Animal-Genome cDNA 20110601C-001889


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001889
         (1183 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001068604.1| ATP synthase subunit gamma, mitochondrial pr...   552   e-157
Alignment   gi|XP_001251205.2| PREDICTED: ATP synthase subunit gamma, mitoc...   225   7e-59

>ref|NP_001068604.1| ATP synthase subunit gamma, mitochondrial precursor [Bos taurus].
          Length = 298

 Score =  552 bits (1423), Expect = e-157
 Identities = 284/298 (95%), Positives = 292/298 (97%)
 Frame = +3

Query: 147  MFSRAGVAGLSAWAVQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE 326
            MFSRAGVAGLSAW VQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE
Sbjct: 1    MFSRAGVAGLSAWTVQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE 60

Query: 327  RDLKPARVYGIGSLALYEKADIKVPEDKKKHLIIGVSSDRGLCGAIHSSVAKQIKSEVAN 506
            R+LKPARVYG+GSLALYEKADIK PEDKKKHLIIGVSSDRGLCGAIHSSVAKQ+KSE AN
Sbjct: 61   RELKPARVYGVGSLALYEKADIKTPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKSEAAN 120

Query: 507  LTAAGKEVKIVGVGDKIRGILHRTHSDQFLVTFKEVGRKPPTFGDASVIALELLNSGYEF 686
            L AAGKEVKI+GVGDKIR ILHRTHSDQFLVTFKEVGR+PPTFGDASVIALELLNSGYEF
Sbjct: 121  LAAAGKEVKIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEF 180

Query: 687  DEGSIIFNRFRSVISYKTEEKPIFSLDTVASAESMSIYDDIDADVLRNYQEYSLANIIYY 866
            DEGSIIFNRFRSVISYKTEEKPIFSLDT++SAESMSIYDDIDADVLRNYQEYSLANIIYY
Sbjct: 181  DEGSIIFNRFRSVISYKTEEKPIFSLDTISSAESMSIYDDIDADVLRNYQEYSLANIIYY 240

Query: 867  SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALE 1040
            SLKESTTS QSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL+
Sbjct: 241  SLKESTTSGQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALD 298


>ref|XP_001251205.2| PREDICTED: ATP synthase subunit gamma, mitochondrial-like, partial
           [Bos taurus].
          Length = 197

 Score =  225 bits (573), Expect = 7e-59
 Identities = 115/123 (93%), Positives = 119/123 (96%)
 Frame = +3

Query: 204 IQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERDLKPARVYGIGSLALYEK 383
           IQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAER+LKPARVYG+GSLALYEK
Sbjct: 75  IQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEK 134

Query: 384 ADIKVPEDKKKHLIIGVSSDRGLCGAIHSSVAKQIKSEVANLTAAGKEVKIVGVGDKIRG 563
           ADIK PEDKKKHLIIGVSSDRGLCGAIHSSVAKQ+KSE ANL AAGKEVKI+GVGDKIR 
Sbjct: 135 ADIKTPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKIRS 194

Query: 564 ILH 572
           ILH
Sbjct: 195 ILH 197


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,408,321
Number of extensions: 1147420
Number of successful extensions: 3349
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3334
Number of HSP's successfully gapped: 2
Length of query: 394
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 290
Effective length of database: 14,240,222
Effective search space: 4129664380
Effective search space used: 4129664380
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001889
         (1183 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_535193.2| PREDICTED: similar to ATP synthase, H+ transpor...   551   e-157
Alignment   gi|XP_858232.1| PREDICTED: similar to ATP synthase, H+ transpor...   550   e-157
Alignment   gi|XP_858275.1| PREDICTED: similar to ATP synthase, H+ transpor...   264   1e-70
Alignment   gi|XP_850961.1| PREDICTED: similar to ATP synthase, H+ transpor...   181   9e-46

>ref|XP_535193.2| PREDICTED: similar to ATP synthase, H+ transporting, mitochondrial F1
            complex, gamma subunit isoform L (liver) precursor
            isoform 1 [Canis familiaris].
          Length = 298

 Score =  551 bits (1420), Expect = e-157
 Identities = 283/298 (94%), Positives = 295/298 (98%)
 Frame = +3

Query: 147  MFSRAGVAGLSAWAVQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE 326
            MFSRAGVAGLSAWAVQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE
Sbjct: 1    MFSRAGVAGLSAWAVQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE 60

Query: 327  RDLKPARVYGIGSLALYEKADIKVPEDKKKHLIIGVSSDRGLCGAIHSSVAKQIKSEVAN 506
            R+LKPARVYG+GSLALYEKADIKVPEDKKKHL+IGVSSDRGLCGAIHSSVAKQ+K+EVA 
Sbjct: 61   RELKPARVYGVGSLALYEKADIKVPEDKKKHLLIGVSSDRGLCGAIHSSVAKQMKNEVAT 120

Query: 507  LTAAGKEVKIVGVGDKIRGILHRTHSDQFLVTFKEVGRKPPTFGDASVIALELLNSGYEF 686
            L AAGKEV +VG+GDKIRGILHRTHSDQFLV+FKEVGRKPPTFGDASVIALELLNSGYEF
Sbjct: 121  LQAAGKEVMLVGIGDKIRGILHRTHSDQFLVSFKEVGRKPPTFGDASVIALELLNSGYEF 180

Query: 687  DEGSIIFNRFRSVISYKTEEKPIFSLDTVASAESMSIYDDIDADVLRNYQEYSLANIIYY 866
            DEGSIIFNRFRSVISYKTEEKPIFSL+TVASAESMSIYDDIDADVL+NYQEY+LANIIYY
Sbjct: 181  DEGSIIFNRFRSVISYKTEEKPIFSLETVASAESMSIYDDIDADVLQNYQEYNLANIIYY 240

Query: 867  SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALE 1040
            SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL+
Sbjct: 241  SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALD 298


>ref|XP_858232.1| PREDICTED: similar to ATP synthase, H+ transporting, mitochondrial F1
            complex, gamma subunit isoform H (heart) precursor
            isoform 3 [Canis familiaris].
          Length = 297

 Score =  550 bits (1418), Expect = e-157
 Identities = 283/297 (95%), Positives = 294/297 (98%)
 Frame = +3

Query: 147  MFSRAGVAGLSAWAVQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE 326
            MFSRAGVAGLSAWAVQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE
Sbjct: 1    MFSRAGVAGLSAWAVQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE 60

Query: 327  RDLKPARVYGIGSLALYEKADIKVPEDKKKHLIIGVSSDRGLCGAIHSSVAKQIKSEVAN 506
            R+LKPARVYG+GSLALYEKADIKVPEDKKKHL+IGVSSDRGLCGAIHSSVAKQ+K+EVA 
Sbjct: 61   RELKPARVYGVGSLALYEKADIKVPEDKKKHLLIGVSSDRGLCGAIHSSVAKQMKNEVAT 120

Query: 507  LTAAGKEVKIVGVGDKIRGILHRTHSDQFLVTFKEVGRKPPTFGDASVIALELLNSGYEF 686
            L AAGKEV +VG+GDKIRGILHRTHSDQFLV+FKEVGRKPPTFGDASVIALELLNSGYEF
Sbjct: 121  LQAAGKEVMLVGIGDKIRGILHRTHSDQFLVSFKEVGRKPPTFGDASVIALELLNSGYEF 180

Query: 687  DEGSIIFNRFRSVISYKTEEKPIFSLDTVASAESMSIYDDIDADVLRNYQEYSLANIIYY 866
            DEGSIIFNRFRSVISYKTEEKPIFSL+TVASAESMSIYDDIDADVL+NYQEY+LANIIYY
Sbjct: 181  DEGSIIFNRFRSVISYKTEEKPIFSLETVASAESMSIYDDIDADVLQNYQEYNLANIIYY 240

Query: 867  SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL 1037
            SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL
Sbjct: 241  SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL 297


>ref|XP_858275.1| PREDICTED: similar to ATP synthase, H+ transporting, mitochondrial
           F1 complex, gamma subunit isoform H (heart) precursor
           isoform 4 [Canis familiaris].
          Length = 143

 Score =  264 bits (675), Expect = 1e-70
 Identities = 133/143 (93%), Positives = 140/143 (97%)
 Frame = +3

Query: 147 MFSRAGVAGLSAWAVQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE 326
           MFSRAGVAGLSAWAVQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE
Sbjct: 1   MFSRAGVAGLSAWAVQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE 60

Query: 327 RDLKPARVYGIGSLALYEKADIKVPEDKKKHLIIGVSSDRGLCGAIHSSVAKQIKSEVAN 506
           R+LKPARVYG+GSLALYEKADIKVPEDKKKHL+IGVSSDRGLCGAIHSSVAKQ+K+EVA 
Sbjct: 61  RELKPARVYGVGSLALYEKADIKVPEDKKKHLLIGVSSDRGLCGAIHSSVAKQMKNEVAT 120

Query: 507 LTAAGKEVKIVGVGDKIRGILHR 575
           L AAGKEV +VG+GDKIRGILHR
Sbjct: 121 LQAAGKEVMLVGIGDKIRGILHR 143


>ref|XP_850961.1| PREDICTED: similar to ATP synthase, H+ transporting, mitochondrial
           F1 complex, gamma subunit isoform H (heart) precursor
           [Canis familiaris].
          Length = 132

 Score =  181 bits (460), Expect = 9e-46
 Identities = 92/115 (80%), Positives = 102/115 (88%)
 Frame = +3

Query: 432 VSSDRGLCGAIHSSVAKQIKSEVANLTAAGKEVKIVGVGDKIRGILHRTHSDQFLVTFKE 611
           +SSD+GLCGAIHSS AKQ+K+EVA   AA KEV +VG+GDKIRGI HRTHSDQFLV+FKE
Sbjct: 1   MSSDQGLCGAIHSSAAKQMKNEVATFKAARKEVMLVGIGDKIRGIPHRTHSDQFLVSFKE 60

Query: 612 VGRKPPTFGDASVIALELLNSGYEFDEGSIIFNRFRSVISYKTEEKPIFSLDTVA 776
            GRK PTFGDAS+IALELLNSGYEFDEGSIIFN FRSVI  KTEEKPIFS ++VA
Sbjct: 61  GGRKTPTFGDASIIALELLNSGYEFDEGSIIFNWFRSVIYCKTEEKPIFSPESVA 115


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,804,840
Number of extensions: 1094126
Number of successful extensions: 3573
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3551
Number of HSP's successfully gapped: 4
Length of query: 394
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 289
Effective length of database: 15,374,224
Effective search space: 4443150736
Effective search space used: 4443150736
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001889
         (1183 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001001973.1| ATP synthase subunit gamma, mitochondrial is...   543   e-154
Alignment   gi|NP_005165.1| ATP synthase subunit gamma, mitochondrial isofo...   542   e-154

>ref|NP_001001973.1| ATP synthase subunit gamma, mitochondrial isoform L (liver) precursor
            [Homo sapiens].
          Length = 298

 Score =  543 bits (1398), Expect = e-154
 Identities = 277/298 (92%), Positives = 293/298 (98%)
 Frame = +3

Query: 147  MFSRAGVAGLSAWAVQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE 326
            MFSRAGVAGLSAW +QPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE
Sbjct: 1    MFSRAGVAGLSAWTLQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE 60

Query: 327  RDLKPARVYGIGSLALYEKADIKVPEDKKKHLIIGVSSDRGLCGAIHSSVAKQIKSEVAN 506
            R+LKPAR+YG+GSLALYEKADIK PEDKKKHL+IGVSSDRGLCGAIHSS+AKQ+KSEVA 
Sbjct: 61   RELKPARIYGLGSLALYEKADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVAT 120

Query: 507  LTAAGKEVKIVGVGDKIRGILHRTHSDQFLVTFKEVGRKPPTFGDASVIALELLNSGYEF 686
            LTAAGKEV +VG+GDKIRGIL+RTHSDQFLV FKEVGRKPPTFGDASVIALELLNSGYEF
Sbjct: 121  LTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEF 180

Query: 687  DEGSIIFNRFRSVISYKTEEKPIFSLDTVASAESMSIYDDIDADVLRNYQEYSLANIIYY 866
            DEGSIIFN+FRSVISYKTEEKPIFSL+TVASA+SMSIYDDIDADVL+NYQEY+LANIIYY
Sbjct: 181  DEGSIIFNKFRSVISYKTEEKPIFSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYY 240

Query: 867  SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALE 1040
            SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL+
Sbjct: 241  SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALD 298


>ref|NP_005165.1| ATP synthase subunit gamma, mitochondrial isoform H (heart) precursor
            [Homo sapiens].
          Length = 297

 Score =  542 bits (1396), Expect = e-154
 Identities = 277/297 (93%), Positives = 292/297 (98%)
 Frame = +3

Query: 147  MFSRAGVAGLSAWAVQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE 326
            MFSRAGVAGLSAW +QPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE
Sbjct: 1    MFSRAGVAGLSAWTLQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE 60

Query: 327  RDLKPARVYGIGSLALYEKADIKVPEDKKKHLIIGVSSDRGLCGAIHSSVAKQIKSEVAN 506
            R+LKPAR+YG+GSLALYEKADIK PEDKKKHL+IGVSSDRGLCGAIHSS+AKQ+KSEVA 
Sbjct: 61   RELKPARIYGLGSLALYEKADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVAT 120

Query: 507  LTAAGKEVKIVGVGDKIRGILHRTHSDQFLVTFKEVGRKPPTFGDASVIALELLNSGYEF 686
            LTAAGKEV +VG+GDKIRGIL+RTHSDQFLV FKEVGRKPPTFGDASVIALELLNSGYEF
Sbjct: 121  LTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEF 180

Query: 687  DEGSIIFNRFRSVISYKTEEKPIFSLDTVASAESMSIYDDIDADVLRNYQEYSLANIIYY 866
            DEGSIIFN+FRSVISYKTEEKPIFSL+TVASA+SMSIYDDIDADVL+NYQEY+LANIIYY
Sbjct: 181  DEGSIIFNKFRSVISYKTEEKPIFSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYY 240

Query: 867  SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL 1037
            SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL
Sbjct: 241  SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL 297


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,007,097
Number of extensions: 1078091
Number of successful extensions: 3432
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3421
Number of HSP's successfully gapped: 2
Length of query: 394
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 289
Effective length of database: 14,835,944
Effective search space: 4287587816
Effective search space used: 4287587816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001889
         (1183 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_065640.2| ATP synthase subunit gamma, mitochondrial isofo...   529   e-150
Alignment   gi|NP_001106209.1| ATP synthase subunit gamma, mitochondrial is...   489   e-138

>ref|NP_065640.2| ATP synthase subunit gamma, mitochondrial isoform a [Mus musculus].
          Length = 298

 Score =  529 bits (1362), Expect = e-150
 Identities = 272/298 (91%), Positives = 291/298 (97%)
 Frame = +3

Query: 147  MFSRAGVAGLSAWAVQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE 326
            MFSRA V GLSA AVQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE
Sbjct: 1    MFSRASVVGLSACAVQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE 60

Query: 327  RDLKPARVYGIGSLALYEKADIKVPEDKKKHLIIGVSSDRGLCGAIHSSVAKQIKSEVAN 506
            R+LKPARVYG GSLALYEKADIK PEDKKKHLIIGVSSDRGLCGAIHSSVAKQ+K+EVA 
Sbjct: 61   RELKPARVYGTGSLALYEKADIKAPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKNEVAA 120

Query: 507  LTAAGKEVKIVGVGDKIRGILHRTHSDQFLVTFKEVGRKPPTFGDASVIALELLNSGYEF 686
            LTAAGKEV IVGVG+KI+GIL+RTHSDQFLV+FK+VGRKPPTFGDASVIALELLNSGYEF
Sbjct: 121  LTAAGKEVMIVGVGEKIKGILYRTHSDQFLVSFKDVGRKPPTFGDASVIALELLNSGYEF 180

Query: 687  DEGSIIFNRFRSVISYKTEEKPIFSLDTVASAESMSIYDDIDADVLRNYQEYSLANIIYY 866
            DEGSIIFN+F+SVISYKTEEKPIFSL+T+A+AE+MSIYDDIDADVL+NYQEY+LAN+IYY
Sbjct: 181  DEGSIIFNQFKSVISYKTEEKPIFSLNTIATAETMSIYDDIDADVLQNYQEYNLANLIYY 240

Query: 867  SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALE 1040
            SLKESTTSEQSARMTAMDNASKNAS+MIDKLTLTFNRTRQAVITKELIEIISGAAAL+
Sbjct: 241  SLKESTTSEQSARMTAMDNASKNASDMIDKLTLTFNRTRQAVITKELIEIISGAAALD 298


>ref|NP_001106209.1| ATP synthase subunit gamma, mitochondrial isoform b [Mus musculus].
          Length = 274

 Score =  489 bits (1258), Expect = e-138
 Identities = 251/274 (91%), Positives = 270/274 (98%)
 Frame = +3

Query: 219  MATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERDLKPARVYGIGSLALYEKADIKV 398
            MATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAER+LKPARVYG GSLALYEKADIK 
Sbjct: 1    MATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGTGSLALYEKADIKA 60

Query: 399  PEDKKKHLIIGVSSDRGLCGAIHSSVAKQIKSEVANLTAAGKEVKIVGVGDKIRGILHRT 578
            PEDKKKHLIIGVSSDRGLCGAIHSSVAKQ+K+EVA LTAAGKEV IVGVG+KI+GIL+RT
Sbjct: 61   PEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKNEVAALTAAGKEVMIVGVGEKIKGILYRT 120

Query: 579  HSDQFLVTFKEVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNRFRSVISYKTEEKPIF 758
            HSDQFLV+FK+VGRKPPTFGDASVIALELLNSGYEFDEGSIIFN+F+SVISYKTEEKPIF
Sbjct: 121  HSDQFLVSFKDVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNQFKSVISYKTEEKPIF 180

Query: 759  SLDTVASAESMSIYDDIDADVLRNYQEYSLANIIYYSLKESTTSEQSARMTAMDNASKNA 938
            SL+T+A+AE+MSIYDDIDADVL+NYQEY+LAN+IYYSLKESTTSEQSARMTAMDNASKNA
Sbjct: 181  SLNTIATAETMSIYDDIDADVLQNYQEYNLANLIYYSLKESTTSEQSARMTAMDNASKNA 240

Query: 939  SEMIDKLTLTFNRTRQAVITKELIEIISGAAALE 1040
            S+MIDKLTLTFNRTRQAVITKELIEIISGAAAL+
Sbjct: 241  SDMIDKLTLTFNRTRQAVITKELIEIISGAAALD 274


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,670,549
Number of extensions: 912021
Number of successful extensions: 2920
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2898
Number of HSP's successfully gapped: 2
Length of query: 394
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 291
Effective length of database: 12,523,851
Effective search space: 3644440641
Effective search space used: 3644440641
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001889
         (1183 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done

 ***** No hits found ******


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,399,098
Number of extensions: 857142
Number of successful extensions: 2218
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 2208
Number of HSP's successfully gapped: 0
Length of query: 394
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 293
Effective length of database: 8,829,335
Effective search space: 2586995155
Effective search space used: 2586995155
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001889
         (1183 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL892387.1| Sus scrofa unplaced genomic scaffold chrU_scaffol...   192   3e-46

>gb|GL892387.1| Sus scrofa unplaced genomic scaffold chrU_scaffold1257
          Length = 1725

 Score =  192 bits (97), Expect = 3e-46
 Identities = 97/97 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1071 aggtaaagaagaattcagccagctggctgtttttagctttctgctgtccttgtcagaaga 1130
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802  aggtaaagaagaattcagccagctggctgtttttagctttctgctgtccttgtcagaaga 743

                                                 
Query: 1131 agttgtcgttccattgtctaaattactaaaggcagca 1167
            |||||||||||||||||||||||||||||||||||||
Sbjct: 742  agttgtcgttccattgtctaaattactaaaggcagca 706



 Score = 79.8 bits (40), Expect = 3e-12
 Identities = 40/40 (100%)
 Strand = Plus / Minus

                                                    
Query: 1037 ggagtagtgaaatcgagttccgtccacagacaagaggtaa 1076
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1502 ggagtagtgaaatcgagttccgtccacagacaagaggtaa 1463


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,605,989
Number of extensions: 158
Number of successful extensions: 158
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 2
Length of query: 1183
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1162
Effective length of database: 2,808,413,156
Effective search space: 3263376087272
Effective search space used: 3263376087272
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)