Animal-Genome cDNA 20110601C-001896


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001896
         (958 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_002698763.1| PREDICTED: transforming, acidic coiled-coil ...   421   e-118
Alignment   gi|XP_583551.3| PREDICTED: transforming, acidic coiled-coil con...   421   e-118
Alignment   gi|XP_002703282.1| PREDICTED: transforming, acidic coiled-coil ...   198   7e-51
Alignment   gi|NP_001093775.1| transforming, acidic coiled-coil containing ...   104   1e-22

>ref|XP_002698763.1| PREDICTED: transforming, acidic coiled-coil containing protein 1 [Bos
            taurus].
          Length = 742

 Score =  421 bits (1081), Expect = e-118
 Identities = 225/282 (79%), Positives = 237/282 (84%), Gaps = 29/282 (10%)
 Frame = +3

Query: 198  SKTSLHRSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQK 377
            +K+ L  SGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST+  QK
Sbjct: 395  AKSRLITSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTSSVQK 454

Query: 378  PTGAEGKG-----------------------------MEKEMSLKMEKDGSTMPGTLEAP 470
            PTGAEGKG                              EK+   KMEKDGST+P  LE+P
Sbjct: 455  PTGAEGKGEPEDDLEYFECSNVPVSAINHAFSSSEAGSEKDPCQKMEKDGSTVPALLESP 514

Query: 471  MEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKRKYEETRQEVLE 650
            +EK PVSVACG ESPLDGICLSESDKTAVLTLIREEIITKEIEANEWK+KYEETRQEVLE
Sbjct: 515  VEKTPVSVACGVESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLE 574

Query: 651  MRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYEN 830
            MRKIVAEYEKTIAQMIEDEQR SM+SQKSFQQL+MEKEQALADLNSVERSLSDLFRRYEN
Sbjct: 575  MRKIVAEYEKTIAQMIEDEQRTSMSSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYEN 634

Query: 831  LKGVLEGFKKNEEALKKCAQDYLARV*QEEQRYQPLKINAEK 956
            LKGVLEGFKKNEEALKKCAQDYLARV QEEQRYQ LKI+AE+
Sbjct: 635  LKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEE 676


>ref|XP_583551.3| PREDICTED: transforming, acidic coiled-coil containing protein 1 [Bos
            taurus].
          Length = 666

 Score =  421 bits (1081), Expect = e-118
 Identities = 225/282 (79%), Positives = 237/282 (84%), Gaps = 29/282 (10%)
 Frame = +3

Query: 198  SKTSLHRSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQK 377
            +K+ L  SGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST+  QK
Sbjct: 319  AKSRLITSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTSSVQK 378

Query: 378  PTGAEGKG-----------------------------MEKEMSLKMEKDGSTMPGTLEAP 470
            PTGAEGKG                              EK+   KMEKDGST+P  LE+P
Sbjct: 379  PTGAEGKGEPEDDLEYFECSNVPVSAINHAFSSSEAGSEKDPCQKMEKDGSTVPALLESP 438

Query: 471  MEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKRKYEETRQEVLE 650
            +EK PVSVACG ESPLDGICLSESDKTAVLTLIREEIITKEIEANEWK+KYEETRQEVLE
Sbjct: 439  VEKTPVSVACGVESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLE 498

Query: 651  MRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYEN 830
            MRKIVAEYEKTIAQMIEDEQR SM+SQKSFQQL+MEKEQALADLNSVERSLSDLFRRYEN
Sbjct: 499  MRKIVAEYEKTIAQMIEDEQRTSMSSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYEN 558

Query: 831  LKGVLEGFKKNEEALKKCAQDYLARV*QEEQRYQPLKINAEK 956
            LKGVLEGFKKNEEALKKCAQDYLARV QEEQRYQ LKI+AE+
Sbjct: 559  LKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEE 600


>ref|XP_002703282.1| PREDICTED: transforming, acidic coiled-coil containing protein 2 [Bos
            taurus].
          Length = 2893

 Score =  198 bits (503), Expect = 7e-51
 Identities = 99/145 (68%), Positives = 120/145 (82%)
 Frame = +3

Query: 522  GICLSESDKTAVLTLIREEIITKEIEANEWKRKYEETRQEVLEMRKIVAEYEKTIAQMIE 701
            G+   + D  + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 2684 GLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 2743

Query: 702  DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK 881
            DEQR    S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE LKK
Sbjct: 2744 DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKK 2803

Query: 882  CAQDYLARV*QEEQRYQPLKINAEK 956
            CAQ+YL+RV +EEQRYQ LK++AE+
Sbjct: 2804 CAQEYLSRVKKEEQRYQALKVHAEE 2828


>ref|NP_001093775.1| transforming, acidic coiled-coil containing protein 3 [Bos taurus].
          Length = 810

 Score =  104 bits (260), Expect = 1e-22
 Identities = 49/108 (45%), Positives = 77/108 (71%)
 Frame = +3

Query: 633 RQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDL 812
           ++ +LEM KI+  +E T+ Q++E+ Q+    ++   Q++  EK Q  ADL+S+E+S SDL
Sbjct: 638 QERLLEMGKIMDSFEGTVYQVMEESQKQKELTKAEMQKVLKEKAQLTADLHSMEKSFSDL 697

Query: 813 FRRYENLKGVLEGFKKNEEALKKCAQDYLARV*QEEQRYQPLKINAEK 956
           F+R+E  K V+EG++ NEE+LKKC +DY+ RV +E Q+YQ LK  AE+
Sbjct: 698 FKRFEKQKEVIEGYRTNEESLKKCVEDYIERVEKEAQKYQALKAQAEE 745


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,440,954
Number of extensions: 940382
Number of successful extensions: 4523
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4508
Number of HSP's successfully gapped: 4
Length of query: 319
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 217
Effective length of database: 14,306,398
Effective search space: 3104488366
Effective search space used: 3104488366
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001896
         (958 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_856593.1| PREDICTED: similar to transforming acidic coile...   437   e-123
Alignment   gi|XP_532800.2| PREDICTED: similar to transforming, acidic coil...   435   e-122
Alignment   gi|XP_856634.1| PREDICTED: similar to transforming, acidic coil...   422   e-118
Alignment   gi|XP_848665.1| PREDICTED: similar to transforming, acidic coil...   419   e-117
Alignment   gi|XP_535042.2| PREDICTED: similar to transforming, acidic coil...   198   7e-51
Alignment   gi|XP_536226.2| PREDICTED: similar to transforming acidic coile...   102   7e-22
Alignment   gi|XP_852295.1| PREDICTED: similar to Transforming acidic coile...    78   1e-14

>ref|XP_856593.1| PREDICTED: similar to transforming acidic coiled-coil containing
           protein 1 short isoform isoform 3 [Canis familiaris].
          Length = 366

 Score =  437 bits (1125), Expect = e-123
 Identities = 235/300 (78%), Positives = 245/300 (81%)
 Frame = +3

Query: 57  ATVAGGANGREETRGPPPTSPKGSKAREQVLVWTADMFPLQSQLGINSKTSLHRSGCKVK 236
           + V GG  G EE  GP                      P        +K+   RSGCKVK
Sbjct: 20  SAVRGGGAGEEEAGGPEGD-------------------PEDEDSQAETKSLSFRSGCKVK 60

Query: 237 KYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQKPTGAEGKGMEKEM 416
           KYE QSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST+ GQK  GAE KG+EKEM
Sbjct: 61  KYETQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTSSGQKSAGAEVKGIEKEM 120

Query: 417 SLKMEKDGSTMPGTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEI 596
             KMEKDGS M G LE+ MEKAPVSVAC GESPLDGICLSESDKTAVLTLIREEIITKEI
Sbjct: 121 CQKMEKDGSAMTGLLESSMEKAPVSVACEGESPLDGICLSESDKTAVLTLIREEIITKEI 180

Query: 597 EANEWKRKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALA 776
           EANEWK+KYEETRQEVLEMRKIVAEYEKTIAQMIEDEQR SMTSQKSFQQL+MEKEQALA
Sbjct: 181 EANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRTSMTSQKSFQQLTMEKEQALA 240

Query: 777 DLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARV*QEEQRYQPLKINAEK 956
           DLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARV QEEQRYQ LKI+AE+
Sbjct: 241 DLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEE 300


>ref|XP_532800.2| PREDICTED: similar to transforming, acidic coiled-coil containing
            protein 1 isoform 1 [Canis familiaris].
          Length = 771

 Score =  435 bits (1118), Expect = e-122
 Identities = 226/253 (89%), Positives = 235/253 (92%)
 Frame = +3

Query: 198  SKTSLHRSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQK 377
            +K+ L  SGCKVKKYE QSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST+ GQK
Sbjct: 453  AKSRLITSGCKVKKYETQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTSSGQK 512

Query: 378  PTGAEGKGMEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGESPLDGICLSESDKTAV 557
              GAE KG+EKEM  KMEKDGS M G LE+ MEKAPVSVAC GESPLDGICLSESDKTAV
Sbjct: 513  SAGAEVKGIEKEMCQKMEKDGSAMTGLLESSMEKAPVSVACEGESPLDGICLSESDKTAV 572

Query: 558  LTLIREEIITKEIEANEWKRKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKS 737
            LTLIREEIITKEIEANEWK+KYEETRQEVLEMRKIVAEYEKTIAQMIEDEQR SMTSQKS
Sbjct: 573  LTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRTSMTSQKS 632

Query: 738  FQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARV*QE 917
            FQQL+MEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARV QE
Sbjct: 633  FQQLTMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQE 692

Query: 918  EQRYQPLKINAEK 956
            EQRYQ LKI+AE+
Sbjct: 693  EQRYQALKIHAEE 705


>ref|XP_856634.1| PREDICTED: similar to transforming, acidic coiled-coil containing
           protein 1 isoform 4 [Canis familiaris].
          Length = 395

 Score =  422 bits (1085), Expect = e-118
 Identities = 235/329 (71%), Positives = 245/329 (74%), Gaps = 29/329 (8%)
 Frame = +3

Query: 57  ATVAGGANGREETRGPPPTSPKGSKAREQVLVWTADMFPLQSQLGINSKTSLHRSGCKVK 236
           + V GG  G EE  GP                      P        +K+   RSGCKVK
Sbjct: 20  SAVRGGGAGEEEAGGPEGD-------------------PEDEDSQAETKSLSFRSGCKVK 60

Query: 237 KYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQKPTGAEGKG----- 401
           KYE QSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST+ GQK  GAE KG     
Sbjct: 61  KYETQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTSSGQKSAGAEVKGEPEED 120

Query: 402 ------------------------MEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGE 509
                                   +EKEM  KMEKDGS M G LE+ MEKAPVSVAC GE
Sbjct: 121 LEYFECSNVPVSTINHAFSSSEAGIEKEMCQKMEKDGSAMTGLLESSMEKAPVSVACEGE 180

Query: 510 SPLDGICLSESDKTAVLTLIREEIITKEIEANEWKRKYEETRQEVLEMRKIVAEYEKTIA 689
           SPLDGICLSESDKTAVLTLIREEIITKEIEANEWK+KYEETRQEVLEMRKIVAEYEKTIA
Sbjct: 181 SPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIA 240

Query: 690 QMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEE 869
           QMIEDEQR SMTSQKSFQQL+MEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEE
Sbjct: 241 QMIEDEQRTSMTSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEE 300

Query: 870 ALKKCAQDYLARV*QEEQRYQPLKINAEK 956
           ALKKCAQDYLARV QEEQRYQ LKI+AE+
Sbjct: 301 ALKKCAQDYLARVKQEEQRYQALKIHAEE 329


>ref|XP_848665.1| PREDICTED: similar to transforming, acidic coiled-coil containing
            protein 1 isoform 2 [Canis familiaris].
          Length = 800

 Score =  419 bits (1078), Expect = e-117
 Identities = 226/282 (80%), Positives = 235/282 (83%), Gaps = 29/282 (10%)
 Frame = +3

Query: 198  SKTSLHRSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQK 377
            +K+ L  SGCKVKKYE QSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST+ GQK
Sbjct: 453  AKSRLITSGCKVKKYETQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTSSGQK 512

Query: 378  PTGAEGKG-----------------------------MEKEMSLKMEKDGSTMPGTLEAP 470
              GAE KG                             +EKEM  KMEKDGS M G LE+ 
Sbjct: 513  SAGAEVKGEPEEDLEYFECSNVPVSTINHAFSSSEAGIEKEMCQKMEKDGSAMTGLLESS 572

Query: 471  MEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKRKYEETRQEVLE 650
            MEKAPVSVAC GESPLDGICLSESDKTAVLTLIREEIITKEIEANEWK+KYEETRQEVLE
Sbjct: 573  MEKAPVSVACEGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLE 632

Query: 651  MRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYEN 830
            MRKIVAEYEKTIAQMIEDEQR SMTSQKSFQQL+MEKEQALADLNSVERSLSDLFRRYEN
Sbjct: 633  MRKIVAEYEKTIAQMIEDEQRTSMTSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYEN 692

Query: 831  LKGVLEGFKKNEEALKKCAQDYLARV*QEEQRYQPLKINAEK 956
            LKGVLEGFKKNEEALKKCAQDYLARV QEEQRYQ LKI+AE+
Sbjct: 693  LKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEE 734


>ref|XP_535042.2| PREDICTED: similar to transforming, acidic coiled-coil containing
            protein 2 isoform a [Canis familiaris].
          Length = 2885

 Score =  198 bits (503), Expect = 7e-51
 Identities = 99/145 (68%), Positives = 120/145 (82%)
 Frame = +3

Query: 522  GICLSESDKTAVLTLIREEIITKEIEANEWKRKYEETRQEVLEMRKIVAEYEKTIAQMIE 701
            G+   + D  + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 2676 GLLFQQPDLDSALRIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 2735

Query: 702  DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK 881
            DEQR    S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE LKK
Sbjct: 2736 DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKK 2795

Query: 882  CAQDYLARV*QEEQRYQPLKINAEK 956
            CAQ+YL+RV +EEQRYQ LK++AE+
Sbjct: 2796 CAQEYLSRVKKEEQRYQALKVHAEE 2820


>ref|XP_536226.2| PREDICTED: similar to transforming acidic coiled coil 3 [Canis
            familiaris].
          Length = 945

 Score =  102 bits (253), Expect = 7e-22
 Identities = 64/175 (36%), Positives = 100/175 (57%), Gaps = 7/175 (4%)
 Frame = +3

Query: 453  GTLEAP-MEKAPVSVACGGE-----SPLDGICLSESDKTAVLTLIREEIITKEIEANEWK 614
            G  +AP ++  P     GG      S +D +  ++ D  A +  +REE        N   
Sbjct: 714  GAPDAPVLDPPPCVFGPGGPLLPLGSIVDVLQYTQKDMDAAVEAMREE--------NSLL 765

Query: 615  RKYEET-RQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSV 791
            R   +T   + LEM KI+  +E  + Q +E+ Q+    ++   Q++  EK+Q  ADL+S+
Sbjct: 766  RSRCDTLHAKNLEMGKIMDGFEGIVYQAMEEAQKQKELAKAEIQKILKEKDQLAADLSSM 825

Query: 792  ERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARV*QEEQRYQPLKINAEK 956
            E+S SDLF+R+E  K V+EG+  NEE+LKKC +DY+ R+ +E QRYQ LK +AE+
Sbjct: 826  EKSFSDLFKRFEKQKEVIEGYHTNEESLKKCVEDYIVRIEKEGQRYQALKAHAEE 880


>ref|XP_852295.1| PREDICTED: similar to Transforming acidic coiled-coil-containing
           protein 3 (ERIC-1) [Canis familiaris].
          Length = 450

 Score = 77.8 bits (190), Expect = 1e-14
 Identities = 36/72 (50%), Positives = 54/72 (75%)
 Frame = +3

Query: 741 QQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARV*QEE 920
           Q++  EK+Q  A L+S+E+S SDLF+R+E  K V++G+  NEE+LKKC +DY+ R+ +E 
Sbjct: 314 QKILKEKDQLAAYLSSMEKSFSDLFKRFEKQKEVIQGYHTNEESLKKCVEDYIVRIEKEG 373

Query: 921 QRYQPLKINAEK 956
           Q YQ LK +AE+
Sbjct: 374 QWYQALKAHAEE 385


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,194,634
Number of extensions: 977537
Number of successful extensions: 5027
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 5015
Number of HSP's successfully gapped: 7
Length of query: 319
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 216
Effective length of database: 15,440,896
Effective search space: 3335233536
Effective search space used: 3335233536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001896
         (958 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001116296.1| transforming acidic coiled-coil-containing p...   417   e-117
Alignment   gi|NP_001139688.1| transforming acidic coiled-coil-containing p...   413   e-115
Alignment   gi|NP_006274.2| transforming acidic coiled-coil-containing prot...   413   e-115
Alignment   gi|NP_996744.2| transforming acidic coiled-coil-containing prot...   197   2e-50
Alignment   gi|NP_996743.1| transforming acidic coiled-coil-containing prot...   197   2e-50
Alignment   gi|NP_996742.1| transforming acidic coiled-coil-containing prot...   197   2e-50
Alignment   gi|NP_008928.1| transforming acidic coiled-coil-containing prot...   197   2e-50
Alignment   gi|NP_006333.1| transforming acidic coiled-coil-containing prot...   122   5e-28

>ref|NP_001116296.1| transforming acidic coiled-coil-containing protein 1 isoform 2
           [Homo sapiens].
          Length = 395

 Score =  417 bits (1071), Expect = e-117
 Identities = 230/329 (69%), Positives = 247/329 (75%), Gaps = 29/329 (8%)
 Frame = +3

Query: 57  ATVAGGANGREETRGPPPTSPKGSKAREQVLVWTADMFPLQSQLGINSKTSLHRSGCKVK 236
           + V GGA G +E  GP                      P +      +K+   RSGCKVK
Sbjct: 20  SAVRGGAAGEDEAGGPEGD-------------------PEEEDSQAETKSLSFRSGCKVK 60

Query: 237 KYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQKPTGAEGKG----- 401
           K+E QSLALD CS+DEGAVISQISDISNRDGHATDEEKLAST+CGQK  GAE KG     
Sbjct: 61  KHETQSLALDACSRDEGAVISQISDISNRDGHATDEEKLASTSCGQKSAGAEVKGEPEED 120

Query: 402 ------------------------MEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGE 509
                                   +EKE   KME+DGST+ G LE+  EKAPVSV+CGGE
Sbjct: 121 LEYFECSNVPVSTINHAFSSSEAGIEKETCQKMEEDGSTVLGLLESSAEKAPVSVSCGGE 180

Query: 510 SPLDGICLSESDKTAVLTLIREEIITKEIEANEWKRKYEETRQEVLEMRKIVAEYEKTIA 689
           SPLDGICLSESDKTAVLTLIREEIITKEIEANEWK+KYEETRQEVLEMRKIVAEYEKTIA
Sbjct: 181 SPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIA 240

Query: 690 QMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEE 869
           QMIEDEQR SMTSQKSFQQL+MEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEE
Sbjct: 241 QMIEDEQRTSMTSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEE 300

Query: 870 ALKKCAQDYLARV*QEEQRYQPLKINAEK 956
           ALKKCAQDYLARV QEEQRYQ LKI+AE+
Sbjct: 301 ALKKCAQDYLARVKQEEQRYQALKIHAEE 329


>ref|NP_001139688.1| transforming acidic coiled-coil-containing protein 1 isoform 3 [Homo
            sapiens].
          Length = 610

 Score =  413 bits (1061), Expect = e-115
 Identities = 221/282 (78%), Positives = 235/282 (83%), Gaps = 29/282 (10%)
 Frame = +3

Query: 198  SKTSLHRSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQK 377
            +K+ L  SGCKVKK+E QSLALD CS+DEGAVISQISDISNRDGHATDEEKLAST+CGQK
Sbjct: 263  AKSRLITSGCKVKKHETQSLALDACSRDEGAVISQISDISNRDGHATDEEKLASTSCGQK 322

Query: 378  PTGAEGKG-----------------------------MEKEMSLKMEKDGSTMPGTLEAP 470
              GAE KG                             +EKE   KME+DGST+ G LE+ 
Sbjct: 323  SAGAEVKGEPEEDLEYFECSNVPVSTINHAFSSSEAGIEKETCQKMEEDGSTVLGLLESS 382

Query: 471  MEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKRKYEETRQEVLE 650
             EKAPVSV+CGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWK+KYEETRQEVLE
Sbjct: 383  AEKAPVSVSCGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLE 442

Query: 651  MRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYEN 830
            MRKIVAEYEKTIAQMIEDEQR SMTSQKSFQQL+MEKEQALADLNSVERSLSDLFRRYEN
Sbjct: 443  MRKIVAEYEKTIAQMIEDEQRTSMTSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYEN 502

Query: 831  LKGVLEGFKKNEEALKKCAQDYLARV*QEEQRYQPLKINAEK 956
            LKGVLEGFKKNEEALKKCAQDYLARV QEEQRYQ LKI+AE+
Sbjct: 503  LKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEE 544


>ref|NP_006274.2| transforming acidic coiled-coil-containing protein 1 isoform 1 [Homo
            sapiens].
          Length = 805

 Score =  413 bits (1061), Expect = e-115
 Identities = 221/282 (78%), Positives = 235/282 (83%), Gaps = 29/282 (10%)
 Frame = +3

Query: 198  SKTSLHRSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQK 377
            +K+ L  SGCKVKK+E QSLALD CS+DEGAVISQISDISNRDGHATDEEKLAST+CGQK
Sbjct: 458  AKSRLITSGCKVKKHETQSLALDACSRDEGAVISQISDISNRDGHATDEEKLASTSCGQK 517

Query: 378  PTGAEGKG-----------------------------MEKEMSLKMEKDGSTMPGTLEAP 470
              GAE KG                             +EKE   KME+DGST+ G LE+ 
Sbjct: 518  SAGAEVKGEPEEDLEYFECSNVPVSTINHAFSSSEAGIEKETCQKMEEDGSTVLGLLESS 577

Query: 471  MEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKRKYEETRQEVLE 650
             EKAPVSV+CGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWK+KYEETRQEVLE
Sbjct: 578  AEKAPVSVSCGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLE 637

Query: 651  MRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYEN 830
            MRKIVAEYEKTIAQMIEDEQR SMTSQKSFQQL+MEKEQALADLNSVERSLSDLFRRYEN
Sbjct: 638  MRKIVAEYEKTIAQMIEDEQRTSMTSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYEN 697

Query: 831  LKGVLEGFKKNEEALKKCAQDYLARV*QEEQRYQPLKINAEK 956
            LKGVLEGFKKNEEALKKCAQDYLARV QEEQRYQ LKI+AE+
Sbjct: 698  LKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEE 739


>ref|NP_996744.2| transforming acidic coiled-coil-containing protein 2 isoform a [Homo
            sapiens].
          Length = 2948

 Score =  197 bits (500), Expect = 2e-50
 Identities = 98/145 (67%), Positives = 120/145 (82%)
 Frame = +3

Query: 522  GICLSESDKTAVLTLIREEIITKEIEANEWKRKYEETRQEVLEMRKIVAEYEKTIAQMIE 701
            G+   + D  + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 2739 GLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 2798

Query: 702  DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK 881
            DEQR    S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE LK+
Sbjct: 2799 DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKR 2858

Query: 882  CAQDYLARV*QEEQRYQPLKINAEK 956
            CAQ+YL+RV +EEQRYQ LK++AE+
Sbjct: 2859 CAQEYLSRVKKEEQRYQALKVHAEE 2883


>ref|NP_996743.1| transforming acidic coiled-coil-containing protein 2 isoform b [Homo
            sapiens].
          Length = 1094

 Score =  197 bits (500), Expect = 2e-50
 Identities = 98/145 (67%), Positives = 120/145 (82%)
 Frame = +3

Query: 522  GICLSESDKTAVLTLIREEIITKEIEANEWKRKYEETRQEVLEMRKIVAEYEKTIAQMIE 701
            G+   + D  + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 885  GLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 944

Query: 702  DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK 881
            DEQR    S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE LK+
Sbjct: 945  DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKR 1004

Query: 882  CAQDYLARV*QEEQRYQPLKINAEK 956
            CAQ+YL+RV +EEQRYQ LK++AE+
Sbjct: 1005 CAQEYLSRVKKEEQRYQALKVHAEE 1029


>ref|NP_996742.1| transforming acidic coiled-coil-containing protein 2 isoform c [Homo
            sapiens].
          Length = 996

 Score =  197 bits (500), Expect = 2e-50
 Identities = 98/145 (67%), Positives = 120/145 (82%)
 Frame = +3

Query: 522  GICLSESDKTAVLTLIREEIITKEIEANEWKRKYEETRQEVLEMRKIVAEYEKTIAQMIE 701
            G+   + D  + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 787  GLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 846

Query: 702  DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK 881
            DEQR    S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE LK+
Sbjct: 847  DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKR 906

Query: 882  CAQDYLARV*QEEQRYQPLKINAEK 956
            CAQ+YL+RV +EEQRYQ LK++AE+
Sbjct: 907  CAQEYLSRVKKEEQRYQALKVHAEE 931


>ref|NP_008928.1| transforming acidic coiled-coil-containing protein 2 isoform d [Homo
            sapiens].
          Length = 1026

 Score =  197 bits (500), Expect = 2e-50
 Identities = 98/145 (67%), Positives = 120/145 (82%)
 Frame = +3

Query: 522  GICLSESDKTAVLTLIREEIITKEIEANEWKRKYEETRQEVLEMRKIVAEYEKTIAQMIE 701
            G+   + D  + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 817  GLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 876

Query: 702  DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK 881
            DEQR    S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE LK+
Sbjct: 877  DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKR 936

Query: 882  CAQDYLARV*QEEQRYQPLKINAEK 956
            CAQ+YL+RV +EEQRYQ LK++AE+
Sbjct: 937  CAQEYLSRVKKEEQRYQALKVHAEE 961


>ref|NP_006333.1| transforming acidic coiled-coil-containing protein 3 [Homo sapiens].
          Length = 838

 Score =  122 bits (306), Expect = 5e-28
 Identities = 70/174 (40%), Positives = 103/174 (59%), Gaps = 6/174 (3%)
 Frame = +3

Query: 453  GTLEAPMEKAPVSVACGGESPL------DGICLSESDKTAVLTLIREEIITKEIEANEWK 614
            G L+ P+   P  V   G  PL      D +  S+ D  AV+   +EE         E +
Sbjct: 607  GALDIPVPGPPPGVPAPGGPPLSTGPIVDLLQYSQKDLDAVVKATQEE-------NRELR 659

Query: 615  RKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVE 794
             + EE   + LE+ KI+  +E+ + Q +E+ Q+    S+   Q++  EK+Q   DLNS+E
Sbjct: 660  SRCEELHGKNLELGKIMDRFEEVVYQAMEEVQKQKELSKAEIQKVLKEKDQLTTDLNSME 719

Query: 795  RSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARV*QEEQRYQPLKINAEK 956
            +S SDLF+R+E  K V+EG++KNEE+LKKC +DYLAR+ QE QRYQ LK +AE+
Sbjct: 720  KSFSDLFKRFEKQKEVIEGYRKNEESLKKCVEDYLARITQEGQRYQALKAHAEE 773


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,350,220
Number of extensions: 953407
Number of successful extensions: 4439
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4416
Number of HSP's successfully gapped: 8
Length of query: 319
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 216
Effective length of database: 14,901,872
Effective search space: 3218804352
Effective search space used: 3218804352
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001896
         (958 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_955355.1| transforming acidic coiled-coil-containing prot...   405   e-113
Alignment   gi|NP_796063.3| transforming acidic coiled-coil-containing prot...   404   e-113
Alignment   gi|NP_996738.2| transforming acidic coiled-coil-containing prot...   193   1e-49
Alignment   gi|NP_067289.2| transforming acidic coiled-coil-containing prot...   193   1e-49
Alignment   gi|NP_001004468.1| transforming acidic coiled-coil-containing p...   193   1e-49
Alignment   gi|NP_001035525.1| transforming acidic coiled-coil-containing p...   105   5e-23

>ref|NP_955355.1| transforming acidic coiled-coil-containing protein 1 short isoform
           [Mus musculus].
          Length = 368

 Score =  405 bits (1041), Expect = e-113
 Identities = 220/303 (72%), Positives = 241/303 (79%), Gaps = 3/303 (0%)
 Frame = +3

Query: 57  ATVAGGANGREETRGPP--PTSPKGSKAREQVLVWTADMFPLQSQLGINSKTSLHRSGCK 230
           + V G   G +E  GP   P   + S+A                     +K+   RSGCK
Sbjct: 20  SAVRGSGAGEDEAGGPEGDPEEEEDSQAE--------------------TKSLSFRSGCK 59

Query: 231 VKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTT-CGQKPTGAEGKGME 407
           VKKYEAQ L LD CSQDEGAVIS+IS+I NRDGHATDEEKLAST+ C QK  GA  KG+E
Sbjct: 60  VKKYEAQPLDLDACSQDEGAVISKISEIPNRDGHATDEEKLASTSSCAQKSAGAGVKGIE 119

Query: 408 KEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIIT 587
           KE   KMEK+   + G LE+  EKAPVSVACGGESPLDGICLSE+DKTAVLTLIREEIIT
Sbjct: 120 KETCQKMEKEELAVHGLLESSSEKAPVSVACGGESPLDGICLSEADKTAVLTLIREEIIT 179

Query: 588 KEIEANEWKRKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQ 767
           KEIEANEWK+KYEETR+EVLEMRKIVAEYEKTIAQMIEDEQR SM+SQKSFQQL+MEKEQ
Sbjct: 180 KEIEANEWKKKYEETREEVLEMRKIVAEYEKTIAQMIEDEQRTSMSSQKSFQQLTMEKEQ 239

Query: 768 ALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARV*QEEQRYQPLKIN 947
           ALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARV QEEQRYQ LK++
Sbjct: 240 ALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKVH 299

Query: 948 AEK 956
           AE+
Sbjct: 300 AEE 302


>ref|NP_796063.3| transforming acidic coiled-coil-containing protein 1 long isoform
            [Mus musculus].
          Length = 776

 Score =  404 bits (1039), Expect = e-113
 Identities = 211/254 (83%), Positives = 228/254 (89%), Gaps = 1/254 (0%)
 Frame = +3

Query: 198  SKTSLHRSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTT-CGQ 374
            +K+ L  SGCKVKKYEAQ L LD CSQDEGAVIS+IS+I NRDGHATDEEKLAST+ C Q
Sbjct: 457  AKSRLITSGCKVKKYEAQPLDLDACSQDEGAVISKISEIPNRDGHATDEEKLASTSSCAQ 516

Query: 375  KPTGAEGKGMEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGESPLDGICLSESDKTA 554
            K  GA  KG+EKE   KMEK+   + G LE+  EKAPVSVACGGESPLDGICLSE+DKTA
Sbjct: 517  KSAGAGVKGIEKETCQKMEKEELAVHGLLESSSEKAPVSVACGGESPLDGICLSEADKTA 576

Query: 555  VLTLIREEIITKEIEANEWKRKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQK 734
            VLTLIREEIITKEIEANEWK+KYEETR+EVLEMRKIVAEYEKTIAQMIEDEQR SM+SQK
Sbjct: 577  VLTLIREEIITKEIEANEWKKKYEETREEVLEMRKIVAEYEKTIAQMIEDEQRTSMSSQK 636

Query: 735  SFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARV*Q 914
            SFQQL+MEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARV Q
Sbjct: 637  SFQQLTMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQ 696

Query: 915  EEQRYQPLKINAEK 956
            EEQRYQ LK++AE+
Sbjct: 697  EEQRYQALKVHAEE 710


>ref|NP_996738.2| transforming acidic coiled-coil-containing protein 2 isoform a [Mus
            musculus].
          Length = 1146

 Score =  193 bits (491), Expect = 1e-49
 Identities = 96/145 (66%), Positives = 119/145 (82%)
 Frame = +3

Query: 522  GICLSESDKTAVLTLIREEIITKEIEANEWKRKYEETRQEVLEMRKIVAEYEKTIAQMIE 701
            G+   + D  + L + R E+I KE E +EW+ KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 937  GLLFQQPDLDSALQVARAEVIAKEREVSEWRDKYEESRREVVEMRKIVAEYEKTIAQMIE 996

Query: 702  DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK 881
            DEQR    S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE LKK
Sbjct: 997  DEQREKSISHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKK 1056

Query: 882  CAQDYLARV*QEEQRYQPLKINAEK 956
            CAQ+YL+RV +EEQRYQ LK++AE+
Sbjct: 1057 CAQEYLSRVKKEEQRYQALKVHAEE 1081


>ref|NP_067289.2| transforming acidic coiled-coil-containing protein 2 isoform b [Mus
            musculus].
          Length = 1036

 Score =  193 bits (491), Expect = 1e-49
 Identities = 96/145 (66%), Positives = 119/145 (82%)
 Frame = +3

Query: 522  GICLSESDKTAVLTLIREEIITKEIEANEWKRKYEETRQEVLEMRKIVAEYEKTIAQMIE 701
            G+   + D  + L + R E+I KE E +EW+ KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 827  GLLFQQPDLDSALQVARAEVIAKEREVSEWRDKYEESRREVVEMRKIVAEYEKTIAQMIE 886

Query: 702  DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK 881
            DEQR    S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE LKK
Sbjct: 887  DEQREKSISHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKK 946

Query: 882  CAQDYLARV*QEEQRYQPLKINAEK 956
            CAQ+YL+RV +EEQRYQ LK++AE+
Sbjct: 947  CAQEYLSRVKKEEQRYQALKVHAEE 971


>ref|NP_001004468.1| transforming acidic coiled-coil-containing protein 2 isoform c [Mus
            musculus].
          Length = 2879

 Score =  193 bits (491), Expect = 1e-49
 Identities = 96/145 (66%), Positives = 119/145 (82%)
 Frame = +3

Query: 522  GICLSESDKTAVLTLIREEIITKEIEANEWKRKYEETRQEVLEMRKIVAEYEKTIAQMIE 701
            G+   + D  + L + R E+I KE E +EW+ KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 2670 GLLFQQPDLDSALQVARAEVIAKEREVSEWRDKYEESRREVVEMRKIVAEYEKTIAQMIE 2729

Query: 702  DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK 881
            DEQR    S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE LKK
Sbjct: 2730 DEQREKSISHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKK 2789

Query: 882  CAQDYLARV*QEEQRYQPLKINAEK 956
            CAQ+YL+RV +EEQRYQ LK++AE+
Sbjct: 2790 CAQEYLSRVKKEEQRYQALKVHAEE 2814


>ref|NP_001035525.1| transforming acidic coiled-coil-containing protein 3 [Mus
           musculus].
          Length = 630

 Score =  105 bits (262), Expect = 5e-23
 Identities = 63/176 (35%), Positives = 104/176 (59%), Gaps = 8/176 (4%)
 Frame = +3

Query: 453 GTLEAPMEKAPVSVA-----CGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKR 617
           G L+ P+   P+ V         E  +D +  S+ D  AV+ ++++E +       E K 
Sbjct: 397 GDLDVPVSAPPLCVLEPRGLLPAEPIVDVLKYSQKDLDAVVNVMQQENL-------ELKS 449

Query: 618 KYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRA---SMTSQKSFQQLSMEKEQALADLNS 788
           KYE+   + LEM K V E+EK   + +E+ ++       ++   Q++  E++Q  ADLNS
Sbjct: 450 KYEDLNTKYLEMGKSVDEFEKIAYKSLEEAEKQRELKEIAEDKIQKVLKERDQLNADLNS 509

Query: 789 VERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARV*QEEQRYQPLKINAEK 956
           +E+S SDLF+R+E  K V+EG++KNEE+LKK   + + ++ +E QRYQ LKI+AE+
Sbjct: 510 MEKSFSDLFKRFEKRKEVIEGYQKNEESLKKYVGECIVKIEKEGQRYQALKIHAEE 565


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,642,425
Number of extensions: 794793
Number of successful extensions: 3646
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3619
Number of HSP's successfully gapped: 6
Length of query: 319
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 218
Effective length of database: 12,583,923
Effective search space: 2743295214
Effective search space used: 2743295214
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001896
         (958 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003359527.1| PREDICTED: transforming acidic coiled-coil-c...   317   6e-87
Alignment   gi|XP_003128852.1| PREDICTED: transforming acidic coiled-coil-c...   102   4e-22

>ref|XP_003359527.1| PREDICTED: transforming acidic coiled-coil-containing protein
           1-like [Sus scrofa].
          Length = 254

 Score =  317 bits (812), Expect = 6e-87
 Identities = 166/185 (89%), Positives = 174/185 (94%)
 Frame = +3

Query: 402 MEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEI 581
           ++K M+ ++  D     GTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEI
Sbjct: 4   VKKLMTRRVTCDLFRPQGTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEI 63

Query: 582 ITKEIEANEWKRKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEK 761
           ITKEIEANEWK+KYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEK
Sbjct: 64  ITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEK 123

Query: 762 EQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARV*QEEQRYQPLK 941
           EQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARV QEEQRYQ LK
Sbjct: 124 EQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALK 183

Query: 942 INAEK 956
           I+AE+
Sbjct: 184 IHAEE 188


>ref|XP_003128852.1| PREDICTED: transforming acidic coiled-coil-containing protein
           3-like [Sus scrofa].
          Length = 740

 Score =  102 bits (253), Expect = 4e-22
 Identities = 50/120 (41%), Positives = 80/120 (66%)
 Frame = +3

Query: 597 EANEWKRKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALA 776
           E  E + +  E +++VLEM KI+  +E+T+ Q +E+ Q+    ++   Q+   E+E    
Sbjct: 556 ENAELRSRCTELQEKVLEMGKIMDRFEETVYQAMEEAQKQKELARVEVQKALQEQEHVSG 615

Query: 777 DLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARV*QEEQRYQPLKINAEK 956
           DL SVE+S S+LFRR+E  K V+EG++ NE +LKKC ++Y+ R+ +E QRYQ LK +AE+
Sbjct: 616 DLRSVEKSFSELFRRFEKQKEVIEGYRTNEASLKKCVEEYMERLEKEGQRYQALKAHAEE 675


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,864,195
Number of extensions: 606586
Number of successful extensions: 2935
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2927
Number of HSP's successfully gapped: 2
Length of query: 319
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 220
Effective length of database: 8,879,129
Effective search space: 1953408380
Effective search space used: 1953408380
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001896
         (958 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr15                                                         313   1e-82
Sscrofa_Chr14                                                          64   1e-07

>Sscrofa_Chr15 
||          Length = 157681621

 Score =  313 bits (158), Expect = 1e-82
 Identities = 161/162 (99%)
 Strand = Plus / Minus

                                                                            
Query: 699      gaagacgaacagagggcgagtatgacctcccagaagagcttccagcagctgagcatggag 758
                ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54871683 gaagatgaacagagggcgagtatgacctcccagaagagcttccagcagctgagcatggag 54871624

                                                                            
Query: 759      aaggagcaggcgctggccgacctcaactccgtggagaggtccctctccgacctcttcagg 818
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54871623 aaggagcaggcgctggccgacctcaactccgtggagaggtccctctccgacctcttcagg 54871564

                                                          
Query: 819      cgatatgagaacctgaaaggcgtcctggaggggttcaagaag 860
                ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54871563 cgatatgagaacctgaaaggcgtcctggaggggttcaagaag 54871522



 Score =  248 bits (125), Expect = 5e-63
 Identities = 125/125 (100%)
 Strand = Plus / Plus

                                                                            
Query: 276      caggatgaaggagcagtgatctcccagatttctgacatttccaacagggatggccacgca 335
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55069303 caggatgaaggagcagtgatctcccagatttctgacatttccaacagggatggccacgca 55069362

                                                                            
Query: 336      acagatgaggagaagctggcgtccacgacctgcggtcagaaacccaccggggccgagggg 395
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55069363 acagatgaggagaagctggcgtccacgacctgcggtcagaaacccaccggggccgagggg 55069422

                     
Query: 396      aaagg 400
                |||||
Sbjct: 55069423 aaagg 55069427



 Score =  232 bits (117), Expect = 3e-58
 Identities = 117/117 (100%)
 Strand = Plus / Plus

                                                                            
Query: 453      ggaaccttggaggccccgatggagaaggctcctgtgtccgtggcctgcggaggggagagc 512
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55079996 ggaaccttggaggccccgatggagaaggctcctgtgtccgtggcctgcggaggggagagc 55080055

                                                                         
Query: 513      cccctggacggcatctgcctcagtgaatcagacaagaccgccgtgctcaccctgatc 569
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55080056 cccctggacggcatctgcctcagtgaatcagacaagaccgccgtgctcaccctgatc 55080112



 Score =  220 bits (111), Expect = 1e-54
 Identities = 114/115 (99%)
 Strand = Plus / Plus

                                                                            
Query: 1        ctttctcggaaccgctccctgatcaggggcgtcagcttcccagcagaggtgatggagcca 60
                ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54986988 ctttctcggaaccactccctgatcaggggcgtcagcttcccagcagaggtgatggagcca 54987047

                                                                       
Query: 61       ctgtagcaggtggtgccaatgggagagaggagacccggggaccaccgcctacgag 115
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54987048 ctgtagcaggtggtgccaatgggagagaggagacccggggaccaccgcctacgag 54987102



 Score =  208 bits (105), Expect = 4e-51
 Identities = 105/105 (100%)
 Strand = Plus / Plus

                                                                            
Query: 114      agtcccaaaggttccaaggccagagaacaggtcctggtctggactgctgacatgttccct 173
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55004453 agtcccaaaggttccaaggccagagaacaggtcctggtctggactgctgacatgttccct 55004512

                                                             
Query: 174      cttcagagtcaactgggaataaattcaaagacaagtctacacagg 218
                |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55004513 cttcagagtcaactgggaataaattcaaagacaagtctacacagg 55004557



 Score =  155 bits (78), Expect = 5e-35
 Identities = 90/94 (95%)
 Strand = Plus / Minus

                                                                            
Query: 859      agaatgaagaagccttgaaaaaatgtgctcaggattacttagccagagtttaacaagagg 918
                |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 54871012 agaatgaagaagccttgaaaaaatgtgctcaggattacttagccagagttaaacaagagg 54870953

                                                  
Query: 919      agcagcggtaccagcccttgaaaatcaatgcgga 952
                |||||||||||||| || |||||||| |||||||
Sbjct: 54870952 agcagcggtaccaggccctgaaaatccatgcgga 54870919



 Score =  151 bits (76), Expect = 8e-34
 Identities = 79/80 (98%)
 Strand = Plus / Minus

                                                                            
Query: 577      agataatcactaaagagattgaagcaaatgaatggaagagaaaatatgaagaaacccgac 636
                ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 54875357 agataatcactaaagagattgaagcaaatgaatggaagaaaaaatatgaagaaacccgac 54875298

                                    
Query: 637      aagaagtcttggagatgagg 656
                ||||||||||||||||||||
Sbjct: 54875297 aagaagtcttggagatgagg 54875278



 Score =  129 bits (65), Expect = 3e-27
 Identities = 65/65 (100%)
 Strand = Plus / Plus

                                                                            
Query: 215      caggagtggctgtaaggtgaagaaatatgaagcccagtctcttgctttggatgggtgttc 274
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55066573 caggagtggctgtaaggtgaagaaatatgaagcccagtctcttgctttggatgggtgttc 55066632

                     
Query: 275      gcagg 279
                |||||
Sbjct: 55066633 gcagg 55066637



 Score =  111 bits (56), Expect = 7e-22
 Identities = 56/56 (100%)
 Strand = Plus / Plus

                                                                        
Query: 398      aggcatggagaaagagatgagcctgaagatggagaaggatggatccaccatgcccg 453
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55072342 aggcatggagaaagagatgagcctgaagatggagaaggatggatccaccatgcccg 55072397



 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 45/46 (97%)
 Strand = Plus / Minus

                                                              
Query: 654      aggaaaattgtggctgagtatgagaagaccattgcccaaatgatcg 699
                |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 54873231 aggaaaattgtggccgagtatgagaagaccattgcccaaatgatcg 54873186


>Sscrofa_Chr14 
||          Length = 153851969

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                             
Query: 654       aggaaaattgtggctgagtatgagaagaccattgcccaaatgat 697
                 |||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct: 143120522 aggaaaatagtggccgagtatgagaagaccatcgcccaaatgat 143120565



 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 92/112 (82%)
 Strand = Plus / Plus

                                                                             
Query: 739       tccagcagctgagcatggagaaggagcaggcgctggccgacctcaactccgtggagaggt 798
                 |||||||||||  | |||||||||| || || ||||||||||| ||||| ||||||| ||
Sbjct: 143126946 tccagcagctggtcctggagaaggaacaagccctggccgacctgaactcagtggagaagt 143127005

                                                                     
Query: 799       ccctctccgacctcttcaggcgatatgagaacctgaaaggcgtcctggaggg 850
                 | ||  |||| ||||||||| |||| |||||  |||| |  |||||||||||
Sbjct: 143127006 ctctggccgatctcttcaggagatacgagaagatgaaggaggtcctggaggg 143127057


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,766,333
Number of extensions: 208
Number of successful extensions: 208
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 12
Length of query: 958
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 937
Effective length of database: 2,808,413,156
Effective search space: 2631483127172
Effective search space used: 2631483127172
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)