Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001878
(1121 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039614.1| transgelin [Bos taurus]. 407 e-114
Alignment gi|NP_001029671.1| transgelin-3 [Bos taurus]. 281 1e-75
Alignment gi|NP_001013617.1| transgelin-2 [Bos taurus]. 272 3e-73
Alignment gi|XP_002690168.1| PREDICTED: transgelin 2-like [Bos taurus]. 234 1e-61
Alignment gi|XP_582214.3| PREDICTED: transgelin 2 [Bos taurus]. 234 1e-61
Alignment gi|NP_001033268.1| calponin-3 [Bos taurus]. 147 1e-35
Alignment gi|XP_002686086.1| PREDICTED: calponin 3-like [Bos taurus]. 147 2e-35
Alignment gi|XP_001254702.1| PREDICTED: calponin 3 isoform 1 [Bos taurus]. 147 2e-35
Alignment gi|NP_001039844.1| calponin-1 [Bos taurus]. 139 3e-33
Alignment gi|NP_001030497.1| calponin-2 [Bos taurus]. 130 2e-30
>ref|NP_001039614.1| transgelin [Bos taurus].
Length = 201
Score = 407 bits (1047), Expect = e-114
Identities = 199/201 (99%), Positives = 201/201 (100%)
Frame = +1
Query: 73 MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
MANKGPSYGMSREVQSKIEKKYDEELEERLVEWI++QCGPDVGRPDRGRLGFQVWLKNGV
Sbjct: 1 MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIVMQCGPDVGRPDRGRLGFQVWLKNGV 60
Query: 253 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG 432
ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG
Sbjct: 61 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG 120
Query: 433 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 612
KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG
Sbjct: 121 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 180
Query: 613 SNRGASQAGMTGYGRPRQIIS 675
SNRGASQAGMTGYGRPRQIIS
Sbjct: 181 SNRGASQAGMTGYGRPRQIIS 201
>ref|NP_001029671.1| transgelin-3 [Bos taurus].
Length = 199
Score = 281 bits (718), Expect = 1e-75
Identities = 135/201 (67%), Positives = 170/201 (84%), Gaps = 1/201 (0%)
Frame = +1
Query: 73 MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
MAN+GPSYG+SREVQ KIE+KYD +LE +LV+WII+QC D+ P GR FQ WL +G
Sbjct: 1 MANRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRAHFQKWLMDGT 60
Query: 253 ILSKLVNSLYPDGSKPV-KVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFE 429
+L KL+NSLYP G +P+ K+ E+ M FKQMEQ++QFLKAAE YGV TD+FQTVDL+E
Sbjct: 61 VLCKLINSLYPPGQEPIPKISES--KMAFKQMEQISQFLKAAEIYGVRTTDIFQTVDLWE 118
Query: 430 GKDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQM 609
GKD+AAVQRTLMALGS+AVTK+DG YRG+P+WF +KAQ+++R F+E QL++G++VIGLQM
Sbjct: 119 GKDMAAVQRTLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQM 178
Query: 610 GSNRGASQAGMTGYGRPRQII 672
GSN+GASQAGMTGYG PRQI+
Sbjct: 179 GSNKGASQAGMTGYGMPRQIM 199
>ref|NP_001013617.1| transgelin-2 [Bos taurus].
Length = 199
Score = 272 bits (696), Expect = 3e-73
Identities = 129/200 (64%), Positives = 164/200 (82%)
Frame = +1
Query: 73 MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
MAN+GP+YG+SREVQ KIEK+YD +LE+ L++WI QC DVGRP GR FQ WLK+G
Sbjct: 1 MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 60
Query: 253 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG 432
+L +L+N LYP+G PVK + +M FKQMEQ++QFL+AAE YG+ TD+FQTVDL+EG
Sbjct: 61 VLCELINGLYPEGQAPVKKIQ-ASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEG 119
Query: 433 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 612
K++A VQRTLM LG LAV ++DG + GDPNWF KK++E+ R F+++QLQEGK+VIGLQMG
Sbjct: 120 KNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRYFSDNQLQEGKNVIGLQMG 179
Query: 613 SNRGASQAGMTGYGRPRQII 672
+NRGASQAGMTGYG PRQI+
Sbjct: 180 TNRGASQAGMTGYGMPRQIL 199
>ref|XP_002690168.1| PREDICTED: transgelin 2-like [Bos taurus].
Length = 199
Score = 234 bits (597), Expect = 1e-61
Identities = 112/200 (56%), Positives = 149/200 (74%)
Frame = +1
Query: 73 MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
MAN+GP+YG+S+EVQ KI+K+YD +LE+ L++WI QC V RP G FQ WLK+G
Sbjct: 1 MANRGPAYGLSQEVQQKIDKQYDADLEQILIQWITTQCRKHVSRPQPGCTNFQNWLKDGT 60
Query: 253 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG 432
+L +L+N LYP+G PVK + + FKQM Q++QFL+AAE YG+ D+ QTVDL+EG
Sbjct: 61 VLCELINGLYPEGQAPVKKIQ-ASTTAFKQMGQISQFLQAAERYGINTNDISQTVDLWEG 119
Query: 433 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 612
K++A VQRTLM LG L V +DG + GDPNWF KK++E+ R F ++QLQEGK++ GLQMG
Sbjct: 120 KNMACVQRTLMNLGRLVVAWDDGLFSGDPNWFTKKSKENPRYFPDNQLQEGKNLFGLQMG 179
Query: 613 SNRGASQAGMTGYGRPRQII 672
+N GASQAG+T Y P QI+
Sbjct: 180 TNHGASQAGLTDYAMPCQIL 199
>ref|XP_582214.3| PREDICTED: transgelin 2 [Bos taurus].
Length = 199
Score = 234 bits (597), Expect = 1e-61
Identities = 112/200 (56%), Positives = 149/200 (74%)
Frame = +1
Query: 73 MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
MAN+GP+YG+S+EVQ KI+K+YD +LE+ L++WI QC V RP G FQ WLK+G
Sbjct: 1 MANRGPAYGLSQEVQQKIDKQYDADLEQILIQWITTQCRKHVSRPQPGCTNFQNWLKDGT 60
Query: 253 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG 432
+L +L+N LYP+G PVK + + FKQM Q++QFL+AAE YG+ D+ QTVDL+EG
Sbjct: 61 VLCELINGLYPEGQAPVKKIQ-ASTTAFKQMGQISQFLQAAERYGINTNDISQTVDLWEG 119
Query: 433 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 612
K++A VQRTLM LG L V +DG + GDPNWF KK++E+ R F ++QLQEGK++ GLQMG
Sbjct: 120 KNMACVQRTLMNLGRLVVAWDDGLFSGDPNWFTKKSKENPRYFPDNQLQEGKNLFGLQMG 179
Query: 613 SNRGASQAGMTGYGRPRQII 672
+N GASQAG+T Y P QI+
Sbjct: 180 TNHGASQAGLTDYAMPCQIL 199
>ref|NP_001033268.1| calponin-3 [Bos taurus].
Length = 329
Score = 147 bits (372), Expect = 1e-35
Identities = 85/197 (43%), Positives = 118/197 (59%)
Frame = +1
Query: 79 NKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVIL 258
NKGPSYG+S EV++KI KYD + EE L WI G +G FQ+ LK+G+IL
Sbjct: 5 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGA------NFQLGLKDGIIL 58
Query: 259 SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKD 438
+L+N L P K V N S+ + Q+E + F+KA + YG+ D+F+ DLFE +
Sbjct: 59 CELINKLQPGSVKKV----NESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGN 114
Query: 439 LAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 618
+ VQ TL+AL LA TK + + +K A++ R F E +L+ G+ VIGLQMG+N
Sbjct: 115 MTQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTN 171
Query: 619 RGASQAGMTGYGRPRQI 669
+ ASQAGMT YG R +
Sbjct: 172 KCASQAGMTAYGTRRHL 188
>ref|XP_002686086.1| PREDICTED: calponin 3-like [Bos taurus].
Length = 329
Score = 147 bits (370), Expect = 2e-35
Identities = 85/197 (43%), Positives = 118/197 (59%)
Frame = +1
Query: 79 NKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVIL 258
NKGPSYG+S EV++KI KYD + EE L WI G +G FQ+ LK+G+IL
Sbjct: 5 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGA------NFQLGLKDGIIL 58
Query: 259 SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKD 438
+L+N L P K V N S+ + Q+E + F+KA + YG+ D+F+ DLFE +
Sbjct: 59 CELINKLQPGPVKKV----NESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGN 114
Query: 439 LAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 618
+ VQ TL+AL LA TK + + +K A++ R F E +L+ G+ VIGLQMG+N
Sbjct: 115 MTQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTN 171
Query: 619 RGASQAGMTGYGRPRQI 669
+ ASQAGMT YG R +
Sbjct: 172 KCASQAGMTAYGTRRHL 188
>ref|XP_001254702.1| PREDICTED: calponin 3 isoform 1 [Bos taurus].
Length = 329
Score = 147 bits (370), Expect = 2e-35
Identities = 85/197 (43%), Positives = 118/197 (59%)
Frame = +1
Query: 79 NKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVIL 258
NKGPSYG+S EV++KI KYD + EE L WI G +G FQ+ LK+G+IL
Sbjct: 5 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGA------NFQLGLKDGIIL 58
Query: 259 SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKD 438
+L+N L P K V N S+ + Q+E + F+KA + YG+ D+F+ DLFE +
Sbjct: 59 CELINKLQPGPVKKV----NESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGN 114
Query: 439 LAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 618
+ VQ TL+AL LA TK + + +K A++ R F E +L+ G+ VIGLQMG+N
Sbjct: 115 MTQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTN 171
Query: 619 RGASQAGMTGYGRPRQI 669
+ ASQAGMT YG R +
Sbjct: 172 KCASQAGMTAYGTRRHL 188
>ref|NP_001039844.1| calponin-1 [Bos taurus].
Length = 297
Score = 139 bits (351), Expect = 3e-33
Identities = 79/197 (40%), Positives = 116/197 (58%)
Frame = +1
Query: 79 NKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVIL 258
N+GP+YG+S EV++K+ +KYD + E+ L EWI G +G F LK+G+IL
Sbjct: 7 NRGPAYGLSAEVKNKLAQKYDHQREQELREWIEGVTGRRIGN------NFMDGLKDGIIL 60
Query: 259 SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKD 438
+ +N L P K V N + + Q+E + F+KA YGV D+F+ DLFE +
Sbjct: 61 CEFINKLQPGSVKKV----NESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTN 116
Query: 439 LAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 618
VQ TL+AL S+A TK + N +K A++ +R F +L+EG+++IGLQMG+N
Sbjct: 117 HTQVQSTLLALASMAKTKGN-----KVNVGVKYAEKQERRFEPEKLREGRNIIGLQMGTN 171
Query: 619 RGASQAGMTGYGRPRQI 669
+ ASQ GMT YG R +
Sbjct: 172 KFASQQGMTAYGTRRHL 188
>ref|NP_001030497.1| calponin-2 [Bos taurus].
Length = 309
Score = 130 bits (327), Expect = 2e-30
Identities = 81/197 (41%), Positives = 119/197 (60%)
Frame = +1
Query: 79 NKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVIL 258
NKGPSYG+S EV+++++ KYD + E L WI G VG PD FQ LK+G+IL
Sbjct: 7 NKGPSYGLSAEVKNRLQSKYDPQKEAELRSWIEGLTGLSVG-PD-----FQKGLKDGIIL 60
Query: 259 SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKD 438
L+N L P GS P K+ N + Q+E ++ F+KA YG+ D+F+ DLFE +
Sbjct: 61 CTLMNKLQP-GSVP-KI--NRSMQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGN 116
Query: 439 LAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 618
L VQ +L+AL A TK + + +K +++ +R F ++ ++ G+ VIGLQMG+N
Sbjct: 117 LTQVQVSLLALAGKAKTKG---LQSGVDIGVKYSEKQERNFDDATMKAGQCVIGLQMGTN 173
Query: 619 RGASQAGMTGYGRPRQI 669
+ ASQ+GMT YG R +
Sbjct: 174 KCASQSGMTAYGTRRHL 190
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,957,766
Number of extensions: 1455289
Number of successful extensions: 7274
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 7218
Number of HSP's successfully gapped: 10
Length of query: 373
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 269
Effective length of database: 14,240,222
Effective search space: 3830619718
Effective search space used: 3830619718
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001878
(1121 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536561.2| PREDICTED: similar to transgelin isoform 1 [Can... 403 e-112
Alignment gi|XP_861115.1| PREDICTED: similar to transgelin isoform 3 [Can... 392 e-109
Alignment gi|XP_861087.1| PREDICTED: similar to transgelin isoform 2 [Can... 384 e-107
Alignment gi|XP_535738.1| PREDICTED: similar to neuronal protein [Canis f... 281 6e-76
Alignment gi|XP_852741.1| PREDICTED: similar to transgelin 2 [Canis famil... 280 2e-75
Alignment gi|XP_867647.1| PREDICTED: similar to calponin 1, basic, smooth... 140 3e-33
Alignment gi|XP_542053.1| PREDICTED: similar to calponin 1, basic, smooth... 140 3e-33
Alignment gi|XP_854646.1| PREDICTED: similar to calponin 2 isoform a isof... 126 4e-29
Alignment gi|XP_537063.2| PREDICTED: similar to calponin 3 [Canis familia... 125 6e-29
Alignment gi|XP_868614.1| PREDICTED: similar to calponin 2 isoform a isof... 115 1e-25
>ref|XP_536561.2| PREDICTED: similar to transgelin isoform 1 [Canis familiaris].
Length = 201
Score = 403 bits (1036), Expect = e-112
Identities = 197/201 (98%), Positives = 200/201 (99%)
Frame = +1
Query: 73 MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
MANKGPSYGMSREVQSKIEKKYDEELEERLVEWI++QCG DVGRPDRGRLGFQVWLKNGV
Sbjct: 1 MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIVMQCGSDVGRPDRGRLGFQVWLKNGV 60
Query: 253 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG 432
ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDL+EG
Sbjct: 61 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLYEG 120
Query: 433 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 612
KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG
Sbjct: 121 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 180
Query: 613 SNRGASQAGMTGYGRPRQIIS 675
SNRGASQAGMTGYGRPRQIIS
Sbjct: 181 SNRGASQAGMTGYGRPRQIIS 201
>ref|XP_861115.1| PREDICTED: similar to transgelin isoform 3 [Canis familiaris].
Length = 220
Score = 392 bits (1006), Expect = e-109
Identities = 197/220 (89%), Positives = 200/220 (90%), Gaps = 19/220 (8%)
Frame = +1
Query: 73 MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
MANKGPSYGMSREVQSKIEKKYDEELEERLVEWI++QCG DVGRPDRGRLGFQVWLKNGV
Sbjct: 1 MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIVMQCGSDVGRPDRGRLGFQVWLKNGV 60
Query: 253 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG 432
ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDL+EG
Sbjct: 61 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLYEG 120
Query: 433 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMK-------------------KAQEHKR 555
KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMK KAQEHKR
Sbjct: 121 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKYVAARVPCPESLSWLPTSRKAQEHKR 180
Query: 556 EFTESQLQEGKHVIGLQMGSNRGASQAGMTGYGRPRQIIS 675
EFTESQLQEGKHVIGLQMGSNRGASQAGMTGYGRPRQIIS
Sbjct: 181 EFTESQLQEGKHVIGLQMGSNRGASQAGMTGYGRPRQIIS 220
>ref|XP_861087.1| PREDICTED: similar to transgelin isoform 2 [Canis familiaris].
Length = 196
Score = 384 bits (986), Expect = e-107
Identities = 191/201 (95%), Positives = 194/201 (96%)
Frame = +1
Query: 73 MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
MANKGPSYGMSREVQSKIEKKYDEELEERLVEWI++QCG DVGRPDRGRLGFQVWLKNGV
Sbjct: 1 MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIVMQCGSDVGRPDRGRLGFQVWLKNGV 60
Query: 253 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG 432
ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDL+EG
Sbjct: 61 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLYEG 120
Query: 433 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 612
KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMK REFTESQLQEGKHVIGLQMG
Sbjct: 121 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMK-----YREFTESQLQEGKHVIGLQMG 175
Query: 613 SNRGASQAGMTGYGRPRQIIS 675
SNRGASQAGMTGYGRPRQIIS
Sbjct: 176 SNRGASQAGMTGYGRPRQIIS 196
>ref|XP_535738.1| PREDICTED: similar to neuronal protein [Canis familiaris].
Length = 199
Score = 281 bits (720), Expect = 6e-76
Identities = 135/201 (67%), Positives = 170/201 (84%), Gaps = 1/201 (0%)
Frame = +1
Query: 73 MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
MAN+GPSYG+SREVQ KIE+KYD +LE +LV+WII+QC D+ P GR FQ WL +G
Sbjct: 1 MANRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIAHPPPGRAHFQQWLMDGT 60
Query: 253 ILSKLVNSLYPDGSKPV-KVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFE 429
+L KL+NSLYP G +P+ K+ E+ M FKQMEQ++QFLKAAE YGV TD+FQTVDL+E
Sbjct: 61 VLCKLINSLYPPGQEPIPKISES--KMAFKQMEQISQFLKAAEIYGVRTTDIFQTVDLWE 118
Query: 430 GKDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQM 609
GKD+AAVQRTLMALGS+AVTK+DG YRG+P+WF +KAQ+++R F+E QL++G++VIGLQM
Sbjct: 119 GKDMAAVQRTLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQM 178
Query: 610 GSNRGASQAGMTGYGRPRQII 672
GSN+GASQAGMTGYG PRQI+
Sbjct: 179 GSNKGASQAGMTGYGMPRQIM 199
>ref|XP_852741.1| PREDICTED: similar to transgelin 2 [Canis familiaris].
Length = 271
Score = 280 bits (716), Expect = 2e-75
Identities = 133/209 (63%), Positives = 168/209 (80%)
Frame = +1
Query: 46 PRGTPLPTNMANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLG 225
P PLP MAN+GP+YG+SREVQ KIEK+YD +LE+ L++WI QC DVGRP GR
Sbjct: 64 PPQPPLPFGMANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGREN 123
Query: 226 FQVWLKNGVILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDM 405
FQ WLK+G +L +L+N LYP+G PVK + +M FKQMEQ++QFL+AAE YG+ TD+
Sbjct: 124 FQNWLKDGTVLCELINGLYPEGQAPVKKIQ-ASTMAFKQMEQISQFLQAAERYGINTTDI 182
Query: 406 FQTVDLFEGKDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEG 585
FQTVDL+EGK++A VQRTLM LG LAV ++DG + GDPNWF KK++E+ R F+++QLQEG
Sbjct: 183 FQTVDLWEGKNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEG 242
Query: 586 KHVIGLQMGSNRGASQAGMTGYGRPRQII 672
K+VIGLQMG+NRGASQAGMTGYG PRQI+
Sbjct: 243 KNVIGLQMGTNRGASQAGMTGYGMPRQIL 271
>ref|XP_867647.1| PREDICTED: similar to calponin 1, basic, smooth muscle isoform 3
[Canis familiaris].
Length = 258
Score = 140 bits (352), Expect = 3e-33
Identities = 79/197 (40%), Positives = 117/197 (59%)
Frame = +1
Query: 79 NKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVIL 258
N+GP+YG+S EV++K+ +KYD + E+ L EWI G +G F LK+G+IL
Sbjct: 7 NRGPAYGLSAEVKNKLAQKYDHQREQELREWIEGVTGRRIGN------NFMDGLKDGIIL 60
Query: 259 SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKD 438
+ +N L P K V N + + Q+E + F+KA YGV D+F+ DLFE +
Sbjct: 61 CEFINKLQPGSVKKV----NESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTN 116
Query: 439 LAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 618
VQ TL+AL S+A TK + N +K A++ +R+F +L+EG+++IGLQMG+N
Sbjct: 117 HTQVQSTLLALASMAKTKGN-----KVNVGVKYAEKQERKFEPEKLREGRNIIGLQMGTN 171
Query: 619 RGASQAGMTGYGRPRQI 669
+ ASQ GMT YG R +
Sbjct: 172 KFASQQGMTAYGTRRHL 188
>ref|XP_542053.1| PREDICTED: similar to calponin 1, basic, smooth muscle isoform 1
[Canis familiaris].
Length = 297
Score = 140 bits (352), Expect = 3e-33
Identities = 79/197 (40%), Positives = 117/197 (59%)
Frame = +1
Query: 79 NKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVIL 258
N+GP+YG+S EV++K+ +KYD + E+ L EWI G +G F LK+G+IL
Sbjct: 7 NRGPAYGLSAEVKNKLAQKYDHQREQELREWIEGVTGRRIGN------NFMDGLKDGIIL 60
Query: 259 SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKD 438
+ +N L P K V N + + Q+E + F+KA YGV D+F+ DLFE +
Sbjct: 61 CEFINKLQPGSVKKV----NESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTN 116
Query: 439 LAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 618
VQ TL+AL S+A TK + N +K A++ +R+F +L+EG+++IGLQMG+N
Sbjct: 117 HTQVQSTLLALASMAKTKGN-----KVNVGVKYAEKQERKFEPEKLREGRNIIGLQMGTN 171
Query: 619 RGASQAGMTGYGRPRQI 669
+ ASQ GMT YG R +
Sbjct: 172 KFASQQGMTAYGTRRHL 188
>ref|XP_854646.1| PREDICTED: similar to calponin 2 isoform a isoform 1 [Canis
familiaris].
Length = 309
Score = 126 bits (316), Expect = 4e-29
Identities = 80/197 (40%), Positives = 117/197 (59%)
Frame = +1
Query: 79 NKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVIL 258
NKGPSYG+S EV++++ KYD + E L WI G +G PD FQ LK+GVIL
Sbjct: 7 NKGPSYGLSAEVKNRLLSKYDPQKEAELRSWIEGLTGLSIG-PD-----FQKGLKDGVIL 60
Query: 259 SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKD 438
L+N L P GS P K+ N + Q+E ++ F+KA YG+ D+F+ DLFE +
Sbjct: 61 CTLMNKLQP-GSVP-KI--NRSLQNWHQLENLSTFIKAMVSYGMNPVDLFEANDLFESGN 116
Query: 439 LAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 618
+ VQ +L+AL A TK + + +K +++ +R F ++ ++ G VIGLQMG+N
Sbjct: 117 MTQVQVSLLALAGKAKTKG---LQSGVDIGVKYSEKQERNFDDATMKAGHCVIGLQMGTN 173
Query: 619 RGASQAGMTGYGRPRQI 669
+ ASQ+GMT YG R +
Sbjct: 174 KCASQSGMTAYGTRRHL 190
>ref|XP_537063.2| PREDICTED: similar to calponin 3 [Canis familiaris].
Length = 360
Score = 125 bits (315), Expect = 6e-29
Identities = 75/183 (40%), Positives = 105/183 (57%)
Frame = +1
Query: 121 KIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPDGSKP 300
KI KYD + EE L WI G +G FQ+ LK+G+IL +L+N L P K
Sbjct: 50 KIASKYDHQAEEDLRNWIEEVTGMSIGT------NFQLGLKDGIILCELINKLQPGSVKK 103
Query: 301 VKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKDLAAVQRTLMALGSL 480
V N S+ + Q+E + F+KA + YG+ D+F+ DLFE ++ VQ TL+AL L
Sbjct: 104 V----NESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTTLVALAGL 159
Query: 481 AVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSNRGASQAGMTGYGRP 660
A TK + + +K A++ R F E +L+ G+ VIGLQMG+N+ ASQAGMT YG
Sbjct: 160 AKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTAYGTR 216
Query: 661 RQI 669
R +
Sbjct: 217 RHL 219
>ref|XP_868614.1| PREDICTED: similar to calponin 2 isoform a isoform 2 [Canis
familiaris].
Length = 300
Score = 115 bits (287), Expect = 1e-25
Identities = 76/197 (38%), Positives = 110/197 (55%)
Frame = +1
Query: 79 NKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVIL 258
NKGPSYG+S EV++++ KYD + E L WI G +G PD FQ LK+GVIL
Sbjct: 7 NKGPSYGLSAEVKNRLLSKYDPQKEAELRSWIEGLTGLSIG-PD-----FQKGLKDGVIL 60
Query: 259 SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKD 438
L+N L P GS P K+ N + Q+E ++ F+KA YG+ D+F+ DLFE +
Sbjct: 61 CTLMNKLQP-GSVP-KI--NRSLQNWHQLENLSTFIKAMVSYGMNPVDLFEANDLFESGN 116
Query: 439 LAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 618
+ VQ L S + +K +++ +R F ++ ++ G VIGLQMG+N
Sbjct: 117 MTQVQAKTKGLQS------------GVDIGVKYSEKQERNFDDATMKAGHCVIGLQMGTN 164
Query: 619 RGASQAGMTGYGRPRQI 669
+ ASQ+GMT YG R +
Sbjct: 165 KCASQSGMTAYGTRRHL 181
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 49,093,981
Number of extensions: 1502293
Number of successful extensions: 7742
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 7671
Number of HSP's successfully gapped: 13
Length of query: 373
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 269
Effective length of database: 15,407,560
Effective search space: 4144633640
Effective search space used: 4144633640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001878
(1121 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001001522.1| transgelin [Homo sapiens]. 406 e-113
Alignment gi|NP_003177.2| transgelin [Homo sapiens]. 406 e-113
Alignment gi|NP_037391.2| transgelin-3 [Homo sapiens]. 281 6e-76
Alignment gi|NP_001008274.1| transgelin-3 [Homo sapiens]. 281 6e-76
Alignment gi|NP_001008273.1| transgelin-3 [Homo sapiens]. 281 6e-76
Alignment gi|NP_003555.1| transgelin-2 [Homo sapiens]. 273 2e-73
Alignment gi|NP_001830.1| calponin-3 [Homo sapiens]. 147 2e-35
Alignment gi|NP_001290.2| calponin-1 [Homo sapiens]. 139 4e-33
Alignment gi|NP_004359.1| calponin-2 isoform a [Homo sapiens]. 125 5e-29
Alignment gi|NP_958434.1| calponin-2 isoform b [Homo sapiens]. 102 8e-22
>ref|NP_001001522.1| transgelin [Homo sapiens].
Length = 201
Score = 406 bits (1043), Expect = e-113
Identities = 199/201 (99%), Positives = 200/201 (99%)
Frame = +1
Query: 73 MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV
Sbjct: 1 MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 60
Query: 253 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG 432
ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGV KTDMFQTVDLFEG
Sbjct: 61 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVIKTDMFQTVDLFEG 120
Query: 433 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 612
KD+AAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG
Sbjct: 121 KDMAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 180
Query: 613 SNRGASQAGMTGYGRPRQIIS 675
SNRGASQAGMTGYGRPRQIIS
Sbjct: 181 SNRGASQAGMTGYGRPRQIIS 201
>ref|NP_003177.2| transgelin [Homo sapiens].
Length = 201
Score = 406 bits (1043), Expect = e-113
Identities = 199/201 (99%), Positives = 200/201 (99%)
Frame = +1
Query: 73 MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV
Sbjct: 1 MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 60
Query: 253 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG 432
ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGV KTDMFQTVDLFEG
Sbjct: 61 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVIKTDMFQTVDLFEG 120
Query: 433 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 612
KD+AAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG
Sbjct: 121 KDMAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 180
Query: 613 SNRGASQAGMTGYGRPRQIIS 675
SNRGASQAGMTGYGRPRQIIS
Sbjct: 181 SNRGASQAGMTGYGRPRQIIS 201
>ref|NP_037391.2| transgelin-3 [Homo sapiens].
Length = 199
Score = 281 bits (720), Expect = 6e-76
Identities = 135/201 (67%), Positives = 170/201 (84%), Gaps = 1/201 (0%)
Frame = +1
Query: 73 MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
MAN+GPSYG+SREVQ KIE+KYD +LE +LV+WII+QC D+ P GR FQ WL +G
Sbjct: 1 MANRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRAHFQKWLMDGT 60
Query: 253 ILSKLVNSLYPDGSKPV-KVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFE 429
+L KL+NSLYP G +P+ K+ E+ M FKQMEQ++QFLKAAE YGV TD+FQTVDL+E
Sbjct: 61 VLCKLINSLYPPGQEPIPKISES--KMAFKQMEQISQFLKAAETYGVRTTDIFQTVDLWE 118
Query: 430 GKDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQM 609
GKD+AAVQRTLMALGS+AVTK+DG YRG+P+WF +KAQ+++R F+E QL++G++VIGLQM
Sbjct: 119 GKDMAAVQRTLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQM 178
Query: 610 GSNRGASQAGMTGYGRPRQII 672
GSN+GASQAGMTGYG PRQI+
Sbjct: 179 GSNKGASQAGMTGYGMPRQIM 199
>ref|NP_001008274.1| transgelin-3 [Homo sapiens].
Length = 199
Score = 281 bits (720), Expect = 6e-76
Identities = 135/201 (67%), Positives = 170/201 (84%), Gaps = 1/201 (0%)
Frame = +1
Query: 73 MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
MAN+GPSYG+SREVQ KIE+KYD +LE +LV+WII+QC D+ P GR FQ WL +G
Sbjct: 1 MANRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRAHFQKWLMDGT 60
Query: 253 ILSKLVNSLYPDGSKPV-KVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFE 429
+L KL+NSLYP G +P+ K+ E+ M FKQMEQ++QFLKAAE YGV TD+FQTVDL+E
Sbjct: 61 VLCKLINSLYPPGQEPIPKISES--KMAFKQMEQISQFLKAAETYGVRTTDIFQTVDLWE 118
Query: 430 GKDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQM 609
GKD+AAVQRTLMALGS+AVTK+DG YRG+P+WF +KAQ+++R F+E QL++G++VIGLQM
Sbjct: 119 GKDMAAVQRTLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQM 178
Query: 610 GSNRGASQAGMTGYGRPRQII 672
GSN+GASQAGMTGYG PRQI+
Sbjct: 179 GSNKGASQAGMTGYGMPRQIM 199
>ref|NP_001008273.1| transgelin-3 [Homo sapiens].
Length = 199
Score = 281 bits (720), Expect = 6e-76
Identities = 135/201 (67%), Positives = 170/201 (84%), Gaps = 1/201 (0%)
Frame = +1
Query: 73 MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
MAN+GPSYG+SREVQ KIE+KYD +LE +LV+WII+QC D+ P GR FQ WL +G
Sbjct: 1 MANRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRAHFQKWLMDGT 60
Query: 253 ILSKLVNSLYPDGSKPV-KVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFE 429
+L KL+NSLYP G +P+ K+ E+ M FKQMEQ++QFLKAAE YGV TD+FQTVDL+E
Sbjct: 61 VLCKLINSLYPPGQEPIPKISES--KMAFKQMEQISQFLKAAETYGVRTTDIFQTVDLWE 118
Query: 430 GKDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQM 609
GKD+AAVQRTLMALGS+AVTK+DG YRG+P+WF +KAQ+++R F+E QL++G++VIGLQM
Sbjct: 119 GKDMAAVQRTLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQM 178
Query: 610 GSNRGASQAGMTGYGRPRQII 672
GSN+GASQAGMTGYG PRQI+
Sbjct: 179 GSNKGASQAGMTGYGMPRQIM 199
>ref|NP_003555.1| transgelin-2 [Homo sapiens].
Length = 199
Score = 273 bits (699), Expect = 2e-73
Identities = 129/200 (64%), Positives = 165/200 (82%)
Frame = +1
Query: 73 MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
MAN+GP+YG+SREVQ KIEK+YD +LE+ L++WI QC DVGRP GR FQ WLK+G
Sbjct: 1 MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 60
Query: 253 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG 432
+L +L+N+LYP+G PVK + +M FKQMEQ++QFL+AAE YG+ TD+FQTVDL+EG
Sbjct: 61 VLCELINALYPEGQAPVKKIQ-ASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEG 119
Query: 433 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 612
K++A VQRTLM LG LAV ++DG + GDPNWF KK++E+ R F+++QLQEGK+VIGLQMG
Sbjct: 120 KNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMG 179
Query: 613 SNRGASQAGMTGYGRPRQII 672
+NRGASQAGMTGYG PRQI+
Sbjct: 180 TNRGASQAGMTGYGMPRQIL 199
>ref|NP_001830.1| calponin-3 [Homo sapiens].
Length = 329
Score = 147 bits (371), Expect = 2e-35
Identities = 85/197 (43%), Positives = 118/197 (59%)
Frame = +1
Query: 79 NKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVIL 258
NKGPSYG+S EV++KI KYD + EE L WI G +G FQ+ LK+G+IL
Sbjct: 5 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGP------NFQLGLKDGIIL 58
Query: 259 SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKD 438
+L+N L P K V N S+ + Q+E + F+KA + YG+ D+F+ DLFE +
Sbjct: 59 CELINKLQPGSVKKV----NESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGN 114
Query: 439 LAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 618
+ VQ TL+AL LA TK + + +K A++ R F E +L+ G+ VIGLQMG+N
Sbjct: 115 MTQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTN 171
Query: 619 RGASQAGMTGYGRPRQI 669
+ ASQAGMT YG R +
Sbjct: 172 KCASQAGMTAYGTRRHL 188
>ref|NP_001290.2| calponin-1 [Homo sapiens].
Length = 297
Score = 139 bits (351), Expect = 4e-33
Identities = 78/197 (39%), Positives = 117/197 (59%)
Frame = +1
Query: 79 NKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVIL 258
N+GP+YG+S EV++K+ +KYD + E+ L EWI G +G F LK+G+IL
Sbjct: 7 NRGPAYGLSAEVKNKLAQKYDHQREQELREWIEGVTGRRIGN------NFMDGLKDGIIL 60
Query: 259 SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKD 438
+ +N L P K + N + + Q+E + F+KA YGV D+F+ DLFE +
Sbjct: 61 CEFINKLQPGSVKKI----NESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTN 116
Query: 439 LAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 618
VQ TL+AL S+A TK + N +K A++ +R+F +L+EG+++IGLQMG+N
Sbjct: 117 HTQVQSTLLALASMAKTKGN-----KVNVGVKYAEKQERKFEPGKLREGRNIIGLQMGTN 171
Query: 619 RGASQAGMTGYGRPRQI 669
+ ASQ GMT YG R +
Sbjct: 172 KFASQQGMTAYGTRRHL 188
>ref|NP_004359.1| calponin-2 isoform a [Homo sapiens].
Length = 309
Score = 125 bits (315), Expect = 5e-29
Identities = 79/197 (40%), Positives = 117/197 (59%)
Frame = +1
Query: 79 NKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVIL 258
NKGPSYG+S EV++++ KYD + E L WI G +G PD FQ LK+G IL
Sbjct: 7 NKGPSYGLSAEVKNRLLSKYDPQKEAELRTWIEGLTGLSIG-PD-----FQKGLKDGTIL 60
Query: 259 SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKD 438
L+N L P GS P K+ N + Q+E ++ F+KA YG+ D+F+ DLFE +
Sbjct: 61 CTLMNKLQP-GSVP-KI--NRSMQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGN 116
Query: 439 LAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 618
+ VQ +L+AL A TK + + +K +++ +R F ++ ++ G+ VIGLQMG+N
Sbjct: 117 MTQVQVSLLALAGKAKTKG---LQSGVDIGVKYSEKQERNFDDATMKAGQCVIGLQMGTN 173
Query: 619 RGASQAGMTGYGRPRQI 669
+ ASQ+GMT YG R +
Sbjct: 174 KCASQSGMTAYGTRRHL 190
>ref|NP_958434.1| calponin-2 isoform b [Homo sapiens].
Length = 270
Score = 102 bits (253), Expect = 8e-22
Identities = 75/198 (37%), Positives = 103/198 (52%), Gaps = 1/198 (0%)
Frame = +1
Query: 79 NKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVIL 258
NKGPSYG+S EV++++ KYD + E L WI G +G PD FQ LK+G IL
Sbjct: 7 NKGPSYGLSAEVKNRLLSKYDPQKEAELRTWIEGLTGLSIG-PD-----FQKGLKDGTIL 60
Query: 259 SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKD 438
L+N L P GS P K+ N + Q+E ++ F+KA YG+ D+F+ DLFE +
Sbjct: 61 CTLMNKLQP-GSVP-KI--NRSMQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGN 116
Query: 439 LAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKH-VIGLQMGS 615
+ VQ +L+AL T G + ++ H + L H I LQMG+
Sbjct: 117 MTQVQVSLLALAGKMGTNKCASQSGMTAYGTRR---HLYDPKNHILPPMDHSTISLQMGT 173
Query: 616 NRGASQAGMTGYGRPRQI 669
N+ ASQ GMT G R I
Sbjct: 174 NKCASQVGMTAPGTRRHI 191
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,931,157
Number of extensions: 1455531
Number of successful extensions: 7453
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 7398
Number of HSP's successfully gapped: 10
Length of query: 373
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 269
Effective length of database: 14,868,908
Effective search space: 3999736252
Effective search space used: 3999736252
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001878
(1121 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035656.1| transgelin [Mus musculus]. 398 e-111
Alignment gi|NP_062728.1| transgelin-3 [Mus musculus]. 281 9e-76
Alignment gi|NP_848713.1| transgelin-2 [Mus musculus]. 277 9e-75
Alignment gi|NP_082320.1| calponin-3 [Mus musculus]. 147 1e-35
Alignment gi|NP_034052.3| calponin-1 [Mus musculus]. 139 3e-33
Alignment gi|NP_031751.1| calponin-2 [Mus musculus]. 127 1e-29
>ref|NP_035656.1| transgelin [Mus musculus].
Length = 201
Score = 398 bits (1022), Expect = e-111
Identities = 193/201 (96%), Positives = 200/201 (99%)
Frame = +1
Query: 73 MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
MANKGPSYGMSREVQSKIEKKYDEELEERLVEWI+VQCGPDVGRPDRGRLGFQVWLKNGV
Sbjct: 1 MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIVVQCGPDVGRPDRGRLGFQVWLKNGV 60
Query: 253 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG 432
ILSKLVNSLYP+GSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGV KTDMFQTVDL+EG
Sbjct: 61 ILSKLVNSLYPEGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVIKTDMFQTVDLYEG 120
Query: 433 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 612
KD+AAVQRTLMALGSLAVTKNDG+YRGDPNWFMKKAQEHKR+FT+SQLQEGKHVIGLQMG
Sbjct: 121 KDMAAVQRTLMALGSLAVTKNDGNYRGDPNWFMKKAQEHKRDFTDSQLQEGKHVIGLQMG 180
Query: 613 SNRGASQAGMTGYGRPRQIIS 675
SNRGASQAGMTGYGRPRQIIS
Sbjct: 181 SNRGASQAGMTGYGRPRQIIS 201
>ref|NP_062728.1| transgelin-3 [Mus musculus].
Length = 199
Score = 281 bits (718), Expect = 9e-76
Identities = 135/201 (67%), Positives = 170/201 (84%), Gaps = 1/201 (0%)
Frame = +1
Query: 73 MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
MAN+GPSYG+SREVQ KIE+KYD +LE +LV+WII+QC D+ P GR FQ WL +G
Sbjct: 1 MANRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRAHFQKWLMDGT 60
Query: 253 ILSKLVNSLYPDGSKPV-KVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFE 429
+L KL+NSLYP G +P+ K+ E+ M FKQMEQ++QFLKAAE YGV TD+FQTVDL+E
Sbjct: 61 VLCKLINSLYPPGQEPIPKISES--KMAFKQMEQISQFLKAAEVYGVRTTDIFQTVDLWE 118
Query: 430 GKDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQM 609
GKD+AAVQRTLMALGS+AVTK+DG YRG+P+WF +KAQ+++R F+E QL++G++VIGLQM
Sbjct: 119 GKDMAAVQRTLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQM 178
Query: 610 GSNRGASQAGMTGYGRPRQII 672
GSN+GASQAGMTGYG PRQI+
Sbjct: 179 GSNKGASQAGMTGYGMPRQIM 199
>ref|NP_848713.1| transgelin-2 [Mus musculus].
Length = 199
Score = 277 bits (709), Expect = 9e-75
Identities = 132/200 (66%), Positives = 165/200 (82%)
Frame = +1
Query: 73 MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
MAN+GPSYG+SREVQ KIEK+YD +LE+ L++WI QC DVG+P GR FQ WLK+G
Sbjct: 1 MANRGPSYGLSREVQQKIEKQYDADLEQILIQWITTQCREDVGQPQPGRENFQKWLKDGT 60
Query: 253 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG 432
+L KL+NSLYP+G PVK + SM FKQMEQ++QFL+AAE YG+ TD+FQTVDL+EG
Sbjct: 61 VLCKLINSLYPEGQAPVKKIQ-ASSMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEG 119
Query: 433 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 612
K++A VQRTLM LG LAV ++DG + GDPNWF KK++E+ R F+++QLQEGK+VIGLQMG
Sbjct: 120 KNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMG 179
Query: 613 SNRGASQAGMTGYGRPRQII 672
+NRGASQAGMTGYG PRQI+
Sbjct: 180 TNRGASQAGMTGYGMPRQIL 199
>ref|NP_082320.1| calponin-3 [Mus musculus].
Length = 330
Score = 147 bits (372), Expect = 1e-35
Identities = 85/197 (43%), Positives = 119/197 (60%)
Frame = +1
Query: 79 NKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVIL 258
NKGPSYG+S EV++KI KYD++ EE L WI G +G FQ+ LK+G+IL
Sbjct: 5 NKGPSYGLSAEVKNKIASKYDQQAEEDLRNWIEEVTGLGIGT------NFQLGLKDGIIL 58
Query: 259 SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKD 438
+L+N L P K V N S+ + Q+E + F+KA + YG+ D+F+ DLFE +
Sbjct: 59 CELINKLQPGSVKKV----NESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGN 114
Query: 439 LAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 618
+ VQ TL+AL LA TK + + +K A++ R F E +L+ G+ VIGLQMG+N
Sbjct: 115 MTQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTN 171
Query: 619 RGASQAGMTGYGRPRQI 669
+ ASQAGMT YG R +
Sbjct: 172 KCASQAGMTAYGTRRHL 188
>ref|NP_034052.3| calponin-1 [Mus musculus].
Length = 297
Score = 139 bits (351), Expect = 3e-33
Identities = 79/197 (40%), Positives = 116/197 (58%)
Frame = +1
Query: 79 NKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVIL 258
N+GP+YG+S EV++K+ +KYD + E+ L EWI G +G F LK+G+IL
Sbjct: 7 NRGPAYGLSAEVKNKLAQKYDHQREQELREWIEGVTGRRIGN------NFMDGLKDGIIL 60
Query: 259 SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKD 438
+ +N L P K V N + + Q+E + F+KA YGV D+F+ DLFE +
Sbjct: 61 CEFINKLQPGSVKKV----NESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTN 116
Query: 439 LAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 618
VQ TL+AL S+A TK + N +K A++ +R F +L+EG+++IGLQMG+N
Sbjct: 117 HTQVQSTLLALASMAKTKGN-----KVNVGVKYAEKQERRFEPEKLREGRNIIGLQMGTN 171
Query: 619 RGASQAGMTGYGRPRQI 669
+ ASQ GMT YG R +
Sbjct: 172 KFASQQGMTAYGTRRHL 188
>ref|NP_031751.1| calponin-2 [Mus musculus].
Length = 305
Score = 127 bits (320), Expect = 1e-29
Identities = 80/197 (40%), Positives = 118/197 (59%)
Frame = +1
Query: 79 NKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVIL 258
NKGPSYG+S EV++++ KYD + E L WI G +G PD FQ LK+GVIL
Sbjct: 7 NKGPSYGLSAEVKNRLLSKYDPQKEAELRSWIEGLTGLSIG-PD-----FQKGLKDGVIL 60
Query: 259 SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKD 438
L+N L P GS P K+ N + Q+E ++ F+KA YG+ D+F+ DLFE +
Sbjct: 61 CTLMNKLQP-GSVP-KI--NRSMQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGN 116
Query: 439 LAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 618
+ VQ +L+AL A TK + + +K +++ +R F ++ ++ G+ VIGLQMG+N
Sbjct: 117 MTQVQVSLLALAGKAKTKG---LQSGVDIGVKYSEKQERNFDDATMKAGQCVIGLQMGTN 173
Query: 619 RGASQAGMTGYGRPRQI 669
+ ASQ+GMT YG R +
Sbjct: 174 KCASQSGMTAYGTRRHL 190
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,231,218
Number of extensions: 1195928
Number of successful extensions: 5823
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5785
Number of HSP's successfully gapped: 6
Length of query: 373
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 270
Effective length of database: 12,523,851
Effective search space: 3381439770
Effective search space used: 3381439770
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001878
(1121 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003357356.1| PREDICTED: transgelin [Sus scrofa]. 417 e-117
Alignment gi|XP_003129930.1| PREDICTED: transgelin isoform 2 [Sus scrofa]. 409 e-114
Alignment gi|XP_003129929.1| PREDICTED: transgelin isoform 1 [Sus scrofa]. 409 e-114
Alignment gi|XP_003361052.1| PREDICTED: transgelin-3-like isoform 2 [Sus ... 281 6e-76
Alignment gi|XP_003361051.1| PREDICTED: transgelin-3-like isoform 1 [Sus ... 281 6e-76
Alignment gi|XP_003355153.1| PREDICTED: transgelin-2-like isoform 2 [Sus ... 273 1e-73
Alignment gi|XP_003125720.2| PREDICTED: transgelin-2-like isoform 1 [Sus ... 273 1e-73
Alignment gi|XP_003125950.1| PREDICTED: calponin-3 [Sus scrofa]. 148 6e-36
Alignment gi|NP_999043.1| calponin-1 [Sus scrofa]. 140 2e-33
Alignment gi|XP_003354007.1| PREDICTED: calponin-2 isoform 1 [Sus scrofa]. 130 2e-30
>ref|XP_003357356.1| PREDICTED: transgelin [Sus scrofa].
Length = 213
Score = 417 bits (1073), Expect = e-117
Identities = 205/205 (100%), Positives = 205/205 (100%)
Frame = +1
Query: 61 LPTNMANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWL 240
LPTNMANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWL
Sbjct: 9 LPTNMANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWL 68
Query: 241 KNGVILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVD 420
KNGVILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVD
Sbjct: 69 KNGVILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVD 128
Query: 421 LFEGKDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIG 600
LFEGKDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIG
Sbjct: 129 LFEGKDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIG 188
Query: 601 LQMGSNRGASQAGMTGYGRPRQIIS 675
LQMGSNRGASQAGMTGYGRPRQIIS
Sbjct: 189 LQMGSNRGASQAGMTGYGRPRQIIS 213
>ref|XP_003129930.1| PREDICTED: transgelin isoform 2 [Sus scrofa].
Length = 201
Score = 409 bits (1051), Expect = e-114
Identities = 201/201 (100%), Positives = 201/201 (100%)
Frame = +1
Query: 73 MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV
Sbjct: 1 MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 60
Query: 253 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG 432
ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG
Sbjct: 61 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG 120
Query: 433 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 612
KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG
Sbjct: 121 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 180
Query: 613 SNRGASQAGMTGYGRPRQIIS 675
SNRGASQAGMTGYGRPRQIIS
Sbjct: 181 SNRGASQAGMTGYGRPRQIIS 201
>ref|XP_003129929.1| PREDICTED: transgelin isoform 1 [Sus scrofa].
Length = 201
Score = 409 bits (1051), Expect = e-114
Identities = 201/201 (100%), Positives = 201/201 (100%)
Frame = +1
Query: 73 MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV
Sbjct: 1 MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 60
Query: 253 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG 432
ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG
Sbjct: 61 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG 120
Query: 433 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 612
KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG
Sbjct: 121 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 180
Query: 613 SNRGASQAGMTGYGRPRQIIS 675
SNRGASQAGMTGYGRPRQIIS
Sbjct: 181 SNRGASQAGMTGYGRPRQIIS 201
>ref|XP_003361052.1| PREDICTED: transgelin-3-like isoform 2 [Sus scrofa].
Length = 199
Score = 281 bits (718), Expect = 6e-76
Identities = 135/201 (67%), Positives = 170/201 (84%), Gaps = 1/201 (0%)
Frame = +1
Query: 73 MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
MAN+GPSYG+SREVQ KIE+KYD +LE +LV+WII+QC D+ P GR FQ WL +G
Sbjct: 1 MANRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRTHFQKWLMDGT 60
Query: 253 ILSKLVNSLYPDGSKPV-KVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFE 429
+L KL+NSLYP G +P+ K+ E+ M FKQMEQ++QFLKAAE YGV TD+FQTVDL+E
Sbjct: 61 VLCKLINSLYPPGQEPIPKISES--KMAFKQMEQISQFLKAAEIYGVRTTDIFQTVDLWE 118
Query: 430 GKDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQM 609
GKD+AAVQRTLMALGS+AVTK+DG YRG+P+WF +KAQ+++R F+E QL++G++VIGLQM
Sbjct: 119 GKDMAAVQRTLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQM 178
Query: 610 GSNRGASQAGMTGYGRPRQII 672
GSN+GASQAGMTGYG PRQI+
Sbjct: 179 GSNKGASQAGMTGYGMPRQIM 199
>ref|XP_003361051.1| PREDICTED: transgelin-3-like isoform 1 [Sus scrofa].
Length = 199
Score = 281 bits (718), Expect = 6e-76
Identities = 135/201 (67%), Positives = 170/201 (84%), Gaps = 1/201 (0%)
Frame = +1
Query: 73 MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
MAN+GPSYG+SREVQ KIE+KYD +LE +LV+WII+QC D+ P GR FQ WL +G
Sbjct: 1 MANRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRTHFQKWLMDGT 60
Query: 253 ILSKLVNSLYPDGSKPV-KVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFE 429
+L KL+NSLYP G +P+ K+ E+ M FKQMEQ++QFLKAAE YGV TD+FQTVDL+E
Sbjct: 61 VLCKLINSLYPPGQEPIPKISES--KMAFKQMEQISQFLKAAEIYGVRTTDIFQTVDLWE 118
Query: 430 GKDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQM 609
GKD+AAVQRTLMALGS+AVTK+DG YRG+P+WF +KAQ+++R F+E QL++G++VIGLQM
Sbjct: 119 GKDMAAVQRTLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQM 178
Query: 610 GSNRGASQAGMTGYGRPRQII 672
GSN+GASQAGMTGYG PRQI+
Sbjct: 179 GSNKGASQAGMTGYGMPRQIM 199
>ref|XP_003355153.1| PREDICTED: transgelin-2-like isoform 2 [Sus scrofa].
Length = 199
Score = 273 bits (698), Expect = 1e-73
Identities = 129/200 (64%), Positives = 164/200 (82%)
Frame = +1
Query: 73 MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
MAN+GP+YG+SREVQ KIEK+YD +LE+ L++WI QC DVGRP GR FQ WLK+G
Sbjct: 1 MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 60
Query: 253 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG 432
+L +L+N LYP+G PVK + +M FKQMEQ++QFL+AAE YG+ TD+FQTVDL+EG
Sbjct: 61 VLCELINGLYPEGQAPVKKIQ-ASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEG 119
Query: 433 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 612
K++A VQRTLM LG LAV ++DG + GDPNWF KK++E+ R F+++QLQEGK+VIGLQMG
Sbjct: 120 KNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMG 179
Query: 613 SNRGASQAGMTGYGRPRQII 672
+NRGASQAGMTGYG PRQI+
Sbjct: 180 TNRGASQAGMTGYGMPRQIL 199
>ref|XP_003125720.2| PREDICTED: transgelin-2-like isoform 1 [Sus scrofa].
Length = 199
Score = 273 bits (698), Expect = 1e-73
Identities = 129/200 (64%), Positives = 164/200 (82%)
Frame = +1
Query: 73 MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
MAN+GP+YG+SREVQ KIEK+YD +LE+ L++WI QC DVGRP GR FQ WLK+G
Sbjct: 1 MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 60
Query: 253 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG 432
+L +L+N LYP+G PVK + +M FKQMEQ++QFL+AAE YG+ TD+FQTVDL+EG
Sbjct: 61 VLCELINGLYPEGQAPVKKIQ-ASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEG 119
Query: 433 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 612
K++A VQRTLM LG LAV ++DG + GDPNWF KK++E+ R F+++QLQEGK+VIGLQMG
Sbjct: 120 KNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMG 179
Query: 613 SNRGASQAGMTGYGRPRQII 672
+NRGASQAGMTGYG PRQI+
Sbjct: 180 TNRGASQAGMTGYGMPRQIL 199
>ref|XP_003125950.1| PREDICTED: calponin-3 [Sus scrofa].
Length = 579
Score = 148 bits (373), Expect = 6e-36
Identities = 89/212 (41%), Positives = 122/212 (57%), Gaps = 5/212 (2%)
Frame = +1
Query: 49 RGTPLP-----TNMANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDR 213
R PLP NKGPSYG+S EV++KI KYD + EE L WI G +G
Sbjct: 240 RAQPLPGPRIIMTHFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGT--- 296
Query: 214 GRLGFQVWLKNGVILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVT 393
FQ+ LK+G+IL +L+N L P K V N S+ + Q+E + F+KA + YG+
Sbjct: 297 ---SFQLGLKDGIILCELINKLQPGSVKKV----NESSLNWPQLENIGNFIKAIQAYGMK 349
Query: 394 KTDMFQTVDLFEGKDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQ 573
D+F+ DLFE ++ VQ TL+AL LA TK + + +K A++ R F E +
Sbjct: 350 PHDIFEANDLFENGNMTQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGK 406
Query: 574 LQEGKHVIGLQMGSNRGASQAGMTGYGRPRQI 669
L+ G+ VIGLQMG+N+ ASQAGMT YG R +
Sbjct: 407 LKAGQSVIGLQMGTNKCASQAGMTAYGTRRHL 438
>ref|NP_999043.1| calponin-1 [Sus scrofa].
Length = 297
Score = 140 bits (352), Expect = 2e-33
Identities = 79/197 (40%), Positives = 117/197 (59%)
Frame = +1
Query: 79 NKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVIL 258
N+GP+YG+S EV++K+ +KYD + E+ L EWI G +G F LK+G+IL
Sbjct: 7 NRGPAYGLSAEVKNKLAQKYDHQQEQELREWIEGVTGRRIGN------NFMDGLKDGIIL 60
Query: 259 SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKD 438
+ +N L P K V N + + Q+E + F+KA YGV D+F+ DLFE +
Sbjct: 61 CEFINKLQPGSVKKV----NESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTN 116
Query: 439 LAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 618
VQ TL+AL S+A TK + N +K A++ +R+F +L+EG+++IGLQMG+N
Sbjct: 117 HTQVQSTLLALASMAKTKGN-----KVNVGVKYAEKQERKFEPEKLREGRNIIGLQMGTN 171
Query: 619 RGASQAGMTGYGRPRQI 669
+ ASQ GMT YG R +
Sbjct: 172 KFASQQGMTAYGTRRHL 188
>ref|XP_003354007.1| PREDICTED: calponin-2 isoform 1 [Sus scrofa].
Length = 309
Score = 130 bits (326), Expect = 2e-30
Identities = 80/197 (40%), Positives = 119/197 (60%)
Frame = +1
Query: 79 NKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVIL 258
NKGPSYG+S EV++++ KYD + E L WI G +G PD FQ LK+G+IL
Sbjct: 7 NKGPSYGLSAEVKNRLLSKYDPQKEAELRSWIEGLTGLSIG-PD-----FQKGLKDGIIL 60
Query: 259 SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKD 438
L+N L P GS P K+ N + Q+E ++ F+KA YG+ D+F+ DLFE +
Sbjct: 61 CTLMNKLQP-GSVP-KI--NRSMQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGN 116
Query: 439 LAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 618
+ VQ +L+AL A TK + D + +K +++ +R F ++ ++ G+ VIGLQMG+N
Sbjct: 117 MTQVQVSLLALAGKAKTKG---LQSDVDIGVKYSEKQQRNFDDATMKAGQCVIGLQMGTN 173
Query: 619 RGASQAGMTGYGRPRQI 669
+ ASQ+GMT YG R +
Sbjct: 174 KCASQSGMTAYGTRRHL 190
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,427,150
Number of extensions: 948777
Number of successful extensions: 4844
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 4799
Number of HSP's successfully gapped: 13
Length of query: 373
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 273
Effective length of database: 8,854,232
Effective search space: 2417205336
Effective search space used: 2417205336
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001878
(1121 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 1037 0.0
Sscrofa_Chr14 84 2e-13
Sscrofa_Chr13 68 1e-08
gb|JH118611.1| Sus scrofa unplaced genomic scaffold ChrUScaf1265 66 4e-08
>Sscrofa_Chr09
|| Length = 153670197
Score = 1037 bits (523), Expect = 0.0
Identities = 532/535 (99%)
Strand = Plus / Plus
Query: 534 gaaagcccaggagcataagagggaattcacagagagccaactgcaggagggaaagcatgt 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49636122 gaaagcccaggagcataagagggaattcacagagagccaactgcaggagggaaagcatgt 49636181
Query: 594 cattggcctgcagatgggcagcaacagaggggcctcccaggctggcatgacaggctacgg 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49636182 cattggcctgcagatgggcagcaacagaggggcctcccaggctggcatgacaggctacgg 49636241
Query: 654 acgacctcggcagatcatcagttagagggggtggggcaaccctggccccgcccttgccca 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49636242 acgacctcggcagatcatcagttagagggggtggggcaaccctggccccgcccttgccca 49636301
Query: 714 gctcgctggctgcagccatcccgcctcgcccgcctcaccctcacccgtgtggctccttca 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49636302 gctcgctggctgcagccatcccgcctcgcccgcctcaccctcacccgtgtggctccttca 49636361
Query: 774 gccctggccaagcttcgaggctccatcactgagcaaaggtgactgcacttgggcagctcg 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49636362 gccctggccaagcttcgaggctccatcactgagcaaaggtgactgcacttgggcagctcg 49636421
Query: 834 cccgcacccctcagcccaacttccaaccccaaagcactgctcccccagcccacctcccag 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49636422 cccgcacccctcagcccaacttccaaccccaaagcactgctcccccagcccacctcccag 49636481
Query: 894 ttcctccattggctctactgtctcctcatcccaggctgagccggggagacatgggctggc 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49636482 ttcctccattggctctactgtctcctcatcccaggctgagccggggagacatgggctggc 49636541
Query: 954 ggtggcctgggtgtgggcaagtccaccatcctccttggcagcaaatgcctgttgaaagaa 1013
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 49636542 ggtggcctgggtgtgggcaagtccaccatcctccttggcagcagatgcctgttgaaggag 49636601
Query: 1014 acccagcccaacctccccccatttttttgctggaatagtttgggggttgaaattc 1068
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49636602 acccagcccaacctccccccatttttttgctggaatagtttgggggttgaaattc 49636656
Score = 381 bits (192), Expect = e-103
Identities = 192/192 (100%)
Strand = Plus / Plus
Query: 61 cttcccaccaacatggccaacaagggtccttcctatggcatgagccgagaagtgcaatcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49634791 cttcccaccaacatggccaacaagggtccttcctatggcatgagccgagaagtgcaatcc 49634850
Query: 121 aaaattgagaagaagtacgacgaggagctggaggaacggctggtggagtggatcatagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49634851 aaaattgagaagaagtacgacgaggagctggaggaacggctggtggagtggatcatagtg 49634910
Query: 181 cagtgtggccctgatgtagggcgcccggaccgtgggcgcctgggcttccaggtctggctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49634911 cagtgtggccctgatgtagggcgcccggaccgtgggcgcctgggcttccaggtctggctg 49634970
Query: 241 aagaatggcgtg 252
||||||||||||
Sbjct: 49634971 aagaatggcgtg 49634982
Score = 357 bits (180), Expect = 8e-96
Identities = 180/180 (100%)
Strand = Plus / Plus
Query: 252 gattttgagcaagctggtcaacagcctgtatcctgacggctccaaacccgtgaaggtgcc 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49635088 gattttgagcaagctggtcaacagcctgtatcctgacggctccaaacccgtgaaggtgcc 49635147
Query: 312 cgagaacccaccctccatggtcttcaagcaaatggagcaggtggctcagttcttaaaggc 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49635148 cgagaacccaccctccatggtcttcaagcaaatggagcaggtggctcagttcttaaaggc 49635207
Query: 372 cgctgaggactatggcgtcaccaagactgacatgttccagactgttgacctcttcgaagg 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49635208 cgctgaggactatggcgtcaccaagactgacatgttccagactgttgacctcttcgaagg 49635267
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 429 aggcaaagacctggccgcggtgcagaggaccctgatggctctgggcagcttggccgtgac 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49635538 aggcaaagacctggccgcggtgcagaggaccctgatggctctgggcagcttggccgtgac 49635597
Query: 489 caagaatgatggacactaccgtggcgatcccaactggtttatgaag 534
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49635598 caagaatgatggacactaccgtggcgatcccaactggtttatgaag 49635643
Score = 119 bits (60), Expect = 3e-24
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 1 atcctgtctgtccaagtccagacagagctcactccttccttcgagcctcgaggaacccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49631168 atcctgtctgtccaagtccagacagagctcactccttccttcgagcctcgaggaacccct 49631227
>Sscrofa_Chr14
|| Length = 153851969
Score = 83.8 bits (42), Expect = 2e-13
Identities = 63/70 (90%)
Strand = Plus / Plus
Query: 611 gcagcaacagaggggcctcccaggctggcatgacaggctacggacgacctcggcagatca 670
||||||||||| |||||||||||||||||||| ||| ||||||| ||||| |||| |||
Sbjct: 67175546 gcagcaacagatgggcctcccaggctggcatgccagactacggatgaccttggcatttca 67175605
Query: 671 tcagttagag 680
||||||||||
Sbjct: 67175606 tcagttagag 67175615
>Sscrofa_Chr13
|| Length = 218635234
Score = 67.9 bits (34), Expect = 1e-08
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 592 gtcattggcctgcagatgggcagcaacagaggggcctcccaggctggcatgacaggctac 651
||||| |||||||||||||||||||||| || ||||||||||| |||||||| || |||
Sbjct: 157489393 gtcatcggcctgcagatgggcagcaacaagggagcctcccaggcaggcatgactgggtac 157489334
Query: 652 gg 653
||
Sbjct: 157489333 gg 157489332
Score = 65.9 bits (33), Expect = 4e-08
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 448 gtgcagaggaccctgatggctctgggcagcttggccgtgaccaagaatgatgg 500
|||||||||||||||||||||||||||||| | || || |||||| |||||||
Sbjct: 157490991 gtgcagaggaccctgatggctctgggcagcgttgcagtcaccaaggatgatgg 157490939
>gb|JH118611.1| Sus scrofa unplaced genomic scaffold ChrUScaf1265
Length = 87301
Score = 65.9 bits (33), Expect = 4e-08
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 448 gtgcagaggaccctgatggctctgggcagcttggccgtgaccaagaatgatgg 500
|||||||||||||||||||||||||||||| | || || |||||| |||||||
Sbjct: 77200 gtgcagaggaccctgatggctctgggcagcgttgcagtcaccaaggatgatgg 77252
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,180,515
Number of extensions: 211
Number of successful extensions: 211
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 9
Length of query: 1121
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1100
Effective length of database: 2,808,413,156
Effective search space: 3089254471600
Effective search space used: 3089254471600
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)