Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001889
(1183 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068604.1| ATP synthase subunit gamma, mitochondrial pr... 552 e-157
Alignment gi|XP_001251205.2| PREDICTED: ATP synthase subunit gamma, mitoc... 225 7e-59
>ref|NP_001068604.1| ATP synthase subunit gamma, mitochondrial precursor [Bos taurus].
Length = 298
Score = 552 bits (1423), Expect = e-157
Identities = 284/298 (95%), Positives = 292/298 (97%)
Frame = +3
Query: 147 MFSRAGVAGLSAWAVQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE 326
MFSRAGVAGLSAW VQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE
Sbjct: 1 MFSRAGVAGLSAWTVQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE 60
Query: 327 RDLKPARVYGIGSLALYEKADIKVPEDKKKHLIIGVSSDRGLCGAIHSSVAKQIKSEVAN 506
R+LKPARVYG+GSLALYEKADIK PEDKKKHLIIGVSSDRGLCGAIHSSVAKQ+KSE AN
Sbjct: 61 RELKPARVYGVGSLALYEKADIKTPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKSEAAN 120
Query: 507 LTAAGKEVKIVGVGDKIRGILHRTHSDQFLVTFKEVGRKPPTFGDASVIALELLNSGYEF 686
L AAGKEVKI+GVGDKIR ILHRTHSDQFLVTFKEVGR+PPTFGDASVIALELLNSGYEF
Sbjct: 121 LAAAGKEVKIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEF 180
Query: 687 DEGSIIFNRFRSVISYKTEEKPIFSLDTVASAESMSIYDDIDADVLRNYQEYSLANIIYY 866
DEGSIIFNRFRSVISYKTEEKPIFSLDT++SAESMSIYDDIDADVLRNYQEYSLANIIYY
Sbjct: 181 DEGSIIFNRFRSVISYKTEEKPIFSLDTISSAESMSIYDDIDADVLRNYQEYSLANIIYY 240
Query: 867 SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALE 1040
SLKESTTS QSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL+
Sbjct: 241 SLKESTTSGQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALD 298
>ref|XP_001251205.2| PREDICTED: ATP synthase subunit gamma, mitochondrial-like, partial
[Bos taurus].
Length = 197
Score = 225 bits (573), Expect = 7e-59
Identities = 115/123 (93%), Positives = 119/123 (96%)
Frame = +3
Query: 204 IQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERDLKPARVYGIGSLALYEK 383
IQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAER+LKPARVYG+GSLALYEK
Sbjct: 75 IQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEK 134
Query: 384 ADIKVPEDKKKHLIIGVSSDRGLCGAIHSSVAKQIKSEVANLTAAGKEVKIVGVGDKIRG 563
ADIK PEDKKKHLIIGVSSDRGLCGAIHSSVAKQ+KSE ANL AAGKEVKI+GVGDKIR
Sbjct: 135 ADIKTPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKIRS 194
Query: 564 ILH 572
ILH
Sbjct: 195 ILH 197
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,408,321
Number of extensions: 1147420
Number of successful extensions: 3349
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3334
Number of HSP's successfully gapped: 2
Length of query: 394
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 290
Effective length of database: 14,240,222
Effective search space: 4129664380
Effective search space used: 4129664380
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001889
(1183 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535193.2| PREDICTED: similar to ATP synthase, H+ transpor... 551 e-157
Alignment gi|XP_858232.1| PREDICTED: similar to ATP synthase, H+ transpor... 550 e-157
Alignment gi|XP_858275.1| PREDICTED: similar to ATP synthase, H+ transpor... 264 1e-70
Alignment gi|XP_850961.1| PREDICTED: similar to ATP synthase, H+ transpor... 181 9e-46
>ref|XP_535193.2| PREDICTED: similar to ATP synthase, H+ transporting, mitochondrial F1
complex, gamma subunit isoform L (liver) precursor
isoform 1 [Canis familiaris].
Length = 298
Score = 551 bits (1420), Expect = e-157
Identities = 283/298 (94%), Positives = 295/298 (98%)
Frame = +3
Query: 147 MFSRAGVAGLSAWAVQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE 326
MFSRAGVAGLSAWAVQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE
Sbjct: 1 MFSRAGVAGLSAWAVQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE 60
Query: 327 RDLKPARVYGIGSLALYEKADIKVPEDKKKHLIIGVSSDRGLCGAIHSSVAKQIKSEVAN 506
R+LKPARVYG+GSLALYEKADIKVPEDKKKHL+IGVSSDRGLCGAIHSSVAKQ+K+EVA
Sbjct: 61 RELKPARVYGVGSLALYEKADIKVPEDKKKHLLIGVSSDRGLCGAIHSSVAKQMKNEVAT 120
Query: 507 LTAAGKEVKIVGVGDKIRGILHRTHSDQFLVTFKEVGRKPPTFGDASVIALELLNSGYEF 686
L AAGKEV +VG+GDKIRGILHRTHSDQFLV+FKEVGRKPPTFGDASVIALELLNSGYEF
Sbjct: 121 LQAAGKEVMLVGIGDKIRGILHRTHSDQFLVSFKEVGRKPPTFGDASVIALELLNSGYEF 180
Query: 687 DEGSIIFNRFRSVISYKTEEKPIFSLDTVASAESMSIYDDIDADVLRNYQEYSLANIIYY 866
DEGSIIFNRFRSVISYKTEEKPIFSL+TVASAESMSIYDDIDADVL+NYQEY+LANIIYY
Sbjct: 181 DEGSIIFNRFRSVISYKTEEKPIFSLETVASAESMSIYDDIDADVLQNYQEYNLANIIYY 240
Query: 867 SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALE 1040
SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL+
Sbjct: 241 SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALD 298
>ref|XP_858232.1| PREDICTED: similar to ATP synthase, H+ transporting, mitochondrial F1
complex, gamma subunit isoform H (heart) precursor
isoform 3 [Canis familiaris].
Length = 297
Score = 550 bits (1418), Expect = e-157
Identities = 283/297 (95%), Positives = 294/297 (98%)
Frame = +3
Query: 147 MFSRAGVAGLSAWAVQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE 326
MFSRAGVAGLSAWAVQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE
Sbjct: 1 MFSRAGVAGLSAWAVQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE 60
Query: 327 RDLKPARVYGIGSLALYEKADIKVPEDKKKHLIIGVSSDRGLCGAIHSSVAKQIKSEVAN 506
R+LKPARVYG+GSLALYEKADIKVPEDKKKHL+IGVSSDRGLCGAIHSSVAKQ+K+EVA
Sbjct: 61 RELKPARVYGVGSLALYEKADIKVPEDKKKHLLIGVSSDRGLCGAIHSSVAKQMKNEVAT 120
Query: 507 LTAAGKEVKIVGVGDKIRGILHRTHSDQFLVTFKEVGRKPPTFGDASVIALELLNSGYEF 686
L AAGKEV +VG+GDKIRGILHRTHSDQFLV+FKEVGRKPPTFGDASVIALELLNSGYEF
Sbjct: 121 LQAAGKEVMLVGIGDKIRGILHRTHSDQFLVSFKEVGRKPPTFGDASVIALELLNSGYEF 180
Query: 687 DEGSIIFNRFRSVISYKTEEKPIFSLDTVASAESMSIYDDIDADVLRNYQEYSLANIIYY 866
DEGSIIFNRFRSVISYKTEEKPIFSL+TVASAESMSIYDDIDADVL+NYQEY+LANIIYY
Sbjct: 181 DEGSIIFNRFRSVISYKTEEKPIFSLETVASAESMSIYDDIDADVLQNYQEYNLANIIYY 240
Query: 867 SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL 1037
SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL
Sbjct: 241 SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL 297
>ref|XP_858275.1| PREDICTED: similar to ATP synthase, H+ transporting, mitochondrial
F1 complex, gamma subunit isoform H (heart) precursor
isoform 4 [Canis familiaris].
Length = 143
Score = 264 bits (675), Expect = 1e-70
Identities = 133/143 (93%), Positives = 140/143 (97%)
Frame = +3
Query: 147 MFSRAGVAGLSAWAVQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE 326
MFSRAGVAGLSAWAVQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE
Sbjct: 1 MFSRAGVAGLSAWAVQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE 60
Query: 327 RDLKPARVYGIGSLALYEKADIKVPEDKKKHLIIGVSSDRGLCGAIHSSVAKQIKSEVAN 506
R+LKPARVYG+GSLALYEKADIKVPEDKKKHL+IGVSSDRGLCGAIHSSVAKQ+K+EVA
Sbjct: 61 RELKPARVYGVGSLALYEKADIKVPEDKKKHLLIGVSSDRGLCGAIHSSVAKQMKNEVAT 120
Query: 507 LTAAGKEVKIVGVGDKIRGILHR 575
L AAGKEV +VG+GDKIRGILHR
Sbjct: 121 LQAAGKEVMLVGIGDKIRGILHR 143
>ref|XP_850961.1| PREDICTED: similar to ATP synthase, H+ transporting, mitochondrial
F1 complex, gamma subunit isoform H (heart) precursor
[Canis familiaris].
Length = 132
Score = 181 bits (460), Expect = 9e-46
Identities = 92/115 (80%), Positives = 102/115 (88%)
Frame = +3
Query: 432 VSSDRGLCGAIHSSVAKQIKSEVANLTAAGKEVKIVGVGDKIRGILHRTHSDQFLVTFKE 611
+SSD+GLCGAIHSS AKQ+K+EVA AA KEV +VG+GDKIRGI HRTHSDQFLV+FKE
Sbjct: 1 MSSDQGLCGAIHSSAAKQMKNEVATFKAARKEVMLVGIGDKIRGIPHRTHSDQFLVSFKE 60
Query: 612 VGRKPPTFGDASVIALELLNSGYEFDEGSIIFNRFRSVISYKTEEKPIFSLDTVA 776
GRK PTFGDAS+IALELLNSGYEFDEGSIIFN FRSVI KTEEKPIFS ++VA
Sbjct: 61 GGRKTPTFGDASIIALELLNSGYEFDEGSIIFNWFRSVIYCKTEEKPIFSPESVA 115
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,804,840
Number of extensions: 1094126
Number of successful extensions: 3573
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3551
Number of HSP's successfully gapped: 4
Length of query: 394
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 289
Effective length of database: 15,374,224
Effective search space: 4443150736
Effective search space used: 4443150736
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001889
(1183 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001001973.1| ATP synthase subunit gamma, mitochondrial is... 543 e-154
Alignment gi|NP_005165.1| ATP synthase subunit gamma, mitochondrial isofo... 542 e-154
>ref|NP_001001973.1| ATP synthase subunit gamma, mitochondrial isoform L (liver) precursor
[Homo sapiens].
Length = 298
Score = 543 bits (1398), Expect = e-154
Identities = 277/298 (92%), Positives = 293/298 (98%)
Frame = +3
Query: 147 MFSRAGVAGLSAWAVQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE 326
MFSRAGVAGLSAW +QPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE
Sbjct: 1 MFSRAGVAGLSAWTLQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE 60
Query: 327 RDLKPARVYGIGSLALYEKADIKVPEDKKKHLIIGVSSDRGLCGAIHSSVAKQIKSEVAN 506
R+LKPAR+YG+GSLALYEKADIK PEDKKKHL+IGVSSDRGLCGAIHSS+AKQ+KSEVA
Sbjct: 61 RELKPARIYGLGSLALYEKADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVAT 120
Query: 507 LTAAGKEVKIVGVGDKIRGILHRTHSDQFLVTFKEVGRKPPTFGDASVIALELLNSGYEF 686
LTAAGKEV +VG+GDKIRGIL+RTHSDQFLV FKEVGRKPPTFGDASVIALELLNSGYEF
Sbjct: 121 LTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEF 180
Query: 687 DEGSIIFNRFRSVISYKTEEKPIFSLDTVASAESMSIYDDIDADVLRNYQEYSLANIIYY 866
DEGSIIFN+FRSVISYKTEEKPIFSL+TVASA+SMSIYDDIDADVL+NYQEY+LANIIYY
Sbjct: 181 DEGSIIFNKFRSVISYKTEEKPIFSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYY 240
Query: 867 SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALE 1040
SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL+
Sbjct: 241 SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALD 298
>ref|NP_005165.1| ATP synthase subunit gamma, mitochondrial isoform H (heart) precursor
[Homo sapiens].
Length = 297
Score = 542 bits (1396), Expect = e-154
Identities = 277/297 (93%), Positives = 292/297 (98%)
Frame = +3
Query: 147 MFSRAGVAGLSAWAVQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE 326
MFSRAGVAGLSAW +QPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE
Sbjct: 1 MFSRAGVAGLSAWTLQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE 60
Query: 327 RDLKPARVYGIGSLALYEKADIKVPEDKKKHLIIGVSSDRGLCGAIHSSVAKQIKSEVAN 506
R+LKPAR+YG+GSLALYEKADIK PEDKKKHL+IGVSSDRGLCGAIHSS+AKQ+KSEVA
Sbjct: 61 RELKPARIYGLGSLALYEKADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVAT 120
Query: 507 LTAAGKEVKIVGVGDKIRGILHRTHSDQFLVTFKEVGRKPPTFGDASVIALELLNSGYEF 686
LTAAGKEV +VG+GDKIRGIL+RTHSDQFLV FKEVGRKPPTFGDASVIALELLNSGYEF
Sbjct: 121 LTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEF 180
Query: 687 DEGSIIFNRFRSVISYKTEEKPIFSLDTVASAESMSIYDDIDADVLRNYQEYSLANIIYY 866
DEGSIIFN+FRSVISYKTEEKPIFSL+TVASA+SMSIYDDIDADVL+NYQEY+LANIIYY
Sbjct: 181 DEGSIIFNKFRSVISYKTEEKPIFSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYY 240
Query: 867 SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL 1037
SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL
Sbjct: 241 SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL 297
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,007,097
Number of extensions: 1078091
Number of successful extensions: 3432
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3421
Number of HSP's successfully gapped: 2
Length of query: 394
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 289
Effective length of database: 14,835,944
Effective search space: 4287587816
Effective search space used: 4287587816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001889
(1183 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_065640.2| ATP synthase subunit gamma, mitochondrial isofo... 529 e-150
Alignment gi|NP_001106209.1| ATP synthase subunit gamma, mitochondrial is... 489 e-138
>ref|NP_065640.2| ATP synthase subunit gamma, mitochondrial isoform a [Mus musculus].
Length = 298
Score = 529 bits (1362), Expect = e-150
Identities = 272/298 (91%), Positives = 291/298 (97%)
Frame = +3
Query: 147 MFSRAGVAGLSAWAVQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE 326
MFSRA V GLSA AVQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE
Sbjct: 1 MFSRASVVGLSACAVQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE 60
Query: 327 RDLKPARVYGIGSLALYEKADIKVPEDKKKHLIIGVSSDRGLCGAIHSSVAKQIKSEVAN 506
R+LKPARVYG GSLALYEKADIK PEDKKKHLIIGVSSDRGLCGAIHSSVAKQ+K+EVA
Sbjct: 61 RELKPARVYGTGSLALYEKADIKAPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKNEVAA 120
Query: 507 LTAAGKEVKIVGVGDKIRGILHRTHSDQFLVTFKEVGRKPPTFGDASVIALELLNSGYEF 686
LTAAGKEV IVGVG+KI+GIL+RTHSDQFLV+FK+VGRKPPTFGDASVIALELLNSGYEF
Sbjct: 121 LTAAGKEVMIVGVGEKIKGILYRTHSDQFLVSFKDVGRKPPTFGDASVIALELLNSGYEF 180
Query: 687 DEGSIIFNRFRSVISYKTEEKPIFSLDTVASAESMSIYDDIDADVLRNYQEYSLANIIYY 866
DEGSIIFN+F+SVISYKTEEKPIFSL+T+A+AE+MSIYDDIDADVL+NYQEY+LAN+IYY
Sbjct: 181 DEGSIIFNQFKSVISYKTEEKPIFSLNTIATAETMSIYDDIDADVLQNYQEYNLANLIYY 240
Query: 867 SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALE 1040
SLKESTTSEQSARMTAMDNASKNAS+MIDKLTLTFNRTRQAVITKELIEIISGAAAL+
Sbjct: 241 SLKESTTSEQSARMTAMDNASKNASDMIDKLTLTFNRTRQAVITKELIEIISGAAALD 298
>ref|NP_001106209.1| ATP synthase subunit gamma, mitochondrial isoform b [Mus musculus].
Length = 274
Score = 489 bits (1258), Expect = e-138
Identities = 251/274 (91%), Positives = 270/274 (98%)
Frame = +3
Query: 219 MATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERDLKPARVYGIGSLALYEKADIKV 398
MATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAER+LKPARVYG GSLALYEKADIK
Sbjct: 1 MATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGTGSLALYEKADIKA 60
Query: 399 PEDKKKHLIIGVSSDRGLCGAIHSSVAKQIKSEVANLTAAGKEVKIVGVGDKIRGILHRT 578
PEDKKKHLIIGVSSDRGLCGAIHSSVAKQ+K+EVA LTAAGKEV IVGVG+KI+GIL+RT
Sbjct: 61 PEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKNEVAALTAAGKEVMIVGVGEKIKGILYRT 120
Query: 579 HSDQFLVTFKEVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNRFRSVISYKTEEKPIF 758
HSDQFLV+FK+VGRKPPTFGDASVIALELLNSGYEFDEGSIIFN+F+SVISYKTEEKPIF
Sbjct: 121 HSDQFLVSFKDVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNQFKSVISYKTEEKPIF 180
Query: 759 SLDTVASAESMSIYDDIDADVLRNYQEYSLANIIYYSLKESTTSEQSARMTAMDNASKNA 938
SL+T+A+AE+MSIYDDIDADVL+NYQEY+LAN+IYYSLKESTTSEQSARMTAMDNASKNA
Sbjct: 181 SLNTIATAETMSIYDDIDADVLQNYQEYNLANLIYYSLKESTTSEQSARMTAMDNASKNA 240
Query: 939 SEMIDKLTLTFNRTRQAVITKELIEIISGAAALE 1040
S+MIDKLTLTFNRTRQAVITKELIEIISGAAAL+
Sbjct: 241 SDMIDKLTLTFNRTRQAVITKELIEIISGAAALD 274
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,670,549
Number of extensions: 912021
Number of successful extensions: 2920
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2898
Number of HSP's successfully gapped: 2
Length of query: 394
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 291
Effective length of database: 12,523,851
Effective search space: 3644440641
Effective search space used: 3644440641
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001889
(1183 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,399,098
Number of extensions: 857142
Number of successful extensions: 2218
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 2208
Number of HSP's successfully gapped: 0
Length of query: 394
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 293
Effective length of database: 8,829,335
Effective search space: 2586995155
Effective search space used: 2586995155
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001889
(1183 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL892387.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 192 3e-46
>gb|GL892387.1| Sus scrofa unplaced genomic scaffold chrU_scaffold1257
Length = 1725
Score = 192 bits (97), Expect = 3e-46
Identities = 97/97 (100%)
Strand = Plus / Minus
Query: 1071 aggtaaagaagaattcagccagctggctgtttttagctttctgctgtccttgtcagaaga 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 aggtaaagaagaattcagccagctggctgtttttagctttctgctgtccttgtcagaaga 743
Query: 1131 agttgtcgttccattgtctaaattactaaaggcagca 1167
|||||||||||||||||||||||||||||||||||||
Sbjct: 742 agttgtcgttccattgtctaaattactaaaggcagca 706
Score = 79.8 bits (40), Expect = 3e-12
Identities = 40/40 (100%)
Strand = Plus / Minus
Query: 1037 ggagtagtgaaatcgagttccgtccacagacaagaggtaa 1076
||||||||||||||||||||||||||||||||||||||||
Sbjct: 1502 ggagtagtgaaatcgagttccgtccacagacaagaggtaa 1463
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,605,989
Number of extensions: 158
Number of successful extensions: 158
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 2
Length of query: 1183
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1162
Effective length of database: 2,808,413,156
Effective search space: 3263376087272
Effective search space used: 3263376087272
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)