Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001896
(958 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002698763.1| PREDICTED: transforming, acidic coiled-coil ... 421 e-118
Alignment gi|XP_583551.3| PREDICTED: transforming, acidic coiled-coil con... 421 e-118
Alignment gi|XP_002703282.1| PREDICTED: transforming, acidic coiled-coil ... 198 7e-51
Alignment gi|NP_001093775.1| transforming, acidic coiled-coil containing ... 104 1e-22
>ref|XP_002698763.1| PREDICTED: transforming, acidic coiled-coil containing protein 1 [Bos
taurus].
Length = 742
Score = 421 bits (1081), Expect = e-118
Identities = 225/282 (79%), Positives = 237/282 (84%), Gaps = 29/282 (10%)
Frame = +3
Query: 198 SKTSLHRSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQK 377
+K+ L SGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST+ QK
Sbjct: 395 AKSRLITSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTSSVQK 454
Query: 378 PTGAEGKG-----------------------------MEKEMSLKMEKDGSTMPGTLEAP 470
PTGAEGKG EK+ KMEKDGST+P LE+P
Sbjct: 455 PTGAEGKGEPEDDLEYFECSNVPVSAINHAFSSSEAGSEKDPCQKMEKDGSTVPALLESP 514
Query: 471 MEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKRKYEETRQEVLE 650
+EK PVSVACG ESPLDGICLSESDKTAVLTLIREEIITKEIEANEWK+KYEETRQEVLE
Sbjct: 515 VEKTPVSVACGVESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLE 574
Query: 651 MRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYEN 830
MRKIVAEYEKTIAQMIEDEQR SM+SQKSFQQL+MEKEQALADLNSVERSLSDLFRRYEN
Sbjct: 575 MRKIVAEYEKTIAQMIEDEQRTSMSSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYEN 634
Query: 831 LKGVLEGFKKNEEALKKCAQDYLARV*QEEQRYQPLKINAEK 956
LKGVLEGFKKNEEALKKCAQDYLARV QEEQRYQ LKI+AE+
Sbjct: 635 LKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEE 676
>ref|XP_583551.3| PREDICTED: transforming, acidic coiled-coil containing protein 1 [Bos
taurus].
Length = 666
Score = 421 bits (1081), Expect = e-118
Identities = 225/282 (79%), Positives = 237/282 (84%), Gaps = 29/282 (10%)
Frame = +3
Query: 198 SKTSLHRSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQK 377
+K+ L SGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST+ QK
Sbjct: 319 AKSRLITSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTSSVQK 378
Query: 378 PTGAEGKG-----------------------------MEKEMSLKMEKDGSTMPGTLEAP 470
PTGAEGKG EK+ KMEKDGST+P LE+P
Sbjct: 379 PTGAEGKGEPEDDLEYFECSNVPVSAINHAFSSSEAGSEKDPCQKMEKDGSTVPALLESP 438
Query: 471 MEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKRKYEETRQEVLE 650
+EK PVSVACG ESPLDGICLSESDKTAVLTLIREEIITKEIEANEWK+KYEETRQEVLE
Sbjct: 439 VEKTPVSVACGVESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLE 498
Query: 651 MRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYEN 830
MRKIVAEYEKTIAQMIEDEQR SM+SQKSFQQL+MEKEQALADLNSVERSLSDLFRRYEN
Sbjct: 499 MRKIVAEYEKTIAQMIEDEQRTSMSSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYEN 558
Query: 831 LKGVLEGFKKNEEALKKCAQDYLARV*QEEQRYQPLKINAEK 956
LKGVLEGFKKNEEALKKCAQDYLARV QEEQRYQ LKI+AE+
Sbjct: 559 LKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEE 600
>ref|XP_002703282.1| PREDICTED: transforming, acidic coiled-coil containing protein 2 [Bos
taurus].
Length = 2893
Score = 198 bits (503), Expect = 7e-51
Identities = 99/145 (68%), Positives = 120/145 (82%)
Frame = +3
Query: 522 GICLSESDKTAVLTLIREEIITKEIEANEWKRKYEETRQEVLEMRKIVAEYEKTIAQMIE 701
G+ + D + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 2684 GLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 2743
Query: 702 DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK 881
DEQR S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE LKK
Sbjct: 2744 DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKK 2803
Query: 882 CAQDYLARV*QEEQRYQPLKINAEK 956
CAQ+YL+RV +EEQRYQ LK++AE+
Sbjct: 2804 CAQEYLSRVKKEEQRYQALKVHAEE 2828
>ref|NP_001093775.1| transforming, acidic coiled-coil containing protein 3 [Bos taurus].
Length = 810
Score = 104 bits (260), Expect = 1e-22
Identities = 49/108 (45%), Positives = 77/108 (71%)
Frame = +3
Query: 633 RQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDL 812
++ +LEM KI+ +E T+ Q++E+ Q+ ++ Q++ EK Q ADL+S+E+S SDL
Sbjct: 638 QERLLEMGKIMDSFEGTVYQVMEESQKQKELTKAEMQKVLKEKAQLTADLHSMEKSFSDL 697
Query: 813 FRRYENLKGVLEGFKKNEEALKKCAQDYLARV*QEEQRYQPLKINAEK 956
F+R+E K V+EG++ NEE+LKKC +DY+ RV +E Q+YQ LK AE+
Sbjct: 698 FKRFEKQKEVIEGYRTNEESLKKCVEDYIERVEKEAQKYQALKAQAEE 745
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,440,954
Number of extensions: 940382
Number of successful extensions: 4523
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4508
Number of HSP's successfully gapped: 4
Length of query: 319
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 217
Effective length of database: 14,306,398
Effective search space: 3104488366
Effective search space used: 3104488366
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001896
(958 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_856593.1| PREDICTED: similar to transforming acidic coile... 437 e-123
Alignment gi|XP_532800.2| PREDICTED: similar to transforming, acidic coil... 435 e-122
Alignment gi|XP_856634.1| PREDICTED: similar to transforming, acidic coil... 422 e-118
Alignment gi|XP_848665.1| PREDICTED: similar to transforming, acidic coil... 419 e-117
Alignment gi|XP_535042.2| PREDICTED: similar to transforming, acidic coil... 198 7e-51
Alignment gi|XP_536226.2| PREDICTED: similar to transforming acidic coile... 102 7e-22
Alignment gi|XP_852295.1| PREDICTED: similar to Transforming acidic coile... 78 1e-14
>ref|XP_856593.1| PREDICTED: similar to transforming acidic coiled-coil containing
protein 1 short isoform isoform 3 [Canis familiaris].
Length = 366
Score = 437 bits (1125), Expect = e-123
Identities = 235/300 (78%), Positives = 245/300 (81%)
Frame = +3
Query: 57 ATVAGGANGREETRGPPPTSPKGSKAREQVLVWTADMFPLQSQLGINSKTSLHRSGCKVK 236
+ V GG G EE GP P +K+ RSGCKVK
Sbjct: 20 SAVRGGGAGEEEAGGPEGD-------------------PEDEDSQAETKSLSFRSGCKVK 60
Query: 237 KYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQKPTGAEGKGMEKEM 416
KYE QSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST+ GQK GAE KG+EKEM
Sbjct: 61 KYETQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTSSGQKSAGAEVKGIEKEM 120
Query: 417 SLKMEKDGSTMPGTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEI 596
KMEKDGS M G LE+ MEKAPVSVAC GESPLDGICLSESDKTAVLTLIREEIITKEI
Sbjct: 121 CQKMEKDGSAMTGLLESSMEKAPVSVACEGESPLDGICLSESDKTAVLTLIREEIITKEI 180
Query: 597 EANEWKRKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALA 776
EANEWK+KYEETRQEVLEMRKIVAEYEKTIAQMIEDEQR SMTSQKSFQQL+MEKEQALA
Sbjct: 181 EANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRTSMTSQKSFQQLTMEKEQALA 240
Query: 777 DLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARV*QEEQRYQPLKINAEK 956
DLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARV QEEQRYQ LKI+AE+
Sbjct: 241 DLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEE 300
>ref|XP_532800.2| PREDICTED: similar to transforming, acidic coiled-coil containing
protein 1 isoform 1 [Canis familiaris].
Length = 771
Score = 435 bits (1118), Expect = e-122
Identities = 226/253 (89%), Positives = 235/253 (92%)
Frame = +3
Query: 198 SKTSLHRSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQK 377
+K+ L SGCKVKKYE QSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST+ GQK
Sbjct: 453 AKSRLITSGCKVKKYETQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTSSGQK 512
Query: 378 PTGAEGKGMEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGESPLDGICLSESDKTAV 557
GAE KG+EKEM KMEKDGS M G LE+ MEKAPVSVAC GESPLDGICLSESDKTAV
Sbjct: 513 SAGAEVKGIEKEMCQKMEKDGSAMTGLLESSMEKAPVSVACEGESPLDGICLSESDKTAV 572
Query: 558 LTLIREEIITKEIEANEWKRKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKS 737
LTLIREEIITKEIEANEWK+KYEETRQEVLEMRKIVAEYEKTIAQMIEDEQR SMTSQKS
Sbjct: 573 LTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRTSMTSQKS 632
Query: 738 FQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARV*QE 917
FQQL+MEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARV QE
Sbjct: 633 FQQLTMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQE 692
Query: 918 EQRYQPLKINAEK 956
EQRYQ LKI+AE+
Sbjct: 693 EQRYQALKIHAEE 705
>ref|XP_856634.1| PREDICTED: similar to transforming, acidic coiled-coil containing
protein 1 isoform 4 [Canis familiaris].
Length = 395
Score = 422 bits (1085), Expect = e-118
Identities = 235/329 (71%), Positives = 245/329 (74%), Gaps = 29/329 (8%)
Frame = +3
Query: 57 ATVAGGANGREETRGPPPTSPKGSKAREQVLVWTADMFPLQSQLGINSKTSLHRSGCKVK 236
+ V GG G EE GP P +K+ RSGCKVK
Sbjct: 20 SAVRGGGAGEEEAGGPEGD-------------------PEDEDSQAETKSLSFRSGCKVK 60
Query: 237 KYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQKPTGAEGKG----- 401
KYE QSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST+ GQK GAE KG
Sbjct: 61 KYETQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTSSGQKSAGAEVKGEPEED 120
Query: 402 ------------------------MEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGE 509
+EKEM KMEKDGS M G LE+ MEKAPVSVAC GE
Sbjct: 121 LEYFECSNVPVSTINHAFSSSEAGIEKEMCQKMEKDGSAMTGLLESSMEKAPVSVACEGE 180
Query: 510 SPLDGICLSESDKTAVLTLIREEIITKEIEANEWKRKYEETRQEVLEMRKIVAEYEKTIA 689
SPLDGICLSESDKTAVLTLIREEIITKEIEANEWK+KYEETRQEVLEMRKIVAEYEKTIA
Sbjct: 181 SPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIA 240
Query: 690 QMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEE 869
QMIEDEQR SMTSQKSFQQL+MEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEE
Sbjct: 241 QMIEDEQRTSMTSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEE 300
Query: 870 ALKKCAQDYLARV*QEEQRYQPLKINAEK 956
ALKKCAQDYLARV QEEQRYQ LKI+AE+
Sbjct: 301 ALKKCAQDYLARVKQEEQRYQALKIHAEE 329
>ref|XP_848665.1| PREDICTED: similar to transforming, acidic coiled-coil containing
protein 1 isoform 2 [Canis familiaris].
Length = 800
Score = 419 bits (1078), Expect = e-117
Identities = 226/282 (80%), Positives = 235/282 (83%), Gaps = 29/282 (10%)
Frame = +3
Query: 198 SKTSLHRSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQK 377
+K+ L SGCKVKKYE QSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST+ GQK
Sbjct: 453 AKSRLITSGCKVKKYETQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTSSGQK 512
Query: 378 PTGAEGKG-----------------------------MEKEMSLKMEKDGSTMPGTLEAP 470
GAE KG +EKEM KMEKDGS M G LE+
Sbjct: 513 SAGAEVKGEPEEDLEYFECSNVPVSTINHAFSSSEAGIEKEMCQKMEKDGSAMTGLLESS 572
Query: 471 MEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKRKYEETRQEVLE 650
MEKAPVSVAC GESPLDGICLSESDKTAVLTLIREEIITKEIEANEWK+KYEETRQEVLE
Sbjct: 573 MEKAPVSVACEGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLE 632
Query: 651 MRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYEN 830
MRKIVAEYEKTIAQMIEDEQR SMTSQKSFQQL+MEKEQALADLNSVERSLSDLFRRYEN
Sbjct: 633 MRKIVAEYEKTIAQMIEDEQRTSMTSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYEN 692
Query: 831 LKGVLEGFKKNEEALKKCAQDYLARV*QEEQRYQPLKINAEK 956
LKGVLEGFKKNEEALKKCAQDYLARV QEEQRYQ LKI+AE+
Sbjct: 693 LKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEE 734
>ref|XP_535042.2| PREDICTED: similar to transforming, acidic coiled-coil containing
protein 2 isoform a [Canis familiaris].
Length = 2885
Score = 198 bits (503), Expect = 7e-51
Identities = 99/145 (68%), Positives = 120/145 (82%)
Frame = +3
Query: 522 GICLSESDKTAVLTLIREEIITKEIEANEWKRKYEETRQEVLEMRKIVAEYEKTIAQMIE 701
G+ + D + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 2676 GLLFQQPDLDSALRIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 2735
Query: 702 DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK 881
DEQR S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE LKK
Sbjct: 2736 DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKK 2795
Query: 882 CAQDYLARV*QEEQRYQPLKINAEK 956
CAQ+YL+RV +EEQRYQ LK++AE+
Sbjct: 2796 CAQEYLSRVKKEEQRYQALKVHAEE 2820
>ref|XP_536226.2| PREDICTED: similar to transforming acidic coiled coil 3 [Canis
familiaris].
Length = 945
Score = 102 bits (253), Expect = 7e-22
Identities = 64/175 (36%), Positives = 100/175 (57%), Gaps = 7/175 (4%)
Frame = +3
Query: 453 GTLEAP-MEKAPVSVACGGE-----SPLDGICLSESDKTAVLTLIREEIITKEIEANEWK 614
G +AP ++ P GG S +D + ++ D A + +REE N
Sbjct: 714 GAPDAPVLDPPPCVFGPGGPLLPLGSIVDVLQYTQKDMDAAVEAMREE--------NSLL 765
Query: 615 RKYEET-RQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSV 791
R +T + LEM KI+ +E + Q +E+ Q+ ++ Q++ EK+Q ADL+S+
Sbjct: 766 RSRCDTLHAKNLEMGKIMDGFEGIVYQAMEEAQKQKELAKAEIQKILKEKDQLAADLSSM 825
Query: 792 ERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARV*QEEQRYQPLKINAEK 956
E+S SDLF+R+E K V+EG+ NEE+LKKC +DY+ R+ +E QRYQ LK +AE+
Sbjct: 826 EKSFSDLFKRFEKQKEVIEGYHTNEESLKKCVEDYIVRIEKEGQRYQALKAHAEE 880
>ref|XP_852295.1| PREDICTED: similar to Transforming acidic coiled-coil-containing
protein 3 (ERIC-1) [Canis familiaris].
Length = 450
Score = 77.8 bits (190), Expect = 1e-14
Identities = 36/72 (50%), Positives = 54/72 (75%)
Frame = +3
Query: 741 QQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARV*QEE 920
Q++ EK+Q A L+S+E+S SDLF+R+E K V++G+ NEE+LKKC +DY+ R+ +E
Sbjct: 314 QKILKEKDQLAAYLSSMEKSFSDLFKRFEKQKEVIQGYHTNEESLKKCVEDYIVRIEKEG 373
Query: 921 QRYQPLKINAEK 956
Q YQ LK +AE+
Sbjct: 374 QWYQALKAHAEE 385
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,194,634
Number of extensions: 977537
Number of successful extensions: 5027
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 5015
Number of HSP's successfully gapped: 7
Length of query: 319
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 216
Effective length of database: 15,440,896
Effective search space: 3335233536
Effective search space used: 3335233536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001896
(958 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001116296.1| transforming acidic coiled-coil-containing p... 417 e-117
Alignment gi|NP_001139688.1| transforming acidic coiled-coil-containing p... 413 e-115
Alignment gi|NP_006274.2| transforming acidic coiled-coil-containing prot... 413 e-115
Alignment gi|NP_996744.2| transforming acidic coiled-coil-containing prot... 197 2e-50
Alignment gi|NP_996743.1| transforming acidic coiled-coil-containing prot... 197 2e-50
Alignment gi|NP_996742.1| transforming acidic coiled-coil-containing prot... 197 2e-50
Alignment gi|NP_008928.1| transforming acidic coiled-coil-containing prot... 197 2e-50
Alignment gi|NP_006333.1| transforming acidic coiled-coil-containing prot... 122 5e-28
>ref|NP_001116296.1| transforming acidic coiled-coil-containing protein 1 isoform 2
[Homo sapiens].
Length = 395
Score = 417 bits (1071), Expect = e-117
Identities = 230/329 (69%), Positives = 247/329 (75%), Gaps = 29/329 (8%)
Frame = +3
Query: 57 ATVAGGANGREETRGPPPTSPKGSKAREQVLVWTADMFPLQSQLGINSKTSLHRSGCKVK 236
+ V GGA G +E GP P + +K+ RSGCKVK
Sbjct: 20 SAVRGGAAGEDEAGGPEGD-------------------PEEEDSQAETKSLSFRSGCKVK 60
Query: 237 KYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQKPTGAEGKG----- 401
K+E QSLALD CS+DEGAVISQISDISNRDGHATDEEKLAST+CGQK GAE KG
Sbjct: 61 KHETQSLALDACSRDEGAVISQISDISNRDGHATDEEKLASTSCGQKSAGAEVKGEPEED 120
Query: 402 ------------------------MEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGE 509
+EKE KME+DGST+ G LE+ EKAPVSV+CGGE
Sbjct: 121 LEYFECSNVPVSTINHAFSSSEAGIEKETCQKMEEDGSTVLGLLESSAEKAPVSVSCGGE 180
Query: 510 SPLDGICLSESDKTAVLTLIREEIITKEIEANEWKRKYEETRQEVLEMRKIVAEYEKTIA 689
SPLDGICLSESDKTAVLTLIREEIITKEIEANEWK+KYEETRQEVLEMRKIVAEYEKTIA
Sbjct: 181 SPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIA 240
Query: 690 QMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEE 869
QMIEDEQR SMTSQKSFQQL+MEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEE
Sbjct: 241 QMIEDEQRTSMTSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEE 300
Query: 870 ALKKCAQDYLARV*QEEQRYQPLKINAEK 956
ALKKCAQDYLARV QEEQRYQ LKI+AE+
Sbjct: 301 ALKKCAQDYLARVKQEEQRYQALKIHAEE 329
>ref|NP_001139688.1| transforming acidic coiled-coil-containing protein 1 isoform 3 [Homo
sapiens].
Length = 610
Score = 413 bits (1061), Expect = e-115
Identities = 221/282 (78%), Positives = 235/282 (83%), Gaps = 29/282 (10%)
Frame = +3
Query: 198 SKTSLHRSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQK 377
+K+ L SGCKVKK+E QSLALD CS+DEGAVISQISDISNRDGHATDEEKLAST+CGQK
Sbjct: 263 AKSRLITSGCKVKKHETQSLALDACSRDEGAVISQISDISNRDGHATDEEKLASTSCGQK 322
Query: 378 PTGAEGKG-----------------------------MEKEMSLKMEKDGSTMPGTLEAP 470
GAE KG +EKE KME+DGST+ G LE+
Sbjct: 323 SAGAEVKGEPEEDLEYFECSNVPVSTINHAFSSSEAGIEKETCQKMEEDGSTVLGLLESS 382
Query: 471 MEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKRKYEETRQEVLE 650
EKAPVSV+CGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWK+KYEETRQEVLE
Sbjct: 383 AEKAPVSVSCGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLE 442
Query: 651 MRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYEN 830
MRKIVAEYEKTIAQMIEDEQR SMTSQKSFQQL+MEKEQALADLNSVERSLSDLFRRYEN
Sbjct: 443 MRKIVAEYEKTIAQMIEDEQRTSMTSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYEN 502
Query: 831 LKGVLEGFKKNEEALKKCAQDYLARV*QEEQRYQPLKINAEK 956
LKGVLEGFKKNEEALKKCAQDYLARV QEEQRYQ LKI+AE+
Sbjct: 503 LKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEE 544
>ref|NP_006274.2| transforming acidic coiled-coil-containing protein 1 isoform 1 [Homo
sapiens].
Length = 805
Score = 413 bits (1061), Expect = e-115
Identities = 221/282 (78%), Positives = 235/282 (83%), Gaps = 29/282 (10%)
Frame = +3
Query: 198 SKTSLHRSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQK 377
+K+ L SGCKVKK+E QSLALD CS+DEGAVISQISDISNRDGHATDEEKLAST+CGQK
Sbjct: 458 AKSRLITSGCKVKKHETQSLALDACSRDEGAVISQISDISNRDGHATDEEKLASTSCGQK 517
Query: 378 PTGAEGKG-----------------------------MEKEMSLKMEKDGSTMPGTLEAP 470
GAE KG +EKE KME+DGST+ G LE+
Sbjct: 518 SAGAEVKGEPEEDLEYFECSNVPVSTINHAFSSSEAGIEKETCQKMEEDGSTVLGLLESS 577
Query: 471 MEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKRKYEETRQEVLE 650
EKAPVSV+CGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWK+KYEETRQEVLE
Sbjct: 578 AEKAPVSVSCGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLE 637
Query: 651 MRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYEN 830
MRKIVAEYEKTIAQMIEDEQR SMTSQKSFQQL+MEKEQALADLNSVERSLSDLFRRYEN
Sbjct: 638 MRKIVAEYEKTIAQMIEDEQRTSMTSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYEN 697
Query: 831 LKGVLEGFKKNEEALKKCAQDYLARV*QEEQRYQPLKINAEK 956
LKGVLEGFKKNEEALKKCAQDYLARV QEEQRYQ LKI+AE+
Sbjct: 698 LKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEE 739
>ref|NP_996744.2| transforming acidic coiled-coil-containing protein 2 isoform a [Homo
sapiens].
Length = 2948
Score = 197 bits (500), Expect = 2e-50
Identities = 98/145 (67%), Positives = 120/145 (82%)
Frame = +3
Query: 522 GICLSESDKTAVLTLIREEIITKEIEANEWKRKYEETRQEVLEMRKIVAEYEKTIAQMIE 701
G+ + D + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 2739 GLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 2798
Query: 702 DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK 881
DEQR S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE LK+
Sbjct: 2799 DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKR 2858
Query: 882 CAQDYLARV*QEEQRYQPLKINAEK 956
CAQ+YL+RV +EEQRYQ LK++AE+
Sbjct: 2859 CAQEYLSRVKKEEQRYQALKVHAEE 2883
>ref|NP_996743.1| transforming acidic coiled-coil-containing protein 2 isoform b [Homo
sapiens].
Length = 1094
Score = 197 bits (500), Expect = 2e-50
Identities = 98/145 (67%), Positives = 120/145 (82%)
Frame = +3
Query: 522 GICLSESDKTAVLTLIREEIITKEIEANEWKRKYEETRQEVLEMRKIVAEYEKTIAQMIE 701
G+ + D + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 885 GLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 944
Query: 702 DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK 881
DEQR S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE LK+
Sbjct: 945 DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKR 1004
Query: 882 CAQDYLARV*QEEQRYQPLKINAEK 956
CAQ+YL+RV +EEQRYQ LK++AE+
Sbjct: 1005 CAQEYLSRVKKEEQRYQALKVHAEE 1029
>ref|NP_996742.1| transforming acidic coiled-coil-containing protein 2 isoform c [Homo
sapiens].
Length = 996
Score = 197 bits (500), Expect = 2e-50
Identities = 98/145 (67%), Positives = 120/145 (82%)
Frame = +3
Query: 522 GICLSESDKTAVLTLIREEIITKEIEANEWKRKYEETRQEVLEMRKIVAEYEKTIAQMIE 701
G+ + D + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 787 GLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 846
Query: 702 DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK 881
DEQR S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE LK+
Sbjct: 847 DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKR 906
Query: 882 CAQDYLARV*QEEQRYQPLKINAEK 956
CAQ+YL+RV +EEQRYQ LK++AE+
Sbjct: 907 CAQEYLSRVKKEEQRYQALKVHAEE 931
>ref|NP_008928.1| transforming acidic coiled-coil-containing protein 2 isoform d [Homo
sapiens].
Length = 1026
Score = 197 bits (500), Expect = 2e-50
Identities = 98/145 (67%), Positives = 120/145 (82%)
Frame = +3
Query: 522 GICLSESDKTAVLTLIREEIITKEIEANEWKRKYEETRQEVLEMRKIVAEYEKTIAQMIE 701
G+ + D + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 817 GLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 876
Query: 702 DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK 881
DEQR S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE LK+
Sbjct: 877 DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKR 936
Query: 882 CAQDYLARV*QEEQRYQPLKINAEK 956
CAQ+YL+RV +EEQRYQ LK++AE+
Sbjct: 937 CAQEYLSRVKKEEQRYQALKVHAEE 961
>ref|NP_006333.1| transforming acidic coiled-coil-containing protein 3 [Homo sapiens].
Length = 838
Score = 122 bits (306), Expect = 5e-28
Identities = 70/174 (40%), Positives = 103/174 (59%), Gaps = 6/174 (3%)
Frame = +3
Query: 453 GTLEAPMEKAPVSVACGGESPL------DGICLSESDKTAVLTLIREEIITKEIEANEWK 614
G L+ P+ P V G PL D + S+ D AV+ +EE E +
Sbjct: 607 GALDIPVPGPPPGVPAPGGPPLSTGPIVDLLQYSQKDLDAVVKATQEE-------NRELR 659
Query: 615 RKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVE 794
+ EE + LE+ KI+ +E+ + Q +E+ Q+ S+ Q++ EK+Q DLNS+E
Sbjct: 660 SRCEELHGKNLELGKIMDRFEEVVYQAMEEVQKQKELSKAEIQKVLKEKDQLTTDLNSME 719
Query: 795 RSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARV*QEEQRYQPLKINAEK 956
+S SDLF+R+E K V+EG++KNEE+LKKC +DYLAR+ QE QRYQ LK +AE+
Sbjct: 720 KSFSDLFKRFEKQKEVIEGYRKNEESLKKCVEDYLARITQEGQRYQALKAHAEE 773
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,350,220
Number of extensions: 953407
Number of successful extensions: 4439
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4416
Number of HSP's successfully gapped: 8
Length of query: 319
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 216
Effective length of database: 14,901,872
Effective search space: 3218804352
Effective search space used: 3218804352
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001896
(958 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_955355.1| transforming acidic coiled-coil-containing prot... 405 e-113
Alignment gi|NP_796063.3| transforming acidic coiled-coil-containing prot... 404 e-113
Alignment gi|NP_996738.2| transforming acidic coiled-coil-containing prot... 193 1e-49
Alignment gi|NP_067289.2| transforming acidic coiled-coil-containing prot... 193 1e-49
Alignment gi|NP_001004468.1| transforming acidic coiled-coil-containing p... 193 1e-49
Alignment gi|NP_001035525.1| transforming acidic coiled-coil-containing p... 105 5e-23
>ref|NP_955355.1| transforming acidic coiled-coil-containing protein 1 short isoform
[Mus musculus].
Length = 368
Score = 405 bits (1041), Expect = e-113
Identities = 220/303 (72%), Positives = 241/303 (79%), Gaps = 3/303 (0%)
Frame = +3
Query: 57 ATVAGGANGREETRGPP--PTSPKGSKAREQVLVWTADMFPLQSQLGINSKTSLHRSGCK 230
+ V G G +E GP P + S+A +K+ RSGCK
Sbjct: 20 SAVRGSGAGEDEAGGPEGDPEEEEDSQAE--------------------TKSLSFRSGCK 59
Query: 231 VKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTT-CGQKPTGAEGKGME 407
VKKYEAQ L LD CSQDEGAVIS+IS+I NRDGHATDEEKLAST+ C QK GA KG+E
Sbjct: 60 VKKYEAQPLDLDACSQDEGAVISKISEIPNRDGHATDEEKLASTSSCAQKSAGAGVKGIE 119
Query: 408 KEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIIT 587
KE KMEK+ + G LE+ EKAPVSVACGGESPLDGICLSE+DKTAVLTLIREEIIT
Sbjct: 120 KETCQKMEKEELAVHGLLESSSEKAPVSVACGGESPLDGICLSEADKTAVLTLIREEIIT 179
Query: 588 KEIEANEWKRKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQ 767
KEIEANEWK+KYEETR+EVLEMRKIVAEYEKTIAQMIEDEQR SM+SQKSFQQL+MEKEQ
Sbjct: 180 KEIEANEWKKKYEETREEVLEMRKIVAEYEKTIAQMIEDEQRTSMSSQKSFQQLTMEKEQ 239
Query: 768 ALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARV*QEEQRYQPLKIN 947
ALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARV QEEQRYQ LK++
Sbjct: 240 ALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKVH 299
Query: 948 AEK 956
AE+
Sbjct: 300 AEE 302
>ref|NP_796063.3| transforming acidic coiled-coil-containing protein 1 long isoform
[Mus musculus].
Length = 776
Score = 404 bits (1039), Expect = e-113
Identities = 211/254 (83%), Positives = 228/254 (89%), Gaps = 1/254 (0%)
Frame = +3
Query: 198 SKTSLHRSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTT-CGQ 374
+K+ L SGCKVKKYEAQ L LD CSQDEGAVIS+IS+I NRDGHATDEEKLAST+ C Q
Sbjct: 457 AKSRLITSGCKVKKYEAQPLDLDACSQDEGAVISKISEIPNRDGHATDEEKLASTSSCAQ 516
Query: 375 KPTGAEGKGMEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGESPLDGICLSESDKTA 554
K GA KG+EKE KMEK+ + G LE+ EKAPVSVACGGESPLDGICLSE+DKTA
Sbjct: 517 KSAGAGVKGIEKETCQKMEKEELAVHGLLESSSEKAPVSVACGGESPLDGICLSEADKTA 576
Query: 555 VLTLIREEIITKEIEANEWKRKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQK 734
VLTLIREEIITKEIEANEWK+KYEETR+EVLEMRKIVAEYEKTIAQMIEDEQR SM+SQK
Sbjct: 577 VLTLIREEIITKEIEANEWKKKYEETREEVLEMRKIVAEYEKTIAQMIEDEQRTSMSSQK 636
Query: 735 SFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARV*Q 914
SFQQL+MEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARV Q
Sbjct: 637 SFQQLTMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQ 696
Query: 915 EEQRYQPLKINAEK 956
EEQRYQ LK++AE+
Sbjct: 697 EEQRYQALKVHAEE 710
>ref|NP_996738.2| transforming acidic coiled-coil-containing protein 2 isoform a [Mus
musculus].
Length = 1146
Score = 193 bits (491), Expect = 1e-49
Identities = 96/145 (66%), Positives = 119/145 (82%)
Frame = +3
Query: 522 GICLSESDKTAVLTLIREEIITKEIEANEWKRKYEETRQEVLEMRKIVAEYEKTIAQMIE 701
G+ + D + L + R E+I KE E +EW+ KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 937 GLLFQQPDLDSALQVARAEVIAKEREVSEWRDKYEESRREVVEMRKIVAEYEKTIAQMIE 996
Query: 702 DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK 881
DEQR S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE LKK
Sbjct: 997 DEQREKSISHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKK 1056
Query: 882 CAQDYLARV*QEEQRYQPLKINAEK 956
CAQ+YL+RV +EEQRYQ LK++AE+
Sbjct: 1057 CAQEYLSRVKKEEQRYQALKVHAEE 1081
>ref|NP_067289.2| transforming acidic coiled-coil-containing protein 2 isoform b [Mus
musculus].
Length = 1036
Score = 193 bits (491), Expect = 1e-49
Identities = 96/145 (66%), Positives = 119/145 (82%)
Frame = +3
Query: 522 GICLSESDKTAVLTLIREEIITKEIEANEWKRKYEETRQEVLEMRKIVAEYEKTIAQMIE 701
G+ + D + L + R E+I KE E +EW+ KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 827 GLLFQQPDLDSALQVARAEVIAKEREVSEWRDKYEESRREVVEMRKIVAEYEKTIAQMIE 886
Query: 702 DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK 881
DEQR S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE LKK
Sbjct: 887 DEQREKSISHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKK 946
Query: 882 CAQDYLARV*QEEQRYQPLKINAEK 956
CAQ+YL+RV +EEQRYQ LK++AE+
Sbjct: 947 CAQEYLSRVKKEEQRYQALKVHAEE 971
>ref|NP_001004468.1| transforming acidic coiled-coil-containing protein 2 isoform c [Mus
musculus].
Length = 2879
Score = 193 bits (491), Expect = 1e-49
Identities = 96/145 (66%), Positives = 119/145 (82%)
Frame = +3
Query: 522 GICLSESDKTAVLTLIREEIITKEIEANEWKRKYEETRQEVLEMRKIVAEYEKTIAQMIE 701
G+ + D + L + R E+I KE E +EW+ KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 2670 GLLFQQPDLDSALQVARAEVIAKEREVSEWRDKYEESRREVVEMRKIVAEYEKTIAQMIE 2729
Query: 702 DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK 881
DEQR S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE LKK
Sbjct: 2730 DEQREKSISHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKK 2789
Query: 882 CAQDYLARV*QEEQRYQPLKINAEK 956
CAQ+YL+RV +EEQRYQ LK++AE+
Sbjct: 2790 CAQEYLSRVKKEEQRYQALKVHAEE 2814
>ref|NP_001035525.1| transforming acidic coiled-coil-containing protein 3 [Mus
musculus].
Length = 630
Score = 105 bits (262), Expect = 5e-23
Identities = 63/176 (35%), Positives = 104/176 (59%), Gaps = 8/176 (4%)
Frame = +3
Query: 453 GTLEAPMEKAPVSVA-----CGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKR 617
G L+ P+ P+ V E +D + S+ D AV+ ++++E + E K
Sbjct: 397 GDLDVPVSAPPLCVLEPRGLLPAEPIVDVLKYSQKDLDAVVNVMQQENL-------ELKS 449
Query: 618 KYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRA---SMTSQKSFQQLSMEKEQALADLNS 788
KYE+ + LEM K V E+EK + +E+ ++ ++ Q++ E++Q ADLNS
Sbjct: 450 KYEDLNTKYLEMGKSVDEFEKIAYKSLEEAEKQRELKEIAEDKIQKVLKERDQLNADLNS 509
Query: 789 VERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARV*QEEQRYQPLKINAEK 956
+E+S SDLF+R+E K V+EG++KNEE+LKK + + ++ +E QRYQ LKI+AE+
Sbjct: 510 MEKSFSDLFKRFEKRKEVIEGYQKNEESLKKYVGECIVKIEKEGQRYQALKIHAEE 565
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,642,425
Number of extensions: 794793
Number of successful extensions: 3646
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3619
Number of HSP's successfully gapped: 6
Length of query: 319
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 218
Effective length of database: 12,583,923
Effective search space: 2743295214
Effective search space used: 2743295214
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001896
(958 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003359527.1| PREDICTED: transforming acidic coiled-coil-c... 317 6e-87
Alignment gi|XP_003128852.1| PREDICTED: transforming acidic coiled-coil-c... 102 4e-22
>ref|XP_003359527.1| PREDICTED: transforming acidic coiled-coil-containing protein
1-like [Sus scrofa].
Length = 254
Score = 317 bits (812), Expect = 6e-87
Identities = 166/185 (89%), Positives = 174/185 (94%)
Frame = +3
Query: 402 MEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEI 581
++K M+ ++ D GTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEI
Sbjct: 4 VKKLMTRRVTCDLFRPQGTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEI 63
Query: 582 ITKEIEANEWKRKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEK 761
ITKEIEANEWK+KYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEK
Sbjct: 64 ITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEK 123
Query: 762 EQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARV*QEEQRYQPLK 941
EQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARV QEEQRYQ LK
Sbjct: 124 EQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALK 183
Query: 942 INAEK 956
I+AE+
Sbjct: 184 IHAEE 188
>ref|XP_003128852.1| PREDICTED: transforming acidic coiled-coil-containing protein
3-like [Sus scrofa].
Length = 740
Score = 102 bits (253), Expect = 4e-22
Identities = 50/120 (41%), Positives = 80/120 (66%)
Frame = +3
Query: 597 EANEWKRKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALA 776
E E + + E +++VLEM KI+ +E+T+ Q +E+ Q+ ++ Q+ E+E
Sbjct: 556 ENAELRSRCTELQEKVLEMGKIMDRFEETVYQAMEEAQKQKELARVEVQKALQEQEHVSG 615
Query: 777 DLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARV*QEEQRYQPLKINAEK 956
DL SVE+S S+LFRR+E K V+EG++ NE +LKKC ++Y+ R+ +E QRYQ LK +AE+
Sbjct: 616 DLRSVEKSFSELFRRFEKQKEVIEGYRTNEASLKKCVEEYMERLEKEGQRYQALKAHAEE 675
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,864,195
Number of extensions: 606586
Number of successful extensions: 2935
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2927
Number of HSP's successfully gapped: 2
Length of query: 319
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 220
Effective length of database: 8,879,129
Effective search space: 1953408380
Effective search space used: 1953408380
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001896
(958 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 313 1e-82
Sscrofa_Chr14 64 1e-07
>Sscrofa_Chr15
|| Length = 157681621
Score = 313 bits (158), Expect = 1e-82
Identities = 161/162 (99%)
Strand = Plus / Minus
Query: 699 gaagacgaacagagggcgagtatgacctcccagaagagcttccagcagctgagcatggag 758
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54871683 gaagatgaacagagggcgagtatgacctcccagaagagcttccagcagctgagcatggag 54871624
Query: 759 aaggagcaggcgctggccgacctcaactccgtggagaggtccctctccgacctcttcagg 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54871623 aaggagcaggcgctggccgacctcaactccgtggagaggtccctctccgacctcttcagg 54871564
Query: 819 cgatatgagaacctgaaaggcgtcctggaggggttcaagaag 860
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54871563 cgatatgagaacctgaaaggcgtcctggaggggttcaagaag 54871522
Score = 248 bits (125), Expect = 5e-63
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 276 caggatgaaggagcagtgatctcccagatttctgacatttccaacagggatggccacgca 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55069303 caggatgaaggagcagtgatctcccagatttctgacatttccaacagggatggccacgca 55069362
Query: 336 acagatgaggagaagctggcgtccacgacctgcggtcagaaacccaccggggccgagggg 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55069363 acagatgaggagaagctggcgtccacgacctgcggtcagaaacccaccggggccgagggg 55069422
Query: 396 aaagg 400
|||||
Sbjct: 55069423 aaagg 55069427
Score = 232 bits (117), Expect = 3e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 453 ggaaccttggaggccccgatggagaaggctcctgtgtccgtggcctgcggaggggagagc 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55079996 ggaaccttggaggccccgatggagaaggctcctgtgtccgtggcctgcggaggggagagc 55080055
Query: 513 cccctggacggcatctgcctcagtgaatcagacaagaccgccgtgctcaccctgatc 569
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55080056 cccctggacggcatctgcctcagtgaatcagacaagaccgccgtgctcaccctgatc 55080112
Score = 220 bits (111), Expect = 1e-54
Identities = 114/115 (99%)
Strand = Plus / Plus
Query: 1 ctttctcggaaccgctccctgatcaggggcgtcagcttcccagcagaggtgatggagcca 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54986988 ctttctcggaaccactccctgatcaggggcgtcagcttcccagcagaggtgatggagcca 54987047
Query: 61 ctgtagcaggtggtgccaatgggagagaggagacccggggaccaccgcctacgag 115
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54987048 ctgtagcaggtggtgccaatgggagagaggagacccggggaccaccgcctacgag 54987102
Score = 208 bits (105), Expect = 4e-51
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 114 agtcccaaaggttccaaggccagagaacaggtcctggtctggactgctgacatgttccct 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55004453 agtcccaaaggttccaaggccagagaacaggtcctggtctggactgctgacatgttccct 55004512
Query: 174 cttcagagtcaactgggaataaattcaaagacaagtctacacagg 218
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55004513 cttcagagtcaactgggaataaattcaaagacaagtctacacagg 55004557
Score = 155 bits (78), Expect = 5e-35
Identities = 90/94 (95%)
Strand = Plus / Minus
Query: 859 agaatgaagaagccttgaaaaaatgtgctcaggattacttagccagagtttaacaagagg 918
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 54871012 agaatgaagaagccttgaaaaaatgtgctcaggattacttagccagagttaaacaagagg 54870953
Query: 919 agcagcggtaccagcccttgaaaatcaatgcgga 952
|||||||||||||| || |||||||| |||||||
Sbjct: 54870952 agcagcggtaccaggccctgaaaatccatgcgga 54870919
Score = 151 bits (76), Expect = 8e-34
Identities = 79/80 (98%)
Strand = Plus / Minus
Query: 577 agataatcactaaagagattgaagcaaatgaatggaagagaaaatatgaagaaacccgac 636
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 54875357 agataatcactaaagagattgaagcaaatgaatggaagaaaaaatatgaagaaacccgac 54875298
Query: 637 aagaagtcttggagatgagg 656
||||||||||||||||||||
Sbjct: 54875297 aagaagtcttggagatgagg 54875278
Score = 129 bits (65), Expect = 3e-27
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 215 caggagtggctgtaaggtgaagaaatatgaagcccagtctcttgctttggatgggtgttc 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55066573 caggagtggctgtaaggtgaagaaatatgaagcccagtctcttgctttggatgggtgttc 55066632
Query: 275 gcagg 279
|||||
Sbjct: 55066633 gcagg 55066637
Score = 111 bits (56), Expect = 7e-22
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 398 aggcatggagaaagagatgagcctgaagatggagaaggatggatccaccatgcccg 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55072342 aggcatggagaaagagatgagcctgaagatggagaaggatggatccaccatgcccg 55072397
Score = 83.8 bits (42), Expect = 2e-13
Identities = 45/46 (97%)
Strand = Plus / Minus
Query: 654 aggaaaattgtggctgagtatgagaagaccattgcccaaatgatcg 699
|||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 54873231 aggaaaattgtggccgagtatgagaagaccattgcccaaatgatcg 54873186
>Sscrofa_Chr14
|| Length = 153851969
Score = 63.9 bits (32), Expect = 1e-07
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 654 aggaaaattgtggctgagtatgagaagaccattgcccaaatgat 697
|||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct: 143120522 aggaaaatagtggccgagtatgagaagaccatcgcccaaatgat 143120565
Score = 63.9 bits (32), Expect = 1e-07
Identities = 92/112 (82%)
Strand = Plus / Plus
Query: 739 tccagcagctgagcatggagaaggagcaggcgctggccgacctcaactccgtggagaggt 798
||||||||||| | |||||||||| || || ||||||||||| ||||| ||||||| ||
Sbjct: 143126946 tccagcagctggtcctggagaaggaacaagccctggccgacctgaactcagtggagaagt 143127005
Query: 799 ccctctccgacctcttcaggcgatatgagaacctgaaaggcgtcctggaggg 850
| || |||| ||||||||| |||| ||||| |||| | |||||||||||
Sbjct: 143127006 ctctggccgatctcttcaggagatacgagaagatgaaggaggtcctggaggg 143127057
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,766,333
Number of extensions: 208
Number of successful extensions: 208
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 12
Length of query: 958
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 937
Effective length of database: 2,808,413,156
Effective search space: 2631483127172
Effective search space used: 2631483127172
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)