Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001904
(1573 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002698763.1| PREDICTED: transforming, acidic coiled-coil ... 231 1e-60
Alignment gi|XP_583551.3| PREDICTED: transforming, acidic coiled-coil con... 231 1e-60
Alignment gi|XP_002703282.1| PREDICTED: transforming, acidic coiled-coil ... 65 1e-16
>ref|XP_002698763.1| PREDICTED: transforming, acidic coiled-coil containing protein 1 [Bos
taurus].
Length = 742
Score = 231 bits (589), Expect = 1e-60
Identities = 125/175 (71%), Positives = 131/175 (74%), Gaps = 29/175 (16%)
Frame = +3
Query: 984 ETKSLSFRSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQ 1163
+ KS SGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST+ Q
Sbjct: 394 KAKSRLITSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTSSVQ 453
Query: 1164 KPTGAEGKG-----------------------------MEKEMSLKMEKDGSTMPGTLEA 1256
KPTGAEGKG EK+ KMEKDGST+P LE+
Sbjct: 454 KPTGAEGKGEPEDDLEYFECSNVPVSAINHAFSSSEAGSEKDPCQKMEKDGSTVPALLES 513
Query: 1257 PMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEET 1421
P+EK PVSVACG ESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEET
Sbjct: 514 PVEKTPVSVACGVESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEET 568
Score = 82.0 bits (201), Expect = 1e-15
Identities = 43/65 (66%), Positives = 49/65 (75%)
Frame = +1
Query: 1378 KRLKQMNGRKNMKKPRQEVLEMRKIVAEYEKTIAQMIEDEQRASYDLPKSFHHLNMEKEQ 1557
K ++ +K ++ RQEVLEMRKIVAEYEKTIAQMIEDEQR S KSF L MEKEQ
Sbjct: 554 KEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRTSMSSQKSFQQLTMEKEQ 613
Query: 1558 ALANL 1572
ALA+L
Sbjct: 614 ALADL 618
Score = 64.3 bits (155), Expect = 3e-10
Identities = 32/55 (58%), Positives = 33/55 (60%)
Frame = +3
Query: 846 MAFSPWQILSPVQWAKWTWSAVRXXXXXXXXXXXXXXXXXXXXXQAETKSLSFRS 1010
MAFSPWQILSPVQWA+WTWSAVR QAETKSLSF S
Sbjct: 1 MAFSPWQILSPVQWARWTWSAVRGGGAGEDEAGGPEGYPEDEDSQAETKSLSFSS 55
>ref|XP_583551.3| PREDICTED: transforming, acidic coiled-coil containing protein 1 [Bos
taurus].
Length = 666
Score = 231 bits (589), Expect = 1e-60
Identities = 125/175 (71%), Positives = 131/175 (74%), Gaps = 29/175 (16%)
Frame = +3
Query: 984 ETKSLSFRSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQ 1163
+ KS SGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST+ Q
Sbjct: 318 KAKSRLITSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTSSVQ 377
Query: 1164 KPTGAEGKG-----------------------------MEKEMSLKMEKDGSTMPGTLEA 1256
KPTGAEGKG EK+ KMEKDGST+P LE+
Sbjct: 378 KPTGAEGKGEPEDDLEYFECSNVPVSAINHAFSSSEAGSEKDPCQKMEKDGSTVPALLES 437
Query: 1257 PMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEET 1421
P+EK PVSVACG ESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEET
Sbjct: 438 PVEKTPVSVACGVESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEET 492
Score = 82.0 bits (201), Expect = 1e-15
Identities = 43/65 (66%), Positives = 49/65 (75%)
Frame = +1
Query: 1378 KRLKQMNGRKNMKKPRQEVLEMRKIVAEYEKTIAQMIEDEQRASYDLPKSFHHLNMEKEQ 1557
K ++ +K ++ RQEVLEMRKIVAEYEKTIAQMIEDEQR S KSF L MEKEQ
Sbjct: 478 KEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRTSMSSQKSFQQLTMEKEQ 537
Query: 1558 ALANL 1572
ALA+L
Sbjct: 538 ALADL 542
>ref|XP_002703282.1| PREDICTED: transforming, acidic coiled-coil containing protein 2 [Bos
taurus].
Length = 2893
Score = 64.7 bits (156), Expect(2) = 1e-16
Identities = 34/53 (64%), Positives = 42/53 (79%)
Frame = +1
Query: 1414 KKPRQEVLEMRKIVAEYEKTIAQMIEDEQRASYDLPKSFHHLNMEKEQALANL 1572
++ R+EV+EMRKIVAEYEKTIAQMIEDEQR ++ L +EKEQALA+L
Sbjct: 2718 EESRREVMEMRKIVAEYEKTIAQMIEDEQREKSVSHQTVQQLVLEKEQALADL 2770
Score = 40.8 bits (94), Expect(2) = 1e-16
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = +3
Query: 1311 GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEET 1421
G+ + D + L + R EIITKE E +EWK KYEE+
Sbjct: 2684 GLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEES 2720
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 51,242,278
Number of extensions: 1478333
Number of successful extensions: 7142
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7120
Number of HSP's successfully gapped: 7
Length of query: 524
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 417
Effective length of database: 14,140,958
Effective search space: 5896779486
Effective search space used: 5896779486
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001904
(1573 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_856593.1| PREDICTED: similar to transforming acidic coile... 303 2e-82
Alignment gi|XP_856634.1| PREDICTED: similar to transforming, acidic coil... 288 1e-77
Alignment gi|XP_532800.2| PREDICTED: similar to transforming, acidic coil... 244 2e-64
Alignment gi|XP_848665.1| PREDICTED: similar to transforming, acidic coil... 228 9e-60
Alignment gi|XP_535042.2| PREDICTED: similar to transforming, acidic coil... 65 2e-16
>ref|XP_856593.1| PREDICTED: similar to transforming acidic coiled-coil containing
protein 1 short isoform isoform 3 [Canis familiaris].
Length = 366
Score = 303 bits (777), Expect = 2e-82
Identities = 156/192 (81%), Positives = 159/192 (82%)
Frame = +3
Query: 846 MAFSPWQILSPVQWAKWTWSAVRXXXXXXXXXXXXXXXXXXXXXQAETKSLSFRSGCKVK 1025
MAFSPWQILSPVQWAKWTWSAVR QAETKSLSFRSGCKVK
Sbjct: 1 MAFSPWQILSPVQWAKWTWSAVRGGGAGEEEAGGPEGDPEDEDSQAETKSLSFRSGCKVK 60
Query: 1026 KYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQKPTGAEGKGMEKEM 1205
KYE QSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST+ GQK GAE KG+EKEM
Sbjct: 61 KYETQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTSSGQKSAGAEVKGIEKEM 120
Query: 1206 SLKMEKDGSTMPGTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEI 1385
KMEKDGS M G LE+ MEKAPVSVAC GESPLDGICLSESDKTAVLTLIREEIITKEI
Sbjct: 121 CQKMEKDGSAMTGLLESSMEKAPVSVACEGESPLDGICLSESDKTAVLTLIREEIITKEI 180
Query: 1386 EANEWKKKYEET 1421
EANEWKKKYEET
Sbjct: 181 EANEWKKKYEET 192
Score = 81.6 bits (200), Expect = 2e-15
Identities = 43/65 (66%), Positives = 49/65 (75%)
Frame = +1
Query: 1378 KRLKQMNGRKNMKKPRQEVLEMRKIVAEYEKTIAQMIEDEQRASYDLPKSFHHLNMEKEQ 1557
K ++ +K ++ RQEVLEMRKIVAEYEKTIAQMIEDEQR S KSF L MEKEQ
Sbjct: 178 KEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRTSMTSQKSFQQLTMEKEQ 237
Query: 1558 ALANL 1572
ALA+L
Sbjct: 238 ALADL 242
>ref|XP_856634.1| PREDICTED: similar to transforming, acidic coiled-coil containing
protein 1 isoform 4 [Canis familiaris].
Length = 395
Score = 288 bits (737), Expect = 1e-77
Identities = 156/221 (70%), Positives = 159/221 (71%), Gaps = 29/221 (13%)
Frame = +3
Query: 846 MAFSPWQILSPVQWAKWTWSAVRXXXXXXXXXXXXXXXXXXXXXQAETKSLSFRSGCKVK 1025
MAFSPWQILSPVQWAKWTWSAVR QAETKSLSFRSGCKVK
Sbjct: 1 MAFSPWQILSPVQWAKWTWSAVRGGGAGEEEAGGPEGDPEDEDSQAETKSLSFRSGCKVK 60
Query: 1026 KYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQKPTGAEGKG----- 1190
KYE QSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST+ GQK GAE KG
Sbjct: 61 KYETQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTSSGQKSAGAEVKGEPEED 120
Query: 1191 ------------------------MEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGE 1298
+EKEM KMEKDGS M G LE+ MEKAPVSVAC GE
Sbjct: 121 LEYFECSNVPVSTINHAFSSSEAGIEKEMCQKMEKDGSAMTGLLESSMEKAPVSVACEGE 180
Query: 1299 SPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEET 1421
SPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEET
Sbjct: 181 SPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEET 221
Score = 81.6 bits (200), Expect = 2e-15
Identities = 43/65 (66%), Positives = 49/65 (75%)
Frame = +1
Query: 1378 KRLKQMNGRKNMKKPRQEVLEMRKIVAEYEKTIAQMIEDEQRASYDLPKSFHHLNMEKEQ 1557
K ++ +K ++ RQEVLEMRKIVAEYEKTIAQMIEDEQR S KSF L MEKEQ
Sbjct: 207 KEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRTSMTSQKSFQQLTMEKEQ 266
Query: 1558 ALANL 1572
ALA+L
Sbjct: 267 ALADL 271
>ref|XP_532800.2| PREDICTED: similar to transforming, acidic coiled-coil containing
protein 1 isoform 1 [Canis familiaris].
Length = 771
Score = 244 bits (622), Expect = 2e-64
Identities = 125/146 (85%), Positives = 129/146 (88%)
Frame = +3
Query: 984 ETKSLSFRSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQ 1163
+ KS SGCKVKKYE QSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST+ GQ
Sbjct: 452 KAKSRLITSGCKVKKYETQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTSSGQ 511
Query: 1164 KPTGAEGKGMEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGESPLDGICLSESDKTA 1343
K GAE KG+EKEM KMEKDGS M G LE+ MEKAPVSVAC GESPLDGICLSESDKTA
Sbjct: 512 KSAGAEVKGIEKEMCQKMEKDGSAMTGLLESSMEKAPVSVACEGESPLDGICLSESDKTA 571
Query: 1344 VLTLIREEIITKEIEANEWKKKYEET 1421
VLTLIREEIITKEIEANEWKKKYEET
Sbjct: 572 VLTLIREEIITKEIEANEWKKKYEET 597
Score = 81.6 bits (200), Expect = 2e-15
Identities = 43/65 (66%), Positives = 49/65 (75%)
Frame = +1
Query: 1378 KRLKQMNGRKNMKKPRQEVLEMRKIVAEYEKTIAQMIEDEQRASYDLPKSFHHLNMEKEQ 1557
K ++ +K ++ RQEVLEMRKIVAEYEKTIAQMIEDEQR S KSF L MEKEQ
Sbjct: 583 KEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRTSMTSQKSFQQLTMEKEQ 642
Query: 1558 ALANL 1572
ALA+L
Sbjct: 643 ALADL 647
Score = 65.5 bits (158), Expect = 1e-10
Identities = 33/55 (60%), Positives = 33/55 (60%)
Frame = +3
Query: 846 MAFSPWQILSPVQWAKWTWSAVRXXXXXXXXXXXXXXXXXXXXXQAETKSLSFRS 1010
MAFSPWQILSPVQWAKWTWSAVR QAETKSLSF S
Sbjct: 1 MAFSPWQILSPVQWAKWTWSAVRGGGAGEEEAGGPEGDPEDEDSQAETKSLSFSS 55
>ref|XP_848665.1| PREDICTED: similar to transforming, acidic coiled-coil containing
protein 1 isoform 2 [Canis familiaris].
Length = 800
Score = 228 bits (582), Expect = 9e-60
Identities = 125/175 (71%), Positives = 129/175 (73%), Gaps = 29/175 (16%)
Frame = +3
Query: 984 ETKSLSFRSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQ 1163
+ KS SGCKVKKYE QSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST+ GQ
Sbjct: 452 KAKSRLITSGCKVKKYETQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTSSGQ 511
Query: 1164 KPTGAEGKG-----------------------------MEKEMSLKMEKDGSTMPGTLEA 1256
K GAE KG +EKEM KMEKDGS M G LE+
Sbjct: 512 KSAGAEVKGEPEEDLEYFECSNVPVSTINHAFSSSEAGIEKEMCQKMEKDGSAMTGLLES 571
Query: 1257 PMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEET 1421
MEKAPVSVAC GESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEET
Sbjct: 572 SMEKAPVSVACEGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEET 626
Score = 81.6 bits (200), Expect = 2e-15
Identities = 43/65 (66%), Positives = 49/65 (75%)
Frame = +1
Query: 1378 KRLKQMNGRKNMKKPRQEVLEMRKIVAEYEKTIAQMIEDEQRASYDLPKSFHHLNMEKEQ 1557
K ++ +K ++ RQEVLEMRKIVAEYEKTIAQMIEDEQR S KSF L MEKEQ
Sbjct: 612 KEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRTSMTSQKSFQQLTMEKEQ 671
Query: 1558 ALANL 1572
ALA+L
Sbjct: 672 ALADL 676
Score = 65.5 bits (158), Expect = 1e-10
Identities = 33/55 (60%), Positives = 33/55 (60%)
Frame = +3
Query: 846 MAFSPWQILSPVQWAKWTWSAVRXXXXXXXXXXXXXXXXXXXXXQAETKSLSFRS 1010
MAFSPWQILSPVQWAKWTWSAVR QAETKSLSF S
Sbjct: 1 MAFSPWQILSPVQWAKWTWSAVRGGGAGEEEAGGPEGDPEDEDSQAETKSLSFSS 55
>ref|XP_535042.2| PREDICTED: similar to transforming, acidic coiled-coil containing
protein 2 isoform a [Canis familiaris].
Length = 2885
Score = 64.7 bits (156), Expect(2) = 2e-16
Identities = 34/53 (64%), Positives = 42/53 (79%)
Frame = +1
Query: 1414 KKPRQEVLEMRKIVAEYEKTIAQMIEDEQRASYDLPKSFHHLNMEKEQALANL 1572
++ R+EV+EMRKIVAEYEKTIAQMIEDEQR ++ L +EKEQALA+L
Sbjct: 2710 EESRREVMEMRKIVAEYEKTIAQMIEDEQREKSVSHQTVQQLVLEKEQALADL 2762
Score = 40.8 bits (94), Expect(2) = 2e-16
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = +3
Query: 1311 GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEET 1421
G+ + D + L + R EIITKE E +EWK KYEE+
Sbjct: 2676 GLLFQQPDLDSALRIARAEIITKEREVSEWKDKYEES 2712
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 52,966,913
Number of extensions: 1384254
Number of successful extensions: 8035
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 8010
Number of HSP's successfully gapped: 12
Length of query: 524
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 417
Effective length of database: 15,307,552
Effective search space: 6383249184
Effective search space used: 6383249184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001904
(1573 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001116296.1| transforming acidic coiled-coil-containing p... 281 9e-76
Alignment gi|NP_001139688.1| transforming acidic coiled-coil-containing p... 222 9e-58
Alignment gi|NP_006274.2| transforming acidic coiled-coil-containing prot... 222 9e-58
Alignment gi|NP_996744.2| transforming acidic coiled-coil-containing prot... 65 1e-16
Alignment gi|NP_996743.1| transforming acidic coiled-coil-containing prot... 65 2e-16
Alignment gi|NP_008928.1| transforming acidic coiled-coil-containing prot... 65 2e-16
Alignment gi|NP_996742.1| transforming acidic coiled-coil-containing prot... 65 2e-16
>ref|NP_001116296.1| transforming acidic coiled-coil-containing protein 1 isoform 2 [Homo
sapiens].
Length = 395
Score = 281 bits (720), Expect = 9e-76
Identities = 151/221 (68%), Positives = 159/221 (71%), Gaps = 29/221 (13%)
Frame = +3
Query: 846 MAFSPWQILSPVQWAKWTWSAVRXXXXXXXXXXXXXXXXXXXXXQAETKSLSFRSGCKVK 1025
MAFSPWQILSPVQWAKWTWSAVR QAETKSLSFRSGCKVK
Sbjct: 1 MAFSPWQILSPVQWAKWTWSAVRGGAAGEDEAGGPEGDPEEEDSQAETKSLSFRSGCKVK 60
Query: 1026 KYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQKPTGAEGKG----- 1190
K+E QSLALD CS+DEGAVISQISDISNRDGHATDEEKLAST+CGQK GAE KG
Sbjct: 61 KHETQSLALDACSRDEGAVISQISDISNRDGHATDEEKLASTSCGQKSAGAEVKGEPEED 120
Query: 1191 ------------------------MEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGE 1298
+EKE KME+DGST+ G LE+ EKAPVSV+CGGE
Sbjct: 121 LEYFECSNVPVSTINHAFSSSEAGIEKETCQKMEEDGSTVLGLLESSAEKAPVSVSCGGE 180
Query: 1299 SPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEET 1421
SPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEET
Sbjct: 181 SPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEET 221
Score = 81.6 bits (200), Expect = 2e-15
Identities = 43/65 (66%), Positives = 49/65 (75%)
Frame = +1
Query: 1378 KRLKQMNGRKNMKKPRQEVLEMRKIVAEYEKTIAQMIEDEQRASYDLPKSFHHLNMEKEQ 1557
K ++ +K ++ RQEVLEMRKIVAEYEKTIAQMIEDEQR S KSF L MEKEQ
Sbjct: 207 KEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRTSMTSQKSFQQLTMEKEQ 266
Query: 1558 ALANL 1572
ALA+L
Sbjct: 267 ALADL 271
>ref|NP_001139688.1| transforming acidic coiled-coil-containing protein 1 isoform 3 [Homo
sapiens].
Length = 610
Score = 222 bits (565), Expect = 9e-58
Identities = 120/175 (68%), Positives = 129/175 (73%), Gaps = 29/175 (16%)
Frame = +3
Query: 984 ETKSLSFRSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQ 1163
+ KS SGCKVKK+E QSLALD CS+DEGAVISQISDISNRDGHATDEEKLAST+CGQ
Sbjct: 262 KAKSRLITSGCKVKKHETQSLALDACSRDEGAVISQISDISNRDGHATDEEKLASTSCGQ 321
Query: 1164 KPTGAEGKG-----------------------------MEKEMSLKMEKDGSTMPGTLEA 1256
K GAE KG +EKE KME+DGST+ G LE+
Sbjct: 322 KSAGAEVKGEPEEDLEYFECSNVPVSTINHAFSSSEAGIEKETCQKMEEDGSTVLGLLES 381
Query: 1257 PMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEET 1421
EKAPVSV+CGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEET
Sbjct: 382 SAEKAPVSVSCGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEET 436
Score = 81.6 bits (200), Expect = 2e-15
Identities = 43/65 (66%), Positives = 49/65 (75%)
Frame = +1
Query: 1378 KRLKQMNGRKNMKKPRQEVLEMRKIVAEYEKTIAQMIEDEQRASYDLPKSFHHLNMEKEQ 1557
K ++ +K ++ RQEVLEMRKIVAEYEKTIAQMIEDEQR S KSF L MEKEQ
Sbjct: 422 KEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRTSMTSQKSFQQLTMEKEQ 481
Query: 1558 ALANL 1572
ALA+L
Sbjct: 482 ALADL 486
>ref|NP_006274.2| transforming acidic coiled-coil-containing protein 1 isoform 1 [Homo
sapiens].
Length = 805
Score = 222 bits (565), Expect = 9e-58
Identities = 120/175 (68%), Positives = 129/175 (73%), Gaps = 29/175 (16%)
Frame = +3
Query: 984 ETKSLSFRSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQ 1163
+ KS SGCKVKK+E QSLALD CS+DEGAVISQISDISNRDGHATDEEKLAST+CGQ
Sbjct: 457 KAKSRLITSGCKVKKHETQSLALDACSRDEGAVISQISDISNRDGHATDEEKLASTSCGQ 516
Query: 1164 KPTGAEGKG-----------------------------MEKEMSLKMEKDGSTMPGTLEA 1256
K GAE KG +EKE KME+DGST+ G LE+
Sbjct: 517 KSAGAEVKGEPEEDLEYFECSNVPVSTINHAFSSSEAGIEKETCQKMEEDGSTVLGLLES 576
Query: 1257 PMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEET 1421
EKAPVSV+CGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEET
Sbjct: 577 SAEKAPVSVSCGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEET 631
Score = 81.6 bits (200), Expect = 2e-15
Identities = 43/65 (66%), Positives = 49/65 (75%)
Frame = +1
Query: 1378 KRLKQMNGRKNMKKPRQEVLEMRKIVAEYEKTIAQMIEDEQRASYDLPKSFHHLNMEKEQ 1557
K ++ +K ++ RQEVLEMRKIVAEYEKTIAQMIEDEQR S KSF L MEKEQ
Sbjct: 617 KEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRTSMTSQKSFQQLTMEKEQ 676
Query: 1558 ALANL 1572
ALA+L
Sbjct: 677 ALADL 681
Score = 65.5 bits (158), Expect = 1e-10
Identities = 33/55 (60%), Positives = 33/55 (60%)
Frame = +3
Query: 846 MAFSPWQILSPVQWAKWTWSAVRXXXXXXXXXXXXXXXXXXXXXQAETKSLSFRS 1010
MAFSPWQILSPVQWAKWTWSAVR QAETKSLSF S
Sbjct: 1 MAFSPWQILSPVQWAKWTWSAVRGGAAGEDEAGGPEGDPEEEDSQAETKSLSFSS 55
>ref|NP_996744.2| transforming acidic coiled-coil-containing protein 2 isoform a [Homo
sapiens].
Length = 2948
Score = 64.7 bits (156), Expect(2) = 1e-16
Identities = 34/53 (64%), Positives = 42/53 (79%)
Frame = +1
Query: 1414 KKPRQEVLEMRKIVAEYEKTIAQMIEDEQRASYDLPKSFHHLNMEKEQALANL 1572
++ R+EV+EMRKIVAEYEKTIAQMIEDEQR ++ L +EKEQALA+L
Sbjct: 2773 EESRREVMEMRKIVAEYEKTIAQMIEDEQREKSVSHQTVQQLVLEKEQALADL 2825
Score = 40.8 bits (94), Expect(2) = 1e-16
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = +3
Query: 1311 GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEET 1421
G+ + D + L + R EIITKE E +EWK KYEE+
Sbjct: 2739 GLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEES 2775
>ref|NP_996743.1| transforming acidic coiled-coil-containing protein 2 isoform b [Homo
sapiens].
Length = 1094
Score = 64.7 bits (156), Expect(2) = 2e-16
Identities = 34/53 (64%), Positives = 42/53 (79%)
Frame = +1
Query: 1414 KKPRQEVLEMRKIVAEYEKTIAQMIEDEQRASYDLPKSFHHLNMEKEQALANL 1572
++ R+EV+EMRKIVAEYEKTIAQMIEDEQR ++ L +EKEQALA+L
Sbjct: 919 EESRREVMEMRKIVAEYEKTIAQMIEDEQREKSVSHQTVQQLVLEKEQALADL 971
Score = 40.8 bits (94), Expect(2) = 2e-16
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = +3
Query: 1311 GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEET 1421
G+ + D + L + R EIITKE E +EWK KYEE+
Sbjct: 885 GLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEES 921
>ref|NP_008928.1| transforming acidic coiled-coil-containing protein 2 isoform d [Homo
sapiens].
Length = 1026
Score = 64.7 bits (156), Expect(2) = 2e-16
Identities = 34/53 (64%), Positives = 42/53 (79%)
Frame = +1
Query: 1414 KKPRQEVLEMRKIVAEYEKTIAQMIEDEQRASYDLPKSFHHLNMEKEQALANL 1572
++ R+EV+EMRKIVAEYEKTIAQMIEDEQR ++ L +EKEQALA+L
Sbjct: 851 EESRREVMEMRKIVAEYEKTIAQMIEDEQREKSVSHQTVQQLVLEKEQALADL 903
Score = 40.8 bits (94), Expect(2) = 2e-16
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = +3
Query: 1311 GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEET 1421
G+ + D + L + R EIITKE E +EWK KYEE+
Sbjct: 817 GLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEES 853
>ref|NP_996742.1| transforming acidic coiled-coil-containing protein 2 isoform c [Homo
sapiens].
Length = 996
Score = 64.7 bits (156), Expect(2) = 2e-16
Identities = 34/53 (64%), Positives = 42/53 (79%)
Frame = +1
Query: 1414 KKPRQEVLEMRKIVAEYEKTIAQMIEDEQRASYDLPKSFHHLNMEKEQALANL 1572
++ R+EV+EMRKIVAEYEKTIAQMIEDEQR ++ L +EKEQALA+L
Sbjct: 821 EESRREVMEMRKIVAEYEKTIAQMIEDEQREKSVSHQTVQQLVLEKEQALADL 873
Score = 40.8 bits (94), Expect(2) = 2e-16
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = +3
Query: 1311 GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEET 1421
G+ + D + L + R EIITKE E +EWK KYEE+
Sbjct: 787 GLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEES 823
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 51,402,168
Number of extensions: 1317677
Number of successful extensions: 6682
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 6664
Number of HSP's successfully gapped: 15
Length of query: 524
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 417
Effective length of database: 14,770,016
Effective search space: 6159096672
Effective search space used: 6159096672
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001904
(1573 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_955355.1| transforming acidic coiled-coil-containing prot... 271 8e-73
Alignment gi|NP_796063.3| transforming acidic coiled-coil-containing prot... 216 3e-56
Alignment gi|NP_001004468.1| transforming acidic coiled-coil-containing p... 65 1e-15
Alignment gi|NP_996738.2| transforming acidic coiled-coil-containing prot... 65 1e-15
Alignment gi|NP_067289.2| transforming acidic coiled-coil-containing prot... 65 1e-15
>ref|NP_955355.1| transforming acidic coiled-coil-containing protein 1 short isoform
[Mus musculus].
Length = 368
Score = 271 bits (694), Expect = 8e-73
Identities = 144/194 (74%), Positives = 152/194 (78%), Gaps = 2/194 (1%)
Frame = +3
Query: 846 MAFSPWQILSPVQWAKWTWSAVRXXXXXXXXXXXXXXXXXXXXX-QAETKSLSFRSGCKV 1022
MAFSPWQILSPVQWAKWTWSAVR QAETKSLSFRSGCKV
Sbjct: 1 MAFSPWQILSPVQWAKWTWSAVRGSGAGEDEAGGPEGDPEEEEDSQAETKSLSFRSGCKV 60
Query: 1023 KKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTT-CGQKPTGAEGKGMEK 1199
KKYEAQ L LD CSQDEGAVIS+IS+I NRDGHATDEEKLAST+ C QK GA KG+EK
Sbjct: 61 KKYEAQPLDLDACSQDEGAVISKISEIPNRDGHATDEEKLASTSSCAQKSAGAGVKGIEK 120
Query: 1200 EMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIITK 1379
E KMEK+ + G LE+ EKAPVSVACGGESPLDGICLSE+DKTAVLTLIREEIITK
Sbjct: 121 ETCQKMEKEELAVHGLLESSSEKAPVSVACGGESPLDGICLSEADKTAVLTLIREEIITK 180
Query: 1380 EIEANEWKKKYEET 1421
EIEANEWKKKYEET
Sbjct: 181 EIEANEWKKKYEET 194
Score = 80.9 bits (198), Expect = 3e-15
Identities = 42/65 (64%), Positives = 49/65 (75%)
Frame = +1
Query: 1378 KRLKQMNGRKNMKKPRQEVLEMRKIVAEYEKTIAQMIEDEQRASYDLPKSFHHLNMEKEQ 1557
K ++ +K ++ R+EVLEMRKIVAEYEKTIAQMIEDEQR S KSF L MEKEQ
Sbjct: 180 KEIEANEWKKKYEETREEVLEMRKIVAEYEKTIAQMIEDEQRTSMSSQKSFQQLTMEKEQ 239
Query: 1558 ALANL 1572
ALA+L
Sbjct: 240 ALADL 244
>ref|NP_796063.3| transforming acidic coiled-coil-containing protein 1 long isoform
[Mus musculus].
Length = 776
Score = 216 bits (551), Expect = 3e-56
Identities = 113/147 (76%), Positives = 122/147 (82%), Gaps = 1/147 (0%)
Frame = +3
Query: 984 ETKSLSFRSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTT-CG 1160
+ KS SGCKVKKYEAQ L LD CSQDEGAVIS+IS+I NRDGHATDEEKLAST+ C
Sbjct: 456 KAKSRLITSGCKVKKYEAQPLDLDACSQDEGAVISKISEIPNRDGHATDEEKLASTSSCA 515
Query: 1161 QKPTGAEGKGMEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGESPLDGICLSESDKT 1340
QK GA KG+EKE KMEK+ + G LE+ EKAPVSVACGGESPLDGICLSE+DKT
Sbjct: 516 QKSAGAGVKGIEKETCQKMEKEELAVHGLLESSSEKAPVSVACGGESPLDGICLSEADKT 575
Query: 1341 AVLTLIREEIITKEIEANEWKKKYEET 1421
AVLTLIREEIITKEIEANEWKKKYEET
Sbjct: 576 AVLTLIREEIITKEIEANEWKKKYEET 602
Score = 80.9 bits (198), Expect = 3e-15
Identities = 42/65 (64%), Positives = 49/65 (75%)
Frame = +1
Query: 1378 KRLKQMNGRKNMKKPRQEVLEMRKIVAEYEKTIAQMIEDEQRASYDLPKSFHHLNMEKEQ 1557
K ++ +K ++ R+EVLEMRKIVAEYEKTIAQMIEDEQR S KSF L MEKEQ
Sbjct: 588 KEIEANEWKKKYEETREEVLEMRKIVAEYEKTIAQMIEDEQRTSMSSQKSFQQLTMEKEQ 647
Query: 1558 ALANL 1572
ALA+L
Sbjct: 648 ALADL 652
Score = 60.8 bits (146), Expect = 3e-09
Identities = 33/56 (58%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +3
Query: 846 MAFSPWQILSPVQWAKWTWSAVR-XXXXXXXXXXXXXXXXXXXXXQAETKSLSFRS 1010
MAFSPWQILSPVQWAKWTWSAVR QAETKSLSF S
Sbjct: 1 MAFSPWQILSPVQWAKWTWSAVRGSGAGEDEAGGPEGDPEEEEDSQAETKSLSFSS 56
>ref|NP_001004468.1| transforming acidic coiled-coil-containing protein 2 isoform c [Mus
musculus].
Length = 2879
Score = 65.5 bits (158), Expect(2) = 1e-15
Identities = 35/57 (61%), Positives = 43/57 (75%)
Frame = +1
Query: 1402 RKNMKKPRQEVLEMRKIVAEYEKTIAQMIEDEQRASYDLPKSFHHLNMEKEQALANL 1572
R ++ R+EV+EMRKIVAEYEKTIAQMIEDEQR ++ L +EKEQALA+L
Sbjct: 2700 RDKYEESRREVVEMRKIVAEYEKTIAQMIEDEQREKSISHQTVQQLVLEKEQALADL 2756
Score = 37.0 bits (84), Expect(2) = 1e-15
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 1311 GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEET 1421
G+ + D + L + R E+I KE E +EW+ KYEE+
Sbjct: 2670 GLLFQQPDLDSALQVARAEVIAKEREVSEWRDKYEES 2706
>ref|NP_996738.2| transforming acidic coiled-coil-containing protein 2 isoform a [Mus
musculus].
Length = 1146
Score = 65.5 bits (158), Expect(2) = 1e-15
Identities = 35/57 (61%), Positives = 43/57 (75%)
Frame = +1
Query: 1402 RKNMKKPRQEVLEMRKIVAEYEKTIAQMIEDEQRASYDLPKSFHHLNMEKEQALANL 1572
R ++ R+EV+EMRKIVAEYEKTIAQMIEDEQR ++ L +EKEQALA+L
Sbjct: 967 RDKYEESRREVVEMRKIVAEYEKTIAQMIEDEQREKSISHQTVQQLVLEKEQALADL 1023
Score = 37.0 bits (84), Expect(2) = 1e-15
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 1311 GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEET 1421
G+ + D + L + R E+I KE E +EW+ KYEE+
Sbjct: 937 GLLFQQPDLDSALQVARAEVIAKEREVSEWRDKYEES 973
>ref|NP_067289.2| transforming acidic coiled-coil-containing protein 2 isoform b [Mus
musculus].
Length = 1036
Score = 65.5 bits (158), Expect(2) = 1e-15
Identities = 35/57 (61%), Positives = 43/57 (75%)
Frame = +1
Query: 1402 RKNMKKPRQEVLEMRKIVAEYEKTIAQMIEDEQRASYDLPKSFHHLNMEKEQALANL 1572
R ++ R+EV+EMRKIVAEYEKTIAQMIEDEQR ++ L +EKEQALA+L
Sbjct: 857 RDKYEESRREVVEMRKIVAEYEKTIAQMIEDEQREKSISHQTVQQLVLEKEQALADL 913
Score = 37.0 bits (84), Expect(2) = 1e-15
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 1311 GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEET 1421
G+ + D + L + R E+I KE E +EW+ KYEE+
Sbjct: 827 GLLFQQPDLDSALQVARAEVIAKEREVSEWRDKYEES 863
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 42,922,525
Number of extensions: 1075792
Number of successful extensions: 5116
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5106
Number of HSP's successfully gapped: 11
Length of query: 524
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 418
Effective length of database: 12,433,743
Effective search space: 5197304574
Effective search space used: 5197304574
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001904
(1573 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003133400.2| PREDICTED: hypothetical protein LOC100520518... 280 2e-75
Alignment gi|XP_003359527.1| PREDICTED: transforming acidic coiled-coil-c... 124 2e-28
Alignment gi|XP_003133410.1| PREDICTED: hypothetical protein LOC100523028... 110 2e-24
Alignment gi|XP_003359532.1| PREDICTED: transforming acidic coiled-coil-c... 65 8e-11
>ref|XP_003133400.2| PREDICTED: hypothetical protein LOC100520518 [Sus scrofa].
Length = 214
Score = 280 bits (715), Expect = 2e-75
Identities = 151/212 (71%), Positives = 152/212 (71%)
Frame = -3
Query: 755 AGRASSGGADVVKXXXXXXXXXXXXXXXXXXXXXXXXXXRTCGSGASAPGDSRWKDTSPG 576
AGRASSGGADVVK RTCGSGASAPGDSRWKDTSPG
Sbjct: 3 AGRASSGGADVVKRAPSGGPGGALPLRRQAAPRSPRPPSRTCGSGASAPGDSRWKDTSPG 62
Query: 575 ASXXXXXXXXXSGSAGQRLRVRASRLPPPGRRGAHQLRRSRAPGAAPSDRTTXXXXXXXX 396
AS SGSAGQRLRVRASRLPPPGRRGAHQLRRSRAPGAAPSDRTT
Sbjct: 63 ASSGPGPAGRLSGSAGQRLRVRASRLPPPGRRGAHQLRRSRAPGAAPSDRTTRARGRGRR 122
Query: 395 XXXXFEALGAPAGSPHHGAKVVAPALREGASRLQLRPQAKDPGAPNSSSGVGSGEYPSFL 216
FEALGAPAGSPHHGAKVVAPALREGASRLQLRPQAKDPGAPNSSSGVGSGE P FL
Sbjct: 123 RRRAFEALGAPAGSPHHGAKVVAPALREGASRLQLRPQAKDPGAPNSSSGVGSGEDPFFL 182
Query: 215 AAWRRELAAPPDGKXXXXXXXXXXLTHRLISW 120
AAWRRELAAPP+GK LTHRL SW
Sbjct: 183 AAWRRELAAPPEGKEAELELASLSLTHRLRSW 214
>ref|XP_003359527.1| PREDICTED: transforming acidic coiled-coil-containing protein 1-like
[Sus scrofa].
Length = 254
Score = 124 bits (310), Expect = 2e-28
Identities = 63/77 (81%), Positives = 68/77 (88%)
Frame = +3
Query: 1191 MEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEI 1370
++K M+ ++ D GTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEI
Sbjct: 4 VKKLMTRRVTCDLFRPQGTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEI 63
Query: 1371 ITKEIEANEWKKKYEET 1421
ITKEIEANEWKKKYEET
Sbjct: 64 ITKEIEANEWKKKYEET 80
Score = 83.6 bits (205), Expect = 3e-16
Identities = 44/65 (67%), Positives = 51/65 (78%)
Frame = +1
Query: 1378 KRLKQMNGRKNMKKPRQEVLEMRKIVAEYEKTIAQMIEDEQRASYDLPKSFHHLNMEKEQ 1557
K ++ +K ++ RQEVLEMRKIVAEYEKTIAQMIEDEQRAS KSF L+MEKEQ
Sbjct: 66 KEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQ 125
Query: 1558 ALANL 1572
ALA+L
Sbjct: 126 ALADL 130
>ref|XP_003133410.1| PREDICTED: hypothetical protein LOC100523028 [Sus scrofa].
Length = 103
Score = 110 bits (276), Expect = 2e-24
Identities = 59/103 (57%), Positives = 59/103 (57%)
Frame = +3
Query: 471 MRASPARRREPGRSDPESLTRRAAXXXXXXXXXGGPWRGVFPXXXXXXXXXXXXXXXXXX 650
MRASPARRREPGRSDPESLTRRAA GGPWRGVFP
Sbjct: 1 MRASPARRREPGRSDPESLTRRAAEPPRGPGPRGGPWRGVFPARVAGCGGAAAARSGRRT 60
Query: 651 XXXXXXLPAEXXXXXXXXXXXSFNHIRASTGSASGACHRFPPF 779
LPAE SFNHIRASTGSASGACHRFPPF
Sbjct: 61 RRTGRCLPAERKRSTRAPRRRSFNHIRASTGSASGACHRFPPF 103
>ref|XP_003359532.1| PREDICTED: transforming acidic coiled-coil-containing protein 1 [Sus
scrofa].
Length = 521
Score = 65.5 bits (158), Expect = 8e-11
Identities = 33/55 (60%), Positives = 33/55 (60%)
Frame = +3
Query: 846 MAFSPWQILSPVQWAKWTWSAVRXXXXXXXXXXXXXXXXXXXXXQAETKSLSFRS 1010
MAFSPWQILSPVQWAKWTWSAVR QAETKSLSF S
Sbjct: 1 MAFSPWQILSPVQWAKWTWSAVRGGGAGGDEAGGSEGDPEEEDSQAETKSLSFSS 55
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,645,550
Number of extensions: 1189689
Number of successful extensions: 4810
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4791
Number of HSP's successfully gapped: 5
Length of query: 524
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 420
Effective length of database: 8,754,644
Effective search space: 3676950480
Effective search space used: 3676950480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001904
(1573 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 1007 0.0
Sscrofa_Chr14 72 1e-09
>Sscrofa_Chr15
|| Length = 157681621
Score = 1007 bits (508), Expect = 0.0
Identities = 563/588 (95%), Gaps = 1/588 (0%)
Strand = Plus / Plus
Query: 420 agtagtacggtccgagggggcggctcctggggcgcggctccgccgcagctgatgcgcgcc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55038419 agtagtacggtccgagggggcggctcctggggcgcggctccgccgcagctgatgcgcgcc 55038478
Query: 480 tcgccggcccggaggcgggagccgggacgctcggacccggagtcgctgacccgccgagcc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55038479 tcgccggcccggaggcgggagccgggacgctcggacccggagtcgctgacccgccgagcc 55038538
Query: 540 gctgannnnnnnnnnnnnnnnnnnnnnnnaggaggcccctggagaggtgtctttccagcg 599
||||| |||||||||||||||||||||||||||||||
Sbjct: 55038539 gctgagccgccccgcgggcccgggccccgaggaggcccctggagaggtgtctttccagcg 55038598
Query: 600 agagtcgccgggtgcggaggcgccgctgccgcacgttcgggaaggaggacgaggagaacg 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55038599 agagtcgccgggtgcggaggcgccgctgccgcacgttcgggaaggaggacgaggagaacg 55038658
Query: 660 gggcgctgcctgccggcggagaggaagcgctccacccgggccccccgacggcgctcgttt 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55038659 gggcgctgcctgccggcggagaggaagcgctccacccgggccccccgacggcgctcgttt 55038718
Query: 720 aaccacatccgcgcctccactggaagcgcgtccggcgcctgtcaccggttccctccattt 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55038719 aaccacatccgcgcctccactggaagcgcgtccggcgcctgtcaccggttccctccattt 55038778
Query: 780 tgaaagggaaaaaaggctctcccccttcccctcctcctaggagccggagctggaggagcc 839
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55038779 -gaaagggaaaaaaggctctcccccttcccctcctcctaggagccggagctggaggagcc 55038837
Query: 840 gcgctcatggcgttcagcccctggcagatcctgtcccccgtgcagtgggcgaaatggaca 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55038838 gcgctcatggcgttcagcccctggcagatcctgtcccccgtgcagtgggcgaaatggaca 55038897
Query: 900 tggtccgcggtgcgcggcgggggcgccggaggggacgaggccggagggtcggagggcgac 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55038898 tggtccgcggtgcgcggcgggggcgccggaggggacgaggccggagggtcggagggcgac 55038957
Query: 960 cccgaggaggaggactcgcaagccgagaccaaatccttgagtttcagg 1007
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55038958 cccgaggaggaggactcgcaagccgagaccaaatccttgagtttcagg 55039005
Score = 319 bits (161), Expect = 3e-84
Identities = 167/169 (98%)
Strand = Plus / Plus
Query: 215 ccaagaaagacggatattccccgctcccgacgccggaggagctgttgggggcacccgggt 274
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55038214 ccaagaaaaacggatcttccccgctcccgacgccggaggagctgttgggggcacccgggt 55038273
Query: 275 ccttggcctgcggccgaagttgcagccgggaagccccttccctcagtgcaggagctacca 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55038274 ccttggcctgcggccgaagttgcagccgggaagccccttccctcagtgcaggagctacca 55038333
Query: 335 ctttggcgccgtggtggggggatccagcgggagcgccgagcgcttcaaa 383
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55038334 ctttggcgccgtggtggggggatccagcgggagcgccgagcgcttcaaa 55038382
Score = 248 bits (125), Expect = 8e-63
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 1065 caggatgaaggagcagtgatctcccagatttctgacatttccaacagggatggccacgca 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55069303 caggatgaaggagcagtgatctcccagatttctgacatttccaacagggatggccacgca 55069362
Query: 1125 acagatgaggagaagctggcgtccacgacctgcggtcagaaacccaccggggccgagggg 1184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55069363 acagatgaggagaagctggcgtccacgacctgcggtcagaaacccaccggggccgagggg 55069422
Query: 1185 aaagg 1189
|||||
Sbjct: 55069423 aaagg 55069427
Score = 232 bits (117), Expect = 5e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 1242 ggaaccttggaggccccgatggagaaggctcctgtgtccgtggcctgcggaggggagagc 1301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55079996 ggaaccttggaggccccgatggagaaggctcctgtgtccgtggcctgcggaggggagagc 55080055
Query: 1302 cccctggacggcatctgcctcagtgaatcagacaagaccgccgtgctcaccctgatc 1358
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55080056 cccctggacggcatctgcctcagtgaatcagacaagaccgccgtgctcaccctgatc 55080112
Score = 145 bits (73), Expect = 8e-32
Identities = 80/81 (98%), Gaps = 1/81 (1%)
Strand = Plus / Minus
Query: 1366 agataatcactaaagagattgaagcaaatgaatggaagaaaaaatatgaagaaaccccga 1425
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 54875357 agataatcactaaagagattgaagcaaatgaatggaagaaaaaatatgaagaaa-cccga 54875299
Query: 1426 caagaagtcttggagatgagg 1446
|||||||||||||||||||||
Sbjct: 54875298 caagaagtcttggagatgagg 54875278
Score = 129 bits (65), Expect = 5e-27
Identities = 77/81 (95%)
Strand = Plus / Plus
Query: 136 tgagtgagagataaggacgatagttccagttctgcttctttaccgtcagggggagcagcc 195
||||||||||||||||| | |||||||||||||||||||||||| || ||||||||||||
Sbjct: 55034398 tgagtgagagataaggaggctagttccagttctgcttctttaccctctgggggagcagcc 55034457
Query: 196 agctcccttctccacgcagcc 216
|||||||||||||||||||||
Sbjct: 55034458 agctcccttctccacgcagcc 55034478
Score = 121 bits (61), Expect = 1e-24
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 1004 caggagtggctgtaaggtgaagaaatatgaagcccagtctcttgctttggatgggtgttc 1063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55066573 caggagtggctgtaaggtgaagaaatatgaagcccagtctcttgctttggatgggtgttc 55066632
Query: 1064 tcagg 1068
||||
Sbjct: 55066633 gcagg 55066637
Score = 111 bits (56), Expect = 1e-21
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 1187 aggcatggagaaagagatgagcctgaagatggagaaggatggatccaccatgcccg 1242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55072342 aggcatggagaaagagatgagcctgaagatggagaaggatggatccaccatgcccg 55072397
Score = 91.7 bits (46), Expect = 1e-15
Identities = 46/46 (100%)
Strand = Plus / Minus
Query: 1444 aggaaaattgtggccgagtatgagaagaccattgcccaaatgatcg 1489
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54873231 aggaaaattgtggccgagtatgagaagaccattgcccaaatgatcg 54873186
Score = 75.8 bits (38), Expect = 7e-11
Identities = 76/86 (88%), Gaps = 2/86 (2%)
Strand = Plus / Minus
Query: 1489 gaagacgaacaaagggcgagttatgacctccca-aagagcttccaccacctgaacatgga 1547
||||| ||||| ||||||||| ||||||||||| ||||||||||| || |||| ||||||
Sbjct: 54871683 gaagatgaacagagggcgagt-atgacctcccagaagagcttccagcagctgagcatgga 54871625
Query: 1548 aaaggaacaggcgctggccaacctca 1573
||||| |||||||||||| ||||||
Sbjct: 54871624 gaaggagcaggcgctggccgacctca 54871599
>Sscrofa_Chr14
|| Length = 153851969
Score = 71.9 bits (36), Expect = 1e-09
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 1444 aggaaaattgtggccgagtatgagaagaccattgcccaaatgat 1487
|||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 143120522 aggaaaatagtggccgagtatgagaagaccatcgcccaaatgat 143120565
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,441,428
Number of extensions: 303
Number of successful extensions: 303
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 302
Number of HSP's successfully gapped: 12
Length of query: 1573
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1551
Effective length of database: 2,808,408,574
Effective search space: 4355841698274
Effective search space used: 4355841698274
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)