Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001901
(1022 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002698763.1| PREDICTED: transforming, acidic coiled-coil ... 385 e-107
Alignment gi|XP_583551.3| PREDICTED: transforming, acidic coiled-coil con... 385 e-107
Alignment gi|XP_002703282.1| PREDICTED: transforming, acidic coiled-coil ... 169 5e-42
Alignment gi|NP_001093775.1| transforming, acidic coiled-coil containing ... 79 5e-15
>ref|XP_002698763.1| PREDICTED: transforming, acidic coiled-coil containing protein 1 [Bos
taurus].
Length = 742
Score = 385 bits (988), Expect = e-107
Identities = 210/282 (74%), Positives = 222/282 (78%), Gaps = 29/282 (10%)
Frame = +3
Query: 264 ETKSLSFRSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQ 443
+ KS SGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST+ Q
Sbjct: 394 KAKSRLITSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTSSVQ 453
Query: 444 KPTGAEGKG-----------------------------MEKEMSLKMEKDGSTMPGTLEA 536
KPTGAEGKG EK+ KMEKDGST+P LE+
Sbjct: 454 KPTGAEGKGEPEDDLEYFECSNVPVSAINHAFSSSEAGSEKDPCQKMEKDGSTVPALLES 513
Query: 537 PMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL 716
P+EK PVSVACG ESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL
Sbjct: 514 PVEKTPVSVACGVESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL 573
Query: 717 EMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYE 896
EMRKIVAEYEKTIAQMIEDEQR SM+SQKSFQQL+MEKEQALADLNSVERSLSDLFRRYE
Sbjct: 574 EMRKIVAEYEKTIAQMIEDEQRTSMSSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYE 633
Query: 897 NLKGVLEGFKKNEEP*KNVLRIT*PELNKKSSGTQALKIHAE 1022
NLKGVLEGFKKNEE K + + ++ QALKIHAE
Sbjct: 634 NLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAE 675
Score = 64.3 bits (155), Expect = 2e-10
Identities = 32/55 (58%), Positives = 33/55 (60%)
Frame = +3
Query: 126 MAFSPWQILSPVQWAKWTWSAVRXXXXXXXXXXXXXXXXXXXXXQAETKSLSFRS 290
MAFSPWQILSPVQWA+WTWSAVR QAETKSLSF S
Sbjct: 1 MAFSPWQILSPVQWARWTWSAVRGGGAGEDEAGGPEGYPEDEDSQAETKSLSFSS 55
>ref|XP_583551.3| PREDICTED: transforming, acidic coiled-coil containing protein 1 [Bos
taurus].
Length = 666
Score = 385 bits (988), Expect = e-107
Identities = 210/282 (74%), Positives = 222/282 (78%), Gaps = 29/282 (10%)
Frame = +3
Query: 264 ETKSLSFRSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQ 443
+ KS SGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST+ Q
Sbjct: 318 KAKSRLITSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTSSVQ 377
Query: 444 KPTGAEGKG-----------------------------MEKEMSLKMEKDGSTMPGTLEA 536
KPTGAEGKG EK+ KMEKDGST+P LE+
Sbjct: 378 KPTGAEGKGEPEDDLEYFECSNVPVSAINHAFSSSEAGSEKDPCQKMEKDGSTVPALLES 437
Query: 537 PMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL 716
P+EK PVSVACG ESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL
Sbjct: 438 PVEKTPVSVACGVESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL 497
Query: 717 EMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYE 896
EMRKIVAEYEKTIAQMIEDEQR SM+SQKSFQQL+MEKEQALADLNSVERSLSDLFRRYE
Sbjct: 498 EMRKIVAEYEKTIAQMIEDEQRTSMSSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYE 557
Query: 897 NLKGVLEGFKKNEEP*KNVLRIT*PELNKKSSGTQALKIHAE 1022
NLKGVLEGFKKNEE K + + ++ QALKIHAE
Sbjct: 558 NLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAE 599
>ref|XP_002703282.1| PREDICTED: transforming, acidic coiled-coil containing protein 2 [Bos
taurus].
Length = 2893
Score = 169 bits (427), Expect = 5e-42
Identities = 88/144 (61%), Positives = 107/144 (74%)
Frame = +3
Query: 591 GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 770
G+ + D + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 2684 GLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 2743
Query: 771 DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEP*KN 950
DEQR S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE K
Sbjct: 2744 DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKK 2803
Query: 951 VLRIT*PELNKKSSGTQALKIHAE 1022
+ + K+ QALK+HAE
Sbjct: 2804 CAQEYLSRVKKEEQRYQALKVHAE 2827
>ref|NP_001093775.1| transforming, acidic coiled-coil containing protein 3 [Bos taurus].
Length = 810
Score = 79.3 bits (194), Expect = 5e-15
Identities = 41/107 (38%), Positives = 67/107 (62%)
Frame = +3
Query: 702 RQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDL 881
++ +LEM KI+ +E T+ Q++E+ Q+ ++ Q++ EK Q ADL+S+E+S SDL
Sbjct: 638 QERLLEMGKIMDSFEGTVYQVMEESQKQKELTKAEMQKVLKEKAQLTADLHSMEKSFSDL 697
Query: 882 FRRYENLKGVLEGFKKNEEP*KNVLRIT*PELNKKSSGTQALKIHAE 1022
F+R+E K V+EG++ NEE K + + K++ QALK AE
Sbjct: 698 FKRFEKQKEVIEGYRTNEESLKKCVEDYIERVEKEAQKYQALKAQAE 744
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,686,175
Number of extensions: 819801
Number of successful extensions: 3880
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3871
Number of HSP's successfully gapped: 5
Length of query: 340
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 237
Effective length of database: 14,273,310
Effective search space: 3382774470
Effective search space used: 3382774470
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001901
(1022 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_856593.1| PREDICTED: similar to transforming acidic coile... 459 e-129
Alignment gi|XP_856634.1| PREDICTED: similar to transforming, acidic coil... 443 e-124
Alignment gi|XP_532800.2| PREDICTED: similar to transforming, acidic coil... 399 e-111
Alignment gi|XP_848665.1| PREDICTED: similar to transforming, acidic coil... 384 e-106
Alignment gi|XP_535042.2| PREDICTED: similar to transforming, acidic coil... 169 5e-42
Alignment gi|XP_536226.2| PREDICTED: similar to transforming acidic coile... 79 9e-15
Alignment gi|XP_852295.1| PREDICTED: similar to Transforming acidic coile... 57 3e-08
>ref|XP_856593.1| PREDICTED: similar to transforming acidic coiled-coil containing
protein 1 short isoform isoform 3 [Canis familiaris].
Length = 366
Score = 459 bits (1180), Expect = e-129
Identities = 242/299 (80%), Positives = 250/299 (83%)
Frame = +3
Query: 126 MAFSPWQILSPVQWAKWTWSAVRXXXXXXXXXXXXXXXXXXXXXQAETKSLSFRSGCKVK 305
MAFSPWQILSPVQWAKWTWSAVR QAETKSLSFRSGCKVK
Sbjct: 1 MAFSPWQILSPVQWAKWTWSAVRGGGAGEEEAGGPEGDPEDEDSQAETKSLSFRSGCKVK 60
Query: 306 KYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQKPTGAEGKGMEKEM 485
KYE QSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST+ GQK GAE KG+EKEM
Sbjct: 61 KYETQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTSSGQKSAGAEVKGIEKEM 120
Query: 486 SLKMEKDGSTMPGTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEI 665
KMEKDGS M G LE+ MEKAPVSVAC GESPLDGICLSESDKTAVLTLIREEIITKEI
Sbjct: 121 CQKMEKDGSAMTGLLESSMEKAPVSVACEGESPLDGICLSESDKTAVLTLIREEIITKEI 180
Query: 666 EANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALA 845
EANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQR SMTSQKSFQQL+MEKEQALA
Sbjct: 181 EANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRTSMTSQKSFQQLTMEKEQALA 240
Query: 846 DLNSVERSLSDLFRRYENLKGVLEGFKKNEEP*KNVLRIT*PELNKKSSGTQALKIHAE 1022
DLNSVERSLSDLFRRYENLKGVLEGFKKNEE K + + ++ QALKIHAE
Sbjct: 241 DLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAE 299
>ref|XP_856634.1| PREDICTED: similar to transforming, acidic coiled-coil containing
protein 1 isoform 4 [Canis familiaris].
Length = 395
Score = 443 bits (1140), Expect = e-124
Identities = 242/328 (73%), Positives = 250/328 (76%), Gaps = 29/328 (8%)
Frame = +3
Query: 126 MAFSPWQILSPVQWAKWTWSAVRXXXXXXXXXXXXXXXXXXXXXQAETKSLSFRSGCKVK 305
MAFSPWQILSPVQWAKWTWSAVR QAETKSLSFRSGCKVK
Sbjct: 1 MAFSPWQILSPVQWAKWTWSAVRGGGAGEEEAGGPEGDPEDEDSQAETKSLSFRSGCKVK 60
Query: 306 KYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQKPTGAEGKG----- 470
KYE QSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST+ GQK GAE KG
Sbjct: 61 KYETQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTSSGQKSAGAEVKGEPEED 120
Query: 471 ------------------------MEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGE 578
+EKEM KMEKDGS M G LE+ MEKAPVSVAC GE
Sbjct: 121 LEYFECSNVPVSTINHAFSSSEAGIEKEMCQKMEKDGSAMTGLLESSMEKAPVSVACEGE 180
Query: 579 SPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIA 758
SPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIA
Sbjct: 181 SPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIA 240
Query: 759 QMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEE 938
QMIEDEQR SMTSQKSFQQL+MEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEE
Sbjct: 241 QMIEDEQRTSMTSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEE 300
Query: 939 P*KNVLRIT*PELNKKSSGTQALKIHAE 1022
K + + ++ QALKIHAE
Sbjct: 301 ALKKCAQDYLARVKQEEQRYQALKIHAE 328
>ref|XP_532800.2| PREDICTED: similar to transforming, acidic coiled-coil containing
protein 1 isoform 1 [Canis familiaris].
Length = 771
Score = 399 bits (1025), Expect = e-111
Identities = 211/253 (83%), Positives = 220/253 (86%)
Frame = +3
Query: 264 ETKSLSFRSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQ 443
+ KS SGCKVKKYE QSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST+ GQ
Sbjct: 452 KAKSRLITSGCKVKKYETQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTSSGQ 511
Query: 444 KPTGAEGKGMEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGESPLDGICLSESDKTA 623
K GAE KG+EKEM KMEKDGS M G LE+ MEKAPVSVAC GESPLDGICLSESDKTA
Sbjct: 512 KSAGAEVKGIEKEMCQKMEKDGSAMTGLLESSMEKAPVSVACEGESPLDGICLSESDKTA 571
Query: 624 VLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQK 803
VLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQR SMTSQK
Sbjct: 572 VLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRTSMTSQK 631
Query: 804 SFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEP*KNVLRIT*PELNK 983
SFQQL+MEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEE K + + +
Sbjct: 632 SFQQLTMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQ 691
Query: 984 KSSGTQALKIHAE 1022
+ QALKIHAE
Sbjct: 692 EEQRYQALKIHAE 704
Score = 65.5 bits (158), Expect = 8e-11
Identities = 33/55 (60%), Positives = 33/55 (60%)
Frame = +3
Query: 126 MAFSPWQILSPVQWAKWTWSAVRXXXXXXXXXXXXXXXXXXXXXQAETKSLSFRS 290
MAFSPWQILSPVQWAKWTWSAVR QAETKSLSF S
Sbjct: 1 MAFSPWQILSPVQWAKWTWSAVRGGGAGEEEAGGPEGDPEDEDSQAETKSLSFSS 55
>ref|XP_848665.1| PREDICTED: similar to transforming, acidic coiled-coil containing
protein 1 isoform 2 [Canis familiaris].
Length = 800
Score = 384 bits (985), Expect = e-106
Identities = 211/282 (74%), Positives = 220/282 (78%), Gaps = 29/282 (10%)
Frame = +3
Query: 264 ETKSLSFRSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQ 443
+ KS SGCKVKKYE QSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST+ GQ
Sbjct: 452 KAKSRLITSGCKVKKYETQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTSSGQ 511
Query: 444 KPTGAEGKG-----------------------------MEKEMSLKMEKDGSTMPGTLEA 536
K GAE KG +EKEM KMEKDGS M G LE+
Sbjct: 512 KSAGAEVKGEPEEDLEYFECSNVPVSTINHAFSSSEAGIEKEMCQKMEKDGSAMTGLLES 571
Query: 537 PMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL 716
MEKAPVSVAC GESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL
Sbjct: 572 SMEKAPVSVACEGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL 631
Query: 717 EMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYE 896
EMRKIVAEYEKTIAQMIEDEQR SMTSQKSFQQL+MEKEQALADLNSVERSLSDLFRRYE
Sbjct: 632 EMRKIVAEYEKTIAQMIEDEQRTSMTSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYE 691
Query: 897 NLKGVLEGFKKNEEP*KNVLRIT*PELNKKSSGTQALKIHAE 1022
NLKGVLEGFKKNEE K + + ++ QALKIHAE
Sbjct: 692 NLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAE 733
Score = 65.5 bits (158), Expect = 8e-11
Identities = 33/55 (60%), Positives = 33/55 (60%)
Frame = +3
Query: 126 MAFSPWQILSPVQWAKWTWSAVRXXXXXXXXXXXXXXXXXXXXXQAETKSLSFRS 290
MAFSPWQILSPVQWAKWTWSAVR QAETKSLSF S
Sbjct: 1 MAFSPWQILSPVQWAKWTWSAVRGGGAGEEEAGGPEGDPEDEDSQAETKSLSFSS 55
>ref|XP_535042.2| PREDICTED: similar to transforming, acidic coiled-coil containing
protein 2 isoform a [Canis familiaris].
Length = 2885
Score = 169 bits (427), Expect = 5e-42
Identities = 88/144 (61%), Positives = 107/144 (74%)
Frame = +3
Query: 591 GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 770
G+ + D + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 2676 GLLFQQPDLDSALRIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 2735
Query: 771 DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEP*KN 950
DEQR S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE K
Sbjct: 2736 DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKK 2795
Query: 951 VLRIT*PELNKKSSGTQALKIHAE 1022
+ + K+ QALK+HAE
Sbjct: 2796 CAQEYLSRVKKEEQRYQALKVHAE 2819
>ref|XP_536226.2| PREDICTED: similar to transforming acidic coiled coil 3 [Canis
familiaris].
Length = 945
Score = 78.6 bits (192), Expect = 9e-15
Identities = 54/173 (31%), Positives = 89/173 (51%), Gaps = 6/173 (3%)
Frame = +3
Query: 522 GTLEAP-MEKAPVSVACGGE-----SPLDGICLSESDKTAVLTLIREEIITKEIEANEWK 683
G +AP ++ P GG S +D + ++ D A + +REE + +
Sbjct: 714 GAPDAPVLDPPPCVFGPGGPLLPLGSIVDVLQYTQKDMDAAVEAMREE-------NSLLR 766
Query: 684 KKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVE 863
+ + + LEM KI+ +E + Q +E+ Q+ ++ Q++ EK+Q ADL+S+E
Sbjct: 767 SRCDTLHAKNLEMGKIMDGFEGIVYQAMEEAQKQKELAKAEIQKILKEKDQLAADLSSME 826
Query: 864 RSLSDLFRRYENLKGVLEGFKKNEEP*KNVLRIT*PELNKKSSGTQALKIHAE 1022
+S SDLF+R+E K V+EG+ NEE K + + K+ QALK HAE
Sbjct: 827 KSFSDLFKRFEKQKEVIEGYHTNEESLKKCVEDYIVRIEKEGQRYQALKAHAE 879
>ref|XP_852295.1| PREDICTED: similar to Transforming acidic coiled-coil-containing
protein 3 (ERIC-1) [Canis familiaris].
Length = 450
Score = 57.0 bits (136), Expect = 3e-08
Identities = 30/71 (42%), Positives = 44/71 (61%)
Frame = +3
Query: 810 QQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEP*KNVLRIT*PELNKKS 989
Q++ EK+Q A L+S+E+S SDLF+R+E K V++G+ NEE K + + K+
Sbjct: 314 QKILKEKDQLAAYLSSMEKSFSDLFKRFEKQKEVIQGYHTNEESLKKCVEDYIVRIEKEG 373
Query: 990 SGTQALKIHAE 1022
QALK HAE
Sbjct: 374 QWYQALKAHAE 384
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,335,822
Number of extensions: 851871
Number of successful extensions: 4424
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 4400
Number of HSP's successfully gapped: 9
Length of query: 340
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 237
Effective length of database: 15,440,896
Effective search space: 3659492352
Effective search space used: 3659492352
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001901
(1022 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001116296.1| transforming acidic coiled-coil-containing p... 437 e-122
Alignment gi|NP_001139688.1| transforming acidic coiled-coil-containing p... 377 e-105
Alignment gi|NP_006274.2| transforming acidic coiled-coil-containing prot... 377 e-105
Alignment gi|NP_996744.2| transforming acidic coiled-coil-containing prot... 169 5e-42
Alignment gi|NP_996743.1| transforming acidic coiled-coil-containing prot... 169 5e-42
Alignment gi|NP_996742.1| transforming acidic coiled-coil-containing prot... 169 5e-42
Alignment gi|NP_008928.1| transforming acidic coiled-coil-containing prot... 169 5e-42
Alignment gi|NP_006333.1| transforming acidic coiled-coil-containing prot... 94 2e-19
>ref|NP_001116296.1| transforming acidic coiled-coil-containing protein 1 isoform 2 [Homo
sapiens].
Length = 395
Score = 437 bits (1123), Expect = e-122
Identities = 237/328 (72%), Positives = 250/328 (76%), Gaps = 29/328 (8%)
Frame = +3
Query: 126 MAFSPWQILSPVQWAKWTWSAVRXXXXXXXXXXXXXXXXXXXXXQAETKSLSFRSGCKVK 305
MAFSPWQILSPVQWAKWTWSAVR QAETKSLSFRSGCKVK
Sbjct: 1 MAFSPWQILSPVQWAKWTWSAVRGGAAGEDEAGGPEGDPEEEDSQAETKSLSFRSGCKVK 60
Query: 306 KYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQKPTGAEGKG----- 470
K+E QSLALD CS+DEGAVISQISDISNRDGHATDEEKLAST+CGQK GAE KG
Sbjct: 61 KHETQSLALDACSRDEGAVISQISDISNRDGHATDEEKLASTSCGQKSAGAEVKGEPEED 120
Query: 471 ------------------------MEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGE 578
+EKE KME+DGST+ G LE+ EKAPVSV+CGGE
Sbjct: 121 LEYFECSNVPVSTINHAFSSSEAGIEKETCQKMEEDGSTVLGLLESSAEKAPVSVSCGGE 180
Query: 579 SPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIA 758
SPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIA
Sbjct: 181 SPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIA 240
Query: 759 QMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEE 938
QMIEDEQR SMTSQKSFQQL+MEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEE
Sbjct: 241 QMIEDEQRTSMTSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEE 300
Query: 939 P*KNVLRIT*PELNKKSSGTQALKIHAE 1022
K + + ++ QALKIHAE
Sbjct: 301 ALKKCAQDYLARVKQEEQRYQALKIHAE 328
>ref|NP_001139688.1| transforming acidic coiled-coil-containing protein 1 isoform 3 [Homo
sapiens].
Length = 610
Score = 377 bits (968), Expect = e-105
Identities = 206/282 (73%), Positives = 220/282 (78%), Gaps = 29/282 (10%)
Frame = +3
Query: 264 ETKSLSFRSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQ 443
+ KS SGCKVKK+E QSLALD CS+DEGAVISQISDISNRDGHATDEEKLAST+CGQ
Sbjct: 262 KAKSRLITSGCKVKKHETQSLALDACSRDEGAVISQISDISNRDGHATDEEKLASTSCGQ 321
Query: 444 KPTGAEGKG-----------------------------MEKEMSLKMEKDGSTMPGTLEA 536
K GAE KG +EKE KME+DGST+ G LE+
Sbjct: 322 KSAGAEVKGEPEEDLEYFECSNVPVSTINHAFSSSEAGIEKETCQKMEEDGSTVLGLLES 381
Query: 537 PMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL 716
EKAPVSV+CGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL
Sbjct: 382 SAEKAPVSVSCGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL 441
Query: 717 EMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYE 896
EMRKIVAEYEKTIAQMIEDEQR SMTSQKSFQQL+MEKEQALADLNSVERSLSDLFRRYE
Sbjct: 442 EMRKIVAEYEKTIAQMIEDEQRTSMTSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYE 501
Query: 897 NLKGVLEGFKKNEEP*KNVLRIT*PELNKKSSGTQALKIHAE 1022
NLKGVLEGFKKNEE K + + ++ QALKIHAE
Sbjct: 502 NLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAE 543
>ref|NP_006274.2| transforming acidic coiled-coil-containing protein 1 isoform 1 [Homo
sapiens].
Length = 805
Score = 377 bits (968), Expect = e-105
Identities = 206/282 (73%), Positives = 220/282 (78%), Gaps = 29/282 (10%)
Frame = +3
Query: 264 ETKSLSFRSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQ 443
+ KS SGCKVKK+E QSLALD CS+DEGAVISQISDISNRDGHATDEEKLAST+CGQ
Sbjct: 457 KAKSRLITSGCKVKKHETQSLALDACSRDEGAVISQISDISNRDGHATDEEKLASTSCGQ 516
Query: 444 KPTGAEGKG-----------------------------MEKEMSLKMEKDGSTMPGTLEA 536
K GAE KG +EKE KME+DGST+ G LE+
Sbjct: 517 KSAGAEVKGEPEEDLEYFECSNVPVSTINHAFSSSEAGIEKETCQKMEEDGSTVLGLLES 576
Query: 537 PMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL 716
EKAPVSV+CGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL
Sbjct: 577 SAEKAPVSVSCGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL 636
Query: 717 EMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYE 896
EMRKIVAEYEKTIAQMIEDEQR SMTSQKSFQQL+MEKEQALADLNSVERSLSDLFRRYE
Sbjct: 637 EMRKIVAEYEKTIAQMIEDEQRTSMTSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYE 696
Query: 897 NLKGVLEGFKKNEEP*KNVLRIT*PELNKKSSGTQALKIHAE 1022
NLKGVLEGFKKNEE K + + ++ QALKIHAE
Sbjct: 697 NLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAE 738
Score = 65.5 bits (158), Expect = 8e-11
Identities = 33/55 (60%), Positives = 33/55 (60%)
Frame = +3
Query: 126 MAFSPWQILSPVQWAKWTWSAVRXXXXXXXXXXXXXXXXXXXXXQAETKSLSFRS 290
MAFSPWQILSPVQWAKWTWSAVR QAETKSLSF S
Sbjct: 1 MAFSPWQILSPVQWAKWTWSAVRGGAAGEDEAGGPEGDPEEEDSQAETKSLSFSS 55
>ref|NP_996744.2| transforming acidic coiled-coil-containing protein 2 isoform a [Homo
sapiens].
Length = 2948
Score = 169 bits (427), Expect = 5e-42
Identities = 88/144 (61%), Positives = 107/144 (74%)
Frame = +3
Query: 591 GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 770
G+ + D + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 2739 GLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 2798
Query: 771 DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEP*KN 950
DEQR S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE K
Sbjct: 2799 DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKR 2858
Query: 951 VLRIT*PELNKKSSGTQALKIHAE 1022
+ + K+ QALK+HAE
Sbjct: 2859 CAQEYLSRVKKEEQRYQALKVHAE 2882
>ref|NP_996743.1| transforming acidic coiled-coil-containing protein 2 isoform b [Homo
sapiens].
Length = 1094
Score = 169 bits (427), Expect = 5e-42
Identities = 88/144 (61%), Positives = 107/144 (74%)
Frame = +3
Query: 591 GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 770
G+ + D + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 885 GLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 944
Query: 771 DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEP*KN 950
DEQR S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE K
Sbjct: 945 DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKR 1004
Query: 951 VLRIT*PELNKKSSGTQALKIHAE 1022
+ + K+ QALK+HAE
Sbjct: 1005 CAQEYLSRVKKEEQRYQALKVHAE 1028
>ref|NP_996742.1| transforming acidic coiled-coil-containing protein 2 isoform c [Homo
sapiens].
Length = 996
Score = 169 bits (427), Expect = 5e-42
Identities = 88/144 (61%), Positives = 107/144 (74%)
Frame = +3
Query: 591 GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 770
G+ + D + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 787 GLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 846
Query: 771 DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEP*KN 950
DEQR S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE K
Sbjct: 847 DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKR 906
Query: 951 VLRIT*PELNKKSSGTQALKIHAE 1022
+ + K+ QALK+HAE
Sbjct: 907 CAQEYLSRVKKEEQRYQALKVHAE 930
>ref|NP_008928.1| transforming acidic coiled-coil-containing protein 2 isoform d [Homo
sapiens].
Length = 1026
Score = 169 bits (427), Expect = 5e-42
Identities = 88/144 (61%), Positives = 107/144 (74%)
Frame = +3
Query: 591 GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 770
G+ + D + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 817 GLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 876
Query: 771 DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEP*KN 950
DEQR S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE K
Sbjct: 877 DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKR 936
Query: 951 VLRIT*PELNKKSSGTQALKIHAE 1022
+ + K+ QALK+HAE
Sbjct: 937 CAQEYLSRVKKEEQRYQALKVHAE 960
>ref|NP_006333.1| transforming acidic coiled-coil-containing protein 3 [Homo sapiens].
Length = 838
Score = 94.0 bits (232), Expect = 2e-19
Identities = 59/173 (34%), Positives = 91/173 (52%), Gaps = 6/173 (3%)
Frame = +3
Query: 522 GTLEAPMEKAPVSVACGGESPL------DGICLSESDKTAVLTLIREEIITKEIEANEWK 683
G L+ P+ P V G PL D + S+ D AV+ +EE E +
Sbjct: 607 GALDIPVPGPPPGVPAPGGPPLSTGPIVDLLQYSQKDLDAVVKATQEE-------NRELR 659
Query: 684 KKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVE 863
+ EE + LE+ KI+ +E+ + Q +E+ Q+ S+ Q++ EK+Q DLNS+E
Sbjct: 660 SRCEELHGKNLELGKIMDRFEEVVYQAMEEVQKQKELSKAEIQKVLKEKDQLTTDLNSME 719
Query: 864 RSLSDLFRRYENLKGVLEGFKKNEEP*KNVLRIT*PELNKKSSGTQALKIHAE 1022
+S SDLF+R+E K V+EG++KNEE K + + ++ QALK HAE
Sbjct: 720 KSFSDLFKRFEKQKEVIEGYRKNEESLKKCVEDYLARITQEGQRYQALKAHAE 772
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,513,532
Number of extensions: 827121
Number of successful extensions: 3983
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3947
Number of HSP's successfully gapped: 9
Length of query: 340
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 237
Effective length of database: 14,901,872
Effective search space: 3531743664
Effective search space used: 3531743664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001901
(1022 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_955355.1| transforming acidic coiled-coil-containing prot... 424 e-119
Alignment gi|NP_796063.3| transforming acidic coiled-coil-containing prot... 369 e-102
Alignment gi|NP_996738.2| transforming acidic coiled-coil-containing prot... 164 1e-40
Alignment gi|NP_067289.2| transforming acidic coiled-coil-containing prot... 164 1e-40
Alignment gi|NP_001004468.1| transforming acidic coiled-coil-containing p... 164 1e-40
Alignment gi|NP_001035525.1| transforming acidic coiled-coil-containing p... 94 2e-19
>ref|NP_955355.1| transforming acidic coiled-coil-containing protein 1 short isoform
[Mus musculus].
Length = 368
Score = 424 bits (1089), Expect = e-119
Identities = 227/301 (75%), Positives = 243/301 (80%), Gaps = 2/301 (0%)
Frame = +3
Query: 126 MAFSPWQILSPVQWAKWTWSAVRXXXXXXXXXXXXXXXXXXXXX-QAETKSLSFRSGCKV 302
MAFSPWQILSPVQWAKWTWSAVR QAETKSLSFRSGCKV
Sbjct: 1 MAFSPWQILSPVQWAKWTWSAVRGSGAGEDEAGGPEGDPEEEEDSQAETKSLSFRSGCKV 60
Query: 303 KKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTT-CGQKPTGAEGKGMEK 479
KKYEAQ L LD CSQDEGAVIS+IS+I NRDGHATDEEKLAST+ C QK GA KG+EK
Sbjct: 61 KKYEAQPLDLDACSQDEGAVISKISEIPNRDGHATDEEKLASTSSCAQKSAGAGVKGIEK 120
Query: 480 EMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIITK 659
E KMEK+ + G LE+ EKAPVSVACGGESPLDGICLSE+DKTAVLTLIREEIITK
Sbjct: 121 ETCQKMEKEELAVHGLLESSSEKAPVSVACGGESPLDGICLSEADKTAVLTLIREEIITK 180
Query: 660 EIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQA 839
EIEANEWKKKYEETR+EVLEMRKIVAEYEKTIAQMIEDEQR SM+SQKSFQQL+MEKEQA
Sbjct: 181 EIEANEWKKKYEETREEVLEMRKIVAEYEKTIAQMIEDEQRTSMSSQKSFQQLTMEKEQA 240
Query: 840 LADLNSVERSLSDLFRRYENLKGVLEGFKKNEEP*KNVLRIT*PELNKKSSGTQALKIHA 1019
LADLNSVERSLSDLFRRYENLKGVLEGFKKNEE K + + ++ QALK+HA
Sbjct: 241 LADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKVHA 300
Query: 1020 E 1022
E
Sbjct: 301 E 301
>ref|NP_796063.3| transforming acidic coiled-coil-containing protein 1 long isoform
[Mus musculus].
Length = 776
Score = 369 bits (946), Expect = e-102
Identities = 196/254 (77%), Positives = 213/254 (83%), Gaps = 1/254 (0%)
Frame = +3
Query: 264 ETKSLSFRSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTT-CG 440
+ KS SGCKVKKYEAQ L LD CSQDEGAVIS+IS+I NRDGHATDEEKLAST+ C
Sbjct: 456 KAKSRLITSGCKVKKYEAQPLDLDACSQDEGAVISKISEIPNRDGHATDEEKLASTSSCA 515
Query: 441 QKPTGAEGKGMEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGESPLDGICLSESDKT 620
QK GA KG+EKE KMEK+ + G LE+ EKAPVSVACGGESPLDGICLSE+DKT
Sbjct: 516 QKSAGAGVKGIEKETCQKMEKEELAVHGLLESSSEKAPVSVACGGESPLDGICLSEADKT 575
Query: 621 AVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQ 800
AVLTLIREEIITKEIEANEWKKKYEETR+EVLEMRKIVAEYEKTIAQMIEDEQR SM+SQ
Sbjct: 576 AVLTLIREEIITKEIEANEWKKKYEETREEVLEMRKIVAEYEKTIAQMIEDEQRTSMSSQ 635
Query: 801 KSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEP*KNVLRIT*PELN 980
KSFQQL+MEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEE K + +
Sbjct: 636 KSFQQLTMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVK 695
Query: 981 KKSSGTQALKIHAE 1022
++ QALK+HAE
Sbjct: 696 QEEQRYQALKVHAE 709
Score = 60.8 bits (146), Expect = 2e-09
Identities = 33/56 (58%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +3
Query: 126 MAFSPWQILSPVQWAKWTWSAVR-XXXXXXXXXXXXXXXXXXXXXQAETKSLSFRS 290
MAFSPWQILSPVQWAKWTWSAVR QAETKSLSF S
Sbjct: 1 MAFSPWQILSPVQWAKWTWSAVRGSGAGEDEAGGPEGDPEEEEDSQAETKSLSFSS 56
>ref|NP_996738.2| transforming acidic coiled-coil-containing protein 2 isoform a [Mus
musculus].
Length = 1146
Score = 164 bits (415), Expect = 1e-40
Identities = 85/144 (59%), Positives = 106/144 (73%)
Frame = +3
Query: 591 GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 770
G+ + D + L + R E+I KE E +EW+ KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 937 GLLFQQPDLDSALQVARAEVIAKEREVSEWRDKYEESRREVVEMRKIVAEYEKTIAQMIE 996
Query: 771 DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEP*KN 950
DEQR S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE K
Sbjct: 997 DEQREKSISHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKK 1056
Query: 951 VLRIT*PELNKKSSGTQALKIHAE 1022
+ + K+ QALK+HAE
Sbjct: 1057 CAQEYLSRVKKEEQRYQALKVHAE 1080
>ref|NP_067289.2| transforming acidic coiled-coil-containing protein 2 isoform b [Mus
musculus].
Length = 1036
Score = 164 bits (415), Expect = 1e-40
Identities = 85/144 (59%), Positives = 106/144 (73%)
Frame = +3
Query: 591 GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 770
G+ + D + L + R E+I KE E +EW+ KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 827 GLLFQQPDLDSALQVARAEVIAKEREVSEWRDKYEESRREVVEMRKIVAEYEKTIAQMIE 886
Query: 771 DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEP*KN 950
DEQR S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE K
Sbjct: 887 DEQREKSISHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKK 946
Query: 951 VLRIT*PELNKKSSGTQALKIHAE 1022
+ + K+ QALK+HAE
Sbjct: 947 CAQEYLSRVKKEEQRYQALKVHAE 970
>ref|NP_001004468.1| transforming acidic coiled-coil-containing protein 2 isoform c [Mus
musculus].
Length = 2879
Score = 164 bits (415), Expect = 1e-40
Identities = 85/144 (59%), Positives = 106/144 (73%)
Frame = +3
Query: 591 GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 770
G+ + D + L + R E+I KE E +EW+ KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 2670 GLLFQQPDLDSALQVARAEVIAKEREVSEWRDKYEESRREVVEMRKIVAEYEKTIAQMIE 2729
Query: 771 DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEP*KN 950
DEQR S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE K
Sbjct: 2730 DEQREKSISHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKK 2789
Query: 951 VLRIT*PELNKKSSGTQALKIHAE 1022
+ + K+ QALK+HAE
Sbjct: 2790 CAQEYLSRVKKEEQRYQALKVHAE 2813
>ref|NP_001035525.1| transforming acidic coiled-coil-containing protein 3 [Mus musculus].
Length = 630
Score = 94.0 bits (232), Expect = 2e-19
Identities = 60/175 (34%), Positives = 97/175 (55%), Gaps = 8/175 (4%)
Frame = +3
Query: 522 GTLEAPMEKAPVSVA-----CGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKK 686
G L+ P+ P+ V E +D + S+ D AV+ ++++E + E K
Sbjct: 397 GDLDVPVSAPPLCVLEPRGLLPAEPIVDVLKYSQKDLDAVVNVMQQENL-------ELKS 449
Query: 687 KYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRA---SMTSQKSFQQLSMEKEQALADLNS 857
KYE+ + LEM K V E+EK + +E+ ++ ++ Q++ E++Q ADLNS
Sbjct: 450 KYEDLNTKYLEMGKSVDEFEKIAYKSLEEAEKQRELKEIAEDKIQKVLKERDQLNADLNS 509
Query: 858 VERSLSDLFRRYENLKGVLEGFKKNEEP*KNVLRIT*PELNKKSSGTQALKIHAE 1022
+E+S SDLF+R+E K V+EG++KNEE K + ++ K+ QALKIHAE
Sbjct: 510 MEKSFSDLFKRFEKRKEVIEGYQKNEESLKKYVGECIVKIEKEGQRYQALKIHAE 564
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,081,352
Number of extensions: 687401
Number of successful extensions: 3124
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3102
Number of HSP's successfully gapped: 7
Length of query: 340
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 238
Effective length of database: 12,553,887
Effective search space: 2987825106
Effective search space used: 2987825106
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001901
(1022 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003359527.1| PREDICTED: transforming acidic coiled-coil-c... 281 3e-76
Alignment gi|XP_003128852.1| PREDICTED: transforming acidic coiled-coil-c... 82 4e-16
Alignment gi|XP_003359532.1| PREDICTED: transforming acidic coiled-coil-c... 65 5e-11
>ref|XP_003359527.1| PREDICTED: transforming acidic coiled-coil-containing protein 1-like
[Sus scrofa].
Length = 254
Score = 281 bits (720), Expect = 3e-76
Identities = 151/184 (82%), Positives = 160/184 (86%)
Frame = +3
Query: 471 MEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEI 650
++K M+ ++ D GTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEI
Sbjct: 4 VKKLMTRRVTCDLFRPQGTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEI 63
Query: 651 ITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEK 830
ITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEK
Sbjct: 64 ITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEK 123
Query: 831 EQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEP*KNVLRIT*PELNKKSSGTQALK 1010
EQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEE K + + ++ QALK
Sbjct: 124 EQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALK 183
Query: 1011 IHAE 1022
IHAE
Sbjct: 184 IHAE 187
>ref|XP_003128852.1| PREDICTED: transforming acidic coiled-coil-containing protein 3-like
[Sus scrofa].
Length = 740
Score = 82.4 bits (202), Expect = 4e-16
Identities = 45/119 (37%), Positives = 69/119 (57%)
Frame = +3
Query: 666 EANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALA 845
E E + + E +++VLEM KI+ +E+T+ Q +E+ Q+ ++ Q+ E+E
Sbjct: 556 ENAELRSRCTELQEKVLEMGKIMDRFEETVYQAMEEAQKQKELARVEVQKALQEQEHVSG 615
Query: 846 DLNSVERSLSDLFRRYENLKGVLEGFKKNEEP*KNVLRIT*PELNKKSSGTQALKIHAE 1022
DL SVE+S S+LFRR+E K V+EG++ NE K + L K+ QALK HAE
Sbjct: 616 DLRSVEKSFSELFRRFEKQKEVIEGYRTNEASLKKCVEEYMERLEKEGQRYQALKAHAE 674
>ref|XP_003359532.1| PREDICTED: transforming acidic coiled-coil-containing protein 1
[Sus scrofa].
Length = 521
Score = 65.5 bits (158), Expect = 5e-11
Identities = 33/55 (60%), Positives = 33/55 (60%)
Frame = +3
Query: 126 MAFSPWQILSPVQWAKWTWSAVRXXXXXXXXXXXXXXXXXXXXXQAETKSLSFRS 290
MAFSPWQILSPVQWAKWTWSAVR QAETKSLSF S
Sbjct: 1 MAFSPWQILSPVQWAKWTWSAVRGGGAGGDEAGGSEGDPEEEDSQAETKSLSFSS 55
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,748,108
Number of extensions: 528281
Number of successful extensions: 2521
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2508
Number of HSP's successfully gapped: 3
Length of query: 340
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 240
Effective length of database: 8,854,232
Effective search space: 2125015680
Effective search space used: 2125015680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001901
(1022 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 537 e-150
Sscrofa_Chr14 72 7e-10
>Sscrofa_Chr15
|| Length = 157681621
Score = 537 bits (271), Expect = e-150
Identities = 285/287 (99%), Gaps = 2/287 (0%)
Strand = Plus / Plus
Query: 1 ccacatccgcgcctctcactggaagcgcgtccggcgcctgtcaccggttccctccatttt 60
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55038721 ccacatccgcgcctc-cactggaagcgcgtccggcgcctgtcaccggttccctccattt- 55038778
Query: 61 gaaagggaaaaaaggctctcccccttcccctcctcctaggagccggagctggaggagccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55038779 gaaagggaaaaaaggctctcccccttcccctcctcctaggagccggagctggaggagccg 55038838
Query: 121 cgctcatggcgttcagcccctggcagatcctgtcccccgtgcagtgggcgaaatggacat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55038839 cgctcatggcgttcagcccctggcagatcctgtcccccgtgcagtgggcgaaatggacat 55038898
Query: 181 ggtccgcggtgcgcggcgggggcgccggaggggacgaggccggagggtcggagggcgacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55038899 ggtccgcggtgcgcggcgggggcgccggaggggacgaggccggagggtcggagggcgacc 55038958
Query: 241 ccgaggaggaggactcgcaagccgagaccaaatccttgagtttcagg 287
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55038959 ccgaggaggaggactcgcaagccgagaccaaatccttgagtttcagg 55039005
Score = 311 bits (157), Expect = 4e-82
Identities = 160/161 (99%)
Strand = Plus / Minus
Query: 768 gaagacgaacagagggcgagtatgacctcccagaagagcttccagcagctgagcatggag 827
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54871683 gaagatgaacagagggcgagtatgacctcccagaagagcttccagcagctgagcatggag 54871624
Query: 828 aaggagcaggcgctggccgacctcaactccgtggagaggtccctctccgacctcttcagg 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54871623 aaggagcaggcgctggccgacctcaactccgtggagaggtccctctccgacctcttcagg 54871564
Query: 888 cgatatgagaacctgaaaggcgtcctggaggggttcaagaa 928
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 54871563 cgatatgagaacctgaaaggcgtcctggaggggttcaagaa 54871523
Score = 248 bits (125), Expect = 5e-63
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 345 caggatgaaggagcagtgatctcccagatttctgacatttccaacagggatggccacgca 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55069303 caggatgaaggagcagtgatctcccagatttctgacatttccaacagggatggccacgca 55069362
Query: 405 acagatgaggagaagctggcgtccacgacctgcggtcagaaacccaccggggccgagggg 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55069363 acagatgaggagaagctggcgtccacgacctgcggtcagaaacccaccggggccgagggg 55069422
Query: 465 aaagg 469
|||||
Sbjct: 55069423 aaagg 55069427
Score = 232 bits (117), Expect = 3e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 522 ggaaccttggaggccccgatggagaaggctcctgtgtccgtggcctgcggaggggagagc 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55079996 ggaaccttggaggccccgatggagaaggctcctgtgtccgtggcctgcggaggggagagc 55080055
Query: 582 cccctggacggcatctgcctcagtgaatcagacaagaccgccgtgctcaccctgatc 638
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55080056 cccctggacggcatctgcctcagtgaatcagacaagaccgccgtgctcaccctgatc 55080112
Score = 159 bits (80), Expect = 4e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 646 agataatcactaaagagattgaagcaaatgaatggaagaaaaaatatgaagaaacccgac 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54875357 agataatcactaaagagattgaagcaaatgaatggaagaaaaaatatgaagaaacccgac 54875298
Query: 706 aagaagtcttggagatgagg 725
||||||||||||||||||||
Sbjct: 54875297 aagaagtcttggagatgagg 54875278
Score = 147 bits (74), Expect = 1e-32
Identities = 84/86 (97%), Gaps = 1/86 (1%)
Strand = Plus / Minus
Query: 937 agccttgaaaaaatgtgctcaggattacttagccagagttaaacaagaagagcagcggta 996
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 54871002 agccttgaaaaaatgtgctcaggattacttagccagagttaaacaagaggagcagcggta 54870943
Query: 997 cccaggccctgaaaatccatgcggaa 1022
|||||||||||||||||||||||||
Sbjct: 54870942 -ccaggccctgaaaatccatgcggaa 54870918
Score = 129 bits (65), Expect = 3e-27
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 284 caggagtggctgtaaggtgaagaaatatgaagcccagtctcttgctttggatgggtgttc 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55066573 caggagtggctgtaaggtgaagaaatatgaagcccagtctcttgctttggatgggtgttc 55066632
Query: 344 gcagg 348
|||||
Sbjct: 55066633 gcagg 55066637
Score = 111 bits (56), Expect = 8e-22
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 467 aggcatggagaaagagatgagcctgaagatggagaaggatggatccaccatgcccg 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55072342 aggcatggagaaagagatgagcctgaagatggagaaggatggatccaccatgcccg 55072397
Score = 91.7 bits (46), Expect = 7e-16
Identities = 46/46 (100%)
Strand = Plus / Minus
Query: 723 aggaaaattgtggccgagtatgagaagaccattgcccaaatgatcg 768
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54873231 aggaaaattgtggccgagtatgagaagaccattgcccaaatgatcg 54873186
>Sscrofa_Chr14
|| Length = 153851969
Score = 71.9 bits (36), Expect = 7e-10
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 723 aggaaaattgtggccgagtatgagaagaccattgcccaaatgat 766
|||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 143120522 aggaaaatagtggccgagtatgagaagaccatcgcccaaatgat 143120565
Score = 63.9 bits (32), Expect = 2e-07
Identities = 92/112 (82%)
Strand = Plus / Plus
Query: 808 tccagcagctgagcatggagaaggagcaggcgctggccgacctcaactccgtggagaggt 867
||||||||||| | |||||||||| || || ||||||||||| ||||| ||||||| ||
Sbjct: 143126946 tccagcagctggtcctggagaaggaacaagccctggccgacctgaactcagtggagaagt 143127005
Query: 868 ccctctccgacctcttcaggcgatatgagaacctgaaaggcgtcctggaggg 919
| || |||| ||||||||| |||| ||||| |||| | |||||||||||
Sbjct: 143127006 ctctggccgatctcttcaggagatacgagaagatgaaggaggtcctggaggg 143127057
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,814,474
Number of extensions: 299
Number of successful extensions: 299
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 297
Number of HSP's successfully gapped: 11
Length of query: 1022
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1001
Effective length of database: 2,808,413,156
Effective search space: 2811221569156
Effective search space used: 2811221569156
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)