Animal-Genome cDNA 20110601C-001903


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001903
         (2322 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_002698763.1| PREDICTED: transforming, acidic coiled-coil ...   552   e-157
Alignment   gi|XP_583551.3| PREDICTED: transforming, acidic coiled-coil con...   552   e-157
Alignment   gi|XP_002703282.1| PREDICTED: transforming, acidic coiled-coil ...   299   8e-81
Alignment   gi|NP_001093775.1| transforming, acidic coiled-coil containing ...   182   1e-45
Alignment   gi|XP_002696444.1| PREDICTED: retinoic acid induced 14-like [Bo...    59   2e-08
Alignment   gi|XP_604226.3| PREDICTED: retinoic acid induced 14-like, parti...    59   2e-08
Alignment   gi|XP_002687260.1| PREDICTED: Early endosome antigen 1-like [Bo...    55   4e-07
Alignment   gi|XP_594411.5| PREDICTED: early endosome antigen 1, 162kD [Bos...    55   4e-07
Alignment   gi|NP_001095305.1| myosin-3 [Bos taurus].                             53   1e-06
Alignment   gi|XP_002686286.1| PREDICTED: hypothetical protein [Bos taurus].      52   2e-06

>ref|XP_002698763.1| PREDICTED: transforming, acidic coiled-coil containing protein 1 [Bos
            taurus].
          Length = 742

 Score =  552 bits (1422), Expect = e-157
 Identities = 294/341 (86%), Positives = 301/341 (88%), Gaps = 29/341 (8%)
 Frame = +1

Query: 130  SGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQKPTGAEGK 309
            SGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST+  QKPTGAEGK
Sbjct: 402  SGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTSSVQKPTGAEGK 461

Query: 310  G-----------------------------MEKEMSLKMEKDGSTMPGTLEAPMEKAPVS 402
            G                              EK+   KMEKDGST+P  LE+P+EK PVS
Sbjct: 462  GEPEDDLEYFECSNVPVSAINHAFSSSEAGSEKDPCQKMEKDGSTVPALLESPVEKTPVS 521

Query: 403  VACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAE 582
            VACG ESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAE
Sbjct: 522  VACGVESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAE 581

Query: 583  YEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEG 762
            YEKTIAQMIEDEQR SM+SQKSFQQL+MEKEQALADLNSVERSLSDLFRRYENLKGVLEG
Sbjct: 582  YEKTIAQMIEDEQRTSMSSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYENLKGVLEG 641

Query: 763  FKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHA 942
            FKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHA
Sbjct: 642  FKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHA 701

Query: 943  GLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD 1065
            GLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD
Sbjct: 702  GLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD 742


>ref|XP_583551.3| PREDICTED: transforming, acidic coiled-coil containing protein 1 [Bos
            taurus].
          Length = 666

 Score =  552 bits (1422), Expect = e-157
 Identities = 294/341 (86%), Positives = 301/341 (88%), Gaps = 29/341 (8%)
 Frame = +1

Query: 130  SGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQKPTGAEGK 309
            SGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST+  QKPTGAEGK
Sbjct: 326  SGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTSSVQKPTGAEGK 385

Query: 310  G-----------------------------MEKEMSLKMEKDGSTMPGTLEAPMEKAPVS 402
            G                              EK+   KMEKDGST+P  LE+P+EK PVS
Sbjct: 386  GEPEDDLEYFECSNVPVSAINHAFSSSEAGSEKDPCQKMEKDGSTVPALLESPVEKTPVS 445

Query: 403  VACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAE 582
            VACG ESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAE
Sbjct: 446  VACGVESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAE 505

Query: 583  YEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEG 762
            YEKTIAQMIEDEQR SM+SQKSFQQL+MEKEQALADLNSVERSLSDLFRRYENLKGVLEG
Sbjct: 506  YEKTIAQMIEDEQRTSMSSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYENLKGVLEG 565

Query: 763  FKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHA 942
            FKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHA
Sbjct: 566  FKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHA 625

Query: 943  GLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD 1065
            GLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD
Sbjct: 626  GLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD 666


>ref|XP_002703282.1| PREDICTED: transforming, acidic coiled-coil containing protein 2 [Bos
            taurus].
          Length = 2893

 Score =  299 bits (765), Expect = 8e-81
 Identities = 150/210 (71%), Positives = 179/210 (85%)
 Frame = +1

Query: 433  GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 612
            G+   + D  + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 2684 GLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 2743

Query: 613  DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK 792
            DEQR    S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE LKK
Sbjct: 2744 DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKK 2803

Query: 793  CAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVE 972
            CAQ+YL+RVK+EEQRYQALK+HAEEKLD+AN EIAQVR KA+ E AA  A LRKEQ++V+
Sbjct: 2804 CAQEYLSRVKKEEQRYQALKVHAEEKLDRANAEIAQVRGKAQQEQAAYQASLRKEQLRVD 2863

Query: 973  SLERALQQKNQEIEELTKICDELIAKLGKT 1062
            +LER L+QKN+EIEELTKICDELIAK+GK+
Sbjct: 2864 ALERTLEQKNKEIEELTKICDELIAKMGKS 2893


>ref|NP_001093775.1| transforming, acidic coiled-coil containing protein 3 [Bos taurus].
          Length = 810

 Score =  182 bits (462), Expect = 1e-45
 Identities = 88/170 (51%), Positives = 132/170 (77%)
 Frame = +1

Query: 544  RQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDL 723
            ++ +LEM KI+  +E T+ Q++E+ Q+    ++   Q++  EK Q  ADL+S+E+S SDL
Sbjct: 638  QERLLEMGKIMDSFEGTVYQVMEESQKQKELTKAEMQKVLKEKAQLTADLHSMEKSFSDL 697

Query: 724  FRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQV 903
            F+R+E  K V+EG++ NEE+LKKC +DY+ RV++E Q+YQALK  AEEKL +A+EEIAQV
Sbjct: 698  FKRFEKQKEVIEGYRTNEESLKKCVEDYIERVEKEAQKYQALKAQAEEKLRQASEEIAQV 757

Query: 904  RTKAKAESAALHAGLRKEQMKVESLERALQQKNQEIEELTKICDELIAKL 1053
            R+KA+ ++ AL A LRKEQM+V SLE+ ++QK +E +ELT+ICD+LI+K+
Sbjct: 758  RSKAQTDALALQAVLRKEQMRVHSLEKVVEQKTKENDELTRICDDLISKM 807


>ref|XP_002696444.1| PREDICTED: retinoic acid induced 14-like [Bos taurus].
          Length = 951

 Score = 58.5 bits (140), Expect = 2e-08
 Identities = 54/283 (19%), Positives = 136/283 (48%), Gaps = 5/283 (1%)
 Frame = +1

Query: 214  ISDISNRDGHATDEEKLASTTCGQKPTGAEGKGMEKEMSLKMEKDGSTMPGTLEAPMEKA 393
            + D++    H  + EKL   T   +    E     K    K+  + + +   ++A  E +
Sbjct: 639  LEDVTAEYIHKAEHEKLMQVTNVSRAKAEEALSEMKSQYSKVLNELTQLKQLVDAQKENS 698

Query: 394  PVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKI 573
             VS+       +  +  +  +    ++ ++E + +KE E  + +K+  E +  + +    
Sbjct: 699  -VSIT-EHLQVITTLRTTAKEMEGKISSLKEHLASKEGEVAKLEKQLLEEKAAMTDAMVP 756

Query: 574  VAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGV 753
             + YEK  + +   E   S+ + K    +  EKE+A +++  +   +S + R  EN++ +
Sbjct: 757  RSAYEKLQSSL---ESEVSVLASKLRDSVK-EKEKAHSEVAQIRSEVSQMKREKENIQTL 812

Query: 754  LEGFKKN-EEALKKC--AQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAE 924
            L+  ++   E L+KC  AQ+ LA +K+  +    L+   ++K+++ ++E+ +++    + 
Sbjct: 813  LKSKEQEVNELLQKCQHAQEELAEMKRHSESSSKLEEDKDKKINEMSKEVTKLKEALNSL 872

Query: 925  SAALH--AGLRKEQMKVESLERALQQKNQEIEELTKICDELIA 1047
            S   +  +  +++  ++E+L++ ++Q   ++ E  K   E+I+
Sbjct: 873  SQLSYSASSSKRQSQQLEALQQQVKQLQNQLAECKKQHQEVIS 915


>ref|XP_604226.3| PREDICTED: retinoic acid induced 14-like, partial [Bos taurus].
          Length = 939

 Score = 58.5 bits (140), Expect = 2e-08
 Identities = 54/283 (19%), Positives = 136/283 (48%), Gaps = 5/283 (1%)
 Frame = +1

Query: 214  ISDISNRDGHATDEEKLASTTCGQKPTGAEGKGMEKEMSLKMEKDGSTMPGTLEAPMEKA 393
            + D++    H  + EKL   T   +    E     K    K+  + + +   ++A  E +
Sbjct: 627  LEDVTAEYIHKAEHEKLMQVTNVSRAKAEEALSEMKSQYSKVLNELTQLKQLVDAQKENS 686

Query: 394  PVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKI 573
             VS+       +  +  +  +    ++ ++E + +KE E  + +K+  E +  + +    
Sbjct: 687  -VSIT-EHLQVITTLRTTAKEMEGKISSLKEHLASKEGEVAKLEKQLLEEKAAMTDAMVP 744

Query: 574  VAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGV 753
             + YEK  + +   E   S+ + K    +  EKE+A +++  +   +S + R  EN++ +
Sbjct: 745  RSAYEKLQSSL---ESEVSVLASKLRDSVK-EKEKAHSEVAQIRSEVSQMKREKENIQTL 800

Query: 754  LEGFKKN-EEALKKC--AQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAE 924
            L+  ++   E L+KC  AQ+ LA +K+  +    L+   ++K+++ ++E+ +++    + 
Sbjct: 801  LKSKEQEVNELLQKCQHAQEELAEMKRHSESSSKLEEDKDKKINEMSKEVTKLKEALNSL 860

Query: 925  SAALH--AGLRKEQMKVESLERALQQKNQEIEELTKICDELIA 1047
            S   +  +  +++  ++E+L++ ++Q   ++ E  K   E+I+
Sbjct: 861  SQLSYSASSSKRQSQQLEALQQQVKQLQNQLAECKKQHQEVIS 903


>ref|XP_002687260.1| PREDICTED: Early endosome antigen 1-like [Bos taurus].
          Length = 1432

 Score = 54.7 bits (130), Expect = 4e-07
 Identities = 43/193 (22%), Positives = 91/193 (47%), Gaps = 20/193 (10%)
 Frame = +1

Query: 499  KEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKE- 675
            +++ + +   K ++     L++ ++  E ++ +    E + +   T Q+  +Q ++++  
Sbjct: 462  RQLSSEKLMDKEQQVADLQLKLSRLEEELKEKVTNSTELQHQLDKTKQQHQEQQALQQST 521

Query: 676  -----QALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRY 840
                 +A  DL  V R + D  ++ +NL+ +L+  K+N   L+K  +D  A+++  E   
Sbjct: 522  TAKLREAQNDLEQVLRQIGDKDQKIQNLEALLQKSKENISLLEKEREDLYAKIQAGEGET 581

Query: 841  QALKIHAEEKLDKANEEIAQVRTKAKAESAA-------LH-------AGLRKEQMKVESL 978
              L    +EK     E++ Q+  K K +S +       LH       A LR  Q +V SL
Sbjct: 582  AVLN-QLQEKNHTLQEQVTQLTEKLKNQSESHKQAQENLHDQVQEQKAHLRAAQDRVLSL 640

Query: 979  ERALQQKNQEIEE 1017
            E ++ + N ++ E
Sbjct: 641  ESSINELNSQLNE 653


>ref|XP_594411.5| PREDICTED: early endosome antigen 1, 162kD [Bos taurus].
          Length = 1461

 Score = 54.7 bits (130), Expect = 4e-07
 Identities = 43/193 (22%), Positives = 91/193 (47%), Gaps = 20/193 (10%)
 Frame = +1

Query: 499  KEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKE- 675
            +++ + +   K ++     L++ ++  E ++ +    E + +   T Q+  +Q ++++  
Sbjct: 462  RQLSSEKLMDKEQQVADLQLKLSRLEEELKEKVTNSTELQHQLDKTKQQHQEQQALQQST 521

Query: 676  -----QALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRY 840
                 +A  DL  V R + D  ++ +NL+ +L+  K+N   L+K  +D  A+++  E   
Sbjct: 522  TAKLREAQNDLEQVLRQIGDKDQKIQNLEALLQKSKENISLLEKEREDLYAKIQAGEGET 581

Query: 841  QALKIHAEEKLDKANEEIAQVRTKAKAESAA-------LH-------AGLRKEQMKVESL 978
              L    +EK     E++ Q+  K K +S +       LH       A LR  Q +V SL
Sbjct: 582  AVLN-QLQEKNHTLQEQVTQLTEKLKNQSESHKQAQENLHDQVQEQKAHLRAAQDRVLSL 640

Query: 979  ERALQQKNQEIEE 1017
            E ++ + N ++ E
Sbjct: 641  ESSINELNSQLNE 653


>ref|NP_001095305.1| myosin-3 [Bos taurus].
          Length = 1940

 Score = 53.1 bits (126), Expect = 1e-06
 Identities = 60/210 (28%), Positives = 97/210 (46%), Gaps = 23/210 (10%)
 Frame = +1

Query: 502  EIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDE-----------QRA--SMTSQ 642
            E E +E+K + ++    V  + K  A  EK I + +ED+           QR+   +++Q
Sbjct: 1219 EKEKSEFKLELDDLGSNVESVSKSKANLEK-ICRTLEDQLSEARGKNEEIQRSLSELSTQ 1277

Query: 643  KSFQQ-----LSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDY 807
            KS  Q     LS + E+  + ++ + RS     ++ E LK  LE   K + AL    Q  
Sbjct: 1278 KSRLQTEAGELSRQLEEKESTVSQLSRSKQAFTQQIEELKRQLEEESKAKSALAHALQSA 1337

Query: 808  -----LARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVE 972
                 L R + EE+  Q  K   +  L KAN E+AQ RTK + ++       R E++  E
Sbjct: 1338 RHDCDLLREQYEEE--QEAKAELQRALSKANSEVAQWRTKYETDAIQ-----RTEEL--E 1388

Query: 973  SLERALQQKNQEIEELTKICDELIAKLGKT 1062
              ++ L Q+ Q+ EE  +  +   A L KT
Sbjct: 1389 EAKKKLAQRLQDSEEQVEAVNAKCASLEKT 1418


>ref|XP_002686286.1| PREDICTED: hypothetical protein [Bos taurus].
          Length = 638

 Score = 52.4 bits (124), Expect = 2e-06
 Identities = 74/311 (23%), Positives = 141/311 (45%), Gaps = 31/311 (9%)
 Frame = +1

Query: 202  VISQISDISNRDGHATDE-----EKLASTTCGQKPTGAEGKGME---KEMSLKME---KD 348
            ++  I D        TDE     + LA  T G+ P+  E + +E   KE+S K+E   KD
Sbjct: 210  ILGMIKDELGECCKKTDELCNAAKTLAECTKGE-PSEREKELLEQKYKEISQKVEDQKKD 268

Query: 349  GSTMPGTL-EAPMEKAPVS-------VACGGESPLDGICLSESDKTAVLTLIREEIITKE 504
                 G + E   E+  +S       VA   E  L    L +  K     L  +E +++E
Sbjct: 269  FEECVGKMIEKTRERQKISAEEYAKRVAAEREKEL----LEQKVKELQEQLEDQERVSEE 324

Query: 505  IEANEWKKKYEETRQEVLEMRKIVAEYEKTI---AQMIEDEQRASMTSQKSFQQLSMEKE 675
            +   + +K+ E  +    EM   +A++E  +    QM+++ Q+     +K+F++   +  
Sbjct: 325  LGVKKTEKQREREKTSAAEM---LAQWEDAMWEKKQMVKELQQKLEDREKTFERFRDKLT 381

Query: 676  QALADLNSVERSLSDLFRRYENLKGVLE-----GFKKNEEALKKCA----QDYLARVKQE 828
            + + + + + R +++  +  E L  +LE       KK E+A ++ A    +    +VK+ 
Sbjct: 382  KEMRERDDLLRKMNERIQMLERLLRLLETLEEQDMKKEEQAKREAAERENEPLEQKVKEL 441

Query: 829  EQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVESLERALQQKNQE 1008
            +Q+ +  +   E   DK  EE+ + R KA AE       + +E    ESLE+ +++  Q 
Sbjct: 442  QQKSENQEKVFEVLRDKMTEELNE-REKASAEEQIRREAVEREN---ESLEKQVKELQQN 497

Query: 1009 IEELTKICDEL 1041
            +E+  ++   L
Sbjct: 498  LEDQGRVFQRL 508


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 81,196,219
Number of extensions: 2196273
Number of successful extensions: 10195
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 10022
Number of HSP's successfully gapped: 25
Length of query: 774
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 664
Effective length of database: 14,041,694
Effective search space: 9323684816
Effective search space used: 9323684816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001903
         (2322 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_856593.1| PREDICTED: similar to transforming acidic coile...   567   e-161
Alignment   gi|XP_532800.2| PREDICTED: similar to transforming, acidic coil...   566   e-161
Alignment   gi|XP_856634.1| PREDICTED: similar to transforming, acidic coil...   551   e-157
Alignment   gi|XP_848665.1| PREDICTED: similar to transforming, acidic coil...   551   e-156
Alignment   gi|XP_535042.2| PREDICTED: similar to transforming, acidic coil...   299   9e-81
Alignment   gi|XP_536226.2| PREDICTED: similar to transforming acidic coile...   189   1e-47
Alignment   gi|XP_852295.1| PREDICTED: similar to Transforming acidic coile...   157   4e-38
Alignment   gi|XP_532649.2| PREDICTED: similar to Early endosome antigen 1 ...    55   4e-07
Alignment   gi|NP_001107184.1| myosin-3 [Canis lupus familiaris].                 52   3e-06
Alignment   gi|XP_850299.1| PREDICTED: similar to myosin, heavy polypeptide...    52   3e-06

>ref|XP_856593.1| PREDICTED: similar to transforming acidic coiled-coil containing
            protein 1 short isoform isoform 3 [Canis familiaris].
          Length = 366

 Score =  567 bits (1461), Expect = e-161
 Identities = 302/342 (88%), Positives = 307/342 (89%), Gaps = 5/342 (1%)
 Frame = +1

Query: 55   GGAHSQSPRGREPATERPPRPHENAS-----GCKVKKYEAQSLALDGCSQDEGAVISQIS 219
            GGA  +   G E   E      E  S     GCKVKKYE QSLALDGCSQDEGAVISQIS
Sbjct: 25   GGAGEEEAGGPEGDPEDEDSQAETKSLSFRSGCKVKKYETQSLALDGCSQDEGAVISQIS 84

Query: 220  DISNRDGHATDEEKLASTTCGQKPTGAEGKGMEKEMSLKMEKDGSTMPGTLEAPMEKAPV 399
            DISNRDGHATDEEKLAST+ GQK  GAE KG+EKEM  KMEKDGS M G LE+ MEKAPV
Sbjct: 85   DISNRDGHATDEEKLASTSSGQKSAGAEVKGIEKEMCQKMEKDGSAMTGLLESSMEKAPV 144

Query: 400  SVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVA 579
            SVAC GESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVA
Sbjct: 145  SVACEGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVA 204

Query: 580  EYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLE 759
            EYEKTIAQMIEDEQR SMTSQKSFQQL+MEKEQALADLNSVERSLSDLFRRYENLKGVLE
Sbjct: 205  EYEKTIAQMIEDEQRTSMTSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYENLKGVLE 264

Query: 760  GFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALH 939
            GFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALH
Sbjct: 265  GFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALH 324

Query: 940  AGLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD 1065
            AGLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD
Sbjct: 325  AGLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD 366


>ref|XP_532800.2| PREDICTED: similar to transforming, acidic coiled-coil containing
            protein 1 isoform 1 [Canis familiaris].
          Length = 771

 Score =  566 bits (1459), Expect = e-161
 Identities = 295/312 (94%), Positives = 299/312 (95%)
 Frame = +1

Query: 130  SGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQKPTGAEGK 309
            SGCKVKKYE QSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST+ GQK  GAE K
Sbjct: 460  SGCKVKKYETQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTSSGQKSAGAEVK 519

Query: 310  GMEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREE 489
            G+EKEM  KMEKDGS M G LE+ MEKAPVSVAC GESPLDGICLSESDKTAVLTLIREE
Sbjct: 520  GIEKEMCQKMEKDGSAMTGLLESSMEKAPVSVACEGESPLDGICLSESDKTAVLTLIREE 579

Query: 490  IITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSME 669
            IITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQR SMTSQKSFQQL+ME
Sbjct: 580  IITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRTSMTSQKSFQQLTME 639

Query: 670  KEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQAL 849
            KEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQAL
Sbjct: 640  KEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQAL 699

Query: 850  KIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVESLERALQQKNQEIEELTKI 1029
            KIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVESLERALQQKNQEIEELTKI
Sbjct: 700  KIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVESLERALQQKNQEIEELTKI 759

Query: 1030 CDELIAKLGKTD 1065
            CDELIAKLGKTD
Sbjct: 760  CDELIAKLGKTD 771


>ref|XP_856634.1| PREDICTED: similar to transforming, acidic coiled-coil containing
            protein 1 isoform 4 [Canis familiaris].
          Length = 395

 Score =  551 bits (1421), Expect = e-157
 Identities = 302/371 (81%), Positives = 307/371 (82%), Gaps = 34/371 (9%)
 Frame = +1

Query: 55   GGAHSQSPRGREPATERPPRPHENAS-----GCKVKKYEAQSLALDGCSQDEGAVISQIS 219
            GGA  +   G E   E      E  S     GCKVKKYE QSLALDGCSQDEGAVISQIS
Sbjct: 25   GGAGEEEAGGPEGDPEDEDSQAETKSLSFRSGCKVKKYETQSLALDGCSQDEGAVISQIS 84

Query: 220  DISNRDGHATDEEKLASTTCGQKPTGAEGKG----------------------------- 312
            DISNRDGHATDEEKLAST+ GQK  GAE KG                             
Sbjct: 85   DISNRDGHATDEEKLASTSSGQKSAGAEVKGEPEEDLEYFECSNVPVSTINHAFSSSEAG 144

Query: 313  MEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEI 492
            +EKEM  KMEKDGS M G LE+ MEKAPVSVAC GESPLDGICLSESDKTAVLTLIREEI
Sbjct: 145  IEKEMCQKMEKDGSAMTGLLESSMEKAPVSVACEGESPLDGICLSESDKTAVLTLIREEI 204

Query: 493  ITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEK 672
            ITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQR SMTSQKSFQQL+MEK
Sbjct: 205  ITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRTSMTSQKSFQQLTMEK 264

Query: 673  EQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALK 852
            EQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALK
Sbjct: 265  EQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALK 324

Query: 853  IHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVESLERALQQKNQEIEELTKIC 1032
            IHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVESLERALQQKNQEIEELTKIC
Sbjct: 325  IHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVESLERALQQKNQEIEELTKIC 384

Query: 1033 DELIAKLGKTD 1065
            DELIAKLGKTD
Sbjct: 385  DELIAKLGKTD 395


>ref|XP_848665.1| PREDICTED: similar to transforming, acidic coiled-coil containing
            protein 1 isoform 2 [Canis familiaris].
          Length = 800

 Score =  551 bits (1419), Expect = e-156
 Identities = 295/341 (86%), Positives = 299/341 (87%), Gaps = 29/341 (8%)
 Frame = +1

Query: 130  SGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQKPTGAEGK 309
            SGCKVKKYE QSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST+ GQK  GAE K
Sbjct: 460  SGCKVKKYETQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTSSGQKSAGAEVK 519

Query: 310  G-----------------------------MEKEMSLKMEKDGSTMPGTLEAPMEKAPVS 402
            G                             +EKEM  KMEKDGS M G LE+ MEKAPVS
Sbjct: 520  GEPEEDLEYFECSNVPVSTINHAFSSSEAGIEKEMCQKMEKDGSAMTGLLESSMEKAPVS 579

Query: 403  VACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAE 582
            VAC GESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAE
Sbjct: 580  VACEGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAE 639

Query: 583  YEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEG 762
            YEKTIAQMIEDEQR SMTSQKSFQQL+MEKEQALADLNSVERSLSDLFRRYENLKGVLEG
Sbjct: 640  YEKTIAQMIEDEQRTSMTSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYENLKGVLEG 699

Query: 763  FKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHA 942
            FKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHA
Sbjct: 700  FKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHA 759

Query: 943  GLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD 1065
            GLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD
Sbjct: 760  GLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD 800


>ref|XP_535042.2| PREDICTED: similar to transforming, acidic coiled-coil containing
            protein 2 isoform a [Canis familiaris].
          Length = 2885

 Score =  299 bits (765), Expect = 9e-81
 Identities = 150/210 (71%), Positives = 179/210 (85%)
 Frame = +1

Query: 433  GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 612
            G+   + D  + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 2676 GLLFQQPDLDSALRIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 2735

Query: 613  DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK 792
            DEQR    S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE LKK
Sbjct: 2736 DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKK 2795

Query: 793  CAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVE 972
            CAQ+YL+RVK+EEQRYQALK+HAEEKLD+AN EIAQVR KA+ E AA  A LRKEQ++V+
Sbjct: 2796 CAQEYLSRVKKEEQRYQALKVHAEEKLDRANAEIAQVRGKAQQEQAAYQASLRKEQLRVD 2855

Query: 973  SLERALQQKNQEIEELTKICDELIAKLGKT 1062
            +LER L+QKN+EIEELTKICDELIAK+GK+
Sbjct: 2856 ALERTLEQKNKEIEELTKICDELIAKMGKS 2885


>ref|XP_536226.2| PREDICTED: similar to transforming acidic coiled coil 3 [Canis
            familiaris].
          Length = 945

 Score =  189 bits (479), Expect = 1e-47
 Identities = 129/363 (35%), Positives = 199/363 (54%), Gaps = 10/363 (2%)
 Frame = +1

Query: 1    GEPRSKDRRSRSAALRAMGGAHSQSPRGREPATERPPRPHENASGCKVKKYEAQSLALDG 180
            GE  + +R   SA   ++GG     P+  EPA++       + +       E   L   G
Sbjct: 597  GEEGAAERAGASAPAGSLGGP----PQDPEPASDPKEECFRDPTEVLGTGAEVDYLEQFG 652

Query: 181  CSQDEGAVISQISDISNRDGHATDEEK----LASTTCGQKPTGAEGKGMEKEMSLKMEKD 348
             S  + + + + S     D    D  +    +A  T   +   A   G   E  L +E D
Sbjct: 653  SSLFKESALRKQSLYLKFDPLLKDSPRRPVPVAPETNSTQDMAAPPSGSPTEAKL-VELD 711

Query: 349  GSTMPGTLEAP-MEKAPVSVACGGE-----SPLDGICLSESDKTAVLTLIREEIITKEIE 510
                 G  +AP ++  P     GG      S +D +  ++ D  A +  +REE       
Sbjct: 712  ---FLGAPDAPVLDPPPCVFGPGGPLLPLGSIVDVLQYTQKDMDAAVEAMREE------- 761

Query: 511  ANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALAD 690
             +  + + +    + LEM KI+  +E  + Q +E+ Q+    ++   Q++  EK+Q  AD
Sbjct: 762  NSLLRSRCDTLHAKNLEMGKIMDGFEGIVYQAMEEAQKQKELAKAEIQKILKEKDQLAAD 821

Query: 691  LNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEK 870
            L+S+E+S SDLF+R+E  K V+EG+  NEE+LKKC +DY+ R+++E QRYQALK HAEEK
Sbjct: 822  LSSMEKSFSDLFKRFEKQKEVIEGYHTNEESLKKCVEDYIVRIEKEGQRYQALKAHAEEK 881

Query: 871  LDKANEEIAQVRTKAKAESAALHAGLRKEQMKVESLERALQQKNQEIEELTKICDELIAK 1050
            L  A+EEIAQVR+KA+AE+ A  A LRKEQM+++SLE+ ++QK +E EELT+ICD+LI+K
Sbjct: 882  LKLASEEIAQVRSKAQAEALAFQASLRKEQMRIQSLEKTVEQKTKENEELTRICDDLISK 941

Query: 1051 LGK 1059
            + K
Sbjct: 942  MEK 944


>ref|XP_852295.1| PREDICTED: similar to Transforming acidic coiled-coil-containing
            protein 3 (ERIC-1) [Canis familiaris].
          Length = 450

 Score =  157 bits (397), Expect = 4e-38
 Identities = 76/136 (55%), Positives = 108/136 (79%)
 Frame = +1

Query: 652  QQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEE 831
            Q++  EK+Q  A L+S+E+S SDLF+R+E  K V++G+  NEE+LKKC +DY+ R+++E 
Sbjct: 314  QKILKEKDQLAAYLSSMEKSFSDLFKRFEKQKEVIQGYHTNEESLKKCVEDYIVRIEKEG 373

Query: 832  QRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVESLERALQQKNQEI 1011
            Q YQALK HAEEKL  A+EEIAQVR KA+AE+ A  A LRKEQM+++SLE+ ++QK +E 
Sbjct: 374  QWYQALKAHAEEKLKLASEEIAQVRGKAQAEALAFQASLRKEQMRIQSLEKTVEQKTKEN 433

Query: 1012 EELTKICDELIAKLGK 1059
            EEL +IC++LI+K+ K
Sbjct: 434  EELIRICEDLISKMEK 449


>ref|XP_532649.2| PREDICTED: similar to Early endosome antigen 1 (Endosome-associated
            protein p162) (Zinc finger FYVE domain containing protein
            2) [Canis familiaris].
          Length = 1514

 Score = 54.7 bits (130), Expect = 4e-07
 Identities = 49/196 (25%), Positives = 91/196 (46%), Gaps = 15/196 (7%)
 Frame = +1

Query: 475  LIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQ 654
            L  E+++ KE +  + + K     +++ E      E +  + +M +  Q      Q++ Q
Sbjct: 546  LSSEKLMDKEQQVADLQLKLSRLEEQLKEKVTNSTELQHQLDKMKQQHQE-----QQALQ 600

Query: 655  QLSMEK-EQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEE 831
            Q +  K  +A  DL  V R + D  ++ +NL+ +L+  K+N   L+K  +D  A+++  E
Sbjct: 601  QSTTAKLREAQNDLEQVLRQIGDKDQKIQNLEALLQKSKENISLLEKEREDLYAKIQAGE 660

Query: 832  QRYQALKIHAEEKLDKANEEIAQVRTKAKAESAA-------LH-------AGLRKEQMKV 969
                 L    +EK     E++ Q+  K K +S +       LH       A LR  Q +V
Sbjct: 661  GETAVLN-QLQEKNHNLQEQVTQLTEKLKNQSESHKQAQENLHDQVQEQKAHLRAAQDRV 719

Query: 970  ESLERALQQKNQEIEE 1017
             SLE ++ + N ++ E
Sbjct: 720  LSLETSVNELNSQLNE 735


>ref|NP_001107184.1| myosin-3 [Canis lupus familiaris].
          Length = 1920

 Score = 51.6 bits (122), Expect = 3e-06
 Identities = 58/211 (27%), Positives = 94/211 (44%), Gaps = 24/211 (11%)
 Frame = +1

Query: 502  EIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDE-------------QRASMTSQ 642
            E E +E+K + ++    V  + K  A  EK I + +ED+               + + +Q
Sbjct: 1216 EKEKSEFKLEIDDLSSNVESVSKSKANLEK-ICRTLEDQLSEARGKNEEIQRSMSELATQ 1274

Query: 643  KSFQQ-----LSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQ-- 801
            KS  Q     LS + E+  + ++ + RS     ++ E LK  LE   K + AL    Q  
Sbjct: 1275 KSRLQTEAGELSRQLEEKESIVSQLSRSKQAFTQQIEELKRQLEEESKAKNALAHALQSS 1334

Query: 802  ----DYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKV 969
                D L    +EEQ  +A     +  L KAN E+AQ RTK + ++       R E++  
Sbjct: 1335 RHDCDLLREQYEEEQEGKA---ELQRALSKANSEVAQWRTKYETDAIQ-----RTEEL-- 1384

Query: 970  ESLERALQQKNQEIEELTKICDELIAKLGKT 1062
            E  ++ L Q+ Q+ EE  +  +   A L KT
Sbjct: 1385 EEAKKKLAQRLQDSEEQVEAVNAKCASLEKT 1415


>ref|XP_850299.1| PREDICTED: similar to myosin, heavy polypeptide 13, skeletal muscle
            isoform 2 [Canis familiaris].
          Length = 1342

 Score = 51.6 bits (122), Expect = 3e-06
 Identities = 49/215 (22%), Positives = 102/215 (47%), Gaps = 20/215 (9%)
 Frame = +1

Query: 478  IREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQ 657
            ++ +I   E+   + +K+   T  +V  + + +   E+ I+++ ++++      Q++   
Sbjct: 954  LKRDIDDLELTLTKVEKEKHATENKVKNLSEEMTALEENISKLTKEKKSLQEAHQQALDD 1013

Query: 658  LSMEKEQA--LADLN-SVERSLSDL---FRRYENLKGVLEGFKKNEEALKKCAQDYLARV 819
            L +E+++   L  +N  +E+   DL     + + L+  LE  KK  E   K +Q+ +  +
Sbjct: 1014 LQVEEDKVNGLIKINVKLEQQTDDLEGSLEQEKKLRADLERIKKKLEGDLKLSQESIMDL 1073

Query: 820  KQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAE---SAALHAGLRKEQMKVESLE--- 981
            + ++Q+        EEKL K   EI+Q++TK   E   S  L   +++ Q ++E LE   
Sbjct: 1074 ENDKQQ-------VEEKLKKKEFEISQLQTKIDDEQVHSLQLQKKIKELQARIEELEEEI 1126

Query: 982  --------RALQQKNQEIEELTKICDELIAKLGKT 1062
                    +A +Q++    EL +I + L    G T
Sbjct: 1127 EAERASRAKAEKQRSDLSRELEEISERLEEASGVT 1161


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 84,079,664
Number of extensions: 2138047
Number of successful extensions: 11289
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 11096
Number of HSP's successfully gapped: 21
Length of query: 774
Length of database: 18,874,504
Length adjustment: 111
Effective length of query: 663
Effective length of database: 15,174,208
Effective search space: 10060499904
Effective search space used: 10060499904
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001903
         (2322 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001139688.1| transforming acidic coiled-coil-containing p...   544   e-154
Alignment   gi|NP_001116296.1| transforming acidic coiled-coil-containing p...   544   e-154
Alignment   gi|NP_006274.2| transforming acidic coiled-coil-containing prot...   544   e-154
Alignment   gi|NP_996744.2| transforming acidic coiled-coil-containing prot...   297   3e-80
Alignment   gi|NP_996743.1| transforming acidic coiled-coil-containing prot...   297   3e-80
Alignment   gi|NP_996742.1| transforming acidic coiled-coil-containing prot...   297   3e-80
Alignment   gi|NP_008928.1| transforming acidic coiled-coil-containing prot...   297   3e-80
Alignment   gi|NP_006333.1| transforming acidic coiled-coil-containing prot...   210   4e-54
Alignment   gi|NP_001804.2| centromere-associated protein E [Homo sapiens].       55   2e-07
Alignment   gi|NP_003793.2| myosin-13 [Homo sapiens].                             53   1e-06

>ref|NP_001139688.1| transforming acidic coiled-coil-containing protein 1 isoform 3 [Homo
            sapiens].
          Length = 610

 Score =  544 bits (1402), Expect = e-154
 Identities = 290/341 (85%), Positives = 299/341 (87%), Gaps = 29/341 (8%)
 Frame = +1

Query: 130  SGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQKPTGAEGK 309
            SGCKVKK+E QSLALD CS+DEGAVISQISDISNRDGHATDEEKLAST+CGQK  GAE K
Sbjct: 270  SGCKVKKHETQSLALDACSRDEGAVISQISDISNRDGHATDEEKLASTSCGQKSAGAEVK 329

Query: 310  G-----------------------------MEKEMSLKMEKDGSTMPGTLEAPMEKAPVS 402
            G                             +EKE   KME+DGST+ G LE+  EKAPVS
Sbjct: 330  GEPEEDLEYFECSNVPVSTINHAFSSSEAGIEKETCQKMEEDGSTVLGLLESSAEKAPVS 389

Query: 403  VACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAE 582
            V+CGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAE
Sbjct: 390  VSCGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAE 449

Query: 583  YEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEG 762
            YEKTIAQMIEDEQR SMTSQKSFQQL+MEKEQALADLNSVERSLSDLFRRYENLKGVLEG
Sbjct: 450  YEKTIAQMIEDEQRTSMTSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYENLKGVLEG 509

Query: 763  FKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHA 942
            FKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHA
Sbjct: 510  FKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHA 569

Query: 943  GLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD 1065
            GLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD
Sbjct: 570  GLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD 610


>ref|NP_001116296.1| transforming acidic coiled-coil-containing protein 1 isoform 2 [Homo
            sapiens].
          Length = 395

 Score =  544 bits (1402), Expect = e-154
 Identities = 290/341 (85%), Positives = 299/341 (87%), Gaps = 29/341 (8%)
 Frame = +1

Query: 130  SGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQKPTGAEGK 309
            SGCKVKK+E QSLALD CS+DEGAVISQISDISNRDGHATDEEKLAST+CGQK  GAE K
Sbjct: 55   SGCKVKKHETQSLALDACSRDEGAVISQISDISNRDGHATDEEKLASTSCGQKSAGAEVK 114

Query: 310  G-----------------------------MEKEMSLKMEKDGSTMPGTLEAPMEKAPVS 402
            G                             +EKE   KME+DGST+ G LE+  EKAPVS
Sbjct: 115  GEPEEDLEYFECSNVPVSTINHAFSSSEAGIEKETCQKMEEDGSTVLGLLESSAEKAPVS 174

Query: 403  VACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAE 582
            V+CGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAE
Sbjct: 175  VSCGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAE 234

Query: 583  YEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEG 762
            YEKTIAQMIEDEQR SMTSQKSFQQL+MEKEQALADLNSVERSLSDLFRRYENLKGVLEG
Sbjct: 235  YEKTIAQMIEDEQRTSMTSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYENLKGVLEG 294

Query: 763  FKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHA 942
            FKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHA
Sbjct: 295  FKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHA 354

Query: 943  GLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD 1065
            GLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD
Sbjct: 355  GLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD 395


>ref|NP_006274.2| transforming acidic coiled-coil-containing protein 1 isoform 1 [Homo
            sapiens].
          Length = 805

 Score =  544 bits (1402), Expect = e-154
 Identities = 290/341 (85%), Positives = 299/341 (87%), Gaps = 29/341 (8%)
 Frame = +1

Query: 130  SGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQKPTGAEGK 309
            SGCKVKK+E QSLALD CS+DEGAVISQISDISNRDGHATDEEKLAST+CGQK  GAE K
Sbjct: 465  SGCKVKKHETQSLALDACSRDEGAVISQISDISNRDGHATDEEKLASTSCGQKSAGAEVK 524

Query: 310  G-----------------------------MEKEMSLKMEKDGSTMPGTLEAPMEKAPVS 402
            G                             +EKE   KME+DGST+ G LE+  EKAPVS
Sbjct: 525  GEPEEDLEYFECSNVPVSTINHAFSSSEAGIEKETCQKMEEDGSTVLGLLESSAEKAPVS 584

Query: 403  VACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAE 582
            V+CGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAE
Sbjct: 585  VSCGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAE 644

Query: 583  YEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEG 762
            YEKTIAQMIEDEQR SMTSQKSFQQL+MEKEQALADLNSVERSLSDLFRRYENLKGVLEG
Sbjct: 645  YEKTIAQMIEDEQRTSMTSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYENLKGVLEG 704

Query: 763  FKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHA 942
            FKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHA
Sbjct: 705  FKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHA 764

Query: 943  GLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD 1065
            GLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD
Sbjct: 765  GLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD 805


>ref|NP_996744.2| transforming acidic coiled-coil-containing protein 2 isoform a [Homo
            sapiens].
          Length = 2948

 Score =  297 bits (760), Expect = 3e-80
 Identities = 149/210 (70%), Positives = 179/210 (85%)
 Frame = +1

Query: 433  GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 612
            G+   + D  + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 2739 GLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 2798

Query: 613  DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK 792
            DEQR    S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE LK+
Sbjct: 2799 DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKR 2858

Query: 793  CAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVE 972
            CAQ+YL+RVK+EEQRYQALK+HAEEKLD+AN EIAQVR KA+ E AA  A LRKEQ++V+
Sbjct: 2859 CAQEYLSRVKKEEQRYQALKVHAEEKLDRANAEIAQVRGKAQQEQAAHQASLRKEQLRVD 2918

Query: 973  SLERALQQKNQEIEELTKICDELIAKLGKT 1062
            +LER L+QKN+EIEELTKICDELIAK+GK+
Sbjct: 2919 ALERTLEQKNKEIEELTKICDELIAKMGKS 2948


>ref|NP_996743.1| transforming acidic coiled-coil-containing protein 2 isoform b [Homo
            sapiens].
          Length = 1094

 Score =  297 bits (760), Expect = 3e-80
 Identities = 149/210 (70%), Positives = 179/210 (85%)
 Frame = +1

Query: 433  GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 612
            G+   + D  + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 885  GLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 944

Query: 613  DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK 792
            DEQR    S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE LK+
Sbjct: 945  DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKR 1004

Query: 793  CAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVE 972
            CAQ+YL+RVK+EEQRYQALK+HAEEKLD+AN EIAQVR KA+ E AA  A LRKEQ++V+
Sbjct: 1005 CAQEYLSRVKKEEQRYQALKVHAEEKLDRANAEIAQVRGKAQQEQAAHQASLRKEQLRVD 1064

Query: 973  SLERALQQKNQEIEELTKICDELIAKLGKT 1062
            +LER L+QKN+EIEELTKICDELIAK+GK+
Sbjct: 1065 ALERTLEQKNKEIEELTKICDELIAKMGKS 1094


>ref|NP_996742.1| transforming acidic coiled-coil-containing protein 2 isoform c [Homo
            sapiens].
          Length = 996

 Score =  297 bits (760), Expect = 3e-80
 Identities = 149/210 (70%), Positives = 179/210 (85%)
 Frame = +1

Query: 433  GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 612
            G+   + D  + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 787  GLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 846

Query: 613  DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK 792
            DEQR    S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE LK+
Sbjct: 847  DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKR 906

Query: 793  CAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVE 972
            CAQ+YL+RVK+EEQRYQALK+HAEEKLD+AN EIAQVR KA+ E AA  A LRKEQ++V+
Sbjct: 907  CAQEYLSRVKKEEQRYQALKVHAEEKLDRANAEIAQVRGKAQQEQAAHQASLRKEQLRVD 966

Query: 973  SLERALQQKNQEIEELTKICDELIAKLGKT 1062
            +LER L+QKN+EIEELTKICDELIAK+GK+
Sbjct: 967  ALERTLEQKNKEIEELTKICDELIAKMGKS 996


>ref|NP_008928.1| transforming acidic coiled-coil-containing protein 2 isoform d [Homo
            sapiens].
          Length = 1026

 Score =  297 bits (760), Expect = 3e-80
 Identities = 149/210 (70%), Positives = 179/210 (85%)
 Frame = +1

Query: 433  GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 612
            G+   + D  + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 817  GLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 876

Query: 613  DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK 792
            DEQR    S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE LK+
Sbjct: 877  DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKR 936

Query: 793  CAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVE 972
            CAQ+YL+RVK+EEQRYQALK+HAEEKLD+AN EIAQVR KA+ E AA  A LRKEQ++V+
Sbjct: 937  CAQEYLSRVKKEEQRYQALKVHAEEKLDRANAEIAQVRGKAQQEQAAHQASLRKEQLRVD 996

Query: 973  SLERALQQKNQEIEELTKICDELIAKLGKT 1062
            +LER L+QKN+EIEELTKICDELIAK+GK+
Sbjct: 997  ALERTLEQKNKEIEELTKICDELIAKMGKS 1026


>ref|NP_006333.1| transforming acidic coiled-coil-containing protein 3 [Homo sapiens].
          Length = 838

 Score =  210 bits (535), Expect = 4e-54
 Identities = 114/238 (47%), Positives = 159/238 (66%), Gaps = 6/238 (2%)
 Frame = +1

Query: 364  GTLEAPMEKAPVSVACGGESPL------DGICLSESDKTAVLTLIREEIITKEIEANEWK 525
            G L+ P+   P  V   G  PL      D +  S+ D  AV+   +EE         E +
Sbjct: 607  GALDIPVPGPPPGVPAPGGPPLSTGPIVDLLQYSQKDLDAVVKATQEE-------NRELR 659

Query: 526  KKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVE 705
             + EE   + LE+ KI+  +E+ + Q +E+ Q+    S+   Q++  EK+Q   DLNS+E
Sbjct: 660  SRCEELHGKNLELGKIMDRFEEVVYQAMEEVQKQKELSKAEIQKVLKEKDQLTTDLNSME 719

Query: 706  RSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKAN 885
            +S SDLF+R+E  K V+EG++KNEE+LKKC +DYLAR+ QE QRYQALK HAEEKL  AN
Sbjct: 720  KSFSDLFKRFEKQKEVIEGYRKNEESLKKCVEDYLARITQEGQRYQALKAHAEEKLQLAN 779

Query: 886  EEIAQVRTKAKAESAALHAGLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGK 1059
            EEIAQVR+KA+AE+ AL A LRKEQM+++SLE+ ++QK +E EELT+ICD+LI+K+ K
Sbjct: 780  EEIAQVRSKAQAEALALQASLRKEQMRIQSLEKTVEQKTKENEELTRICDDLISKMEK 837


>ref|NP_001804.2| centromere-associated protein E [Homo sapiens].
          Length = 2701

 Score = 55.5 bits (132), Expect = 2e-07
 Identities = 45/212 (21%), Positives = 106/212 (50%), Gaps = 4/212 (1%)
 Frame = +1

Query: 418  ESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYE----ETRQEVLEMRKIVAEY 585
            +  +D +  S S+KTA +      I T+++E +  K + E       QE+L   K V+E 
Sbjct: 1248 QETIDELRRSVSEKTAQI------INTQDLEKSHTKLQEEIPVLHEEQELLPNVKEVSET 1301

Query: 586  EKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGF 765
            ++T+ ++    ++++     +  ++ ME+ +        +  +  L +  +NLK + E  
Sbjct: 1302 QETMNELELLTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEAL 1361

Query: 766  KKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHAG 945
            +   + LK+  ++ LA++ QE Q  Q   ++ +EK ++  + ++++      +SA L   
Sbjct: 1362 EVKHDQLKEHIRETLAKI-QESQSKQEQSLNMKEKDNETTKIVSEMEQFKPKDSALL--- 1417

Query: 946  LRKEQMKVESLERALQQKNQEIEELTKICDEL 1041
              + ++++  L + LQ+ + E++ + K  D+L
Sbjct: 1418 --RIEIEMLGLSKRLQESHDEMKSVAKEKDDL 1447


>ref|NP_003793.2| myosin-13 [Homo sapiens].
          Length = 1938

 Score = 52.8 bits (125), Expect = 1e-06
 Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 6/196 (3%)
 Frame = +1

Query: 493  ITKEIEA-NEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSME 669
            +   IEA ++ K   E T + V +    +   ++   Q+I D        Q    +LS  
Sbjct: 1235 MASNIEALSKSKSNIERTCRTVEDQFSEIKAKDEQQTQLIHDLNMQKARLQTQNGELSHR 1294

Query: 670  KEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDY-----LARVKQEEQ 834
             E+  + ++ + +S   L ++ E LK  +E   K + A+    Q       L R + EE+
Sbjct: 1295 VEEKESLISQLTKSKQALTQQLEELKRQMEEETKAKNAMAHALQSSRHDCDLLREQYEEE 1354

Query: 835  RYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVESLERALQQKNQEIE 1014
              Q  K   +  L KAN E+AQ RTK + ++       R E++  E  ++ L Q+ QE E
Sbjct: 1355 --QEAKAELQRALSKANSEVAQWRTKYETDAIQ-----RTEEL--EEAKKKLAQRLQEAE 1405

Query: 1015 ELTKICDELIAKLGKT 1062
            E T+  +   A L KT
Sbjct: 1406 ENTETANSKCASLEKT 1421


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 82,393,039
Number of extensions: 2095865
Number of successful extensions: 10416
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 10186
Number of HSP's successfully gapped: 27
Length of query: 774
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 664
Effective length of database: 14,671,124
Effective search space: 9741626336
Effective search space used: 9741626336
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001903
         (2322 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_955355.1| transforming acidic coiled-coil-containing prot...   534   e-151
Alignment   gi|NP_796063.3| transforming acidic coiled-coil-containing prot...   533   e-151
Alignment   gi|NP_996738.2| transforming acidic coiled-coil-containing prot...   294   2e-79
Alignment   gi|NP_067289.2| transforming acidic coiled-coil-containing prot...   294   2e-79
Alignment   gi|NP_001004468.1| transforming acidic coiled-coil-containing p...   294   2e-79
Alignment   gi|NP_001035525.1| transforming acidic coiled-coil-containing p...   186   7e-47
Alignment   gi|NP_082297.1| myosin-14 [Mus musculus].                             54   4e-07
Alignment   gi|NP_001139430.1| rootletin isoform 2 [Mus musculus].                54   4e-07
Alignment   gi|NP_742120.2| rootletin isoform 1 [Mus musculus].                   54   4e-07
Alignment   gi|NP_001093105.1| myosin-3 [Mus musculus].                           54   7e-07

>ref|NP_955355.1| transforming acidic coiled-coil-containing protein 1 short isoform
            [Mus musculus].
          Length = 368

 Score =  534 bits (1375), Expect = e-151
 Identities = 285/350 (81%), Positives = 306/350 (87%), Gaps = 7/350 (2%)
 Frame = +1

Query: 37   AALRAMGGAHSQS--PRGREPATERPPRPHENA----SGCKVKKYEAQSLALDGCSQDEG 198
            +A+R  G    ++  P G +P  E   +    +    SGCKVKKYEAQ L LD CSQDEG
Sbjct: 20   SAVRGSGAGEDEAGGPEG-DPEEEEDSQAETKSLSFRSGCKVKKYEAQPLDLDACSQDEG 78

Query: 199  AVISQISDISNRDGHATDEEKLASTT-CGQKPTGAEGKGMEKEMSLKMEKDGSTMPGTLE 375
            AVIS+IS+I NRDGHATDEEKLAST+ C QK  GA  KG+EKE   KMEK+   + G LE
Sbjct: 79   AVISKISEIPNRDGHATDEEKLASTSSCAQKSAGAGVKGIEKETCQKMEKEELAVHGLLE 138

Query: 376  APMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEV 555
            +  EKAPVSVACGGESPLDGICLSE+DKTAVLTLIREEIITKEIEANEWKKKYEETR+EV
Sbjct: 139  SSSEKAPVSVACGGESPLDGICLSEADKTAVLTLIREEIITKEIEANEWKKKYEETREEV 198

Query: 556  LEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRY 735
            LEMRKIVAEYEKTIAQMIEDEQR SM+SQKSFQQL+MEKEQALADLNSVERSLSDLFRRY
Sbjct: 199  LEMRKIVAEYEKTIAQMIEDEQRTSMSSQKSFQQLTMEKEQALADLNSVERSLSDLFRRY 258

Query: 736  ENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKA 915
            ENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALK+HAEEKLD+ANEEIAQVR+KA
Sbjct: 259  ENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKVHAEEKLDRANEEIAQVRSKA 318

Query: 916  KAESAALHAGLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD 1065
            KAESAALHAGLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD
Sbjct: 319  KAESAALHAGLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD 368


>ref|NP_796063.3| transforming acidic coiled-coil-containing protein 1 long isoform
            [Mus musculus].
          Length = 776

 Score =  533 bits (1373), Expect = e-151
 Identities = 278/313 (88%), Positives = 292/313 (93%), Gaps = 1/313 (0%)
 Frame = +1

Query: 130  SGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTT-CGQKPTGAEG 306
            SGCKVKKYEAQ L LD CSQDEGAVIS+IS+I NRDGHATDEEKLAST+ C QK  GA  
Sbjct: 464  SGCKVKKYEAQPLDLDACSQDEGAVISKISEIPNRDGHATDEEKLASTSSCAQKSAGAGV 523

Query: 307  KGMEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIRE 486
            KG+EKE   KMEK+   + G LE+  EKAPVSVACGGESPLDGICLSE+DKTAVLTLIRE
Sbjct: 524  KGIEKETCQKMEKEELAVHGLLESSSEKAPVSVACGGESPLDGICLSEADKTAVLTLIRE 583

Query: 487  EIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSM 666
            EIITKEIEANEWKKKYEETR+EVLEMRKIVAEYEKTIAQMIEDEQR SM+SQKSFQQL+M
Sbjct: 584  EIITKEIEANEWKKKYEETREEVLEMRKIVAEYEKTIAQMIEDEQRTSMSSQKSFQQLTM 643

Query: 667  EKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQA 846
            EKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQA
Sbjct: 644  EKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQA 703

Query: 847  LKIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVESLERALQQKNQEIEELTK 1026
            LK+HAEEKLD+ANEEIAQVR+KAKAESAALHAGLRKEQMKVESLERALQQKNQEIEELTK
Sbjct: 704  LKVHAEEKLDRANEEIAQVRSKAKAESAALHAGLRKEQMKVESLERALQQKNQEIEELTK 763

Query: 1027 ICDELIAKLGKTD 1065
            ICDELIAKLGKTD
Sbjct: 764  ICDELIAKLGKTD 776


>ref|NP_996738.2| transforming acidic coiled-coil-containing protein 2 isoform a [Mus
            musculus].
          Length = 1146

 Score =  294 bits (753), Expect = 2e-79
 Identities = 147/210 (70%), Positives = 178/210 (84%)
 Frame = +1

Query: 433  GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 612
            G+   + D  + L + R E+I KE E +EW+ KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 937  GLLFQQPDLDSALQVARAEVIAKEREVSEWRDKYEESRREVVEMRKIVAEYEKTIAQMIE 996

Query: 613  DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK 792
            DEQR    S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE LKK
Sbjct: 997  DEQREKSISHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKK 1056

Query: 793  CAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVE 972
            CAQ+YL+RVK+EEQRYQALK+HAEEKLD+AN EIAQVR KA+ E AA  A LRKEQ++V+
Sbjct: 1057 CAQEYLSRVKKEEQRYQALKVHAEEKLDRANAEIAQVRGKAQQEQAAYQASLRKEQLRVD 1116

Query: 973  SLERALQQKNQEIEELTKICDELIAKLGKT 1062
            +LER L+QKN+EIEELTKICDELIAK+GK+
Sbjct: 1117 ALERTLEQKNKEIEELTKICDELIAKMGKS 1146


>ref|NP_067289.2| transforming acidic coiled-coil-containing protein 2 isoform b [Mus
            musculus].
          Length = 1036

 Score =  294 bits (753), Expect = 2e-79
 Identities = 147/210 (70%), Positives = 178/210 (84%)
 Frame = +1

Query: 433  GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 612
            G+   + D  + L + R E+I KE E +EW+ KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 827  GLLFQQPDLDSALQVARAEVIAKEREVSEWRDKYEESRREVVEMRKIVAEYEKTIAQMIE 886

Query: 613  DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK 792
            DEQR    S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE LKK
Sbjct: 887  DEQREKSISHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKK 946

Query: 793  CAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVE 972
            CAQ+YL+RVK+EEQRYQALK+HAEEKLD+AN EIAQVR KA+ E AA  A LRKEQ++V+
Sbjct: 947  CAQEYLSRVKKEEQRYQALKVHAEEKLDRANAEIAQVRGKAQQEQAAYQASLRKEQLRVD 1006

Query: 973  SLERALQQKNQEIEELTKICDELIAKLGKT 1062
            +LER L+QKN+EIEELTKICDELIAK+GK+
Sbjct: 1007 ALERTLEQKNKEIEELTKICDELIAKMGKS 1036


>ref|NP_001004468.1| transforming acidic coiled-coil-containing protein 2 isoform c [Mus
            musculus].
          Length = 2879

 Score =  294 bits (753), Expect = 2e-79
 Identities = 147/210 (70%), Positives = 178/210 (84%)
 Frame = +1

Query: 433  GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 612
            G+   + D  + L + R E+I KE E +EW+ KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 2670 GLLFQQPDLDSALQVARAEVIAKEREVSEWRDKYEESRREVVEMRKIVAEYEKTIAQMIE 2729

Query: 613  DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK 792
            DEQR    S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE LKK
Sbjct: 2730 DEQREKSISHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKK 2789

Query: 793  CAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVE 972
            CAQ+YL+RVK+EEQRYQALK+HAEEKLD+AN EIAQVR KA+ E AA  A LRKEQ++V+
Sbjct: 2790 CAQEYLSRVKKEEQRYQALKVHAEEKLDRANAEIAQVRGKAQQEQAAYQASLRKEQLRVD 2849

Query: 973  SLERALQQKNQEIEELTKICDELIAKLGKT 1062
            +LER L+QKN+EIEELTKICDELIAK+GK+
Sbjct: 2850 ALERTLEQKNKEIEELTKICDELIAKMGKS 2879


>ref|NP_001035525.1| transforming acidic coiled-coil-containing protein 3 [Mus musculus].
          Length = 630

 Score =  186 bits (472), Expect = 7e-47
 Identities = 106/240 (44%), Positives = 156/240 (65%), Gaps = 8/240 (3%)
 Frame = +1

Query: 364  GTLEAPMEKAPVSVA-----CGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKK 528
            G L+ P+   P+ V         E  +D +  S+ D  AV+ ++++E +       E K 
Sbjct: 397  GDLDVPVSAPPLCVLEPRGLLPAEPIVDVLKYSQKDLDAVVNVMQQENL-------ELKS 449

Query: 529  KYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRA---SMTSQKSFQQLSMEKEQALADLNS 699
            KYE+   + LEM K V E+EK   + +E+ ++       ++   Q++  E++Q  ADLNS
Sbjct: 450  KYEDLNTKYLEMGKSVDEFEKIAYKSLEEAEKQRELKEIAEDKIQKVLKERDQLNADLNS 509

Query: 700  VERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDK 879
            +E+S SDLF+R+E  K V+EG++KNEE+LKK   + + ++++E QRYQALKIHAEEKL  
Sbjct: 510  MEKSFSDLFKRFEKRKEVIEGYQKNEESLKKYVGECIVKIEKEGQRYQALKIHAEEKLRL 569

Query: 880  ANEEIAQVRTKAKAESAALHAGLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGK 1059
            ANEEIAQV +KA+AE  AL A LRK QM+  SLE  L+QK +EI+ELT+ICD+LI+K+ K
Sbjct: 570  ANEEIAQVHSKAQAEVLALQASLRKAQMQNHSLEMTLEQKTKEIDELTRICDDLISKMEK 629


>ref|NP_082297.1| myosin-14 [Mus musculus].
          Length = 1992

 Score = 54.3 bits (129), Expect = 4e-07
 Identities = 73/323 (22%), Positives = 137/323 (42%), Gaps = 20/323 (6%)
 Frame = +1

Query: 139  KVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQKPTGAEGKGME 318
            K ++ E+Q   + G S D     S+ ++   R   A  E +  ST   +    AE K + 
Sbjct: 1266 KRRRLESQLQEVQGRSSDSERARSEAAEKLQR---AQAELESVSTALSE----AESKAIR 1318

Query: 319  KEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIIT 498
              +  ++    S +  T E   E+    +A G       +   E++   +   + EE++ 
Sbjct: 1319 --LGKELSSAESQLHDTQELLQEETRAKLALGSR-----VRALEAEAAGLREQMEEEVVA 1371

Query: 499  KE----------IEANEWKKKYEETRQEVL---EMRKIVAEYEKTIAQMIEDEQRASMTS 639
            +E           + +EW+++ EE    +    E R+  A   +T+ Q + ++  A    
Sbjct: 1372 RERAGRELQSTQAQLSEWRRRQEEEAAVLEAGEEARRRAAREAETLTQRLAEKTEAVERL 1431

Query: 640  QKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARV 819
            +++ ++L  E + A  DL   ++ LS L ++      +L      E+A    A +   R+
Sbjct: 1432 ERARRRLQQELDDATVDLGQQKQLLSTLEKKQRKFDQLLA----EEKAAVLRAVEDRERI 1487

Query: 820  KQE--EQRYQALKI-HAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVESLERAL 990
            + E  E+  +AL +  A E+  +A EE+ +     +AE  AL +        V  LERA 
Sbjct: 1488 EAEGREREARALSLTRALEEEQEAREELERQNRALRAELEALLSSKDDVGKNVHELERAR 1547

Query: 991  QQKNQEIEEL----TKICDELIA 1047
            +   Q   +L    T++ DEL A
Sbjct: 1548 KAAEQAASDLRTQVTELEDELTA 1570


>ref|NP_001139430.1| rootletin isoform 2 [Mus musculus].
          Length = 1845

 Score = 54.3 bits (129), Expect = 4e-07
 Identities = 61/270 (22%), Positives = 110/270 (40%), Gaps = 55/270 (20%)
 Frame = +1

Query: 415  GESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYE-- 588
            G SP  G+  + SD ++ LTLI   +  ++++  + + +YE +++ +  +RK +++ E  
Sbjct: 341  GRSPRRGLSPACSD-SSTLTLIHSALHKRQLQVQDMRGRYEASQELLGSVRKQLSDSEGE 399

Query: 589  ---------------KTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDL 723
                              AQ  ED QR +   + + + LS EK      L   ++   +L
Sbjct: 400  RRGLEEQLQRLRDQTAASAQAQEDAQREAQRLRSANELLSREKGNLTHSLQVTQQQAKEL 459

Query: 724  FRRYENLKGVLEGFKKNEEALKKCAQDYL---ARVKQEEQRYQALKIHAEEKLDKANEEI 894
             +  E L+   E  K+    L+   +D +   AR ++E +R        E K     +E+
Sbjct: 460  RQELEKLQAAQEELKRQHNQLEDAQEDSVQEGARARRELERSHRQLEQLEVKRSGLTKEL 519

Query: 895  AQVR------------------------TKAKAESAAL----------HAGLRKEQMKVE 972
             +VR                        TKA+A  A L           A LR    K+ 
Sbjct: 520  VEVREALSCAILQRDVLQTEKAEVAEALTKAEAGRAQLELSLTKLRAEEASLRDSLSKMS 579

Query: 973  SLERALQQKNQEIEEL-TKICDELIAKLGK 1059
            +L  +L Q   E+  L  ++ +E +A LG+
Sbjct: 580  ALNESLAQDKLELNRLIAQLEEEKVALLGR 609


>ref|NP_742120.2| rootletin isoform 1 [Mus musculus].
          Length = 2009

 Score = 54.3 bits (129), Expect = 4e-07
 Identities = 61/270 (22%), Positives = 110/270 (40%), Gaps = 55/270 (20%)
 Frame = +1

Query: 415  GESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYE-- 588
            G SP  G+  + SD ++ LTLI   +  ++++  + + +YE +++ +  +RK +++ E  
Sbjct: 505  GRSPRRGLSPACSD-SSTLTLIHSALHKRQLQVQDMRGRYEASQELLGSVRKQLSDSEGE 563

Query: 589  ---------------KTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDL 723
                              AQ  ED QR +   + + + LS EK      L   ++   +L
Sbjct: 564  RRGLEEQLQRLRDQTAASAQAQEDAQREAQRLRSANELLSREKGNLTHSLQVTQQQAKEL 623

Query: 724  FRRYENLKGVLEGFKKNEEALKKCAQDYL---ARVKQEEQRYQALKIHAEEKLDKANEEI 894
             +  E L+   E  K+    L+   +D +   AR ++E +R        E K     +E+
Sbjct: 624  RQELEKLQAAQEELKRQHNQLEDAQEDSVQEGARARRELERSHRQLEQLEVKRSGLTKEL 683

Query: 895  AQVR------------------------TKAKAESAAL----------HAGLRKEQMKVE 972
             +VR                        TKA+A  A L           A LR    K+ 
Sbjct: 684  VEVREALSCAILQRDVLQTEKAEVAEALTKAEAGRAQLELSLTKLRAEEASLRDSLSKMS 743

Query: 973  SLERALQQKNQEIEEL-TKICDELIAKLGK 1059
            +L  +L Q   E+  L  ++ +E +A LG+
Sbjct: 744  ALNESLAQDKLELNRLIAQLEEEKVALLGR 773


>ref|NP_001093105.1| myosin-3 [Mus musculus].
          Length = 1940

 Score = 53.5 bits (127), Expect = 7e-07
 Identities = 61/211 (28%), Positives = 97/211 (45%), Gaps = 24/211 (11%)
 Frame = +1

Query: 502  EIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDE-----------QRA--SMTSQ 642
            E E +E+K + ++    V  + K  A  EK I + +ED+           QR+   +T+Q
Sbjct: 1219 EKEKSEFKLEIDDLSSSVESVSKSKANLEK-ICRTLEDQLSEARGKNEEMQRSLSELTTQ 1277

Query: 643  KSFQQ-----LSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQ-- 801
            KS  Q     LS + E+  + ++ + RS     ++ E LK  LE   K + AL    Q  
Sbjct: 1278 KSRLQTEAGELSRQLEEKESIVSQLSRSKQAFTQQIEELKRQLEEENKAKNALAHALQSS 1337

Query: 802  ----DYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKV 969
                D L    +EEQ  +A     +  L KAN E+AQ RTK + ++       R E++  
Sbjct: 1338 RHDCDLLREQYEEEQEGKA---ELQRALSKANSEVAQWRTKYETDAIQ-----RTEEL-- 1387

Query: 970  ESLERALQQKNQEIEELTKICDELIAKLGKT 1062
            E  ++ L Q+ Q+ EE  +  +   A L KT
Sbjct: 1388 EEAKKKLAQRLQDSEEQVEAVNAKCASLEKT 1418


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 69,811,730
Number of extensions: 1755965
Number of successful extensions: 8061
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 7939
Number of HSP's successfully gapped: 15
Length of query: 774
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 665
Effective length of database: 12,343,635
Effective search space: 8208517275
Effective search space used: 8208517275
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001903
         (2322 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003359527.1| PREDICTED: transforming acidic coiled-coil-c...   451   e-126
Alignment   gi|XP_003128852.1| PREDICTED: transforming acidic coiled-coil-c...   183   4e-46
Alignment   gi|XP_003134701.1| PREDICTED: caldesmon [Sus scrofa].                 54   4e-07
Alignment   gi|XP_003132042.1| PREDICTED: myosin-3 [Sus scrofa].                  54   4e-07
Alignment   gi|XP_001926390.1| PREDICTED: early endosome antigen 1 [Sus scr...    54   5e-07
Alignment   gi|XP_001926507.1| PREDICTED: ras association domain-containing...    51   2e-06
Alignment   gi|XP_003356719.1| PREDICTED: S phase cyclin A-associated prote...    50   5e-06
Alignment   gi|XP_001928242.1| PREDICTED: centrosomal protein of 290 kDa-li...    50   5e-06

>ref|XP_003359527.1| PREDICTED: transforming acidic coiled-coil-containing protein 1-like
            [Sus scrofa].
          Length = 254

 Score =  451 bits (1159), Expect = e-126
 Identities = 237/251 (94%), Positives = 242/251 (96%)
 Frame = +1

Query: 313  MEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEI 492
            ++K M+ ++  D     GTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEI
Sbjct: 4    VKKLMTRRVTCDLFRPQGTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEI 63

Query: 493  ITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEK 672
            ITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEK
Sbjct: 64   ITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEK 123

Query: 673  EQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALK 852
            EQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALK
Sbjct: 124  EQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALK 183

Query: 853  IHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVESLERALQQKNQEIEELTKIC 1032
            IHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVESLERALQQKNQEIEELTKIC
Sbjct: 184  IHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVESLERALQQKNQEIEELTKIC 243

Query: 1033 DELIAKLGKTD 1065
            DELIAKLGKTD
Sbjct: 244  DELIAKLGKTD 254


>ref|XP_003128852.1| PREDICTED: transforming acidic coiled-coil-containing protein 3-like
            [Sus scrofa].
          Length = 740

 Score =  183 bits (464), Expect = 4e-46
 Identities = 90/182 (49%), Positives = 136/182 (74%)
 Frame = +1

Query: 508  EANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALA 687
            E  E + +  E +++VLEM KI+  +E+T+ Q +E+ Q+    ++   Q+   E+E    
Sbjct: 556  ENAELRSRCTELQEKVLEMGKIMDRFEETVYQAMEEAQKQKELARVEVQKALQEQEHVSG 615

Query: 688  DLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEE 867
            DL SVE+S S+LFRR+E  K V+EG++ NE +LKKC ++Y+ R+++E QRYQALK HAEE
Sbjct: 616  DLRSVEKSFSELFRRFEKQKEVIEGYRTNEASLKKCVEEYMERLEKEGQRYQALKAHAEE 675

Query: 868  KLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVESLERALQQKNQEIEELTKICDELIA 1047
            KL  A+EE+AQVR++A+AE  AL A L+KEQM+V+SLE+A++QK +E +ELT+ICD+LI+
Sbjct: 676  KLQLASEEMAQVRSRAQAEVLALQAVLKKEQMRVQSLEKAMEQKTKENDELTRICDDLIS 735

Query: 1048 KL 1053
            K+
Sbjct: 736  KM 737


>ref|XP_003134701.1| PREDICTED: caldesmon [Sus scrofa].
          Length = 871

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 79/347 (22%), Positives = 143/347 (41%), Gaps = 18/347 (5%)
 Frame = +1

Query: 52   MGGAHSQSPRG----REPATERPPRPHENASGCKVKKYEAQSLALDGCSQDEGAVISQIS 219
            +GG+ SQ  R      + A +R     E A+  + ++   + L      +  G V  Q+ 
Sbjct: 78   LGGSGSQGRRSLAALSQIAYQRNDDDEEEAARERRRRARQERLRQKQEEESLGQVTDQVE 137

Query: 220  DISNRDGHATDEEKLASTTCGQKPTGAEGKGMEKEMSLKMEKDGSTMPGTLEAPMEKAPV 399
               N      DE+   +TT  Q     E   +E+ ++ + E+    +   LE   E  P 
Sbjct: 138  --VNTQNSVPDEQVKTTTTNTQMEADDEAALLER-LARREERRQKRLQEALERQKEFDPT 194

Query: 400  SVACGGESPLDGICLSES-DKTAV-----------LTLIREEIITKEIEANEWKKKYEET 543
                    P   +  S + D+TA              +   E++TK  + N+W+   E+ 
Sbjct: 195  IADASSSPPSRRMQNSTAEDETAEKDEKSESRQERYEIEETEVVTKSYQKNDWRDAEEQK 254

Query: 544  RQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDL 723
            ++   E  K   E EK     IE+ Q   +  +K+ +    ++E  +A L + + S  + 
Sbjct: 255  KE---EKEKEEEEEEKPNQGSIEENQVEMVVEEKTAE---TQEETGMA-LKNGQISADEP 307

Query: 724  FRRYENLKGVLE--GFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIA 897
                E  KG  E    +K EE  ++ A+   AR++ EE+  + +K   ++K+    EE A
Sbjct: 308  RTEEEREKGSHEMPHNEKIEEEARERAEAERARLEAEER--ERMKAEQDQKI---AEEKA 362

Query: 898  QVRTKAKAESAALHAGLRKEQMKVESLERALQQKNQEIEELTKICDE 1038
            +   + KA +        +E+ ++E  ER   Q+ Q IEE  +   E
Sbjct: 363  RREAEEKAAAQERERRAAEERQRIEEEERRAAQERQRIEEERRAAQE 409


>ref|XP_003132042.1| PREDICTED: myosin-3 [Sus scrofa].
          Length = 1940

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 59/210 (28%), Positives = 94/210 (44%), Gaps = 23/210 (10%)
 Frame = +1

Query: 502  EIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDE-------------QRASMTSQ 642
            E E +E+K + ++    V  + K  A  EK I + +ED+               + +T Q
Sbjct: 1219 EKEKSEFKLELDDLAGNVESVSKAKANLEK-ICRTLEDQLSEARGKNEEIQRSMSELTMQ 1277

Query: 643  KSFQQ-----LSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDY 807
            KS  Q     LS + E+  + ++ + RS     ++ E LK  LE   K + AL    Q  
Sbjct: 1278 KSRLQTEAGELSRQLEEKESTVSQLSRSKQAFTQQIEELKRQLEEESKAKNALAHALQSA 1337

Query: 808  -----LARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVE 972
                 L R + EE+  Q  K   +  L KAN E+AQ RTK + ++       R E++  E
Sbjct: 1338 RHDCDLLREQYEEE--QEAKAELQRALSKANSEVAQWRTKYETDAIQ-----RTEEL--E 1388

Query: 973  SLERALQQKNQEIEELTKICDELIAKLGKT 1062
              ++ L Q+ Q+ EE  +  +   A L KT
Sbjct: 1389 EAKKKLAQRLQDSEEQVEAVNAKCASLEKT 1418


>ref|XP_001926390.1| PREDICTED: early endosome antigen 1 [Sus scrofa].
          Length = 1410

 Score = 53.5 bits (127), Expect = 5e-07
 Identities = 43/193 (22%), Positives = 92/193 (47%), Gaps = 20/193 (10%)
 Frame = +1

Query: 499  KEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKE- 675
            +++ + +   K ++     L++ ++  E ++ +A   E + +   T Q+  +Q ++++  
Sbjct: 440  RQLSSEKLMDKEQQVADLQLKLSRLEEELKEKVANSTELQHQLDKTKQQHQEQQALQQST 499

Query: 676  -----QALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRY 840
                 +A  DL  V R + D  ++ +NL+ +L+  K+N   L+K  +D  A+++  E   
Sbjct: 500  TAKLREAQNDLEQVLRQIGDKDQKIQNLEALLQKSKENISLLEKEREDLYAKIQAGEGET 559

Query: 841  QALKIHAEEKLDKANEEIAQVRTKAKAESAA-------LH-------AGLRKEQMKVESL 978
              L    +EK     E++ Q+  K K +S +       LH       A LR  Q +V SL
Sbjct: 560  AVLN-QLQEKNHILQEQVTQLTEKLKNQSESHKQAQENLHDQVQEQKAHLRAAQDRVLSL 618

Query: 979  ERALQQKNQEIEE 1017
            E ++ + + ++ E
Sbjct: 619  EASISELSSQLNE 631


>ref|XP_001926507.1| PREDICTED: ras association domain-containing protein 8 [Sus scrofa].
          Length = 419

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 51/198 (25%), Positives = 87/198 (43%), Gaps = 8/198 (4%)
 Frame = +1

Query: 457  KTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMT 636
            +T  L  I +E+ + EIE   W++KY    +E     +IV   +K     +E E+     
Sbjct: 173  QTEKLQSIEKELESNEIEIRFWEQKYNSNLEE-----EIVRLEQKIKRNDVEIEEEEFWE 227

Query: 637  SQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLAR 816
            ++   +Q   E E+ L D                 L+ + +   + E  LK    DYLA+
Sbjct: 228  NELQIEQ---ENEKQLKD----------------QLQEIRQKITECESKLK----DYLAQ 264

Query: 817  VKQEEQRYQALKIHAEEKLDKANEE-----IAQVRTKAKAE---SAALHAGLRKEQMKVE 972
            ++  E   +A K+  E +  + NEE     I +VR +   +   S  L  G++  +  + 
Sbjct: 265  IQTMESGLEAEKLQREVQEAQVNEEEVKGKIGKVRGEIDIQGQQSLRLENGIKAVERSLG 324

Query: 973  SLERALQQKNQEIEELTK 1026
               + LQ K QE+E+LTK
Sbjct: 325  QATKRLQDKEQELEQLTK 342


>ref|XP_003356719.1| PREDICTED: S phase cyclin A-associated protein in the endoplasmic
            reticulum, partial [Sus scrofa].
          Length = 1287

 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 38/189 (20%), Positives = 93/189 (49%), Gaps = 10/189 (5%)
 Frame = +1

Query: 472  TLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEK------TIAQMIEDEQRASM 633
            TL  ++++ +E +  +WK++  + R+ ++E + + AE+++       + +  E+E + + 
Sbjct: 568  TLKLQKLLEREKDVRKWKEELLDQRRRMMEEKLLHAEFKREVQLQAIVKKAQEEEAKVNE 627

Query: 634  TSQKSFQQLSMEKEQALADLNSVERSLSDL----FRRYENLKGVLEGFKKNEEALKKCAQ 801
             +  +  +   ++   L+ L   E+ L++L     RR E  +   E  ++ + AL+   Q
Sbjct: 628  IAFINTLEAQNKRHDVLSKLKEYEQRLNELQEERQRRQEEKQARDEAVQERKRALEAERQ 687

Query: 802  DYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVESLE 981
              +  +  + +  +A      ++ +KA E+ A+ R + + E  A     ++E M  E L+
Sbjct: 688  ARVEELLMKRKEQEARIEQQRQEKEKAREDAARERARDREERLAALTAAQQEAM--EELQ 745

Query: 982  RALQQKNQE 1008
            + +Q K+ E
Sbjct: 746  KKIQLKHDE 754


>ref|XP_001928242.1| PREDICTED: centrosomal protein of 290 kDa-like [Sus scrofa].
          Length = 2481

 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 67/326 (20%), Positives = 131/326 (40%), Gaps = 17/326 (5%)
 Frame = +1

Query: 139  KVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQKPTGAEGKGME 318
            K+K++E   L L    +DE   I   ++I +  GH    +K             E + ++
Sbjct: 1662 KIKEFENMKLRLQENHEDEVKKIK--AEIEDLRGHLAQSQK-------------ESQRLK 1706

Query: 319  KEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEII- 495
             E+  + E +      T+   +E+    +A   E     +  +  +  A +T   EE I 
Sbjct: 1707 SELQAQKEANSRAPTTTMRNLVERLKSQLALK-EKQQKALSRALLELRAEMTAAAEERII 1765

Query: 496  --TKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSME 669
              T + EAN             L +++IV  + K +   +ED     +  ++S +  S  
Sbjct: 1766 SATSQKEAN-------------LNVQQIVDRHTKELKSQVEDLSENILKLKESLKT-SKN 1811

Query: 670  KEQALAD-LNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK-------------CAQDY 807
            +E +L D LN +   L    + Y+ +    +G  +  + LK+                + 
Sbjct: 1812 RENSLTDNLNDLTNELQKKQKAYDKMLREKDGIDQENDELKRQIKRLTSGLQGKPLIDNK 1871

Query: 808  LARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVESLERA 987
             + +++ +++ + L+   E+K D    E+  V+ K+  E        +K Q K+E +   
Sbjct: 1872 QSLIEELQKKIKKLESQLEKKADGV--EVKPVKEKSAREELIRWEEGKKWQTKIEGIRNK 1929

Query: 988  LQQKNQEIEELTKICDELIAKLGKTD 1065
            L++K  E+  LTK  + L     K D
Sbjct: 1930 LKEKEGEVCILTKQLNTLKDLFAKAD 1955


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 53,450,143
Number of extensions: 1591329
Number of successful extensions: 6403
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 6323
Number of HSP's successfully gapped: 8
Length of query: 774
Length of database: 11,343,932
Length adjustment: 107
Effective length of query: 667
Effective length of database: 8,679,953
Effective search space: 5789528651
Effective search space used: 5789528651
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001903
         (2322 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr15                                                         969   0.0  
Sscrofa_Chr14                                                          72   2e-09

>Sscrofa_Chr15 
||          Length = 157681621

 Score =  969 bits (489), Expect = 0.0
 Identities = 536/548 (97%), Gaps = 3/548 (0%)
 Strand = Plus / Minus

                                                                            
Query: 1724     gtgtttatttgtgctgctgggtcttctcccctaaagcatagtcagataagaccatctcta 1783
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54864721 gtgtttatttgtgctgctgggtcttctcccctaaagcatagtcagataagaccatctcta 54864662

                                                                            
Query: 1784     gagaaaagcgtgtttccataaatgtaaaaccctattttgaaacagagtcctggctcagaa 1843
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54864661 gagaaaagcgtgtttccataaatgtaaaaccctattttgaaacagagtcctggctcagaa 54864602

                                                                            
Query: 1844     ggctaacttcagaatttgggggttggagctgtgaggccctgagacttggtacctggtgtg 1903
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54864601 ggctaacttcagaatttgggggttggagctgtgaggccctgagacttggtacctggtgtg 54864542

                                                                            
Query: 1904     acttgtcacctcagactcaggtgacatgttgagggagcctgttggcccacatgtcctgtc 1963
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54864541 acttgtcacctcagactcaggtgacatgttgagggagcctgttggcccacatgtcctgtc 54864482

                                                                            
Query: 1964     accccagtactgggacgctcctcagcctggatgtgtagcccctttggggttagacggcca 2023
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54864481 accccagtactgggacgctcctcagcctggatgtgtagcccctttggggttagacggcca 54864422

                                                                            
Query: 2024     agccagagtgactggctttctggaccgtggttccctcacagctggggtctggcaagtctg 2083
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54864421 agccagagtgactggctttctggaccgtggttccctcacagctggggtctggcaagtctg 54864362

                                                                            
Query: 2084     tcctggagccatctgtctccttttgttgctacaaaatcaacattcactctctctttatat 2143
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54864361 tcctggagccatctgtctccttttgttgctacaaaatcaacattcactctctctttatat 54864302

                                                                            
Query: 2144     ttctatttgaaatgggcaaagaaaacctcctcaattaaagtttagatggatctgtctaat 2203
                ||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||| ||
Sbjct: 54864301 ttctatttgaaataggcaaagaaaacctcctcatttaaggtttagatggatctgtcttat 54864242

                                                                            
Query: 2204     gacccccctagcatttat-aggtg-agccatggntggatttttgcaaatgtgaag-atta 2260
                |||||| |||||| |||| ||||| ||| |||| ||||||||||||||||||| | ||||
Sbjct: 54864241 gaccccactagcaattatgaggtgaagcaatggttggatttttgcaaatgtgatgcatta 54864182

                        
Query: 2261     ttcttcag 2268
                ||||||||
Sbjct: 54864181 ttcttcag 54864174



 Score =  684 bits (345), Expect = 0.0
 Identities = 365/375 (97%)
 Strand = Plus / Minus

                                                                            
Query: 1201     cttcacgaaagcacatgcctactgctgcctgtcccgctttgcttttgaagcaacagcccg 1260
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54865244 cttcacgaaagcacatgcctactgctgcctgtcccgctttgcttttgaagcaacagcccg 54865185

                                                                            
Query: 1261     gagggagctctggagtttgcacaaccaccaaaggaggggctcgcctggccatcccgtctc 1320
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54865184 gagggagctctggagtttgcacaaccaccaaaggaggggctcgcctggccatcccgtctc 54865125

                                                                            
Query: 1321     ggttagacgggctgccaaggccactgggagttctccatctttagttggatttaaagttgt 1380
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54865124 ggttagacgggctgccaaggccactgggagttctccatctttagttggatttaaagttgt 54865065

                                                                            
Query: 1381     ctttactttccccaagtgcattcagtttatgagtttgtggccacctttgggaccctctcc 1440
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54865064 ctttactttccccaagtgcattcagtttatgagtttgtggccacctttgggaccctctcc 54865005

                                                                            
Query: 1441     tgtccaccacctgannnnnnnnnnaattcatcttttaaatttcattctcagtatgagtgg 1500
                ||||||||||||||          ||||||||||||||||||||||||||||||||||||
Sbjct: 54865004 tgtccaccacctgattttttttttaattcatcttttaaatttcattctcagtatgagtgg 54864945

                                                                            
Query: 1501     ttttatttgaggagataaattggcttcttgttacttccagcttataggcaagaagggact 1560
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54864944 ttttatttgaggagataaattggcttcttgttacttccagcttataggcaagaagggact 54864885

                               
Query: 1561     ctgatacccatttat 1575
                |||||||||||||||
Sbjct: 54864884 ctgatacccatttat 54864870



 Score =  325 bits (164), Expect = 6e-86
 Identities = 164/164 (100%)
 Strand = Plus / Minus

                                                                            
Query: 998      agaaccaagaaatcgaagaactgacgaaaatctgtgatgagctgattgcaaagctgggaa 1057
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54865446 agaaccaagaaatcgaagaactgacgaaaatctgtgatgagctgattgcaaagctgggaa 54865387

                                                                            
Query: 1058     agacagactgagtaccccggttagctcagcagatctgcatttggctgcttctctcgtgac 1117
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54865386 agacagactgagtaccccggttagctcagcagatctgcatttggctgcttctctcgtgac 54865327

                                                            
Query: 1118     catgattatcttgccttatccaggaataattgcccctttgcaga 1161
                ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54865326 catgattatcttgccttatccaggaataattgcccctttgcaga 54865283



 Score =  321 bits (162), Expect = 1e-84
 Identities = 162/162 (100%)
 Strand = Plus / Minus

                                                                            
Query: 610      gaagatgaacagagggcgagtatgacctcccagaagagcttccagcagctgagcatggag 669
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54871683 gaagatgaacagagggcgagtatgacctcccagaagagcttccagcagctgagcatggag 54871624

                                                                            
Query: 670      aaggagcaggcgctggccgacctcaactccgtggagaggtccctctccgacctcttcagg 729
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54871623 aaggagcaggcgctggccgacctcaactccgtggagaggtccctctccgacctcttcagg 54871564

                                                          
Query: 730      cgatatgagaacctgaaaggcgtcctggaggggttcaagaag 771
                ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54871563 cgatatgagaacctgaaaggcgtcctggaggggttcaagaag 54871522



 Score =  256 bits (129), Expect = 5e-65
 Identities = 129/129 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1        ggcgaaccgcggagcaaggacaggcgcagccggagcgccgcgctccgagccatgggaggc 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55008706 ggcgaaccgcggagcaaggacaggcgcagccggagcgccgcgctccgagccatgggaggc 55008765

                                                                            
Query: 61       gcccactctcagagcccgaggggccgggagccggccacggaaaggcccccgagaccccat 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55008766 gcccactctcagagcccgaggggccgggagccggccacggaaaggcccccgagaccccat 55008825

                         
Query: 121      gagaacgcg 129
                |||||||||
Sbjct: 55008826 gagaacgcg 55008834



 Score =  248 bits (125), Expect = 1e-62
 Identities = 125/125 (100%)
 Strand = Plus / Plus

                                                                            
Query: 187      caggatgaaggagcagtgatctcccagatttctgacatttccaacagggatggccacgca 246
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55069303 caggatgaaggagcagtgatctcccagatttctgacatttccaacagggatggccacgca 55069362

                                                                            
Query: 247      acagatgaggagaagctggcgtccacgacctgcggtcagaaacccaccggggccgagggg 306
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55069363 acagatgaggagaagctggcgtccacgacctgcggtcagaaacccaccggggccgagggg 55069422

                     
Query: 307      aaagg 311
                |||||
Sbjct: 55069423 aaagg 55069427



 Score =  240 bits (121), Expect = 3e-60
 Identities = 121/121 (100%)
 Strand = Plus / Minus

                                                                            
Query: 879      agccaatgaagagattgctcaggttcgaacaaaagccaaggctgagagcgctgctctgca 938
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54866935 agccaatgaagagattgctcaggttcgaacaaaagccaaggctgagagcgctgctctgca 54866876

                                                                            
Query: 939      tgcggggctccggaaagagcagatgaaggtggagtccctggagagggccctgcagcagaa 998
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54866875 tgcggggctccggaaagagcagatgaaggtggagtccctggagagggccctgcagcagaa 54866816

                 
Query: 999      g 999
                |
Sbjct: 54866815 g 54866815



 Score =  232 bits (117), Expect = 7e-58
 Identities = 117/117 (100%)
 Strand = Plus / Plus

                                                                            
Query: 364      ggaaccttggaggccccgatggagaaggctcctgtgtccgtggcctgcggaggggagagc 423
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55079996 ggaaccttggaggccccgatggagaaggctcctgtgtccgtggcctgcggaggggagagc 55080055

                                                                         
Query: 424      cccctggacggcatctgcctcagtgaatcagacaagaccgccgtgctcaccctgatc 480
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55080056 cccctggacggcatctgcctcagtgaatcagacaagaccgccgtgctcaccctgatc 55080112



 Score =  216 bits (109), Expect = 4e-53
 Identities = 109/109 (100%)
 Strand = Plus / Minus

                                                                            
Query: 770      agaatgaagaagccttgaaaaaatgtgctcaggattacttagccagagttaaacaagagg 829
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54871012 agaatgaagaagccttgaaaaaatgtgctcaggattacttagccagagttaaacaagagg 54870953

                                                                 
Query: 830      agcagcggtaccaggccctgaaaatccatgcggaagaaaaactagacaa 878
                |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54870952 agcagcggtaccaggccctgaaaatccatgcggaagaaaaactagacaa 54870904



 Score =  159 bits (80), Expect = 8e-36
 Identities = 80/80 (100%)
 Strand = Plus / Minus

                                                                            
Query: 488      agataatcactaaagagattgaagcaaatgaatggaagaaaaaatatgaagaaacccgac 547
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54875357 agataatcactaaagagattgaagcaaatgaatggaagaaaaaatatgaagaaacccgac 54875298

                                    
Query: 548      aagaagtcttggagatgagg 567
                ||||||||||||||||||||
Sbjct: 54875297 aagaagtcttggagatgagg 54875278



 Score =  115 bits (58), Expect = 1e-22
 Identities = 61/62 (98%)
 Strand = Plus / Plus

                                                                            
Query: 129      gagtggctgtaaggtgaagaaatatgaagcccagtctcttgctttggatgggtgttctca 188
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 55066576 gagtggctgtaaggtgaagaaatatgaagcccagtctcttgctttggatgggtgttcgca 55066635

                  
Query: 189      gg 190
                ||
Sbjct: 55066636 gg 55066637



 Score =  111 bits (56), Expect = 2e-21
 Identities = 56/56 (100%)
 Strand = Plus / Plus

                                                                        
Query: 309      aggcatggagaaagagatgagcctgaagatggagaaggatggatccaccatgcccg 364
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55072342 aggcatggagaaagagatgagcctgaagatggagaaggatggatccaccatgcccg 55072397



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 46/46 (100%)
 Strand = Plus / Minus

                                                              
Query: 565      aggaaaattgtggccgagtatgagaagaccattgcccaaatgatcg 610
                ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54873231 aggaaaattgtggccgagtatgagaagaccattgcccaaatgatcg 54873186


>Sscrofa_Chr14 
||          Length = 153851969

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 42/44 (95%)
 Strand = Plus / Plus

                                                             
Query: 565       aggaaaattgtggccgagtatgagaagaccattgcccaaatgat 608
                 |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 143120522 aggaaaatagtggccgagtatgagaagaccatcgcccaaatgat 143120565



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 92/112 (82%)
 Strand = Plus / Plus

                                                                             
Query: 650       tccagcagctgagcatggagaaggagcaggcgctggccgacctcaactccgtggagaggt 709
                 |||||||||||  | |||||||||| || || ||||||||||| ||||| ||||||| ||
Sbjct: 143126946 tccagcagctggtcctggagaaggaacaagccctggccgacctgaactcagtggagaagt 143127005

                                                                     
Query: 710       ccctctccgacctcttcaggcgatatgagaacctgaaaggcgtcctggaggg 761
                 | ||  |||| ||||||||| |||| |||||  |||| |  |||||||||||
Sbjct: 143127006 ctctggccgatctcttcaggagatacgagaagatgaaggaggtcctggaggg 143127057


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 66,478,885
Number of extensions: 447
Number of successful extensions: 447
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 446
Number of HSP's successfully gapped: 16
Length of query: 2322
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2300
Effective length of database: 2,808,408,574
Effective search space: 6459339720200
Effective search space used: 6459339720200
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)