Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001876
(991 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029219.1| 40S ribosomal protein S3 [Bos taurus]. 482 e-136
>ref|NP_001029219.1| 40S ribosomal protein S3 [Bos taurus].
Length = 243
Score = 482 bits (1240), Expect = e-136
Identities = 243/243 (100%), Positives = 243/243 (100%)
Frame = +1
Query: 49 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 228
MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 229 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 408
EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 409 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 588
GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG
Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180
Query: 589 VLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKPEPPAMPQPV 768
VLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKPEPPAMPQPV
Sbjct: 181 VLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKPEPPAMPQPV 240
Query: 769 PTA 777
PTA
Sbjct: 241 PTA 243
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,607,715
Number of extensions: 1242855
Number of successful extensions: 4764
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4723
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 227
Effective length of database: 14,273,310
Effective search space: 3240041370
Effective search space used: 3240041370
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001876
(991 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534008.1| PREDICTED: similar to 40S ribosomal protein S3 ... 480 e-136
Alignment gi|XP_860278.1| PREDICTED: similar to 40S ribosomal protein S3 ... 480 e-136
Alignment gi|XP_849947.1| PREDICTED: similar to 40S ribosomal protein S3 ... 480 e-136
Alignment gi|XP_860381.1| PREDICTED: similar to 40S ribosomal protein S3 ... 449 e-126
Alignment gi|XP_860415.1| PREDICTED: similar to 40S ribosomal protein S3 ... 382 e-106
Alignment gi|XP_860487.1| PREDICTED: similar to 40S ribosomal protein S3 ... 380 e-105
Alignment gi|XP_860451.1| PREDICTED: similar to 40S ribosomal protein S3 ... 350 9e-97
Alignment gi|XP_860346.1| PREDICTED: similar to 40S ribosomal protein S3 ... 146 9e-56
Alignment gi|XP_851416.1| PREDICTED: similar to 40S ribosomal protein S3 ... 171 1e-44
>ref|XP_534008.1| PREDICTED: similar to 40S ribosomal protein S3 isoform 1 [Canis
familiaris].
Length = 243
Score = 480 bits (1236), Expect = e-136
Identities = 242/243 (99%), Positives = 243/243 (100%)
Frame = +1
Query: 49 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 228
MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 229 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 408
EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 409 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 588
GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG
Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180
Query: 589 VLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKPEPPAMPQPV 768
VLGIKVKIMLPWDP+GKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKPEPPAMPQPV
Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKPEPPAMPQPV 240
Query: 769 PTA 777
PTA
Sbjct: 241 PTA 243
>ref|XP_860278.1| PREDICTED: similar to 40S ribosomal protein S3 isoform 4 [Canis
familiaris].
Length = 243
Score = 480 bits (1236), Expect = e-136
Identities = 242/243 (99%), Positives = 243/243 (100%)
Frame = +1
Query: 49 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 228
MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 229 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 408
EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 409 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 588
GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG
Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180
Query: 589 VLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKPEPPAMPQPV 768
VLGIKVKIMLPWDP+GKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKPEPPAMPQPV
Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKPEPPAMPQPV 240
Query: 769 PTA 777
PTA
Sbjct: 241 PTA 243
>ref|XP_849947.1| PREDICTED: similar to 40S ribosomal protein S3 isoform 3 [Canis
familiaris].
Length = 243
Score = 480 bits (1236), Expect = e-136
Identities = 242/243 (99%), Positives = 243/243 (100%)
Frame = +1
Query: 49 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 228
MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 229 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 408
EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 409 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 588
GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG
Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180
Query: 589 VLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKPEPPAMPQPV 768
VLGIKVKIMLPWDP+GKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKPEPPAMPQPV
Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKPEPPAMPQPV 240
Query: 769 PTA 777
PTA
Sbjct: 241 PTA 243
>ref|XP_860381.1| PREDICTED: similar to 40S ribosomal protein S3 isoform 6 [Canis
familiaris].
Length = 231
Score = 449 bits (1155), Expect = e-126
Identities = 230/243 (94%), Positives = 231/243 (95%)
Frame = +1
Query: 49 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 228
MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 229 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 408
EKGRRIRELTAVVQKRFGFPEGS LCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGS------------LCAIAQAESLRYKLLGGLAVRRACY 108
Query: 409 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 588
GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG
Sbjct: 109 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 168
Query: 589 VLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKPEPPAMPQPV 768
VLGIKVKIMLPWDP+GKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKPEPPAMPQPV
Sbjct: 169 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKPEPPAMPQPV 228
Query: 769 PTA 777
PTA
Sbjct: 229 PTA 231
>ref|XP_860415.1| PREDICTED: similar to 40S ribosomal protein S3 isoform 7 [Canis
familiaris].
Length = 196
Score = 382 bits (982), Expect = e-106
Identities = 190/193 (98%), Positives = 191/193 (98%)
Frame = +1
Query: 199 LATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLL 378
L RTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLL
Sbjct: 4 LGLRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLL 63
Query: 379 GGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDT 558
GGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDT
Sbjct: 64 GGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDT 123
Query: 559 AVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGK 738
AVRHVLLRQGVLGIKVKIMLPWDP+GKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGK
Sbjct: 124 AVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGK 183
Query: 739 PEPPAMPQPVPTA 777
PEPPAMPQPVPTA
Sbjct: 184 PEPPAMPQPVPTA 196
>ref|XP_860487.1| PREDICTED: similar to 40S ribosomal protein S3 isoform 9 [Canis
familiaris].
Length = 195
Score = 380 bits (975), Expect = e-105
Identities = 194/194 (100%), Positives = 194/194 (100%)
Frame = +1
Query: 49 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 228
MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 229 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 408
EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 409 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 588
GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG
Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180
Query: 589 VLGIKVKIMLPWDP 630
VLGIKVKIMLPWDP
Sbjct: 181 VLGIKVKIMLPWDP 194
>ref|XP_860451.1| PREDICTED: similar to 40S ribosomal protein S3 isoform 8 [Canis
familiaris].
Length = 191
Score = 350 bits (899), Expect = 9e-97
Identities = 180/180 (100%), Positives = 180/180 (100%)
Frame = +1
Query: 49 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 228
MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 229 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 408
EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 409 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 588
GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG
Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180
>ref|XP_860346.1| PREDICTED: similar to 40S ribosomal protein S3 isoform 5 [Canis
familiaris].
Length = 115
Score = 146 bits (368), Expect(2) = 9e-56
Identities = 76/76 (100%), Positives = 76/76 (100%)
Frame = +1
Query: 49 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 228
MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 229 EKGRRIRELTAVVQKR 276
EKGRRIRELTAVVQKR
Sbjct: 61 EKGRRIRELTAVVQKR 76
Score = 90.1 bits (222), Expect(2) = 9e-56
Identities = 36/41 (87%), Positives = 40/41 (97%)
Frame = +3
Query: 327 KRSVCHCPGRVSAIQTPRGPCCAEGLLWCAAVHHGEWGQRL 449
KRS+C+CPGRV+A+QTPR PCCAEGLLWCAAVHHGEWGQRL
Sbjct: 75 KRSMCYCPGRVTALQTPRRPCCAEGLLWCAAVHHGEWGQRL 115
>ref|XP_851416.1| PREDICTED: similar to 40S ribosomal protein S3 [Canis familiaris].
Length = 161
Score = 171 bits (432), Expect(2) = 1e-44
Identities = 107/191 (56%), Positives = 117/191 (61%)
Frame = +1
Query: 49 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 228
M VQ SKKR+FVADGIF+AELNEFLTRELAEDG S VEVRVTPT+ EIIIL TRTQNVLG
Sbjct: 1 MVVQTSKKRQFVADGIFRAELNEFLTRELAEDGDSRVEVRVTPTKPEIIILTTRTQNVLG 60
Query: 229 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 408
EK G C L + GGLAV+
Sbjct: 61 EKA-------------------------------GGCG----NGLLWFRRGGLAVQ---- 81
Query: 409 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 588
ESGAKG E +VSGKL+GQRAKS KFVD MIHS D VN+YVDT+V HVLLRQG
Sbjct: 82 -------ESGAKGYEAMVSGKLQGQRAKSAKFVDDSMIHSRDCVNHYVDTSVHHVLLRQG 134
Query: 589 VLGIKVKIMLP 621
VLG K + P
Sbjct: 135 VLGSKCRSCFP 145
Score = 28.1 bits (61), Expect(2) = 1e-44
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = +2
Query: 596 GSR*RSCCLGTQLVKLALRSRCL 664
GS+ RSC GTQ V LALRS L
Sbjct: 137 GSKCRSCFPGTQAVTLALRSLSL 159
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,180,831
Number of extensions: 1243734
Number of successful extensions: 4941
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4889
Number of HSP's successfully gapped: 11
Length of query: 330
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 227
Effective length of database: 15,440,896
Effective search space: 3505083392
Effective search space used: 3505083392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001876
(991 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000996.2| 40S ribosomal protein S3 [Homo sapiens]. 482 e-136
>ref|NP_000996.2| 40S ribosomal protein S3 [Homo sapiens].
Length = 243
Score = 482 bits (1240), Expect = e-136
Identities = 243/243 (100%), Positives = 243/243 (100%)
Frame = +1
Query: 49 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 228
MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 229 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 408
EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 409 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 588
GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG
Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180
Query: 589 VLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKPEPPAMPQPV 768
VLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKPEPPAMPQPV
Sbjct: 181 VLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKPEPPAMPQPV 240
Query: 769 PTA 777
PTA
Sbjct: 241 PTA 243
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,386,534
Number of extensions: 1222889
Number of successful extensions: 5145
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5086
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 227
Effective length of database: 14,901,872
Effective search space: 3382724944
Effective search space used: 3382724944
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001876
(991 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036182.1| 40S ribosomal protein S3 [Mus musculus]. 480 e-136
>ref|NP_036182.1| 40S ribosomal protein S3 [Mus musculus].
Length = 243
Score = 480 bits (1236), Expect = e-136
Identities = 242/243 (99%), Positives = 243/243 (100%)
Frame = +1
Query: 49 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 228
MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 229 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 408
EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 409 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 588
GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG
Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180
Query: 589 VLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKPEPPAMPQPV 768
VLGIKVKIMLPWDP+GKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKPEPPAMPQPV
Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKPEPPAMPQPV 240
Query: 769 PTA 777
PTA
Sbjct: 241 PTA 243
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,910,091
Number of extensions: 1028536
Number of successful extensions: 4266
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4186
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 228
Effective length of database: 12,553,887
Effective search space: 2862286236
Effective search space used: 2862286236
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001876
(991 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001038066.1| 40S ribosomal protein S3 [Sus scrofa]. 482 e-136
Alignment gi|XP_003357250.1| PREDICTED: kelch-like protein 12-like [Sus s... 104 9e-23
>ref|NP_001038066.1| 40S ribosomal protein S3 [Sus scrofa].
Length = 243
Score = 482 bits (1240), Expect = e-136
Identities = 243/243 (100%), Positives = 243/243 (100%)
Frame = +1
Query: 49 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 228
MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 229 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 408
EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 409 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 588
GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG
Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180
Query: 589 VLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKPEPPAMPQPV 768
VLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKPEPPAMPQPV
Sbjct: 181 VLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKPEPPAMPQPV 240
Query: 769 PTA 777
PTA
Sbjct: 241 PTA 243
>ref|XP_003357250.1| PREDICTED: kelch-like protein 12-like [Sus scrofa].
Length = 278
Score = 104 bits (259), Expect = 9e-23
Identities = 53/54 (98%), Positives = 54/54 (100%)
Frame = +1
Query: 49 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATR 210
MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEII+LATR
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIMLATR 54
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,184,809
Number of extensions: 851089
Number of successful extensions: 3157
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3131
Number of HSP's successfully gapped: 2
Length of query: 330
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 231
Effective length of database: 8,879,129
Effective search space: 2051078799
Effective search space used: 2051078799
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001876
(991 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr11 837 0.0
Sscrofa_Chr01 511 e-142
Sscrofa_Chr09 394 e-107
Sscrofa_Chr03 232 3e-58
Sscrofa_Chr07 220 1e-54
Sscrofa_Chr17 200 1e-48
>Sscrofa_Chr11
|| Length = 87690581
Score = 837 bits (422), Expect = 0.0
Identities = 711/807 (88%), Gaps = 19/807 (2%)
Strand = Plus / Minus
Query: 44 gcaagatggcggtgcagatttccaagaagaggaagtttgtcgctgatggcatcttcaaag 103
||||||||| |||||||||| ||||| | ||||| |||||| | |||||| ||| |||||
Sbjct: 39391802 gcaagatggaggtgcagattcccaaggaaaggaattttgtcaccgatggcctctacaaag 39391743
Query: 104 ctgaactgaatgaatttcttacgcgggagctggctgaagatgggtactccggagttgaag 163
|||||||||||||||||||||| || |||| ||| ||||||||||||| ||||||||||
Sbjct: 39391742 ctgaactgaatgaatttcttacttggtagctagctcaagatgggtactctggagttgaag 39391683
Query: 164 ttcgagttacaccaactaggacagaaatcattatcttggccaccaggacacagaatgttc 223
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 39391682 tttgagttacaccaactaggacagaaatcattatcttggccaccaggacacagaatattc 39391623
Query: 224 ttggtgagaagggccggcggatccgggaattgactgctgtggttcagaagagatttggct 283
||||||||||| || || |||| |||||| |||||| ||||||| |||||||||||||
Sbjct: 39391622 ttggtgagaagagctggaagatctgggaatagactgccatggttcataagagatttggct 39391563
Query: 284 tccctgagggcagtgtagagctttatgcagaaaaagtggccacaagaggtctgtgtgcca 343
||||||||| |||||||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct: 39391562 tccctgaggacagtgtagagctttatctggaaaaggtggctgcaagaggtctgtgtgcca 39391503
Query: 344 ttgcccaggcagagtctctgcgatacaaactcctcgggggccttgctgtgcggagggcct 403
| ||||||||| | ||||||| |||||||| ||| | |||||||||||| |||||||||
Sbjct: 39391502 t-gcccaggcaaaatctctgccttacaaacttctcagaggccttgctgtgtggagggcct 39391444
Query: 404 gctatggtgtgctgcggttcatcatggagagtggggccaaaggctgcgaggtcgtggtgt 463
| ||||||||| || |||||||||||||| ||||||||||||||| ||||| |||||||
Sbjct: 39391443 gttatggtgtgtggcagttcatcatggagaatggggccaaaggctgtgaggttgtggtgt 39391384
Query: 464 ctgggaaacttcgaggacagagagctaaatccatgaagtttgtggatggcttgatgatcc 523
|||||||||| | |||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 39391383 ctgggaaactccaaggacagagaactaaagccatgaagtttgtggatggcttgatgatcc 39391324
Query: 524 acagtggggaccctgttaactactacgttgacaccgccgtgcgccatgtgctgctcagac 583
|||||||||||||||||||| |||| ||||| || ||| ||| ||||||||||||||||
Sbjct: 39391323 acagtggggaccctgttaaccactatgttgatactgccttgcaccatgtgctgctcagag 39391264
Query: 584 agggtgtgctggggatcaaggtaaagatcatgctgccttgggacccaactggtaaaattg 643
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct: 39391263 agggtgtgctggggatcaaggtaaagatcatgctgccttgggacccaatgggtaagatgg 39391204
Query: 644 gccctaagaagccgctgcctgaccacgtgagcattgtggaacccaaagatgaaatactgc 703
||||||||||||| ||| |||| || |||| |||||||||||||||||||||||||||||
Sbjct: 39391203 gccctaagaagcccctgtctgagcatgtgaccattgtggaacccaaagatgaaatactgc 39391144
Query: 704 ccaccacccccatctccgaacagaagggtgggaagccagagccacccgccatgccccagc 763
|| |||||||||| | ||||||||||||||| ||||| |||||| |
Sbjct: 39391143 cc----cccccatctctggacagaagggtgggaatccaga------------gccccaac 39391100
Query: 764 cagtacccacagcataatagggtctccttggcagctggatctggagtctggatgttgttc 823
| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 39391099 aattacccacagcataatagggtctccttggcagctg--tctggagtctggatgctgttc 39391042
Query: 824 tgtaaagacatttaataaaatcttttc 850
||||| ||||||||||||||| |||||
Sbjct: 39391041 tgtaatgacatttaataaaatgttttc 39391015
>Sscrofa_Chr01
|| Length = 315321322
Score = 511 bits (258), Expect = e-142
Identities = 574/680 (84%), Gaps = 27/680 (3%)
Strand = Plus / Minus
Query: 190 atcattatcttggccaccaggacacagaatgttcttggtgagaagggccggcggatccgg 249
||||||||| ||||||| |||||| |||||||||||||||||||||||| ||||||| ||
Sbjct: 284017257 atcattatcatggccactaggacatagaatgttcttggtgagaagggccagcggatctgg 284017198
Query: 250 gaattgactgctgtggttcagaagagatttggcttccctgagggcagtgtagagctttat 309
|||||| ||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 284017197 acattgaccactgtggttcagaagagatttggcttccctgaggacaatgtagagctttat 284017138
Query: 310 gcagaaaaagtggccacaagaggtctgtgtgccattgcccaggcagagtctctgcgatac 369
|| || | ||||||||||||||||| ||||| |||||||||||| ||| | | ||
Sbjct: 284017137 gctgagacgttggccacaagaggtctgcatgccactgcccaggcagaatctttacattat 284017078
Query: 370 aaactcctcgggggccttgctgtgcggagggcctgctatggtgtgc--tgcggttcatca 427
||||||||||| |||||||| || || |||||||| | |||||| || || |||||
Sbjct: 284017077 aaactcctcggaggccttgcggtatagaaggcctgctgtagtgtgcgatggtgtccatca 284017018
Query: 428 tggagagtggggccaaaggctgcg-----aggtcgtggtgtctgggaaacttcgaggaca 482
|||| ||||||||| ||||| | ||||| |||||| | || |||| |||||||
Sbjct: 284017017 cagagaatggggccaagggctgggctatgaggtcatggtgtttaggcaactatgaggaca 284016958
Query: 483 gagagctaaatccatgaagtttgtggatggcttgatgatccacagtggggaccctgttaa 542
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 284016957 gagagctaaatccatgaagtttgtggatggcttgatgatccaccgtggagaccctgttag 284016898
Query: 543 ctactacgttgacaccgccgtgcgccatgtgctgctcagacagggtgtgctg-------- 594
|||||| || |||| ||| ||| ||||||||||||||||||||||||||||
Sbjct: 284016897 ctactatgtcaacactgccatgccccatgtgctgctcagacagggtgtgctgctcagact 284016838
Query: 595 ----------gggatcaaggtaaagatcatgctgccttgggacccaactggtaaaattgg 644
|| ||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 284016837 gggtgtgctgggcatcaaggtaaagatcatgctgccttgggacccaactggtaagacggg 284016778
Query: 645 ccctaagaagccgctgcctgaccacgtgagcattgtggaacccaaagatgaaatactgcc 704
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284016777 ccctaagaagcccctgcctgaccacgtgagcattgtggaacccaaagatgaaatactgct 284016718
Query: 705 caccacccccatctccgaacagaagggtgggaagccagagccacccgccatgccccagcc 764
||| | ||||||||| ||||| |||||||||||||| |||| || ||||||||||||||
Sbjct: 284016717 cactatgcccatctccaaacag-agggtgggaagcca-agccgcctgccatgccccagcc 284016660
Query: 765 agtacccacagcataatagggtctccttggcagctggatctggagtctggatgttgttct 824
|||| ||| |||| || | |||||||||| ||||| ||||||||||||||| |||| |||
Sbjct: 284016659 agtaaccaaagcagaaaaaggtctccttgacagctagatctggagtctggaagttgctct 284016600
Query: 825 gtaaagacatttaataaaat 844
||||||| |||||||||||
Sbjct: 284016599 ataaagacctttaataaaat 284016580
>Sscrofa_Chr09
|| Length = 153670197
Score = 394 bits (199), Expect = e-107
Identities = 199/199 (100%)
Strand = Plus / Plus
Query: 586 ggtgtgctggggatcaaggtaaagatcatgctgccttgggacccaactggtaaaattggc 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10817933 ggtgtgctggggatcaaggtaaagatcatgctgccttgggacccaactggtaaaattggc 10817992
Query: 646 cctaagaagccgctgcctgaccacgtgagcattgtggaacccaaagatgaaatactgccc 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10817993 cctaagaagccgctgcctgaccacgtgagcattgtggaacccaaagatgaaatactgccc 10818052
Query: 706 accacccccatctccgaacagaagggtgggaagccagagccacccgccatgccccagcca 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10818053 accacccccatctccgaacagaagggtgggaagccagagccacccgccatgccccagcca 10818112
Query: 766 gtacccacagcataatagg 784
|||||||||||||||||||
Sbjct: 10818113 gtacccacagcataatagg 10818131
Score = 375 bits (189), Expect = e-101
Identities = 192/193 (99%)
Strand = Plus / Plus
Query: 397 agggcctgctatggtgtgctgcggttcatcatggagagtggggccaaaggctgcgaggtc 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10817289 agggcctgctatggtgtgctgcggttcatcatggagagtggggccaaaggctgcgaggtc 10817348
Query: 457 gtggtgtctgggaaacttcgaggacagagagctaaatccatgaagtttgtggatggcttg 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 10817349 gtggtgtctgggaaacttcgaggacagagagctaaatccatgaagtttgtggatggcgtg 10817408
Query: 517 atgatccacagtggggaccctgttaactactacgttgacaccgccgtgcgccatgtgctg 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10817409 atgatccacagtggggaccctgttaactactacgttgacaccgccgtgcgccatgtgctg 10817468
Query: 577 ctcagacagggtg 589
|||||||||||||
Sbjct: 10817469 ctcagacagggtg 10817481
Score = 250 bits (126), Expect = 1e-63
Identities = 132/134 (98%)
Strand = Plus / Minus
Query: 77 agtttgtcgctgatggcatcttcaaagctgaactgaatgaatttcttacgcgggagctgg 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10632420 agtttgtcgctgatggcatcttcaaagctgaactgaatgaatttcttacgcgggagctgg 10632361
Query: 137 ctgaagatgggtactccggagttgaagttcgagttacaccaactaggacagaaatcatta 196
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 10632360 ctgaagatgggtactccggagttgaagttcgagttacaccaactaggacagaaatcataa 10632301
Query: 197 tcttggccaccagg 210
| ||||||||||||
Sbjct: 10632300 tgttggccaccagg 10632287
Score = 194 bits (98), Expect = 6e-47
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 206 ccaggacacagaatgttcttggtgagaagggccggcggatccgggaattgactgctgtgg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10815318 ccaggacacagaatgttcttggtgagaagggccggcggatccgggaattgactgctgtgg 10815377
Query: 266 ttcagaagagatttggcttccctgagggcagtgtagag 303
||||||||||||||||||||||||||||||||||||||
Sbjct: 10815378 ttcagaagagatttggcttccctgagggcagtgtagag 10815415
Score = 194 bits (98), Expect = 6e-47
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 302 agctttatgcagaaaaagtggccacaagaggtctgtgtgccattgcccaggcagagtctc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10815842 agctttatgcagaaaaagtggccacaagaggtctgtgtgccattgcccaggcagagtctc 10815901
Query: 362 tgcgatacaaactcctcgggggccttgctgtgcggagg 399
||||||||||||||||||||||||||||||||||||||
Sbjct: 10815902 tgcgatacaaactcctcgggggccttgctgtgcggagg 10815939
Score = 149 bits (75), Expect = 3e-33
Identities = 88/91 (96%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 902 tggagcctgtgactcattta-cccagtattgtgttgggaggggcatttgcctttggtctg 960
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 10818253 tggagcctgggactcatttaacccagtattgtgttgggaggggcatttgcctttggtctg 10818312
Query: 961 agaagttcctgcccttgccactgtgtgtgaa 991
|||||||||||| ||||||||||||||||||
Sbjct: 10818313 agaagttcctgcacttgccactgtgtgtgaa 10818343
Score = 137 bits (69), Expect = 1e-29
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 782 agggtctccttggcagctggatctggagtctggatgttgttctgtaaagacatttaataa 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10818545 agggtctccttggcagctggatctggagtctggatgttgttctgtaaagacatttaataa 10818604
Query: 842 aatcttttc 850
|||||||||
Sbjct: 10818605 aatcttttc 10818613
Score = 119 bits (60), Expect = 3e-24
Identities = 60/60 (100%)
Strand = Plus / Minus
Query: 19 ccttttctttcggctgcgcgcggcggcaagatggcggtgcagatttccaagaagaggaag 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10633630 ccttttctttcggctgcgcgcggcggcaagatggcggtgcagatttccaagaagaggaag 10633571
>Sscrofa_Chr03
|| Length = 144787322
Score = 232 bits (117), Expect = 3e-58
Identities = 187/211 (88%), Gaps = 7/211 (3%)
Strand = Plus / Plus
Query: 640 attggccctaagaagccgctgcctgaccacgtgagcattgtggaacccaaagatgaaata 699
||||||||||||||||| ||||||||| ||||||||||||||||||| | ||
Sbjct: 52386485 attggccctaagaagcccctgcctgactttgtgagcattgtggaacccagatat------ 52386538
Query: 700 ctgcccaccacccccatctccgaacagaagggtgggaagccagagccacccgccatgccc 759
|||||| |||| ||||||||| ||||||| ||||||||| ||| ||||| |||||||||
Sbjct: 52386539 -tgcccatcacctccatctccggacagaagtgtgggaagcaagatccacctgccatgccc 52386597
Query: 760 cagccagtacccacagcataatagggtctccttggcagctggatctggagtctggatgtt 819
||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 52386598 cagccggtacccacagcataatagggtgtccttggcagctggatctggagtctgcatgtt 52386657
Query: 820 gttctgtaaagacatttaataaaatcttttc 850
||||||||||||| |||||||||||||||||
Sbjct: 52386658 gttctgtaaagacctttaataaaatcttttc 52386688
Score = 117 bits (59), Expect = 1e-23
Identities = 120/139 (86%), Gaps = 1/139 (0%)
Strand = Plus / Minus
Query: 711 ccccatctccgaacagaagggtgggaagccagagccacccgccatgccccagccagtacc 770
|||||||||| ||||| ||| |||| ||||| |||||| || |||||||| ||||||
Sbjct: 57642802 ccccatctcccaacaggaggttgggcagccacagccacttacc-tgccccaggtagtacc 57642744
Query: 771 cacagcataatagggtctccttggcagctggatctggagtctggatgttgttctgtaaag 830
||||||| || |||||||||||||||||||||||||||||| ||||||| ||| |||||
Sbjct: 57642743 cacagcaaaacagggtctccttggcagctggatctggagtccagatgttgctctataaag 57642684
Query: 831 acatttaataaaatctttt 849
|| ||||||||||| ||||
Sbjct: 57642683 acctttaataaaatttttt 57642665
Score = 83.8 bits (42), Expect = 2e-13
Identities = 108/130 (83%)
Strand = Plus / Minus
Query: 167 gagttacaccaactaggacagaaatcattatcttggccaccaggacacagaatgttcttg 226
||||||||||||| | |||||||||||||||| |||||| ||||| || ||||||||||
Sbjct: 110595204 gagttacaccaaccaagacagaaatcattatcctggccatcaggatgcaaaatgttcttg 110595145
Query: 227 gtgagaagggccggcggatccgggaattgactgctgtggttcagaagagatttggcttcc 286
||||||| ||| | ||||| | ||| | | || ||||||||| |||||| ||||||
Sbjct: 110595144 gtgagaaaggcagaaggatctgcacattcatttctaaggttcagaaaagatttcgcttcc 110595085
Query: 287 ctgagggcag 296
||||||||||
Sbjct: 110595084 ctgagggcag 110595075
Score = 60.0 bits (30), Expect = 2e-06
Identities = 66/78 (84%)
Strand = Plus / Minus
Query: 579 cagacagggtgtgctggggatcaaggtaaagatcatgctgccttgggacccaactggtaa 638
|||||||||||||||||| |||| | ||||||||| |||| |||| |||| ||||||
Sbjct: 110594815 cagacagggtgtgctgggcatcagcatgaagatcatgttgccgtgggccccatgtggtaa 110594756
Query: 639 aattggccctaagaagcc 656
| |||||||||||||||
Sbjct: 110594755 gactggccctaagaagcc 110594738
>Sscrofa_Chr07
|| Length = 134764511
Score = 220 bits (111), Expect = 1e-54
Identities = 388/477 (81%), Gaps = 10/477 (2%)
Strand = Plus / Plus
Query: 149 actccggagttgaagttcgagttacaccaactaggacagaaatcattatcttggccacca 208
|||| ||||||||||| | |||||||||| |||||||| |||||||||||| | |||
Sbjct: 43025944 actctggagttgaagtctgccttacaccaaccgggacagaagtcattatcttggtctcca 43026003
Query: 209 ggacacagaatgttcttggtgagaagggccggcggatccgggaattgactgctgtggttc 268
|||| ||||||||||||| ||||||| || || |||||| ||||||||| ||||| |||
Sbjct: 43026004 ggacccagaatgttcttgatgagaagtgctggtggatccaggaattgaccactgtgcttc 43026063
Query: 269 agaagagatttggcttccctgagggcagtgtagagctttatgcagaaaaagtggccacaa 328
||||||| ||||||| ||||| ||||| ||||||||||||||| ||||| ||| |
Sbjct: 43026064 agaagaggtttggctcccctgggggcactgtagagctttatgctgaaaa---ggc----a 43026116
Query: 329 gaggtctgtgtgccattgcccaggcagagtctctgcgatacaaactcctcgggggccttg 388
||| |||||||||||| | ||||||| ||||| | || | ||||| || || ||||
Sbjct: 43026117 gagctctgtgtgccatcacataggcagaacctctgtgttataggctcctgggagggcttg 43026176
Query: 389 ctgtgcggagggcctgctatggtgtgctgcggttcatcatggagagtggggccaaaggct 448
|||||| || || ||||| ||||||||| || || || | || ||||||||| ||||
Sbjct: 43026177 ctgtgccgaaggactgctccggtgtgctgtggctcctcctagaatgtggggccatgggct 43026236
Query: 449 gcgaggtcgtggtgtctgggaaacttcgaggacagagagctaaatccatgaagtttgtgg 508
|| ||||||||| | ||| | || | ||||||||||| | ||| ||||||||||||||||
Sbjct: 43026237 gctaggtcgtggagcctgag-aagtccgaggacagagggttaagtccatgaagtttgtgg 43026295
Query: 509 atggcttgatgatccacagtggggaccctgttaactactacgttgacaccgccgtgcgcc 568
||||| ||||||||||| ||| ||||| |||||||| ||||| || || ||| | |||
Sbjct: 43026296 atggcctgatgatccaccgtgtggaccatgttaactcctacgcagatactgccat--gcc 43026353
Query: 569 atgtgctgctcagacagggtgtgctggggatcaaggtaaagatcatgctgccttggg 625
| |||||||||||||||||||||||| ||||| || |||||||||||||| ||||
Sbjct: 43026354 ttatgctgctcagacagggtgtgctggccatcaaagtgaagatcatgctgccgtggg 43026410
Score = 77.8 bits (39), Expect = 1e-11
Identities = 79/91 (86%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 759 ccagccagtacccacagcataatagggtctccttggcagctggatctggagtctggatgt 818
|||||||| ||||||||| || ||||||||||||||||||||||||| ||| |||||||
Sbjct: 43026524 ccagccagcccccacagcaaaacagggtctccttggcagctggatctgaagtttggatgt 43026583
Query: 819 t-gttctgtaaagacatttaataaaatcttt 848
| ||| ||||||| ||||||| |||||||
Sbjct: 43026584 taactctttaaagacctttaatacaatcttt 43026614
>Sscrofa_Chr17
|| Length = 69701581
Score = 200 bits (101), Expect = 1e-48
Identities = 366/450 (81%), Gaps = 7/450 (1%)
Strand = Plus / Plus
Query: 174 accaactaggacagaaatcattatcttggccaccaggac----acagaatgttcttggtg 229
|||||| |||||||||||||||| ||||||| |||||| ||||||||| |||||||
Sbjct: 47008210 accaaccaggacagaaatcattaccttggcctccaggatgcagacagaatgtccttggtg 47008269
Query: 230 agaagggccggcggatccgggaattgactgctgtggttcagaagagatttggcttccctg 289
||||| || | |||||| ||||||||| || |||||||||| |||||||||||||
Sbjct: 47008270 agaagaacctgtggatcctggaattgaccaacgtagttcagaagaagtttggcttccctg 47008329
Query: 290 agggcagtgtagagctttatgcagaaaaagtggccacaagaggtctgtgtgccattgccc 349
| ||| |||||||||||| | | | ||| ||||| | ||||||||||||||| ||| ||
Sbjct: 47008330 aaggctgtgtagagcttt-tcctggaaaggtggctgccagaggtctgtgtgcctttgtcc 47008388
Query: 350 aggcagagtctctgcgatacaaactcctcgggggccttgctgtgcggagggcctgctatg 409
|| |||||||||| | ||||||||| || || |||||| || ||| ||| |||||
Sbjct: 47008389 agatggagtctctgcattgcaaactcctaggagggcttgctaggcagagc-cctactatg 47008447
Query: 410 gtgtgctgcggttcatcatggagagtggggccaaaggctgcgaggtcgt-ggtgtctggg 468
| |||||| |||||||||||||||||||||||| |||| | | || | |||||| |||
Sbjct: 47008448 ggatgctgcagttcatcatggagagtggggccaagggctacaggatcatgggtgtcaggg 47008507
Query: 469 aaacttcgaggacagagagctaaatccatgaagtttgtggatggcttgatgatccacagt 528
||||| | ||||||||| || ||||||||||||||| ||||||| ||||||||||||||
Sbjct: 47008508 aaactccaaggacagagggccaaatccatgaagtttctggatggtgtgatgatccacagt 47008567
Query: 529 ggggaccctgttaactactacgttgacaccgccgtgcgccatgtgctgctcagacagggt 588
| ||| ||||||||||||||| |||| |||| | || |||| | || |||||| | | |
Sbjct: 47008568 gaggatcctgttaactactacattgataccgtcatgtgccacatactactcagatatgct 47008627
Query: 589 gtgctggggatcaaggtaaagatcatgctg 618
|||||||| |||| || ||||||||||||
Sbjct: 47008628 gtgctgggcatcacagtgaagatcatgctg 47008657
Score = 60.0 bits (30), Expect = 2e-06
Identities = 48/53 (90%), Gaps = 2/53 (3%)
Strand = Plus / Minus
Query: 782 agggtctccttggcagctggatct--ggagtctggatgttgttctgtaaagac 832
||||||||||||||||||| |||| ||||||| | |||||||||||||||||
Sbjct: 14386606 agggtctccttggcagctgaatctctggagtctaggtgttgttctgtaaagac 14386554
Score = 60.0 bits (30), Expect = 2e-06
Identities = 48/53 (90%), Gaps = 2/53 (3%)
Strand = Plus / Minus
Query: 782 agggtctccttggcagctggatct--ggagtctggatgttgttctgtaaagac 832
||||||||||||||||||| |||| ||||||| | |||||||||||||||||
Sbjct: 16222693 agggtctccttggcagctgaatctctggagtctaggtgttgttctgtaaagac 16222641
Score = 60.0 bits (30), Expect = 2e-06
Identities = 48/53 (90%), Gaps = 2/53 (3%)
Strand = Plus / Minus
Query: 782 agggtctccttggcagctggatct--ggagtctggatgttgttctgtaaagac 832
||||||||||||||||||| |||| ||||||| | |||||||||||||||||
Sbjct: 16375052 agggtctccttggcagctgaatctctggagtctaggtgttgttctgtaaagac 16375000
Score = 58.0 bits (29), Expect = 1e-05
Identities = 53/60 (88%), Gaps = 2/60 (3%)
Strand = Plus / Plus
Query: 788 tccttggcagctggatct--ggagtctggatgttgttctgtaaagacatttaataaaatc 845
|||||||||||| ||||| ||||||||||||||| |||||| |||| || |||||||||
Sbjct: 14443510 tccttggcagctagatctctggagtctggatgttgctctgtacagaccttgaataaaatc 14443569
Score = 58.0 bits (29), Expect = 1e-05
Identities = 53/60 (88%), Gaps = 2/60 (3%)
Strand = Plus / Minus
Query: 788 tccttggcagctggatct--ggagtctggatgttgttctgtaaagacatttaataaaatc 845
|||||||||||||||||| ||||||||||||||| |||||| |||| || |||| ||||
Sbjct: 16151120 tccttggcagctggatctctggagtctggatgttgctctgtacagaccttgaatagaatc 16151061
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,150,065
Number of extensions: 194
Number of successful extensions: 194
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 31
Length of query: 991
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 970
Effective length of database: 2,808,413,156
Effective search space: 2724160761320
Effective search space used: 2724160761320
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)