Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001903
(2322 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002698763.1| PREDICTED: transforming, acidic coiled-coil ... 552 e-157
Alignment gi|XP_583551.3| PREDICTED: transforming, acidic coiled-coil con... 552 e-157
Alignment gi|XP_002703282.1| PREDICTED: transforming, acidic coiled-coil ... 299 8e-81
Alignment gi|NP_001093775.1| transforming, acidic coiled-coil containing ... 182 1e-45
Alignment gi|XP_002696444.1| PREDICTED: retinoic acid induced 14-like [Bo... 59 2e-08
Alignment gi|XP_604226.3| PREDICTED: retinoic acid induced 14-like, parti... 59 2e-08
Alignment gi|XP_002687260.1| PREDICTED: Early endosome antigen 1-like [Bo... 55 4e-07
Alignment gi|XP_594411.5| PREDICTED: early endosome antigen 1, 162kD [Bos... 55 4e-07
Alignment gi|NP_001095305.1| myosin-3 [Bos taurus]. 53 1e-06
Alignment gi|XP_002686286.1| PREDICTED: hypothetical protein [Bos taurus]. 52 2e-06
>ref|XP_002698763.1| PREDICTED: transforming, acidic coiled-coil containing protein 1 [Bos
taurus].
Length = 742
Score = 552 bits (1422), Expect = e-157
Identities = 294/341 (86%), Positives = 301/341 (88%), Gaps = 29/341 (8%)
Frame = +1
Query: 130 SGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQKPTGAEGK 309
SGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST+ QKPTGAEGK
Sbjct: 402 SGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTSSVQKPTGAEGK 461
Query: 310 G-----------------------------MEKEMSLKMEKDGSTMPGTLEAPMEKAPVS 402
G EK+ KMEKDGST+P LE+P+EK PVS
Sbjct: 462 GEPEDDLEYFECSNVPVSAINHAFSSSEAGSEKDPCQKMEKDGSTVPALLESPVEKTPVS 521
Query: 403 VACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAE 582
VACG ESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAE
Sbjct: 522 VACGVESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAE 581
Query: 583 YEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEG 762
YEKTIAQMIEDEQR SM+SQKSFQQL+MEKEQALADLNSVERSLSDLFRRYENLKGVLEG
Sbjct: 582 YEKTIAQMIEDEQRTSMSSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYENLKGVLEG 641
Query: 763 FKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHA 942
FKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHA
Sbjct: 642 FKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHA 701
Query: 943 GLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD 1065
GLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD
Sbjct: 702 GLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD 742
>ref|XP_583551.3| PREDICTED: transforming, acidic coiled-coil containing protein 1 [Bos
taurus].
Length = 666
Score = 552 bits (1422), Expect = e-157
Identities = 294/341 (86%), Positives = 301/341 (88%), Gaps = 29/341 (8%)
Frame = +1
Query: 130 SGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQKPTGAEGK 309
SGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST+ QKPTGAEGK
Sbjct: 326 SGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTSSVQKPTGAEGK 385
Query: 310 G-----------------------------MEKEMSLKMEKDGSTMPGTLEAPMEKAPVS 402
G EK+ KMEKDGST+P LE+P+EK PVS
Sbjct: 386 GEPEDDLEYFECSNVPVSAINHAFSSSEAGSEKDPCQKMEKDGSTVPALLESPVEKTPVS 445
Query: 403 VACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAE 582
VACG ESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAE
Sbjct: 446 VACGVESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAE 505
Query: 583 YEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEG 762
YEKTIAQMIEDEQR SM+SQKSFQQL+MEKEQALADLNSVERSLSDLFRRYENLKGVLEG
Sbjct: 506 YEKTIAQMIEDEQRTSMSSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYENLKGVLEG 565
Query: 763 FKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHA 942
FKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHA
Sbjct: 566 FKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHA 625
Query: 943 GLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD 1065
GLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD
Sbjct: 626 GLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD 666
>ref|XP_002703282.1| PREDICTED: transforming, acidic coiled-coil containing protein 2 [Bos
taurus].
Length = 2893
Score = 299 bits (765), Expect = 8e-81
Identities = 150/210 (71%), Positives = 179/210 (85%)
Frame = +1
Query: 433 GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 612
G+ + D + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 2684 GLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 2743
Query: 613 DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK 792
DEQR S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE LKK
Sbjct: 2744 DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKK 2803
Query: 793 CAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVE 972
CAQ+YL+RVK+EEQRYQALK+HAEEKLD+AN EIAQVR KA+ E AA A LRKEQ++V+
Sbjct: 2804 CAQEYLSRVKKEEQRYQALKVHAEEKLDRANAEIAQVRGKAQQEQAAYQASLRKEQLRVD 2863
Query: 973 SLERALQQKNQEIEELTKICDELIAKLGKT 1062
+LER L+QKN+EIEELTKICDELIAK+GK+
Sbjct: 2864 ALERTLEQKNKEIEELTKICDELIAKMGKS 2893
>ref|NP_001093775.1| transforming, acidic coiled-coil containing protein 3 [Bos taurus].
Length = 810
Score = 182 bits (462), Expect = 1e-45
Identities = 88/170 (51%), Positives = 132/170 (77%)
Frame = +1
Query: 544 RQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDL 723
++ +LEM KI+ +E T+ Q++E+ Q+ ++ Q++ EK Q ADL+S+E+S SDL
Sbjct: 638 QERLLEMGKIMDSFEGTVYQVMEESQKQKELTKAEMQKVLKEKAQLTADLHSMEKSFSDL 697
Query: 724 FRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQV 903
F+R+E K V+EG++ NEE+LKKC +DY+ RV++E Q+YQALK AEEKL +A+EEIAQV
Sbjct: 698 FKRFEKQKEVIEGYRTNEESLKKCVEDYIERVEKEAQKYQALKAQAEEKLRQASEEIAQV 757
Query: 904 RTKAKAESAALHAGLRKEQMKVESLERALQQKNQEIEELTKICDELIAKL 1053
R+KA+ ++ AL A LRKEQM+V SLE+ ++QK +E +ELT+ICD+LI+K+
Sbjct: 758 RSKAQTDALALQAVLRKEQMRVHSLEKVVEQKTKENDELTRICDDLISKM 807
>ref|XP_002696444.1| PREDICTED: retinoic acid induced 14-like [Bos taurus].
Length = 951
Score = 58.5 bits (140), Expect = 2e-08
Identities = 54/283 (19%), Positives = 136/283 (48%), Gaps = 5/283 (1%)
Frame = +1
Query: 214 ISDISNRDGHATDEEKLASTTCGQKPTGAEGKGMEKEMSLKMEKDGSTMPGTLEAPMEKA 393
+ D++ H + EKL T + E K K+ + + + ++A E +
Sbjct: 639 LEDVTAEYIHKAEHEKLMQVTNVSRAKAEEALSEMKSQYSKVLNELTQLKQLVDAQKENS 698
Query: 394 PVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKI 573
VS+ + + + + ++ ++E + +KE E + +K+ E + + +
Sbjct: 699 -VSIT-EHLQVITTLRTTAKEMEGKISSLKEHLASKEGEVAKLEKQLLEEKAAMTDAMVP 756
Query: 574 VAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGV 753
+ YEK + + E S+ + K + EKE+A +++ + +S + R EN++ +
Sbjct: 757 RSAYEKLQSSL---ESEVSVLASKLRDSVK-EKEKAHSEVAQIRSEVSQMKREKENIQTL 812
Query: 754 LEGFKKN-EEALKKC--AQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAE 924
L+ ++ E L+KC AQ+ LA +K+ + L+ ++K+++ ++E+ +++ +
Sbjct: 813 LKSKEQEVNELLQKCQHAQEELAEMKRHSESSSKLEEDKDKKINEMSKEVTKLKEALNSL 872
Query: 925 SAALH--AGLRKEQMKVESLERALQQKNQEIEELTKICDELIA 1047
S + + +++ ++E+L++ ++Q ++ E K E+I+
Sbjct: 873 SQLSYSASSSKRQSQQLEALQQQVKQLQNQLAECKKQHQEVIS 915
>ref|XP_604226.3| PREDICTED: retinoic acid induced 14-like, partial [Bos taurus].
Length = 939
Score = 58.5 bits (140), Expect = 2e-08
Identities = 54/283 (19%), Positives = 136/283 (48%), Gaps = 5/283 (1%)
Frame = +1
Query: 214 ISDISNRDGHATDEEKLASTTCGQKPTGAEGKGMEKEMSLKMEKDGSTMPGTLEAPMEKA 393
+ D++ H + EKL T + E K K+ + + + ++A E +
Sbjct: 627 LEDVTAEYIHKAEHEKLMQVTNVSRAKAEEALSEMKSQYSKVLNELTQLKQLVDAQKENS 686
Query: 394 PVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKI 573
VS+ + + + + ++ ++E + +KE E + +K+ E + + +
Sbjct: 687 -VSIT-EHLQVITTLRTTAKEMEGKISSLKEHLASKEGEVAKLEKQLLEEKAAMTDAMVP 744
Query: 574 VAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGV 753
+ YEK + + E S+ + K + EKE+A +++ + +S + R EN++ +
Sbjct: 745 RSAYEKLQSSL---ESEVSVLASKLRDSVK-EKEKAHSEVAQIRSEVSQMKREKENIQTL 800
Query: 754 LEGFKKN-EEALKKC--AQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAE 924
L+ ++ E L+KC AQ+ LA +K+ + L+ ++K+++ ++E+ +++ +
Sbjct: 801 LKSKEQEVNELLQKCQHAQEELAEMKRHSESSSKLEEDKDKKINEMSKEVTKLKEALNSL 860
Query: 925 SAALH--AGLRKEQMKVESLERALQQKNQEIEELTKICDELIA 1047
S + + +++ ++E+L++ ++Q ++ E K E+I+
Sbjct: 861 SQLSYSASSSKRQSQQLEALQQQVKQLQNQLAECKKQHQEVIS 903
>ref|XP_002687260.1| PREDICTED: Early endosome antigen 1-like [Bos taurus].
Length = 1432
Score = 54.7 bits (130), Expect = 4e-07
Identities = 43/193 (22%), Positives = 91/193 (47%), Gaps = 20/193 (10%)
Frame = +1
Query: 499 KEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKE- 675
+++ + + K ++ L++ ++ E ++ + E + + T Q+ +Q ++++
Sbjct: 462 RQLSSEKLMDKEQQVADLQLKLSRLEEELKEKVTNSTELQHQLDKTKQQHQEQQALQQST 521
Query: 676 -----QALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRY 840
+A DL V R + D ++ +NL+ +L+ K+N L+K +D A+++ E
Sbjct: 522 TAKLREAQNDLEQVLRQIGDKDQKIQNLEALLQKSKENISLLEKEREDLYAKIQAGEGET 581
Query: 841 QALKIHAEEKLDKANEEIAQVRTKAKAESAA-------LH-------AGLRKEQMKVESL 978
L +EK E++ Q+ K K +S + LH A LR Q +V SL
Sbjct: 582 AVLN-QLQEKNHTLQEQVTQLTEKLKNQSESHKQAQENLHDQVQEQKAHLRAAQDRVLSL 640
Query: 979 ERALQQKNQEIEE 1017
E ++ + N ++ E
Sbjct: 641 ESSINELNSQLNE 653
>ref|XP_594411.5| PREDICTED: early endosome antigen 1, 162kD [Bos taurus].
Length = 1461
Score = 54.7 bits (130), Expect = 4e-07
Identities = 43/193 (22%), Positives = 91/193 (47%), Gaps = 20/193 (10%)
Frame = +1
Query: 499 KEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKE- 675
+++ + + K ++ L++ ++ E ++ + E + + T Q+ +Q ++++
Sbjct: 462 RQLSSEKLMDKEQQVADLQLKLSRLEEELKEKVTNSTELQHQLDKTKQQHQEQQALQQST 521
Query: 676 -----QALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRY 840
+A DL V R + D ++ +NL+ +L+ K+N L+K +D A+++ E
Sbjct: 522 TAKLREAQNDLEQVLRQIGDKDQKIQNLEALLQKSKENISLLEKEREDLYAKIQAGEGET 581
Query: 841 QALKIHAEEKLDKANEEIAQVRTKAKAESAA-------LH-------AGLRKEQMKVESL 978
L +EK E++ Q+ K K +S + LH A LR Q +V SL
Sbjct: 582 AVLN-QLQEKNHTLQEQVTQLTEKLKNQSESHKQAQENLHDQVQEQKAHLRAAQDRVLSL 640
Query: 979 ERALQQKNQEIEE 1017
E ++ + N ++ E
Sbjct: 641 ESSINELNSQLNE 653
>ref|NP_001095305.1| myosin-3 [Bos taurus].
Length = 1940
Score = 53.1 bits (126), Expect = 1e-06
Identities = 60/210 (28%), Positives = 97/210 (46%), Gaps = 23/210 (10%)
Frame = +1
Query: 502 EIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDE-----------QRA--SMTSQ 642
E E +E+K + ++ V + K A EK I + +ED+ QR+ +++Q
Sbjct: 1219 EKEKSEFKLELDDLGSNVESVSKSKANLEK-ICRTLEDQLSEARGKNEEIQRSLSELSTQ 1277
Query: 643 KSFQQ-----LSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDY 807
KS Q LS + E+ + ++ + RS ++ E LK LE K + AL Q
Sbjct: 1278 KSRLQTEAGELSRQLEEKESTVSQLSRSKQAFTQQIEELKRQLEEESKAKSALAHALQSA 1337
Query: 808 -----LARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVE 972
L R + EE+ Q K + L KAN E+AQ RTK + ++ R E++ E
Sbjct: 1338 RHDCDLLREQYEEE--QEAKAELQRALSKANSEVAQWRTKYETDAIQ-----RTEEL--E 1388
Query: 973 SLERALQQKNQEIEELTKICDELIAKLGKT 1062
++ L Q+ Q+ EE + + A L KT
Sbjct: 1389 EAKKKLAQRLQDSEEQVEAVNAKCASLEKT 1418
>ref|XP_002686286.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 638
Score = 52.4 bits (124), Expect = 2e-06
Identities = 74/311 (23%), Positives = 141/311 (45%), Gaps = 31/311 (9%)
Frame = +1
Query: 202 VISQISDISNRDGHATDE-----EKLASTTCGQKPTGAEGKGME---KEMSLKME---KD 348
++ I D TDE + LA T G+ P+ E + +E KE+S K+E KD
Sbjct: 210 ILGMIKDELGECCKKTDELCNAAKTLAECTKGE-PSEREKELLEQKYKEISQKVEDQKKD 268
Query: 349 GSTMPGTL-EAPMEKAPVS-------VACGGESPLDGICLSESDKTAVLTLIREEIITKE 504
G + E E+ +S VA E L L + K L +E +++E
Sbjct: 269 FEECVGKMIEKTRERQKISAEEYAKRVAAEREKEL----LEQKVKELQEQLEDQERVSEE 324
Query: 505 IEANEWKKKYEETRQEVLEMRKIVAEYEKTI---AQMIEDEQRASMTSQKSFQQLSMEKE 675
+ + +K+ E + EM +A++E + QM+++ Q+ +K+F++ +
Sbjct: 325 LGVKKTEKQREREKTSAAEM---LAQWEDAMWEKKQMVKELQQKLEDREKTFERFRDKLT 381
Query: 676 QALADLNSVERSLSDLFRRYENLKGVLE-----GFKKNEEALKKCA----QDYLARVKQE 828
+ + + + + R +++ + E L +LE KK E+A ++ A + +VK+
Sbjct: 382 KEMRERDDLLRKMNERIQMLERLLRLLETLEEQDMKKEEQAKREAAERENEPLEQKVKEL 441
Query: 829 EQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVESLERALQQKNQE 1008
+Q+ + + E DK EE+ + R KA AE + +E ESLE+ +++ Q
Sbjct: 442 QQKSENQEKVFEVLRDKMTEELNE-REKASAEEQIRREAVEREN---ESLEKQVKELQQN 497
Query: 1009 IEELTKICDEL 1041
+E+ ++ L
Sbjct: 498 LEDQGRVFQRL 508
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 81,196,219
Number of extensions: 2196273
Number of successful extensions: 10195
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 10022
Number of HSP's successfully gapped: 25
Length of query: 774
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 664
Effective length of database: 14,041,694
Effective search space: 9323684816
Effective search space used: 9323684816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001903
(2322 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_856593.1| PREDICTED: similar to transforming acidic coile... 567 e-161
Alignment gi|XP_532800.2| PREDICTED: similar to transforming, acidic coil... 566 e-161
Alignment gi|XP_856634.1| PREDICTED: similar to transforming, acidic coil... 551 e-157
Alignment gi|XP_848665.1| PREDICTED: similar to transforming, acidic coil... 551 e-156
Alignment gi|XP_535042.2| PREDICTED: similar to transforming, acidic coil... 299 9e-81
Alignment gi|XP_536226.2| PREDICTED: similar to transforming acidic coile... 189 1e-47
Alignment gi|XP_852295.1| PREDICTED: similar to Transforming acidic coile... 157 4e-38
Alignment gi|XP_532649.2| PREDICTED: similar to Early endosome antigen 1 ... 55 4e-07
Alignment gi|NP_001107184.1| myosin-3 [Canis lupus familiaris]. 52 3e-06
Alignment gi|XP_850299.1| PREDICTED: similar to myosin, heavy polypeptide... 52 3e-06
>ref|XP_856593.1| PREDICTED: similar to transforming acidic coiled-coil containing
protein 1 short isoform isoform 3 [Canis familiaris].
Length = 366
Score = 567 bits (1461), Expect = e-161
Identities = 302/342 (88%), Positives = 307/342 (89%), Gaps = 5/342 (1%)
Frame = +1
Query: 55 GGAHSQSPRGREPATERPPRPHENAS-----GCKVKKYEAQSLALDGCSQDEGAVISQIS 219
GGA + G E E E S GCKVKKYE QSLALDGCSQDEGAVISQIS
Sbjct: 25 GGAGEEEAGGPEGDPEDEDSQAETKSLSFRSGCKVKKYETQSLALDGCSQDEGAVISQIS 84
Query: 220 DISNRDGHATDEEKLASTTCGQKPTGAEGKGMEKEMSLKMEKDGSTMPGTLEAPMEKAPV 399
DISNRDGHATDEEKLAST+ GQK GAE KG+EKEM KMEKDGS M G LE+ MEKAPV
Sbjct: 85 DISNRDGHATDEEKLASTSSGQKSAGAEVKGIEKEMCQKMEKDGSAMTGLLESSMEKAPV 144
Query: 400 SVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVA 579
SVAC GESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVA
Sbjct: 145 SVACEGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVA 204
Query: 580 EYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLE 759
EYEKTIAQMIEDEQR SMTSQKSFQQL+MEKEQALADLNSVERSLSDLFRRYENLKGVLE
Sbjct: 205 EYEKTIAQMIEDEQRTSMTSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYENLKGVLE 264
Query: 760 GFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALH 939
GFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALH
Sbjct: 265 GFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALH 324
Query: 940 AGLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD 1065
AGLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD
Sbjct: 325 AGLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD 366
>ref|XP_532800.2| PREDICTED: similar to transforming, acidic coiled-coil containing
protein 1 isoform 1 [Canis familiaris].
Length = 771
Score = 566 bits (1459), Expect = e-161
Identities = 295/312 (94%), Positives = 299/312 (95%)
Frame = +1
Query: 130 SGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQKPTGAEGK 309
SGCKVKKYE QSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST+ GQK GAE K
Sbjct: 460 SGCKVKKYETQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTSSGQKSAGAEVK 519
Query: 310 GMEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREE 489
G+EKEM KMEKDGS M G LE+ MEKAPVSVAC GESPLDGICLSESDKTAVLTLIREE
Sbjct: 520 GIEKEMCQKMEKDGSAMTGLLESSMEKAPVSVACEGESPLDGICLSESDKTAVLTLIREE 579
Query: 490 IITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSME 669
IITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQR SMTSQKSFQQL+ME
Sbjct: 580 IITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRTSMTSQKSFQQLTME 639
Query: 670 KEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQAL 849
KEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQAL
Sbjct: 640 KEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQAL 699
Query: 850 KIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVESLERALQQKNQEIEELTKI 1029
KIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVESLERALQQKNQEIEELTKI
Sbjct: 700 KIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVESLERALQQKNQEIEELTKI 759
Query: 1030 CDELIAKLGKTD 1065
CDELIAKLGKTD
Sbjct: 760 CDELIAKLGKTD 771
>ref|XP_856634.1| PREDICTED: similar to transforming, acidic coiled-coil containing
protein 1 isoform 4 [Canis familiaris].
Length = 395
Score = 551 bits (1421), Expect = e-157
Identities = 302/371 (81%), Positives = 307/371 (82%), Gaps = 34/371 (9%)
Frame = +1
Query: 55 GGAHSQSPRGREPATERPPRPHENAS-----GCKVKKYEAQSLALDGCSQDEGAVISQIS 219
GGA + G E E E S GCKVKKYE QSLALDGCSQDEGAVISQIS
Sbjct: 25 GGAGEEEAGGPEGDPEDEDSQAETKSLSFRSGCKVKKYETQSLALDGCSQDEGAVISQIS 84
Query: 220 DISNRDGHATDEEKLASTTCGQKPTGAEGKG----------------------------- 312
DISNRDGHATDEEKLAST+ GQK GAE KG
Sbjct: 85 DISNRDGHATDEEKLASTSSGQKSAGAEVKGEPEEDLEYFECSNVPVSTINHAFSSSEAG 144
Query: 313 MEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEI 492
+EKEM KMEKDGS M G LE+ MEKAPVSVAC GESPLDGICLSESDKTAVLTLIREEI
Sbjct: 145 IEKEMCQKMEKDGSAMTGLLESSMEKAPVSVACEGESPLDGICLSESDKTAVLTLIREEI 204
Query: 493 ITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEK 672
ITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQR SMTSQKSFQQL+MEK
Sbjct: 205 ITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRTSMTSQKSFQQLTMEK 264
Query: 673 EQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALK 852
EQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALK
Sbjct: 265 EQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALK 324
Query: 853 IHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVESLERALQQKNQEIEELTKIC 1032
IHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVESLERALQQKNQEIEELTKIC
Sbjct: 325 IHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVESLERALQQKNQEIEELTKIC 384
Query: 1033 DELIAKLGKTD 1065
DELIAKLGKTD
Sbjct: 385 DELIAKLGKTD 395
>ref|XP_848665.1| PREDICTED: similar to transforming, acidic coiled-coil containing
protein 1 isoform 2 [Canis familiaris].
Length = 800
Score = 551 bits (1419), Expect = e-156
Identities = 295/341 (86%), Positives = 299/341 (87%), Gaps = 29/341 (8%)
Frame = +1
Query: 130 SGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQKPTGAEGK 309
SGCKVKKYE QSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST+ GQK GAE K
Sbjct: 460 SGCKVKKYETQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTSSGQKSAGAEVK 519
Query: 310 G-----------------------------MEKEMSLKMEKDGSTMPGTLEAPMEKAPVS 402
G +EKEM KMEKDGS M G LE+ MEKAPVS
Sbjct: 520 GEPEEDLEYFECSNVPVSTINHAFSSSEAGIEKEMCQKMEKDGSAMTGLLESSMEKAPVS 579
Query: 403 VACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAE 582
VAC GESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAE
Sbjct: 580 VACEGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAE 639
Query: 583 YEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEG 762
YEKTIAQMIEDEQR SMTSQKSFQQL+MEKEQALADLNSVERSLSDLFRRYENLKGVLEG
Sbjct: 640 YEKTIAQMIEDEQRTSMTSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYENLKGVLEG 699
Query: 763 FKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHA 942
FKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHA
Sbjct: 700 FKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHA 759
Query: 943 GLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD 1065
GLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD
Sbjct: 760 GLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD 800
>ref|XP_535042.2| PREDICTED: similar to transforming, acidic coiled-coil containing
protein 2 isoform a [Canis familiaris].
Length = 2885
Score = 299 bits (765), Expect = 9e-81
Identities = 150/210 (71%), Positives = 179/210 (85%)
Frame = +1
Query: 433 GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 612
G+ + D + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 2676 GLLFQQPDLDSALRIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 2735
Query: 613 DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK 792
DEQR S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE LKK
Sbjct: 2736 DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKK 2795
Query: 793 CAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVE 972
CAQ+YL+RVK+EEQRYQALK+HAEEKLD+AN EIAQVR KA+ E AA A LRKEQ++V+
Sbjct: 2796 CAQEYLSRVKKEEQRYQALKVHAEEKLDRANAEIAQVRGKAQQEQAAYQASLRKEQLRVD 2855
Query: 973 SLERALQQKNQEIEELTKICDELIAKLGKT 1062
+LER L+QKN+EIEELTKICDELIAK+GK+
Sbjct: 2856 ALERTLEQKNKEIEELTKICDELIAKMGKS 2885
>ref|XP_536226.2| PREDICTED: similar to transforming acidic coiled coil 3 [Canis
familiaris].
Length = 945
Score = 189 bits (479), Expect = 1e-47
Identities = 129/363 (35%), Positives = 199/363 (54%), Gaps = 10/363 (2%)
Frame = +1
Query: 1 GEPRSKDRRSRSAALRAMGGAHSQSPRGREPATERPPRPHENASGCKVKKYEAQSLALDG 180
GE + +R SA ++GG P+ EPA++ + + E L G
Sbjct: 597 GEEGAAERAGASAPAGSLGGP----PQDPEPASDPKEECFRDPTEVLGTGAEVDYLEQFG 652
Query: 181 CSQDEGAVISQISDISNRDGHATDEEK----LASTTCGQKPTGAEGKGMEKEMSLKMEKD 348
S + + + + S D D + +A T + A G E L +E D
Sbjct: 653 SSLFKESALRKQSLYLKFDPLLKDSPRRPVPVAPETNSTQDMAAPPSGSPTEAKL-VELD 711
Query: 349 GSTMPGTLEAP-MEKAPVSVACGGE-----SPLDGICLSESDKTAVLTLIREEIITKEIE 510
G +AP ++ P GG S +D + ++ D A + +REE
Sbjct: 712 ---FLGAPDAPVLDPPPCVFGPGGPLLPLGSIVDVLQYTQKDMDAAVEAMREE------- 761
Query: 511 ANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALAD 690
+ + + + + LEM KI+ +E + Q +E+ Q+ ++ Q++ EK+Q AD
Sbjct: 762 NSLLRSRCDTLHAKNLEMGKIMDGFEGIVYQAMEEAQKQKELAKAEIQKILKEKDQLAAD 821
Query: 691 LNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEK 870
L+S+E+S SDLF+R+E K V+EG+ NEE+LKKC +DY+ R+++E QRYQALK HAEEK
Sbjct: 822 LSSMEKSFSDLFKRFEKQKEVIEGYHTNEESLKKCVEDYIVRIEKEGQRYQALKAHAEEK 881
Query: 871 LDKANEEIAQVRTKAKAESAALHAGLRKEQMKVESLERALQQKNQEIEELTKICDELIAK 1050
L A+EEIAQVR+KA+AE+ A A LRKEQM+++SLE+ ++QK +E EELT+ICD+LI+K
Sbjct: 882 LKLASEEIAQVRSKAQAEALAFQASLRKEQMRIQSLEKTVEQKTKENEELTRICDDLISK 941
Query: 1051 LGK 1059
+ K
Sbjct: 942 MEK 944
>ref|XP_852295.1| PREDICTED: similar to Transforming acidic coiled-coil-containing
protein 3 (ERIC-1) [Canis familiaris].
Length = 450
Score = 157 bits (397), Expect = 4e-38
Identities = 76/136 (55%), Positives = 108/136 (79%)
Frame = +1
Query: 652 QQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEE 831
Q++ EK+Q A L+S+E+S SDLF+R+E K V++G+ NEE+LKKC +DY+ R+++E
Sbjct: 314 QKILKEKDQLAAYLSSMEKSFSDLFKRFEKQKEVIQGYHTNEESLKKCVEDYIVRIEKEG 373
Query: 832 QRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVESLERALQQKNQEI 1011
Q YQALK HAEEKL A+EEIAQVR KA+AE+ A A LRKEQM+++SLE+ ++QK +E
Sbjct: 374 QWYQALKAHAEEKLKLASEEIAQVRGKAQAEALAFQASLRKEQMRIQSLEKTVEQKTKEN 433
Query: 1012 EELTKICDELIAKLGK 1059
EEL +IC++LI+K+ K
Sbjct: 434 EELIRICEDLISKMEK 449
>ref|XP_532649.2| PREDICTED: similar to Early endosome antigen 1 (Endosome-associated
protein p162) (Zinc finger FYVE domain containing protein
2) [Canis familiaris].
Length = 1514
Score = 54.7 bits (130), Expect = 4e-07
Identities = 49/196 (25%), Positives = 91/196 (46%), Gaps = 15/196 (7%)
Frame = +1
Query: 475 LIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQ 654
L E+++ KE + + + K +++ E E + + +M + Q Q++ Q
Sbjct: 546 LSSEKLMDKEQQVADLQLKLSRLEEQLKEKVTNSTELQHQLDKMKQQHQE-----QQALQ 600
Query: 655 QLSMEK-EQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEE 831
Q + K +A DL V R + D ++ +NL+ +L+ K+N L+K +D A+++ E
Sbjct: 601 QSTTAKLREAQNDLEQVLRQIGDKDQKIQNLEALLQKSKENISLLEKEREDLYAKIQAGE 660
Query: 832 QRYQALKIHAEEKLDKANEEIAQVRTKAKAESAA-------LH-------AGLRKEQMKV 969
L +EK E++ Q+ K K +S + LH A LR Q +V
Sbjct: 661 GETAVLN-QLQEKNHNLQEQVTQLTEKLKNQSESHKQAQENLHDQVQEQKAHLRAAQDRV 719
Query: 970 ESLERALQQKNQEIEE 1017
SLE ++ + N ++ E
Sbjct: 720 LSLETSVNELNSQLNE 735
>ref|NP_001107184.1| myosin-3 [Canis lupus familiaris].
Length = 1920
Score = 51.6 bits (122), Expect = 3e-06
Identities = 58/211 (27%), Positives = 94/211 (44%), Gaps = 24/211 (11%)
Frame = +1
Query: 502 EIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDE-------------QRASMTSQ 642
E E +E+K + ++ V + K A EK I + +ED+ + + +Q
Sbjct: 1216 EKEKSEFKLEIDDLSSNVESVSKSKANLEK-ICRTLEDQLSEARGKNEEIQRSMSELATQ 1274
Query: 643 KSFQQ-----LSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQ-- 801
KS Q LS + E+ + ++ + RS ++ E LK LE K + AL Q
Sbjct: 1275 KSRLQTEAGELSRQLEEKESIVSQLSRSKQAFTQQIEELKRQLEEESKAKNALAHALQSS 1334
Query: 802 ----DYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKV 969
D L +EEQ +A + L KAN E+AQ RTK + ++ R E++
Sbjct: 1335 RHDCDLLREQYEEEQEGKA---ELQRALSKANSEVAQWRTKYETDAIQ-----RTEEL-- 1384
Query: 970 ESLERALQQKNQEIEELTKICDELIAKLGKT 1062
E ++ L Q+ Q+ EE + + A L KT
Sbjct: 1385 EEAKKKLAQRLQDSEEQVEAVNAKCASLEKT 1415
>ref|XP_850299.1| PREDICTED: similar to myosin, heavy polypeptide 13, skeletal muscle
isoform 2 [Canis familiaris].
Length = 1342
Score = 51.6 bits (122), Expect = 3e-06
Identities = 49/215 (22%), Positives = 102/215 (47%), Gaps = 20/215 (9%)
Frame = +1
Query: 478 IREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQ 657
++ +I E+ + +K+ T +V + + + E+ I+++ ++++ Q++
Sbjct: 954 LKRDIDDLELTLTKVEKEKHATENKVKNLSEEMTALEENISKLTKEKKSLQEAHQQALDD 1013
Query: 658 LSMEKEQA--LADLN-SVERSLSDL---FRRYENLKGVLEGFKKNEEALKKCAQDYLARV 819
L +E+++ L +N +E+ DL + + L+ LE KK E K +Q+ + +
Sbjct: 1014 LQVEEDKVNGLIKINVKLEQQTDDLEGSLEQEKKLRADLERIKKKLEGDLKLSQESIMDL 1073
Query: 820 KQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAE---SAALHAGLRKEQMKVESLE--- 981
+ ++Q+ EEKL K EI+Q++TK E S L +++ Q ++E LE
Sbjct: 1074 ENDKQQ-------VEEKLKKKEFEISQLQTKIDDEQVHSLQLQKKIKELQARIEELEEEI 1126
Query: 982 --------RALQQKNQEIEELTKICDELIAKLGKT 1062
+A +Q++ EL +I + L G T
Sbjct: 1127 EAERASRAKAEKQRSDLSRELEEISERLEEASGVT 1161
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 84,079,664
Number of extensions: 2138047
Number of successful extensions: 11289
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 11096
Number of HSP's successfully gapped: 21
Length of query: 774
Length of database: 18,874,504
Length adjustment: 111
Effective length of query: 663
Effective length of database: 15,174,208
Effective search space: 10060499904
Effective search space used: 10060499904
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001903
(2322 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001139688.1| transforming acidic coiled-coil-containing p... 544 e-154
Alignment gi|NP_001116296.1| transforming acidic coiled-coil-containing p... 544 e-154
Alignment gi|NP_006274.2| transforming acidic coiled-coil-containing prot... 544 e-154
Alignment gi|NP_996744.2| transforming acidic coiled-coil-containing prot... 297 3e-80
Alignment gi|NP_996743.1| transforming acidic coiled-coil-containing prot... 297 3e-80
Alignment gi|NP_996742.1| transforming acidic coiled-coil-containing prot... 297 3e-80
Alignment gi|NP_008928.1| transforming acidic coiled-coil-containing prot... 297 3e-80
Alignment gi|NP_006333.1| transforming acidic coiled-coil-containing prot... 210 4e-54
Alignment gi|NP_001804.2| centromere-associated protein E [Homo sapiens]. 55 2e-07
Alignment gi|NP_003793.2| myosin-13 [Homo sapiens]. 53 1e-06
>ref|NP_001139688.1| transforming acidic coiled-coil-containing protein 1 isoform 3 [Homo
sapiens].
Length = 610
Score = 544 bits (1402), Expect = e-154
Identities = 290/341 (85%), Positives = 299/341 (87%), Gaps = 29/341 (8%)
Frame = +1
Query: 130 SGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQKPTGAEGK 309
SGCKVKK+E QSLALD CS+DEGAVISQISDISNRDGHATDEEKLAST+CGQK GAE K
Sbjct: 270 SGCKVKKHETQSLALDACSRDEGAVISQISDISNRDGHATDEEKLASTSCGQKSAGAEVK 329
Query: 310 G-----------------------------MEKEMSLKMEKDGSTMPGTLEAPMEKAPVS 402
G +EKE KME+DGST+ G LE+ EKAPVS
Sbjct: 330 GEPEEDLEYFECSNVPVSTINHAFSSSEAGIEKETCQKMEEDGSTVLGLLESSAEKAPVS 389
Query: 403 VACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAE 582
V+CGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAE
Sbjct: 390 VSCGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAE 449
Query: 583 YEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEG 762
YEKTIAQMIEDEQR SMTSQKSFQQL+MEKEQALADLNSVERSLSDLFRRYENLKGVLEG
Sbjct: 450 YEKTIAQMIEDEQRTSMTSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYENLKGVLEG 509
Query: 763 FKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHA 942
FKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHA
Sbjct: 510 FKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHA 569
Query: 943 GLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD 1065
GLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD
Sbjct: 570 GLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD 610
>ref|NP_001116296.1| transforming acidic coiled-coil-containing protein 1 isoform 2 [Homo
sapiens].
Length = 395
Score = 544 bits (1402), Expect = e-154
Identities = 290/341 (85%), Positives = 299/341 (87%), Gaps = 29/341 (8%)
Frame = +1
Query: 130 SGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQKPTGAEGK 309
SGCKVKK+E QSLALD CS+DEGAVISQISDISNRDGHATDEEKLAST+CGQK GAE K
Sbjct: 55 SGCKVKKHETQSLALDACSRDEGAVISQISDISNRDGHATDEEKLASTSCGQKSAGAEVK 114
Query: 310 G-----------------------------MEKEMSLKMEKDGSTMPGTLEAPMEKAPVS 402
G +EKE KME+DGST+ G LE+ EKAPVS
Sbjct: 115 GEPEEDLEYFECSNVPVSTINHAFSSSEAGIEKETCQKMEEDGSTVLGLLESSAEKAPVS 174
Query: 403 VACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAE 582
V+CGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAE
Sbjct: 175 VSCGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAE 234
Query: 583 YEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEG 762
YEKTIAQMIEDEQR SMTSQKSFQQL+MEKEQALADLNSVERSLSDLFRRYENLKGVLEG
Sbjct: 235 YEKTIAQMIEDEQRTSMTSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYENLKGVLEG 294
Query: 763 FKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHA 942
FKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHA
Sbjct: 295 FKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHA 354
Query: 943 GLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD 1065
GLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD
Sbjct: 355 GLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD 395
>ref|NP_006274.2| transforming acidic coiled-coil-containing protein 1 isoform 1 [Homo
sapiens].
Length = 805
Score = 544 bits (1402), Expect = e-154
Identities = 290/341 (85%), Positives = 299/341 (87%), Gaps = 29/341 (8%)
Frame = +1
Query: 130 SGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQKPTGAEGK 309
SGCKVKK+E QSLALD CS+DEGAVISQISDISNRDGHATDEEKLAST+CGQK GAE K
Sbjct: 465 SGCKVKKHETQSLALDACSRDEGAVISQISDISNRDGHATDEEKLASTSCGQKSAGAEVK 524
Query: 310 G-----------------------------MEKEMSLKMEKDGSTMPGTLEAPMEKAPVS 402
G +EKE KME+DGST+ G LE+ EKAPVS
Sbjct: 525 GEPEEDLEYFECSNVPVSTINHAFSSSEAGIEKETCQKMEEDGSTVLGLLESSAEKAPVS 584
Query: 403 VACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAE 582
V+CGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAE
Sbjct: 585 VSCGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAE 644
Query: 583 YEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEG 762
YEKTIAQMIEDEQR SMTSQKSFQQL+MEKEQALADLNSVERSLSDLFRRYENLKGVLEG
Sbjct: 645 YEKTIAQMIEDEQRTSMTSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYENLKGVLEG 704
Query: 763 FKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHA 942
FKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHA
Sbjct: 705 FKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHA 764
Query: 943 GLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD 1065
GLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD
Sbjct: 765 GLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD 805
>ref|NP_996744.2| transforming acidic coiled-coil-containing protein 2 isoform a [Homo
sapiens].
Length = 2948
Score = 297 bits (760), Expect = 3e-80
Identities = 149/210 (70%), Positives = 179/210 (85%)
Frame = +1
Query: 433 GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 612
G+ + D + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 2739 GLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 2798
Query: 613 DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK 792
DEQR S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE LK+
Sbjct: 2799 DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKR 2858
Query: 793 CAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVE 972
CAQ+YL+RVK+EEQRYQALK+HAEEKLD+AN EIAQVR KA+ E AA A LRKEQ++V+
Sbjct: 2859 CAQEYLSRVKKEEQRYQALKVHAEEKLDRANAEIAQVRGKAQQEQAAHQASLRKEQLRVD 2918
Query: 973 SLERALQQKNQEIEELTKICDELIAKLGKT 1062
+LER L+QKN+EIEELTKICDELIAK+GK+
Sbjct: 2919 ALERTLEQKNKEIEELTKICDELIAKMGKS 2948
>ref|NP_996743.1| transforming acidic coiled-coil-containing protein 2 isoform b [Homo
sapiens].
Length = 1094
Score = 297 bits (760), Expect = 3e-80
Identities = 149/210 (70%), Positives = 179/210 (85%)
Frame = +1
Query: 433 GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 612
G+ + D + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 885 GLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 944
Query: 613 DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK 792
DEQR S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE LK+
Sbjct: 945 DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKR 1004
Query: 793 CAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVE 972
CAQ+YL+RVK+EEQRYQALK+HAEEKLD+AN EIAQVR KA+ E AA A LRKEQ++V+
Sbjct: 1005 CAQEYLSRVKKEEQRYQALKVHAEEKLDRANAEIAQVRGKAQQEQAAHQASLRKEQLRVD 1064
Query: 973 SLERALQQKNQEIEELTKICDELIAKLGKT 1062
+LER L+QKN+EIEELTKICDELIAK+GK+
Sbjct: 1065 ALERTLEQKNKEIEELTKICDELIAKMGKS 1094
>ref|NP_996742.1| transforming acidic coiled-coil-containing protein 2 isoform c [Homo
sapiens].
Length = 996
Score = 297 bits (760), Expect = 3e-80
Identities = 149/210 (70%), Positives = 179/210 (85%)
Frame = +1
Query: 433 GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 612
G+ + D + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 787 GLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 846
Query: 613 DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK 792
DEQR S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE LK+
Sbjct: 847 DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKR 906
Query: 793 CAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVE 972
CAQ+YL+RVK+EEQRYQALK+HAEEKLD+AN EIAQVR KA+ E AA A LRKEQ++V+
Sbjct: 907 CAQEYLSRVKKEEQRYQALKVHAEEKLDRANAEIAQVRGKAQQEQAAHQASLRKEQLRVD 966
Query: 973 SLERALQQKNQEIEELTKICDELIAKLGKT 1062
+LER L+QKN+EIEELTKICDELIAK+GK+
Sbjct: 967 ALERTLEQKNKEIEELTKICDELIAKMGKS 996
>ref|NP_008928.1| transforming acidic coiled-coil-containing protein 2 isoform d [Homo
sapiens].
Length = 1026
Score = 297 bits (760), Expect = 3e-80
Identities = 149/210 (70%), Positives = 179/210 (85%)
Frame = +1
Query: 433 GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 612
G+ + D + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 817 GLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 876
Query: 613 DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK 792
DEQR S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE LK+
Sbjct: 877 DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKR 936
Query: 793 CAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVE 972
CAQ+YL+RVK+EEQRYQALK+HAEEKLD+AN EIAQVR KA+ E AA A LRKEQ++V+
Sbjct: 937 CAQEYLSRVKKEEQRYQALKVHAEEKLDRANAEIAQVRGKAQQEQAAHQASLRKEQLRVD 996
Query: 973 SLERALQQKNQEIEELTKICDELIAKLGKT 1062
+LER L+QKN+EIEELTKICDELIAK+GK+
Sbjct: 997 ALERTLEQKNKEIEELTKICDELIAKMGKS 1026
>ref|NP_006333.1| transforming acidic coiled-coil-containing protein 3 [Homo sapiens].
Length = 838
Score = 210 bits (535), Expect = 4e-54
Identities = 114/238 (47%), Positives = 159/238 (66%), Gaps = 6/238 (2%)
Frame = +1
Query: 364 GTLEAPMEKAPVSVACGGESPL------DGICLSESDKTAVLTLIREEIITKEIEANEWK 525
G L+ P+ P V G PL D + S+ D AV+ +EE E +
Sbjct: 607 GALDIPVPGPPPGVPAPGGPPLSTGPIVDLLQYSQKDLDAVVKATQEE-------NRELR 659
Query: 526 KKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVE 705
+ EE + LE+ KI+ +E+ + Q +E+ Q+ S+ Q++ EK+Q DLNS+E
Sbjct: 660 SRCEELHGKNLELGKIMDRFEEVVYQAMEEVQKQKELSKAEIQKVLKEKDQLTTDLNSME 719
Query: 706 RSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKAN 885
+S SDLF+R+E K V+EG++KNEE+LKKC +DYLAR+ QE QRYQALK HAEEKL AN
Sbjct: 720 KSFSDLFKRFEKQKEVIEGYRKNEESLKKCVEDYLARITQEGQRYQALKAHAEEKLQLAN 779
Query: 886 EEIAQVRTKAKAESAALHAGLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGK 1059
EEIAQVR+KA+AE+ AL A LRKEQM+++SLE+ ++QK +E EELT+ICD+LI+K+ K
Sbjct: 780 EEIAQVRSKAQAEALALQASLRKEQMRIQSLEKTVEQKTKENEELTRICDDLISKMEK 837
>ref|NP_001804.2| centromere-associated protein E [Homo sapiens].
Length = 2701
Score = 55.5 bits (132), Expect = 2e-07
Identities = 45/212 (21%), Positives = 106/212 (50%), Gaps = 4/212 (1%)
Frame = +1
Query: 418 ESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYE----ETRQEVLEMRKIVAEY 585
+ +D + S S+KTA + I T+++E + K + E QE+L K V+E
Sbjct: 1248 QETIDELRRSVSEKTAQI------INTQDLEKSHTKLQEEIPVLHEEQELLPNVKEVSET 1301
Query: 586 EKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGF 765
++T+ ++ ++++ + ++ ME+ + + + L + +NLK + E
Sbjct: 1302 QETMNELELLTEQSTTKDSTTLARIEMERLRLNEKFQESQEEIKSLTKERDNLKTIKEAL 1361
Query: 766 KKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHAG 945
+ + LK+ ++ LA++ QE Q Q ++ +EK ++ + ++++ +SA L
Sbjct: 1362 EVKHDQLKEHIRETLAKI-QESQSKQEQSLNMKEKDNETTKIVSEMEQFKPKDSALL--- 1417
Query: 946 LRKEQMKVESLERALQQKNQEIEELTKICDEL 1041
+ ++++ L + LQ+ + E++ + K D+L
Sbjct: 1418 --RIEIEMLGLSKRLQESHDEMKSVAKEKDDL 1447
>ref|NP_003793.2| myosin-13 [Homo sapiens].
Length = 1938
Score = 52.8 bits (125), Expect = 1e-06
Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 6/196 (3%)
Frame = +1
Query: 493 ITKEIEA-NEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSME 669
+ IEA ++ K E T + V + + ++ Q+I D Q +LS
Sbjct: 1235 MASNIEALSKSKSNIERTCRTVEDQFSEIKAKDEQQTQLIHDLNMQKARLQTQNGELSHR 1294
Query: 670 KEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDY-----LARVKQEEQ 834
E+ + ++ + +S L ++ E LK +E K + A+ Q L R + EE+
Sbjct: 1295 VEEKESLISQLTKSKQALTQQLEELKRQMEEETKAKNAMAHALQSSRHDCDLLREQYEEE 1354
Query: 835 RYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVESLERALQQKNQEIE 1014
Q K + L KAN E+AQ RTK + ++ R E++ E ++ L Q+ QE E
Sbjct: 1355 --QEAKAELQRALSKANSEVAQWRTKYETDAIQ-----RTEEL--EEAKKKLAQRLQEAE 1405
Query: 1015 ELTKICDELIAKLGKT 1062
E T+ + A L KT
Sbjct: 1406 ENTETANSKCASLEKT 1421
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 82,393,039
Number of extensions: 2095865
Number of successful extensions: 10416
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 10186
Number of HSP's successfully gapped: 27
Length of query: 774
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 664
Effective length of database: 14,671,124
Effective search space: 9741626336
Effective search space used: 9741626336
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001903
(2322 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_955355.1| transforming acidic coiled-coil-containing prot... 534 e-151
Alignment gi|NP_796063.3| transforming acidic coiled-coil-containing prot... 533 e-151
Alignment gi|NP_996738.2| transforming acidic coiled-coil-containing prot... 294 2e-79
Alignment gi|NP_067289.2| transforming acidic coiled-coil-containing prot... 294 2e-79
Alignment gi|NP_001004468.1| transforming acidic coiled-coil-containing p... 294 2e-79
Alignment gi|NP_001035525.1| transforming acidic coiled-coil-containing p... 186 7e-47
Alignment gi|NP_082297.1| myosin-14 [Mus musculus]. 54 4e-07
Alignment gi|NP_001139430.1| rootletin isoform 2 [Mus musculus]. 54 4e-07
Alignment gi|NP_742120.2| rootletin isoform 1 [Mus musculus]. 54 4e-07
Alignment gi|NP_001093105.1| myosin-3 [Mus musculus]. 54 7e-07
>ref|NP_955355.1| transforming acidic coiled-coil-containing protein 1 short isoform
[Mus musculus].
Length = 368
Score = 534 bits (1375), Expect = e-151
Identities = 285/350 (81%), Positives = 306/350 (87%), Gaps = 7/350 (2%)
Frame = +1
Query: 37 AALRAMGGAHSQS--PRGREPATERPPRPHENA----SGCKVKKYEAQSLALDGCSQDEG 198
+A+R G ++ P G +P E + + SGCKVKKYEAQ L LD CSQDEG
Sbjct: 20 SAVRGSGAGEDEAGGPEG-DPEEEEDSQAETKSLSFRSGCKVKKYEAQPLDLDACSQDEG 78
Query: 199 AVISQISDISNRDGHATDEEKLASTT-CGQKPTGAEGKGMEKEMSLKMEKDGSTMPGTLE 375
AVIS+IS+I NRDGHATDEEKLAST+ C QK GA KG+EKE KMEK+ + G LE
Sbjct: 79 AVISKISEIPNRDGHATDEEKLASTSSCAQKSAGAGVKGIEKETCQKMEKEELAVHGLLE 138
Query: 376 APMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEV 555
+ EKAPVSVACGGESPLDGICLSE+DKTAVLTLIREEIITKEIEANEWKKKYEETR+EV
Sbjct: 139 SSSEKAPVSVACGGESPLDGICLSEADKTAVLTLIREEIITKEIEANEWKKKYEETREEV 198
Query: 556 LEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRY 735
LEMRKIVAEYEKTIAQMIEDEQR SM+SQKSFQQL+MEKEQALADLNSVERSLSDLFRRY
Sbjct: 199 LEMRKIVAEYEKTIAQMIEDEQRTSMSSQKSFQQLTMEKEQALADLNSVERSLSDLFRRY 258
Query: 736 ENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKA 915
ENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALK+HAEEKLD+ANEEIAQVR+KA
Sbjct: 259 ENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKVHAEEKLDRANEEIAQVRSKA 318
Query: 916 KAESAALHAGLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD 1065
KAESAALHAGLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD
Sbjct: 319 KAESAALHAGLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD 368
>ref|NP_796063.3| transforming acidic coiled-coil-containing protein 1 long isoform
[Mus musculus].
Length = 776
Score = 533 bits (1373), Expect = e-151
Identities = 278/313 (88%), Positives = 292/313 (93%), Gaps = 1/313 (0%)
Frame = +1
Query: 130 SGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTT-CGQKPTGAEG 306
SGCKVKKYEAQ L LD CSQDEGAVIS+IS+I NRDGHATDEEKLAST+ C QK GA
Sbjct: 464 SGCKVKKYEAQPLDLDACSQDEGAVISKISEIPNRDGHATDEEKLASTSSCAQKSAGAGV 523
Query: 307 KGMEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIRE 486
KG+EKE KMEK+ + G LE+ EKAPVSVACGGESPLDGICLSE+DKTAVLTLIRE
Sbjct: 524 KGIEKETCQKMEKEELAVHGLLESSSEKAPVSVACGGESPLDGICLSEADKTAVLTLIRE 583
Query: 487 EIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSM 666
EIITKEIEANEWKKKYEETR+EVLEMRKIVAEYEKTIAQMIEDEQR SM+SQKSFQQL+M
Sbjct: 584 EIITKEIEANEWKKKYEETREEVLEMRKIVAEYEKTIAQMIEDEQRTSMSSQKSFQQLTM 643
Query: 667 EKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQA 846
EKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQA
Sbjct: 644 EKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQA 703
Query: 847 LKIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVESLERALQQKNQEIEELTK 1026
LK+HAEEKLD+ANEEIAQVR+KAKAESAALHAGLRKEQMKVESLERALQQKNQEIEELTK
Sbjct: 704 LKVHAEEKLDRANEEIAQVRSKAKAESAALHAGLRKEQMKVESLERALQQKNQEIEELTK 763
Query: 1027 ICDELIAKLGKTD 1065
ICDELIAKLGKTD
Sbjct: 764 ICDELIAKLGKTD 776
>ref|NP_996738.2| transforming acidic coiled-coil-containing protein 2 isoform a [Mus
musculus].
Length = 1146
Score = 294 bits (753), Expect = 2e-79
Identities = 147/210 (70%), Positives = 178/210 (84%)
Frame = +1
Query: 433 GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 612
G+ + D + L + R E+I KE E +EW+ KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 937 GLLFQQPDLDSALQVARAEVIAKEREVSEWRDKYEESRREVVEMRKIVAEYEKTIAQMIE 996
Query: 613 DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK 792
DEQR S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE LKK
Sbjct: 997 DEQREKSISHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKK 1056
Query: 793 CAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVE 972
CAQ+YL+RVK+EEQRYQALK+HAEEKLD+AN EIAQVR KA+ E AA A LRKEQ++V+
Sbjct: 1057 CAQEYLSRVKKEEQRYQALKVHAEEKLDRANAEIAQVRGKAQQEQAAYQASLRKEQLRVD 1116
Query: 973 SLERALQQKNQEIEELTKICDELIAKLGKT 1062
+LER L+QKN+EIEELTKICDELIAK+GK+
Sbjct: 1117 ALERTLEQKNKEIEELTKICDELIAKMGKS 1146
>ref|NP_067289.2| transforming acidic coiled-coil-containing protein 2 isoform b [Mus
musculus].
Length = 1036
Score = 294 bits (753), Expect = 2e-79
Identities = 147/210 (70%), Positives = 178/210 (84%)
Frame = +1
Query: 433 GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 612
G+ + D + L + R E+I KE E +EW+ KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 827 GLLFQQPDLDSALQVARAEVIAKEREVSEWRDKYEESRREVVEMRKIVAEYEKTIAQMIE 886
Query: 613 DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK 792
DEQR S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE LKK
Sbjct: 887 DEQREKSISHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKK 946
Query: 793 CAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVE 972
CAQ+YL+RVK+EEQRYQALK+HAEEKLD+AN EIAQVR KA+ E AA A LRKEQ++V+
Sbjct: 947 CAQEYLSRVKKEEQRYQALKVHAEEKLDRANAEIAQVRGKAQQEQAAYQASLRKEQLRVD 1006
Query: 973 SLERALQQKNQEIEELTKICDELIAKLGKT 1062
+LER L+QKN+EIEELTKICDELIAK+GK+
Sbjct: 1007 ALERTLEQKNKEIEELTKICDELIAKMGKS 1036
>ref|NP_001004468.1| transforming acidic coiled-coil-containing protein 2 isoform c [Mus
musculus].
Length = 2879
Score = 294 bits (753), Expect = 2e-79
Identities = 147/210 (70%), Positives = 178/210 (84%)
Frame = +1
Query: 433 GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 612
G+ + D + L + R E+I KE E +EW+ KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 2670 GLLFQQPDLDSALQVARAEVIAKEREVSEWRDKYEESRREVVEMRKIVAEYEKTIAQMIE 2729
Query: 613 DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK 792
DEQR S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE LKK
Sbjct: 2730 DEQREKSISHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKK 2789
Query: 793 CAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVE 972
CAQ+YL+RVK+EEQRYQALK+HAEEKLD+AN EIAQVR KA+ E AA A LRKEQ++V+
Sbjct: 2790 CAQEYLSRVKKEEQRYQALKVHAEEKLDRANAEIAQVRGKAQQEQAAYQASLRKEQLRVD 2849
Query: 973 SLERALQQKNQEIEELTKICDELIAKLGKT 1062
+LER L+QKN+EIEELTKICDELIAK+GK+
Sbjct: 2850 ALERTLEQKNKEIEELTKICDELIAKMGKS 2879
>ref|NP_001035525.1| transforming acidic coiled-coil-containing protein 3 [Mus musculus].
Length = 630
Score = 186 bits (472), Expect = 7e-47
Identities = 106/240 (44%), Positives = 156/240 (65%), Gaps = 8/240 (3%)
Frame = +1
Query: 364 GTLEAPMEKAPVSVA-----CGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKK 528
G L+ P+ P+ V E +D + S+ D AV+ ++++E + E K
Sbjct: 397 GDLDVPVSAPPLCVLEPRGLLPAEPIVDVLKYSQKDLDAVVNVMQQENL-------ELKS 449
Query: 529 KYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRA---SMTSQKSFQQLSMEKEQALADLNS 699
KYE+ + LEM K V E+EK + +E+ ++ ++ Q++ E++Q ADLNS
Sbjct: 450 KYEDLNTKYLEMGKSVDEFEKIAYKSLEEAEKQRELKEIAEDKIQKVLKERDQLNADLNS 509
Query: 700 VERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDK 879
+E+S SDLF+R+E K V+EG++KNEE+LKK + + ++++E QRYQALKIHAEEKL
Sbjct: 510 MEKSFSDLFKRFEKRKEVIEGYQKNEESLKKYVGECIVKIEKEGQRYQALKIHAEEKLRL 569
Query: 880 ANEEIAQVRTKAKAESAALHAGLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGK 1059
ANEEIAQV +KA+AE AL A LRK QM+ SLE L+QK +EI+ELT+ICD+LI+K+ K
Sbjct: 570 ANEEIAQVHSKAQAEVLALQASLRKAQMQNHSLEMTLEQKTKEIDELTRICDDLISKMEK 629
>ref|NP_082297.1| myosin-14 [Mus musculus].
Length = 1992
Score = 54.3 bits (129), Expect = 4e-07
Identities = 73/323 (22%), Positives = 137/323 (42%), Gaps = 20/323 (6%)
Frame = +1
Query: 139 KVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQKPTGAEGKGME 318
K ++ E+Q + G S D S+ ++ R A E + ST + AE K +
Sbjct: 1266 KRRRLESQLQEVQGRSSDSERARSEAAEKLQR---AQAELESVSTALSE----AESKAIR 1318
Query: 319 KEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIIT 498
+ ++ S + T E E+ +A G + E++ + + EE++
Sbjct: 1319 --LGKELSSAESQLHDTQELLQEETRAKLALGSR-----VRALEAEAAGLREQMEEEVVA 1371
Query: 499 KE----------IEANEWKKKYEETRQEVL---EMRKIVAEYEKTIAQMIEDEQRASMTS 639
+E + +EW+++ EE + E R+ A +T+ Q + ++ A
Sbjct: 1372 RERAGRELQSTQAQLSEWRRRQEEEAAVLEAGEEARRRAAREAETLTQRLAEKTEAVERL 1431
Query: 640 QKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARV 819
+++ ++L E + A DL ++ LS L ++ +L E+A A + R+
Sbjct: 1432 ERARRRLQQELDDATVDLGQQKQLLSTLEKKQRKFDQLLA----EEKAAVLRAVEDRERI 1487
Query: 820 KQE--EQRYQALKI-HAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVESLERAL 990
+ E E+ +AL + A E+ +A EE+ + +AE AL + V LERA
Sbjct: 1488 EAEGREREARALSLTRALEEEQEAREELERQNRALRAELEALLSSKDDVGKNVHELERAR 1547
Query: 991 QQKNQEIEEL----TKICDELIA 1047
+ Q +L T++ DEL A
Sbjct: 1548 KAAEQAASDLRTQVTELEDELTA 1570
>ref|NP_001139430.1| rootletin isoform 2 [Mus musculus].
Length = 1845
Score = 54.3 bits (129), Expect = 4e-07
Identities = 61/270 (22%), Positives = 110/270 (40%), Gaps = 55/270 (20%)
Frame = +1
Query: 415 GESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYE-- 588
G SP G+ + SD ++ LTLI + ++++ + + +YE +++ + +RK +++ E
Sbjct: 341 GRSPRRGLSPACSD-SSTLTLIHSALHKRQLQVQDMRGRYEASQELLGSVRKQLSDSEGE 399
Query: 589 ---------------KTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDL 723
AQ ED QR + + + + LS EK L ++ +L
Sbjct: 400 RRGLEEQLQRLRDQTAASAQAQEDAQREAQRLRSANELLSREKGNLTHSLQVTQQQAKEL 459
Query: 724 FRRYENLKGVLEGFKKNEEALKKCAQDYL---ARVKQEEQRYQALKIHAEEKLDKANEEI 894
+ E L+ E K+ L+ +D + AR ++E +R E K +E+
Sbjct: 460 RQELEKLQAAQEELKRQHNQLEDAQEDSVQEGARARRELERSHRQLEQLEVKRSGLTKEL 519
Query: 895 AQVR------------------------TKAKAESAAL----------HAGLRKEQMKVE 972
+VR TKA+A A L A LR K+
Sbjct: 520 VEVREALSCAILQRDVLQTEKAEVAEALTKAEAGRAQLELSLTKLRAEEASLRDSLSKMS 579
Query: 973 SLERALQQKNQEIEEL-TKICDELIAKLGK 1059
+L +L Q E+ L ++ +E +A LG+
Sbjct: 580 ALNESLAQDKLELNRLIAQLEEEKVALLGR 609
>ref|NP_742120.2| rootletin isoform 1 [Mus musculus].
Length = 2009
Score = 54.3 bits (129), Expect = 4e-07
Identities = 61/270 (22%), Positives = 110/270 (40%), Gaps = 55/270 (20%)
Frame = +1
Query: 415 GESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYE-- 588
G SP G+ + SD ++ LTLI + ++++ + + +YE +++ + +RK +++ E
Sbjct: 505 GRSPRRGLSPACSD-SSTLTLIHSALHKRQLQVQDMRGRYEASQELLGSVRKQLSDSEGE 563
Query: 589 ---------------KTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDL 723
AQ ED QR + + + + LS EK L ++ +L
Sbjct: 564 RRGLEEQLQRLRDQTAASAQAQEDAQREAQRLRSANELLSREKGNLTHSLQVTQQQAKEL 623
Query: 724 FRRYENLKGVLEGFKKNEEALKKCAQDYL---ARVKQEEQRYQALKIHAEEKLDKANEEI 894
+ E L+ E K+ L+ +D + AR ++E +R E K +E+
Sbjct: 624 RQELEKLQAAQEELKRQHNQLEDAQEDSVQEGARARRELERSHRQLEQLEVKRSGLTKEL 683
Query: 895 AQVR------------------------TKAKAESAAL----------HAGLRKEQMKVE 972
+VR TKA+A A L A LR K+
Sbjct: 684 VEVREALSCAILQRDVLQTEKAEVAEALTKAEAGRAQLELSLTKLRAEEASLRDSLSKMS 743
Query: 973 SLERALQQKNQEIEEL-TKICDELIAKLGK 1059
+L +L Q E+ L ++ +E +A LG+
Sbjct: 744 ALNESLAQDKLELNRLIAQLEEEKVALLGR 773
>ref|NP_001093105.1| myosin-3 [Mus musculus].
Length = 1940
Score = 53.5 bits (127), Expect = 7e-07
Identities = 61/211 (28%), Positives = 97/211 (45%), Gaps = 24/211 (11%)
Frame = +1
Query: 502 EIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDE-----------QRA--SMTSQ 642
E E +E+K + ++ V + K A EK I + +ED+ QR+ +T+Q
Sbjct: 1219 EKEKSEFKLEIDDLSSSVESVSKSKANLEK-ICRTLEDQLSEARGKNEEMQRSLSELTTQ 1277
Query: 643 KSFQQ-----LSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQ-- 801
KS Q LS + E+ + ++ + RS ++ E LK LE K + AL Q
Sbjct: 1278 KSRLQTEAGELSRQLEEKESIVSQLSRSKQAFTQQIEELKRQLEEENKAKNALAHALQSS 1337
Query: 802 ----DYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKV 969
D L +EEQ +A + L KAN E+AQ RTK + ++ R E++
Sbjct: 1338 RHDCDLLREQYEEEQEGKA---ELQRALSKANSEVAQWRTKYETDAIQ-----RTEEL-- 1387
Query: 970 ESLERALQQKNQEIEELTKICDELIAKLGKT 1062
E ++ L Q+ Q+ EE + + A L KT
Sbjct: 1388 EEAKKKLAQRLQDSEEQVEAVNAKCASLEKT 1418
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 69,811,730
Number of extensions: 1755965
Number of successful extensions: 8061
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 7939
Number of HSP's successfully gapped: 15
Length of query: 774
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 665
Effective length of database: 12,343,635
Effective search space: 8208517275
Effective search space used: 8208517275
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001903
(2322 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003359527.1| PREDICTED: transforming acidic coiled-coil-c... 451 e-126
Alignment gi|XP_003128852.1| PREDICTED: transforming acidic coiled-coil-c... 183 4e-46
Alignment gi|XP_003134701.1| PREDICTED: caldesmon [Sus scrofa]. 54 4e-07
Alignment gi|XP_003132042.1| PREDICTED: myosin-3 [Sus scrofa]. 54 4e-07
Alignment gi|XP_001926390.1| PREDICTED: early endosome antigen 1 [Sus scr... 54 5e-07
Alignment gi|XP_001926507.1| PREDICTED: ras association domain-containing... 51 2e-06
Alignment gi|XP_003356719.1| PREDICTED: S phase cyclin A-associated prote... 50 5e-06
Alignment gi|XP_001928242.1| PREDICTED: centrosomal protein of 290 kDa-li... 50 5e-06
>ref|XP_003359527.1| PREDICTED: transforming acidic coiled-coil-containing protein 1-like
[Sus scrofa].
Length = 254
Score = 451 bits (1159), Expect = e-126
Identities = 237/251 (94%), Positives = 242/251 (96%)
Frame = +1
Query: 313 MEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEI 492
++K M+ ++ D GTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEI
Sbjct: 4 VKKLMTRRVTCDLFRPQGTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEI 63
Query: 493 ITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEK 672
ITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEK
Sbjct: 64 ITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEK 123
Query: 673 EQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALK 852
EQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALK
Sbjct: 124 EQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALK 183
Query: 853 IHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVESLERALQQKNQEIEELTKIC 1032
IHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVESLERALQQKNQEIEELTKIC
Sbjct: 184 IHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVESLERALQQKNQEIEELTKIC 243
Query: 1033 DELIAKLGKTD 1065
DELIAKLGKTD
Sbjct: 244 DELIAKLGKTD 254
>ref|XP_003128852.1| PREDICTED: transforming acidic coiled-coil-containing protein 3-like
[Sus scrofa].
Length = 740
Score = 183 bits (464), Expect = 4e-46
Identities = 90/182 (49%), Positives = 136/182 (74%)
Frame = +1
Query: 508 EANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALA 687
E E + + E +++VLEM KI+ +E+T+ Q +E+ Q+ ++ Q+ E+E
Sbjct: 556 ENAELRSRCTELQEKVLEMGKIMDRFEETVYQAMEEAQKQKELARVEVQKALQEQEHVSG 615
Query: 688 DLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEE 867
DL SVE+S S+LFRR+E K V+EG++ NE +LKKC ++Y+ R+++E QRYQALK HAEE
Sbjct: 616 DLRSVEKSFSELFRRFEKQKEVIEGYRTNEASLKKCVEEYMERLEKEGQRYQALKAHAEE 675
Query: 868 KLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVESLERALQQKNQEIEELTKICDELIA 1047
KL A+EE+AQVR++A+AE AL A L+KEQM+V+SLE+A++QK +E +ELT+ICD+LI+
Sbjct: 676 KLQLASEEMAQVRSRAQAEVLALQAVLKKEQMRVQSLEKAMEQKTKENDELTRICDDLIS 735
Query: 1048 KL 1053
K+
Sbjct: 736 KM 737
>ref|XP_003134701.1| PREDICTED: caldesmon [Sus scrofa].
Length = 871
Score = 53.9 bits (128), Expect = 4e-07
Identities = 79/347 (22%), Positives = 143/347 (41%), Gaps = 18/347 (5%)
Frame = +1
Query: 52 MGGAHSQSPRG----REPATERPPRPHENASGCKVKKYEAQSLALDGCSQDEGAVISQIS 219
+GG+ SQ R + A +R E A+ + ++ + L + G V Q+
Sbjct: 78 LGGSGSQGRRSLAALSQIAYQRNDDDEEEAARERRRRARQERLRQKQEEESLGQVTDQVE 137
Query: 220 DISNRDGHATDEEKLASTTCGQKPTGAEGKGMEKEMSLKMEKDGSTMPGTLEAPMEKAPV 399
N DE+ +TT Q E +E+ ++ + E+ + LE E P
Sbjct: 138 --VNTQNSVPDEQVKTTTTNTQMEADDEAALLER-LARREERRQKRLQEALERQKEFDPT 194
Query: 400 SVACGGESPLDGICLSES-DKTAV-----------LTLIREEIITKEIEANEWKKKYEET 543
P + S + D+TA + E++TK + N+W+ E+
Sbjct: 195 IADASSSPPSRRMQNSTAEDETAEKDEKSESRQERYEIEETEVVTKSYQKNDWRDAEEQK 254
Query: 544 RQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDL 723
++ E K E EK IE+ Q + +K+ + ++E +A L + + S +
Sbjct: 255 KE---EKEKEEEEEEKPNQGSIEENQVEMVVEEKTAE---TQEETGMA-LKNGQISADEP 307
Query: 724 FRRYENLKGVLE--GFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIA 897
E KG E +K EE ++ A+ AR++ EE+ + +K ++K+ EE A
Sbjct: 308 RTEEEREKGSHEMPHNEKIEEEARERAEAERARLEAEER--ERMKAEQDQKI---AEEKA 362
Query: 898 QVRTKAKAESAALHAGLRKEQMKVESLERALQQKNQEIEELTKICDE 1038
+ + KA + +E+ ++E ER Q+ Q IEE + E
Sbjct: 363 RREAEEKAAAQERERRAAEERQRIEEEERRAAQERQRIEEERRAAQE 409
>ref|XP_003132042.1| PREDICTED: myosin-3 [Sus scrofa].
Length = 1940
Score = 53.9 bits (128), Expect = 4e-07
Identities = 59/210 (28%), Positives = 94/210 (44%), Gaps = 23/210 (10%)
Frame = +1
Query: 502 EIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDE-------------QRASMTSQ 642
E E +E+K + ++ V + K A EK I + +ED+ + +T Q
Sbjct: 1219 EKEKSEFKLELDDLAGNVESVSKAKANLEK-ICRTLEDQLSEARGKNEEIQRSMSELTMQ 1277
Query: 643 KSFQQ-----LSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDY 807
KS Q LS + E+ + ++ + RS ++ E LK LE K + AL Q
Sbjct: 1278 KSRLQTEAGELSRQLEEKESTVSQLSRSKQAFTQQIEELKRQLEEESKAKNALAHALQSA 1337
Query: 808 -----LARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVE 972
L R + EE+ Q K + L KAN E+AQ RTK + ++ R E++ E
Sbjct: 1338 RHDCDLLREQYEEE--QEAKAELQRALSKANSEVAQWRTKYETDAIQ-----RTEEL--E 1388
Query: 973 SLERALQQKNQEIEELTKICDELIAKLGKT 1062
++ L Q+ Q+ EE + + A L KT
Sbjct: 1389 EAKKKLAQRLQDSEEQVEAVNAKCASLEKT 1418
>ref|XP_001926390.1| PREDICTED: early endosome antigen 1 [Sus scrofa].
Length = 1410
Score = 53.5 bits (127), Expect = 5e-07
Identities = 43/193 (22%), Positives = 92/193 (47%), Gaps = 20/193 (10%)
Frame = +1
Query: 499 KEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKE- 675
+++ + + K ++ L++ ++ E ++ +A E + + T Q+ +Q ++++
Sbjct: 440 RQLSSEKLMDKEQQVADLQLKLSRLEEELKEKVANSTELQHQLDKTKQQHQEQQALQQST 499
Query: 676 -----QALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRY 840
+A DL V R + D ++ +NL+ +L+ K+N L+K +D A+++ E
Sbjct: 500 TAKLREAQNDLEQVLRQIGDKDQKIQNLEALLQKSKENISLLEKEREDLYAKIQAGEGET 559
Query: 841 QALKIHAEEKLDKANEEIAQVRTKAKAESAA-------LH-------AGLRKEQMKVESL 978
L +EK E++ Q+ K K +S + LH A LR Q +V SL
Sbjct: 560 AVLN-QLQEKNHILQEQVTQLTEKLKNQSESHKQAQENLHDQVQEQKAHLRAAQDRVLSL 618
Query: 979 ERALQQKNQEIEE 1017
E ++ + + ++ E
Sbjct: 619 EASISELSSQLNE 631
>ref|XP_001926507.1| PREDICTED: ras association domain-containing protein 8 [Sus scrofa].
Length = 419
Score = 51.2 bits (121), Expect = 2e-06
Identities = 51/198 (25%), Positives = 87/198 (43%), Gaps = 8/198 (4%)
Frame = +1
Query: 457 KTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMT 636
+T L I +E+ + EIE W++KY +E +IV +K +E E+
Sbjct: 173 QTEKLQSIEKELESNEIEIRFWEQKYNSNLEE-----EIVRLEQKIKRNDVEIEEEEFWE 227
Query: 637 SQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLAR 816
++ +Q E E+ L D L+ + + + E LK DYLA+
Sbjct: 228 NELQIEQ---ENEKQLKD----------------QLQEIRQKITECESKLK----DYLAQ 264
Query: 817 VKQEEQRYQALKIHAEEKLDKANEE-----IAQVRTKAKAE---SAALHAGLRKEQMKVE 972
++ E +A K+ E + + NEE I +VR + + S L G++ + +
Sbjct: 265 IQTMESGLEAEKLQREVQEAQVNEEEVKGKIGKVRGEIDIQGQQSLRLENGIKAVERSLG 324
Query: 973 SLERALQQKNQEIEELTK 1026
+ LQ K QE+E+LTK
Sbjct: 325 QATKRLQDKEQELEQLTK 342
>ref|XP_003356719.1| PREDICTED: S phase cyclin A-associated protein in the endoplasmic
reticulum, partial [Sus scrofa].
Length = 1287
Score = 50.1 bits (118), Expect = 5e-06
Identities = 38/189 (20%), Positives = 93/189 (49%), Gaps = 10/189 (5%)
Frame = +1
Query: 472 TLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEK------TIAQMIEDEQRASM 633
TL ++++ +E + +WK++ + R+ ++E + + AE+++ + + E+E + +
Sbjct: 568 TLKLQKLLEREKDVRKWKEELLDQRRRMMEEKLLHAEFKREVQLQAIVKKAQEEEAKVNE 627
Query: 634 TSQKSFQQLSMEKEQALADLNSVERSLSDL----FRRYENLKGVLEGFKKNEEALKKCAQ 801
+ + + ++ L+ L E+ L++L RR E + E ++ + AL+ Q
Sbjct: 628 IAFINTLEAQNKRHDVLSKLKEYEQRLNELQEERQRRQEEKQARDEAVQERKRALEAERQ 687
Query: 802 DYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVESLE 981
+ + + + +A ++ +KA E+ A+ R + + E A ++E M E L+
Sbjct: 688 ARVEELLMKRKEQEARIEQQRQEKEKAREDAARERARDREERLAALTAAQQEAM--EELQ 745
Query: 982 RALQQKNQE 1008
+ +Q K+ E
Sbjct: 746 KKIQLKHDE 754
>ref|XP_001928242.1| PREDICTED: centrosomal protein of 290 kDa-like [Sus scrofa].
Length = 2481
Score = 50.1 bits (118), Expect = 5e-06
Identities = 67/326 (20%), Positives = 131/326 (40%), Gaps = 17/326 (5%)
Frame = +1
Query: 139 KVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQKPTGAEGKGME 318
K+K++E L L +DE I ++I + GH +K E + ++
Sbjct: 1662 KIKEFENMKLRLQENHEDEVKKIK--AEIEDLRGHLAQSQK-------------ESQRLK 1706
Query: 319 KEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEII- 495
E+ + E + T+ +E+ +A E + + + A +T EE I
Sbjct: 1707 SELQAQKEANSRAPTTTMRNLVERLKSQLALK-EKQQKALSRALLELRAEMTAAAEERII 1765
Query: 496 --TKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSME 669
T + EAN L +++IV + K + +ED + ++S + S
Sbjct: 1766 SATSQKEAN-------------LNVQQIVDRHTKELKSQVEDLSENILKLKESLKT-SKN 1811
Query: 670 KEQALAD-LNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK-------------CAQDY 807
+E +L D LN + L + Y+ + +G + + LK+ +
Sbjct: 1812 RENSLTDNLNDLTNELQKKQKAYDKMLREKDGIDQENDELKRQIKRLTSGLQGKPLIDNK 1871
Query: 808 LARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKAKAESAALHAGLRKEQMKVESLERA 987
+ +++ +++ + L+ E+K D E+ V+ K+ E +K Q K+E +
Sbjct: 1872 QSLIEELQKKIKKLESQLEKKADGV--EVKPVKEKSAREELIRWEEGKKWQTKIEGIRNK 1929
Query: 988 LQQKNQEIEELTKICDELIAKLGKTD 1065
L++K E+ LTK + L K D
Sbjct: 1930 LKEKEGEVCILTKQLNTLKDLFAKAD 1955
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 53,450,143
Number of extensions: 1591329
Number of successful extensions: 6403
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 6323
Number of HSP's successfully gapped: 8
Length of query: 774
Length of database: 11,343,932
Length adjustment: 107
Effective length of query: 667
Effective length of database: 8,679,953
Effective search space: 5789528651
Effective search space used: 5789528651
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001903
(2322 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 969 0.0
Sscrofa_Chr14 72 2e-09
>Sscrofa_Chr15
|| Length = 157681621
Score = 969 bits (489), Expect = 0.0
Identities = 536/548 (97%), Gaps = 3/548 (0%)
Strand = Plus / Minus
Query: 1724 gtgtttatttgtgctgctgggtcttctcccctaaagcatagtcagataagaccatctcta 1783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54864721 gtgtttatttgtgctgctgggtcttctcccctaaagcatagtcagataagaccatctcta 54864662
Query: 1784 gagaaaagcgtgtttccataaatgtaaaaccctattttgaaacagagtcctggctcagaa 1843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54864661 gagaaaagcgtgtttccataaatgtaaaaccctattttgaaacagagtcctggctcagaa 54864602
Query: 1844 ggctaacttcagaatttgggggttggagctgtgaggccctgagacttggtacctggtgtg 1903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54864601 ggctaacttcagaatttgggggttggagctgtgaggccctgagacttggtacctggtgtg 54864542
Query: 1904 acttgtcacctcagactcaggtgacatgttgagggagcctgttggcccacatgtcctgtc 1963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54864541 acttgtcacctcagactcaggtgacatgttgagggagcctgttggcccacatgtcctgtc 54864482
Query: 1964 accccagtactgggacgctcctcagcctggatgtgtagcccctttggggttagacggcca 2023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54864481 accccagtactgggacgctcctcagcctggatgtgtagcccctttggggttagacggcca 54864422
Query: 2024 agccagagtgactggctttctggaccgtggttccctcacagctggggtctggcaagtctg 2083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54864421 agccagagtgactggctttctggaccgtggttccctcacagctggggtctggcaagtctg 54864362
Query: 2084 tcctggagccatctgtctccttttgttgctacaaaatcaacattcactctctctttatat 2143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54864361 tcctggagccatctgtctccttttgttgctacaaaatcaacattcactctctctttatat 54864302
Query: 2144 ttctatttgaaatgggcaaagaaaacctcctcaattaaagtttagatggatctgtctaat 2203
||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||| ||
Sbjct: 54864301 ttctatttgaaataggcaaagaaaacctcctcatttaaggtttagatggatctgtcttat 54864242
Query: 2204 gacccccctagcatttat-aggtg-agccatggntggatttttgcaaatgtgaag-atta 2260
|||||| |||||| |||| ||||| ||| |||| ||||||||||||||||||| | ||||
Sbjct: 54864241 gaccccactagcaattatgaggtgaagcaatggttggatttttgcaaatgtgatgcatta 54864182
Query: 2261 ttcttcag 2268
||||||||
Sbjct: 54864181 ttcttcag 54864174
Score = 684 bits (345), Expect = 0.0
Identities = 365/375 (97%)
Strand = Plus / Minus
Query: 1201 cttcacgaaagcacatgcctactgctgcctgtcccgctttgcttttgaagcaacagcccg 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54865244 cttcacgaaagcacatgcctactgctgcctgtcccgctttgcttttgaagcaacagcccg 54865185
Query: 1261 gagggagctctggagtttgcacaaccaccaaaggaggggctcgcctggccatcccgtctc 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54865184 gagggagctctggagtttgcacaaccaccaaaggaggggctcgcctggccatcccgtctc 54865125
Query: 1321 ggttagacgggctgccaaggccactgggagttctccatctttagttggatttaaagttgt 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54865124 ggttagacgggctgccaaggccactgggagttctccatctttagttggatttaaagttgt 54865065
Query: 1381 ctttactttccccaagtgcattcagtttatgagtttgtggccacctttgggaccctctcc 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54865064 ctttactttccccaagtgcattcagtttatgagtttgtggccacctttgggaccctctcc 54865005
Query: 1441 tgtccaccacctgannnnnnnnnnaattcatcttttaaatttcattctcagtatgagtgg 1500
|||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 54865004 tgtccaccacctgattttttttttaattcatcttttaaatttcattctcagtatgagtgg 54864945
Query: 1501 ttttatttgaggagataaattggcttcttgttacttccagcttataggcaagaagggact 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54864944 ttttatttgaggagataaattggcttcttgttacttccagcttataggcaagaagggact 54864885
Query: 1561 ctgatacccatttat 1575
|||||||||||||||
Sbjct: 54864884 ctgatacccatttat 54864870
Score = 325 bits (164), Expect = 6e-86
Identities = 164/164 (100%)
Strand = Plus / Minus
Query: 998 agaaccaagaaatcgaagaactgacgaaaatctgtgatgagctgattgcaaagctgggaa 1057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54865446 agaaccaagaaatcgaagaactgacgaaaatctgtgatgagctgattgcaaagctgggaa 54865387
Query: 1058 agacagactgagtaccccggttagctcagcagatctgcatttggctgcttctctcgtgac 1117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54865386 agacagactgagtaccccggttagctcagcagatctgcatttggctgcttctctcgtgac 54865327
Query: 1118 catgattatcttgccttatccaggaataattgcccctttgcaga 1161
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54865326 catgattatcttgccttatccaggaataattgcccctttgcaga 54865283
Score = 321 bits (162), Expect = 1e-84
Identities = 162/162 (100%)
Strand = Plus / Minus
Query: 610 gaagatgaacagagggcgagtatgacctcccagaagagcttccagcagctgagcatggag 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54871683 gaagatgaacagagggcgagtatgacctcccagaagagcttccagcagctgagcatggag 54871624
Query: 670 aaggagcaggcgctggccgacctcaactccgtggagaggtccctctccgacctcttcagg 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54871623 aaggagcaggcgctggccgacctcaactccgtggagaggtccctctccgacctcttcagg 54871564
Query: 730 cgatatgagaacctgaaaggcgtcctggaggggttcaagaag 771
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54871563 cgatatgagaacctgaaaggcgtcctggaggggttcaagaag 54871522
Score = 256 bits (129), Expect = 5e-65
Identities = 129/129 (100%)
Strand = Plus / Plus
Query: 1 ggcgaaccgcggagcaaggacaggcgcagccggagcgccgcgctccgagccatgggaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55008706 ggcgaaccgcggagcaaggacaggcgcagccggagcgccgcgctccgagccatgggaggc 55008765
Query: 61 gcccactctcagagcccgaggggccgggagccggccacggaaaggcccccgagaccccat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55008766 gcccactctcagagcccgaggggccgggagccggccacggaaaggcccccgagaccccat 55008825
Query: 121 gagaacgcg 129
|||||||||
Sbjct: 55008826 gagaacgcg 55008834
Score = 248 bits (125), Expect = 1e-62
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 187 caggatgaaggagcagtgatctcccagatttctgacatttccaacagggatggccacgca 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55069303 caggatgaaggagcagtgatctcccagatttctgacatttccaacagggatggccacgca 55069362
Query: 247 acagatgaggagaagctggcgtccacgacctgcggtcagaaacccaccggggccgagggg 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55069363 acagatgaggagaagctggcgtccacgacctgcggtcagaaacccaccggggccgagggg 55069422
Query: 307 aaagg 311
|||||
Sbjct: 55069423 aaagg 55069427
Score = 240 bits (121), Expect = 3e-60
Identities = 121/121 (100%)
Strand = Plus / Minus
Query: 879 agccaatgaagagattgctcaggttcgaacaaaagccaaggctgagagcgctgctctgca 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54866935 agccaatgaagagattgctcaggttcgaacaaaagccaaggctgagagcgctgctctgca 54866876
Query: 939 tgcggggctccggaaagagcagatgaaggtggagtccctggagagggccctgcagcagaa 998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54866875 tgcggggctccggaaagagcagatgaaggtggagtccctggagagggccctgcagcagaa 54866816
Query: 999 g 999
|
Sbjct: 54866815 g 54866815
Score = 232 bits (117), Expect = 7e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 364 ggaaccttggaggccccgatggagaaggctcctgtgtccgtggcctgcggaggggagagc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55079996 ggaaccttggaggccccgatggagaaggctcctgtgtccgtggcctgcggaggggagagc 55080055
Query: 424 cccctggacggcatctgcctcagtgaatcagacaagaccgccgtgctcaccctgatc 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55080056 cccctggacggcatctgcctcagtgaatcagacaagaccgccgtgctcaccctgatc 55080112
Score = 216 bits (109), Expect = 4e-53
Identities = 109/109 (100%)
Strand = Plus / Minus
Query: 770 agaatgaagaagccttgaaaaaatgtgctcaggattacttagccagagttaaacaagagg 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54871012 agaatgaagaagccttgaaaaaatgtgctcaggattacttagccagagttaaacaagagg 54870953
Query: 830 agcagcggtaccaggccctgaaaatccatgcggaagaaaaactagacaa 878
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54870952 agcagcggtaccaggccctgaaaatccatgcggaagaaaaactagacaa 54870904
Score = 159 bits (80), Expect = 8e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 488 agataatcactaaagagattgaagcaaatgaatggaagaaaaaatatgaagaaacccgac 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54875357 agataatcactaaagagattgaagcaaatgaatggaagaaaaaatatgaagaaacccgac 54875298
Query: 548 aagaagtcttggagatgagg 567
||||||||||||||||||||
Sbjct: 54875297 aagaagtcttggagatgagg 54875278
Score = 115 bits (58), Expect = 1e-22
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 129 gagtggctgtaaggtgaagaaatatgaagcccagtctcttgctttggatgggtgttctca 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 55066576 gagtggctgtaaggtgaagaaatatgaagcccagtctcttgctttggatgggtgttcgca 55066635
Query: 189 gg 190
||
Sbjct: 55066636 gg 55066637
Score = 111 bits (56), Expect = 2e-21
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 309 aggcatggagaaagagatgagcctgaagatggagaaggatggatccaccatgcccg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55072342 aggcatggagaaagagatgagcctgaagatggagaaggatggatccaccatgcccg 55072397
Score = 91.7 bits (46), Expect = 2e-15
Identities = 46/46 (100%)
Strand = Plus / Minus
Query: 565 aggaaaattgtggccgagtatgagaagaccattgcccaaatgatcg 610
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54873231 aggaaaattgtggccgagtatgagaagaccattgcccaaatgatcg 54873186
>Sscrofa_Chr14
|| Length = 153851969
Score = 71.9 bits (36), Expect = 2e-09
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 565 aggaaaattgtggccgagtatgagaagaccattgcccaaatgat 608
|||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 143120522 aggaaaatagtggccgagtatgagaagaccatcgcccaaatgat 143120565
Score = 63.9 bits (32), Expect = 4e-07
Identities = 92/112 (82%)
Strand = Plus / Plus
Query: 650 tccagcagctgagcatggagaaggagcaggcgctggccgacctcaactccgtggagaggt 709
||||||||||| | |||||||||| || || ||||||||||| ||||| ||||||| ||
Sbjct: 143126946 tccagcagctggtcctggagaaggaacaagccctggccgacctgaactcagtggagaagt 143127005
Query: 710 ccctctccgacctcttcaggcgatatgagaacctgaaaggcgtcctggaggg 761
| || |||| ||||||||| |||| ||||| |||| | |||||||||||
Sbjct: 143127006 ctctggccgatctcttcaggagatacgagaagatgaaggaggtcctggaggg 143127057
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 66,478,885
Number of extensions: 447
Number of successful extensions: 447
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 446
Number of HSP's successfully gapped: 16
Length of query: 2322
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2300
Effective length of database: 2,808,408,574
Effective search space: 6459339720200
Effective search space used: 6459339720200
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)