHLQ 144
Query: 438 PNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADIS--MIGQFGVGFY 611
+ ++ T+T+ DTG+GMT+ +L++NLGTIA+SG+KAF++ALQ A+ S +IGQFGVGFY
Sbjct: 145 TDSEKGTITIQDTGVGMTREELVSNLGTIARSGSKAFLDALQNQAEASGKIIGQFGVGFY 204
Query: 612 SAYLVAEKVVVITKHND--DEQYAWESSAGGSFTVRADHGEPIGRGTKVILHLKEDQTEY 785
SA++VA+KV V ++ D + W S G F + G + GTK+I+HLK D E+
Sbjct: 205 SAFMVADKVEVYSRSVDAGSPGFQWLSDGSGVFEIAEAAG--VRTGTKIIIHLKADSREF 262
Query: 786 LEERRVKEVVKKHSQFIGYPITL 854
E RV++VV K+S F+ +P+ L
Sbjct: 263 AHEARVRDVVTKYSNFVSFPLYL 285
Score = 161 bits (407), Expect = 1e-39
Identities = 80/265 (30%), Positives = 155/265 (58%), Gaps = 4/265 (1%)
Frame = +3
Query: 1035 YIDQEELNKTKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFI 1214
Y++ LN + +W +P D+++E++ EFY+ + + H+ + L R+ ++
Sbjct: 284 YLNGRRLNTLQAVWMMDPKDVSEEQHEEFYRYVAQAPDKPRYTLHYKTDAPLNIRSTFYV 343
Query: 1215 PRRAPFDLFENKKKKNNIKLYVRRVFIMDSCDELIPEYLNFIRGVVDSEDLPLNISREML 1394
P P +++ ++ LY R+V I ++P +L F+RGVVDSED+PLN+SRE+L
Sbjct: 344 PEMKPSVFDVSRELGPSVSLYSRKVLIQTKATNILPTWLRFVRGVVDSEDIPLNLSRELL 403
Query: 1395 QQSKILKVIRKNIVKKCLELFSELA-EDKENYKKFYEAFSKNLKLGI--HEDSTNRRRLS 1565
Q+S +++ ++ + ++ ++ FS+ + +D E Y +F+E + ++ GI + + ++
Sbjct: 404 QESALIRKLQGVLQQRLIKFFSDQSKKDVEKYARFFEDYGLFMREGIVTTTEQEVKEDIA 463
Query: 1566 ELLRYHTSQ-SGDEMTSLSEYVSRMKETQKSIYYITGESKEQVANSAFVERVRKRGFEVV 1742
+LLRY +S ++TSL +Y SRM+ +SIYY+ ++ +S + E ++++ EV+
Sbjct: 464 KLLRYESSALPAGQLTSLPDYASRMQAGTRSIYYLCAPNRHLAEHSPYYEAMKQKNTEVL 523
Query: 1743 YMTEPIDEYCVQQLKEFDGKSLVSV 1817
+ E DE + L+EFD K L+SV
Sbjct: 524 FCYEQFDELTLLHLREFDRKKLISV 548
>ref|XP_003123773.1| PREDICTED: hypothetical protein LOC100522124 [Sus scrofa].
Length = 241
Score = 132 bits (333), Expect = 6e-31
Identities = 73/118 (61%), Positives = 84/118 (71%), Gaps = 1/118 (0%)
Frame = +3
Query: 1332 NFIRGVVDSEDLPLNISREMLQQSKILKVIRKNIVKKCLELFSELAEDKENYKKFYEAFS 1511
NFI GV+ SED P N+S+EMLQQS +LK+ RKN V KCL LFSELAEDK N K Y AFS
Sbjct: 122 NFIHGVLASEDFPRNLSQEMLQQSPVLKLFRKNTVTKCLALFSELAEDKVNAKNIYAAFS 181
Query: 1512 KNLKLGIHEDSTNRRRLSELLRYHTSQSGDEMTSLSEYVS-RMKETQKSIYYITGESK 1682
K KLG+H+D+ +R+ ELL YH SGDEMT LS V +ETQ SI Y TGESK
Sbjct: 182 KTRKLGLHKDAPHRQCPPELLHYHIISSGDEMTPLSLRVCLSHEETQASIDYRTGESK 239
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 46,174,411
Number of extensions: 1221788
Number of successful extensions: 3866
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3846
Number of HSP's successfully gapped: 16
Length of query: 691
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 585
Effective length of database: 8,704,850
Effective search space: 5092337250
Effective search space used: 5092337250
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001872
(2075 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 452 e-124
Sscrofa_Chr02 182 5e-43
Sscrofa_Chr05 62 1e-06
>Sscrofa_Chr07
|| Length = 134764511
Score = 452 bits (228), Expect = e-124
Identities = 264/273 (96%), Gaps = 3/273 (1%)
Strand = Plus / Plus
Query: 1671 ggtgagagcaaggagcaggttgccaactctgcgtttgtggagcgtgtgcggaagcggggt 1730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45118302 ggtgagagcaaggagcaggttgccaactctgcgtttgtggagcgtgtgcggaagcggggt 45118361
Query: 1731 ttcgaggtggtgtacatgacagagcccatcgacgagtactgtgtgcaacagctcaaggag 1790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45118362 ttcgaggtggtgtacatgacagagcccatcgacgagtactgtgtgcaacagctcaaggag 45118421
Query: 1791 tttgatgggaagagcctggtctcagtta-caaggagggcctggagctgcctgaggatgag 1849
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 45118422 tttgatgggaagagcctggtctcagttaccaaggagggcctggagctgcctgaggatgag 45118481
Query: 1850 gaggagaagaaaaagatggaggagagcaagggccnag-ttgagaacctctgcaaactcat 1908
||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||
Sbjct: 45118482 gaggagaagaaaaagatggaggagagcaa-ggccaagtttgagaacctctgcaaactcat 45118540
Query: 1909 gaaagagatcttggnnatagaagtagagaaggt 1941
|||||||||||||| | |||||||||||||
Sbjct: 45118541 gaaagagatcttggataagaaagtagagaaggt 45118573
Score = 428 bits (216), Expect = e-117
Identities = 216/216 (100%)
Strand = Plus / Plus
Query: 951 cccaagattgaagatgtgggctcagatgaggaggatgatagtggcaaagataagaaaaag 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45116224 cccaagattgaagatgtgggctcagatgaggaggatgatagtggcaaagataagaaaaag 45116283
Query: 1011 aagacaaaaaagatcaaggagaagtatattgatcaggaagaactgaacaagaccaagccc 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45116284 aagacaaaaaagatcaaggagaagtatattgatcaggaagaactgaacaagaccaagccc 45116343
Query: 1071 atctggaccaggaaccctgatgacatcacccaggaggaatatggagagttctacaaaagc 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45116344 atctggaccaggaaccctgatgacatcacccaggaggaatatggagagttctacaaaagc 45116403
Query: 1131 ctgaccaatgactgggaagatcacctggcagtcaag 1166
||||||||||||||||||||||||||||||||||||
Sbjct: 45116404 ctgaccaatgactgggaagatcacctggcagtcaag 45116439
Score = 412 bits (208), Expect = e-112
Identities = 208/208 (100%)
Strand = Plus / Plus
Query: 357 gccttggacaagattcgctatgagagcctgacagacccttccaaattggacagtggtaaa 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45115292 gccttggacaagattcgctatgagagcctgacagacccttccaaattggacagtggtaaa 45115351
Query: 417 gagctgaaaattgacatcatccccaacccccaggagcgcaccctgactctggtagacaca 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45115352 gagctgaaaattgacatcatccccaacccccaggagcgcaccctgactctggtagacaca 45115411
Query: 477 ggcattggcatgaccaaagctgatctcataaataatttgggaaccattgccaagtctggt 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45115412 ggcattggcatgaccaaagctgatctcataaataatttgggaaccattgccaagtctggt 45115471
Query: 537 actaaagcatttatggaggctcttcagg 564
||||||||||||||||||||||||||||
Sbjct: 45115472 actaaagcatttatggaggctcttcagg 45115499
Score = 398 bits (201), Expect = e-108
Identities = 207/209 (99%)
Strand = Plus / Plus
Query: 1 gcggcaggtgcggggctgacagacagcctcctttaaggcggagggatctgggggcgggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45113264 gcggcaggtgcggggctgacagacagcctcctttaaggcggagggatctgggggcgggca 45113323
Query: 61 gcgaaggtgtgcttcgccttatataaagcgactggggtctcacagccgggctcttgagtc 120
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 45113324 gcgaaggtgtgcttcgccttatataaagcgactggggtctcacagccgttctcttgagtc 45113383
Query: 121 accccccgcgcagccttgttctggcgtgagagccggaggcagtccttccccgctcagctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45113384 accccccgcgcagccttgttctggcgtgagagccggaggcagtccttccccgctcagctt 45113443
Query: 181 tgtggtgtttgtgatccttatcctttaag 209
|||||||||||||||||||||||||||||
Sbjct: 45113444 tgtggtgtttgtgatccttatcctttaag 45113472
Score = 379 bits (191), Expect = e-102
Identities = 191/191 (100%)
Strand = Plus / Plus
Query: 1333 acttcatccgcggtgtggttgactctgaagaccttcccctgaacatctcccgagaaatgc 1392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45117730 acttcatccgcggtgtggttgactctgaagaccttcccctgaacatctcccgagaaatgc 45117789
Query: 1393 tccagcagagcaagattttgaaggtcattcgtaaaaacattgttaagaagtgcctggagc 1452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45117790 tccagcagagcaagattttgaaggtcattcgtaaaaacattgttaagaagtgcctggagc 45117849
Query: 1453 tcttctctgagctggcagaagacaaggagaactacaagaaattctacgaggctttctcaa 1512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45117850 tcttctctgagctggcagaagacaaggagaactacaagaaattctacgaggctttctcaa 45117909
Query: 1513 aaaatctaaag 1523
|||||||||||
Sbjct: 45117910 aaaatctaaag 45117920
Score = 333 bits (168), Expect = 2e-88
Identities = 168/168 (100%)
Strand = Plus / Plus
Query: 1165 agcacttctctgtagaaggtcagttggaattcagagcattgctgttcatcccccgtcggg 1224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45117112 agcacttctctgtagaaggtcagttggaattcagagcattgctgttcatcccccgtcggg 45117171
Query: 1225 ctccttttgacctctttgagaacaaaaagaaaaagaacaacatcaaactttacgttcgcc 1284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45117172 ctccttttgacctctttgagaacaaaaagaaaaagaacaacatcaaactttacgttcgcc 45117231
Query: 1285 gtgtgttcatcatggacagctgcgatgagctgataccagagtacctca 1332
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45117232 gtgtgttcatcatggacagctgcgatgagctgataccagagtacctca 45117279
Score = 325 bits (164), Expect = 6e-86
Identities = 164/164 (100%)
Strand = Plus / Plus
Query: 562 aggctggtgcagacatctccatgattggacagtttggtgttggcttctattctgcctacc 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45115598 aggctggtgcagacatctccatgattggacagtttggtgttggcttctattctgcctacc 45115657
Query: 622 tggtggcagagaaagtggttgtgatcacaaagcacaatgatgatgaacagtatgcctggg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45115658 tggtggcagagaaagtggttgtgatcacaaagcacaatgatgatgaacagtatgcctggg 45115717
Query: 682 agtcttctgctgggggctccttcacagttcgtgctgaccatggt 725
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45115718 agtcttctgctgggggctccttcacagttcgtgctgaccatggt 45115761
Score = 313 bits (158), Expect = 2e-82
Identities = 158/158 (100%)
Strand = Plus / Plus
Query: 1519 taaagcttggaatccatgaggactccactaatcggcggcgcctttctgagctgctgcgct 1578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45118023 taaagcttggaatccatgaggactccactaatcggcggcgcctttctgagctgctgcgct 45118082
Query: 1579 accatacctcccagtctggcgatgagatgacttctctctcagagtacgtctcacgcatga 1638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45118083 accatacctcccagtctggcgatgagatgacttctctctcagagtacgtctcacgcatga 45118142
Query: 1639 aggagacccagaagtccatctactatatcactggtgag 1676
||||||||||||||||||||||||||||||||||||||
Sbjct: 45118143 aggagacccagaagtccatctactatatcactggtgag 45118180
Score = 297 bits (150), Expect = 1e-77
Identities = 150/150 (100%)
Strand = Plus / Plus
Query: 208 agatgcctgaggaagtgcaccatggcgaggaggaagtggagacttttgccttccaggcag 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45114852 agatgcctgaggaagtgcaccatggcgaggaggaagtggagacttttgccttccaggcag 45114911
Query: 268 aaatcgcccagctcatgtctctcatcatcaataccttttattccaacaaggagatttttc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45114912 aaatcgcccagctcatgtctctcatcatcaataccttttattccaacaaggagatttttc 45114971
Query: 328 ttcgggagttgatcagtaatgcttctgatg 357
||||||||||||||||||||||||||||||
Sbjct: 45114972 ttcgggagttgatcagtaatgcttctgatg 45115001
Score = 268 bits (135), Expect = 1e-68
Identities = 135/135 (100%)
Strand = Plus / Plus
Query: 723 ggtgagcccattggccgaggtaccaaggtcattctgcatcttaaggaggaccagacagaa 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45115903 ggtgagcccattggccgaggtaccaaggtcattctgcatcttaaggaggaccagacagaa 45115962
Query: 783 tacttagaagagagacgggtgaaagaggtggtaaagaagcactcacagttcataggttat 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45115963 tacttagaagagagacgggtgaaagaggtggtaaagaagcactcacagttcataggttat 45116022
Query: 843 cccatcacactttat 857
|||||||||||||||
Sbjct: 45116023 cccatcacactttat 45116037
Score = 178 bits (90), Expect = 8e-42
Identities = 131/141 (92%), Gaps = 3/141 (2%)
Strand = Plus / Plus
Query: 1938 aggtgaccatctccnacaggcttgtgtctttcacctgttgcattgtgaccagccactatg 1997
|||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 45119108 aggtgaccatctccaacaggcttgtgtcttcaccctgttgcattgtgaccagcacctatg 45119167
Query: 1998 gctggacag-caacatggagcgcatcatgaaagctcaagcacttcgggac-actcgacca 2055
||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 45119168 gctggacagccaacatggagcgcatcatgaaagctcaggcacttcgggacaactcgacca 45119227
Query: 2056 tgggctac-tgatggccaaaa 2075
|||||||| ||||||||||||
Sbjct: 45119228 tgggctacatgatggccaaaa 45119248
Score = 117 bits (59), Expect = 3e-23
Identities = 159/191 (83%), Gaps = 1/191 (0%)
Strand = Plus / Plus
Query: 1671 ggtgagagcaaggagcaggttgccaactctgcgtttgtggagcgtgtgcggaagcggggt 1730
||||||| |||||| ||||| |||||||| || || ||||| ||| ||||||||| ||
Sbjct: 129759033 ggtgagaccaaggaccaggtggccaactcggccttcgtggaacgtctgcggaagcacggc 129759092
Query: 1731 ttcgaggtggtgtacatgacagagcccatcgacgagtactgtgtgcaacagctcaaggag 1790
| |||||| | ||||||| ||||||||||| |||||||||||||| ||||| ||||||
Sbjct: 129759093 ctggaggtgatctacatgatcgagcccatcgatgagtactgtgtgcagcagctgaaggag 129759152
Query: 1791 tttgatgggaagagcctggtctcagtta-caaggagggcctggagctgcctgaggatgag 1849
||||| ||||||| | | || ||||| | ||| |||||||||||||| || || |||||
Sbjct: 129759153 tttgaggggaagaccttagtgtcagtcaccaaagagggcctggagctcccggaagatgaa 129759212
Query: 1850 gaggagaagaa 1860
|||||||||||
Sbjct: 129759213 gaggagaagaa 129759223
>Sscrofa_Chr02
|| Length = 162569375
Score = 182 bits (92), Expect = 5e-43
Identities = 292/357 (81%), Gaps = 5/357 (1%)
Strand = Plus / Minus
Query: 1330 tcaacttcatccgcggtgtggttgactctgaagaccttcccctgaacatctcccgagaaa 1389
|||||||||||| |||||| ||| |||||||||| |||||| |||| |||||| |||||
Sbjct: 87696759 tcaacttcatccatggtgtgcttgcctctgaagactttccccggaacctctcccaagaaa 87696700
Query: 1390 tgctccagcagagcaagattttgaaggtcattcgtaaaaacattgttaagaagtgcctgg 1449
|||||||||||||| || ||||| || |||||||||||| |||| |||||||||||
Sbjct: 87696699 tgctccagcagagcccagttctgaagctctttcgtaaaaacacagttacgaagtgcctgg 87696640
Query: 1450 agctcttctctgagctggcagaagacaaggagaactacaagaaattctacgaggctttct 1509
||||||||||||||||||||||||||||| |||| |||||| |||| | || ||||
Sbjct: 87696639 cgctcttctctgagctggcagaagacaaggtgaacgccaagaacatctatgcagccttct 87696580
Query: 1510 caaaaaatctaaagcttggaatccatgaggactccactaatcggcggcgcctttctgagc 1569
|||||| || |||||||||| |||| ||||| || || |||||| | ||| | | ||||
Sbjct: 87696579 caaaaactcgaaagcttggactccacaaggacgcccctcatcggcagtgccctcccgagc 87696520
Query: 1570 tgctgcgctaccatacctcccagtctggcgatgagatgact----tctctctcagagtac 1625
|||||| |||||| | | | ||| || |||||||||||| ||||||||||||||
Sbjct: 87696519 tgctgcactaccacatcatctcgtccggagatgagatgactcctctctctctcagagtat 87696460
Query: 1626 gtctcacgcatgaaggagacccagaagtccatctactatatcactggtgagagcaag 1682
|||| |||||| ||||||||||| |||||| |||| ||||||||||||||||
Sbjct: 87696459 gtctttcgcatg-aggagacccaggcatccatcgactaccgcactggtgagagcaag 87696404
Score = 145 bits (73), Expect = 1e-31
Identities = 167/194 (86%), Gaps = 6/194 (3%)
Strand = Plus / Minus
Query: 1734 gaggtggtgtacatgacagagcccatcgacgagtactgtgtgcaacagc---tcaaggag 1790
|||||||||| ||||||| | |||| ||||||| ||| ||||| |||| |||||||
Sbjct: 87696376 gaggtggtgtgcatgacacatcccactgacgagtcctgcgtgcagcagcagctcaaggaa 87696317
Query: 1791 tttgatgggaagagcctggtctcagttac-aaggagggcctggagctgcctgaggatgag 1849
|||||||| ||||||||| | |||| ||| ||||||||||||||||||||||||||||||
Sbjct: 87696316 tttgatggcaagagcctgatttcagctaccaaggagggcctggagctgcctgaggatgag 87696257
Query: 1850 gaggagaagaaaaagatggaggagagcaagggccnag-ttgagaacctctgcaaactcat 1908
||||||| || ||| |||||||| |||| |||| || ||||||| ||||||||||||||
Sbjct: 87696256 gaggagaggaggaaggtggaggagggcaa-ggccaagtttgagaagctctgcaaactcat 87696198
Query: 1909 gaaagagatcttgg 1922
|||||| |||||||
Sbjct: 87696197 gaaagaaatcttgg 87696184
>Sscrofa_Chr05
|| Length = 111506441
Score = 61.9 bits (31), Expect = 1e-06
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 583 tgattggacagtttggtgttggcttctattctgcctacctggtggcagagaaagt 637
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Sbjct: 84079690 tgattggccagttcggtgttggcttctattctgccttccttgtagcagataaagt 84079636
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 63,626,085
Number of extensions: 674
Number of successful extensions: 674
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 667
Number of HSP's successfully gapped: 15
Length of query: 2075
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2053
Effective length of database: 2,808,408,574
Effective search space: 5765662802422
Effective search space used: 5765662802422
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)