Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001908
(1943 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069592.1| glucose-6-phosphatase [Bos taurus]. 690 0.0
Alignment gi|NP_001178975.1| glucose-6-phosphatase 2 [Bos taurus]. 382 e-106
Alignment gi|XP_002685355.1| PREDICTED: islet-specific glucose-6-phosphat... 382 e-106
Alignment gi|NP_899208.2| glucose-6-phosphatase 3 [Bos taurus]. 224 2e-58
>ref|NP_001069592.1| glucose-6-phosphatase [Bos taurus].
Length = 357
Score = 690 bits (1780), Expect = 0.0
Identities = 333/357 (93%), Positives = 344/357 (96%)
Frame = +3
Query: 261 MEEGMNLLHNFGIQSTRYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIK 440
ME+GMN+LH+FGIQST YLQVNYQ+SQDWFILVSVIADLRNAFYVLFPIWFHL+EAVGIK
Sbjct: 1 MEKGMNVLHDFGIQSTHYLQVNYQNSQDWFILVSVIADLRNAFYVLFPIWFHLREAVGIK 60
Query: 441 LLWVAVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHA 620
LLWVAVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTS PLIKQFPVTCETGPGSPSGHA
Sbjct: 61 LLWVAVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSAPLIKQFPVTCETGPGSPSGHA 120
Query: 621 MGTAGVYYVMVTSALSIIRGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQ 800
MGTAGVYYVMVTS LSI RGKKKPTY FRCLNV+LWLGFW VQLNVCLSRIYLAAHFPHQ
Sbjct: 121 MGTAGVYYVMVTSTLSIFRGKKKPTYRFRCLNVMLWLGFWVVQLNVCLSRIYLAAHFPHQ 180
Query: 801 VVAGVLSGIAVAETFRHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEK 980
VVAGVLSGIAVAETFRHIQSIYNASLKKYFLIT FLFSFAIGFYLLLK LGVDL WTLEK
Sbjct: 181 VVAGVLSGIAVAETFRHIQSIYNASLKKYFLITCFLFSFAIGFYLLLKWLGVDLLWTLEK 240
Query: 981 AKRRCERPEWVHIDTTPFASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIV 1160
AKRRCERPEWVHIDTTPFASLLKN+GTLFGLGLALNSSMYR+ CKGKLSKWFPFRLSCIV
Sbjct: 241 AKRRCERPEWVHIDTTPFASLLKNLGTLFGLGLALNSSMYRESCKGKLSKWFPFRLSCIV 300
Query: 1161 ASLVLLHFFDSLKPPSQIELIFYVLSFCKSAAVPLASVSLIPYCLSRALGQPDKKTL 1331
ASLVLLH FDSLKPPSQIELIFYVLSFCKSAAVPLASVSLIPYCL+ LGQP+KKT+
Sbjct: 301 ASLVLLHLFDSLKPPSQIELIFYVLSFCKSAAVPLASVSLIPYCLAWVLGQPNKKTV 357
>ref|NP_001178975.1| glucose-6-phosphatase 2 [Bos taurus].
Length = 355
Score = 382 bits (982), Expect = e-106
Identities = 178/353 (50%), Positives = 239/353 (67%), Gaps = 2/353 (0%)
Frame = +3
Query: 273 MNLLHNFGIQSTRYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIKLLWV 452
M+ LH G+ ++LQ +Y+ ++ +S + D RN F + FP+WF L + VG K++WV
Sbjct: 1 MDFLHRNGVLVIQHLQKDYRAYYNFLNFMSNVGDPRNIFSIYFPLWFQLNQTVGTKMIWV 60
Query: 453 AVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTA 632
AVIGDW NL+FKWILFG RPYWWV +T Y N S P ++QFP TCETGPGSPSGHAMG++
Sbjct: 61 AVIGDWFNLIFKWILFGHRPYWWVQETQIYPNHSSPCLEQFPTTCETGPGSPSGHAMGSS 120
Query: 633 GVYYVMVTSALS--IIRGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQVV 806
V+YVMVT+ALS + + K R LW FW +Q+NVC+SR+++A HFPHQV+
Sbjct: 121 CVWYVMVTAALSHTVSQMDKSFITLHRLTWSFLWSLFWLIQINVCISRVFIATHFPHQVI 180
Query: 807 AGVLSGIAVAETFRHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAK 986
GV+ G+ VAE F + I ASL Y FLF FA+GFYLLL+ L +DL W++ AK
Sbjct: 181 LGVIGGVLVAEIFEYTPGIQTASLSVYLKTNLFLFLFALGFYLLLRHLDIDLLWSVPIAK 240
Query: 987 RRCERPEWVHIDTTPFASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVAS 1166
+ C P+W+HIDTTPFA L++N+G LFGLG A+NS M+ + C+G+ FRL C + S
Sbjct: 241 KWCANPDWIHIDTTPFAGLVRNLGVLFGLGFAINSEMFLRSCRGENGYGLSFRLLCALVS 300
Query: 1167 LVLLHFFDSLKPPSQIELIFYVLSFCKSAAVPLASVSLIPYCLSRALGQPDKK 1325
L L + +K P+ E +FYVLSFCKSA++PL V+LIPYC+ + KK
Sbjct: 301 LTTLQLYHFIKIPTDTEYLFYVLSFCKSASIPLTVVALIPYCIHMLMKPSAKK 353
>ref|XP_002685355.1| PREDICTED: islet-specific glucose-6-phosphatase-related protein-like
[Bos taurus].
Length = 355
Score = 382 bits (982), Expect = e-106
Identities = 178/353 (50%), Positives = 239/353 (67%), Gaps = 2/353 (0%)
Frame = +3
Query: 273 MNLLHNFGIQSTRYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIKLLWV 452
M+ LH G+ ++LQ +Y+ ++ +S + D RN F + FP+WF L + VG K++WV
Sbjct: 1 MDFLHRNGVLVIQHLQKDYRAYYNFLNFMSNVGDPRNIFSIYFPLWFQLNQTVGTKMIWV 60
Query: 453 AVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTA 632
AVIGDW NL+FKWILFG RPYWWV +T Y N S P ++QFP TCETGPGSPSGHAMG++
Sbjct: 61 AVIGDWFNLIFKWILFGHRPYWWVQETQIYPNHSSPCLEQFPTTCETGPGSPSGHAMGSS 120
Query: 633 GVYYVMVTSALS--IIRGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQVV 806
V+YVMVT+ALS + + K R LW FW +Q+NVC+SR+++A HFPHQV+
Sbjct: 121 CVWYVMVTAALSHTVSQMDKSFITLHRLTWSFLWSLFWLIQINVCISRVFIATHFPHQVI 180
Query: 807 AGVLSGIAVAETFRHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAK 986
GV+ G+ VAE F + I ASL Y FLF FA+GFYLLL+ L +DL W++ AK
Sbjct: 181 LGVIGGVLVAEIFEYTPGIQTASLSVYLKTNLFLFLFALGFYLLLRHLDIDLLWSVPIAK 240
Query: 987 RRCERPEWVHIDTTPFASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVAS 1166
+ C P+W+HIDTTPFA L++N+G LFGLG A+NS M+ + C+G+ FRL C + S
Sbjct: 241 KWCANPDWIHIDTTPFAGLVRNLGVLFGLGFAINSEMFLRSCRGENGYGLSFRLLCALVS 300
Query: 1167 LVLLHFFDSLKPPSQIELIFYVLSFCKSAAVPLASVSLIPYCLSRALGQPDKK 1325
L L + +K P+ E +FYVLSFCKSA++PL V+LIPYC+ + KK
Sbjct: 301 LTTLQLYHFIKIPTDTEYLFYVLSFCKSASIPLTVVALIPYCIHMLMKPSAKK 353
>ref|NP_899208.2| glucose-6-phosphatase 3 [Bos taurus].
Length = 346
Score = 224 bits (572), Expect = 2e-58
Identities = 131/332 (39%), Positives = 189/332 (56%)
Frame = +3
Query: 294 GIQSTRYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIKLLWVAVIGDWL 473
GI LQ ++ ++ V+ + D ++ F FP ++ VGI +LW+++I +WL
Sbjct: 8 GIAMAEALQNQLPWLENVWLWVTFLGDPKSLFLFYFPAAYYASRRVGIAVLWISLITEWL 67
Query: 474 NLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMV 653
NLVFKW LFG RP+WWV ++ YYS + QFP +CETGPGSPSGH M T + ++
Sbjct: 68 NLVFKWFLFGDRPFWWVHESGYYSQAPAQ-VHQFPSSCETGPGSPSGHCMITGAALWPIM 126
Query: 654 TSALSIIRGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQVVAGVLSGIAV 833
T+ S + + R + VI L + T L V LSR++L AHFPHQV+AG+++G AV
Sbjct: 127 TAVSSQMATRAHS----RWVRVIPSLAYCTFLLAVGLSRVFLLAHFPHQVLAGLITG-AV 181
Query: 834 AETFRHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCERPEWV 1013
Q L Y L + L A Y L LG+DLSW++ A + CERPEWV
Sbjct: 182 LGWLMTPQVPMERELSFYGLTSLALLLGASLIYWTLFTLGLDLSWSINLASKWCERPEWV 241
Query: 1014 HIDTTPFASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLHFFDS 1193
H+D+ PFASL ++ G GLG+AL+S Y Q + L + +L C+V ++ LL +
Sbjct: 242 HLDSRPFASLSRDSGAALGLGIALHSPCYAQVRRAHLG--YGQKLVCLVLAMGLLGPLNW 299
Query: 1194 LKPPSQIELIFYVLSFCKSAAVPLASVSLIPY 1289
L P QI L FY+ +F K P ++L+P+
Sbjct: 300 LGYPPQISL-FYIFNFLKYTLWPCLVLALVPW 330
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 71,190,279
Number of extensions: 1847014
Number of successful extensions: 5508
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5493
Number of HSP's successfully gapped: 4
Length of query: 647
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 538
Effective length of database: 14,074,782
Effective search space: 7572232716
Effective search space used: 7572232716
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001908
(1943 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_855553.1| PREDICTED: glucose-6-phosphatase [Canis familia... 685 0.0
Alignment gi|NP_001002993.1| glucose-6-phosphatase [Canis lupus familiari... 684 0.0
Alignment gi|XP_545511.2| PREDICTED: similar to glucose-6-phosphatase, ca... 388 e-107
Alignment gi|XP_548065.2| PREDICTED: similar to glucose-6-phosphatase cat... 230 3e-60
>ref|XP_855553.1| PREDICTED: glucose-6-phosphatase [Canis familiaris].
Length = 357
Score = 685 bits (1768), Expect = 0.0
Identities = 326/357 (91%), Positives = 342/357 (95%)
Frame = +3
Query: 261 MEEGMNLLHNFGIQSTRYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIK 440
ME+GM++LH+FGIQST YLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHL+EAVGIK
Sbjct: 1 MEKGMDVLHDFGIQSTHYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLREAVGIK 60
Query: 441 LLWVAVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHA 620
LLWVAVIGDWLNLVFKWILFGQRPYWWV+DTDYYSNTSVPLIKQFPVTCETGPGSPSGHA
Sbjct: 61 LLWVAVIGDWLNLVFKWILFGQRPYWWVMDTDYYSNTSVPLIKQFPVTCETGPGSPSGHA 120
Query: 621 MGTAGVYYVMVTSALSIIRGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQ 800
MGTAGVYYVMVTS LSI RG+K+PTY FRCLN++LWLGFW VQLNVCLSRIYLAAHFPHQ
Sbjct: 121 MGTAGVYYVMVTSTLSIFRGRKRPTYRFRCLNILLWLGFWAVQLNVCLSRIYLAAHFPHQ 180
Query: 801 VVAGVLSGIAVAETFRHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEK 980
VVAGVLSGIAVAETFRHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDL WTLEK
Sbjct: 181 VVAGVLSGIAVAETFRHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLLWTLEK 240
Query: 981 AKRRCERPEWVHIDTTPFASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIV 1160
A+R CERPEWVHIDTTPFASLLKNVGTLFGLG+ALNSSMYR+ CKGKLSKWFPFRLSCIV
Sbjct: 241 ARRWCERPEWVHIDTTPFASLLKNVGTLFGLGVALNSSMYRESCKGKLSKWFPFRLSCIV 300
Query: 1161 ASLVLLHFFDSLKPPSQIELIFYVLSFCKSAAVPLASVSLIPYCLSRALGQPDKKTL 1331
SL+LLH FDSLKPPSQ ELIFY LSFCKSAAVPLASVSLIPYCL+R QPDKK+L
Sbjct: 301 VSLILLHLFDSLKPPSQTELIFYTLSFCKSAAVPLASVSLIPYCLARVFDQPDKKSL 357
>ref|NP_001002993.1| glucose-6-phosphatase [Canis lupus familiaris].
Length = 357
Score = 684 bits (1764), Expect = 0.0
Identities = 325/357 (91%), Positives = 341/357 (95%)
Frame = +3
Query: 261 MEEGMNLLHNFGIQSTRYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIK 440
ME+GM++LH+FGIQST YLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHL+EAVGIK
Sbjct: 1 MEKGMDVLHDFGIQSTHYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLREAVGIK 60
Query: 441 LLWVAVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHA 620
LLWVAVIGDWLNLVFKWILFGQRPYWWV+DTDYYSNTSVPLIKQFPVTCETGPGSPSGHA
Sbjct: 61 LLWVAVIGDWLNLVFKWILFGQRPYWWVMDTDYYSNTSVPLIKQFPVTCETGPGSPSGHA 120
Query: 621 MGTAGVYYVMVTSALSIIRGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQ 800
MGTAGVYYVMVTS LSI RG+K+PTY FRCLN++LWLGFW VQLNVCLSRIYLAAHFPHQ
Sbjct: 121 MGTAGVYYVMVTSTLSIFRGRKRPTYRFRCLNILLWLGFWAVQLNVCLSRIYLAAHFPHQ 180
Query: 801 VVAGVLSGIAVAETFRHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEK 980
VVAGVLSGIAVAETFRHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDL WTLEK
Sbjct: 181 VVAGVLSGIAVAETFRHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLLWTLEK 240
Query: 981 AKRRCERPEWVHIDTTPFASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIV 1160
A+R CERPEWVHIDTTPFASLLKNVGTLFGLG+ LNSSMYR+ CKGKLSKWFPFRLSCIV
Sbjct: 241 ARRWCERPEWVHIDTTPFASLLKNVGTLFGLGVTLNSSMYRESCKGKLSKWFPFRLSCIV 300
Query: 1161 ASLVLLHFFDSLKPPSQIELIFYVLSFCKSAAVPLASVSLIPYCLSRALGQPDKKTL 1331
SL+LLH FDSLKPPSQ ELIFY LSFCKSAAVPLASVSLIPYCL+R QPDKK+L
Sbjct: 301 VSLILLHLFDSLKPPSQTELIFYTLSFCKSAAVPLASVSLIPYCLARVFDQPDKKSL 357
>ref|XP_545511.2| PREDICTED: similar to glucose-6-phosphatase, catalytic, related
[Canis familiaris].
Length = 371
Score = 388 bits (996), Expect = e-107
Identities = 181/363 (49%), Positives = 245/363 (67%), Gaps = 3/363 (0%)
Frame = +3
Query: 246 GQRVRMEEGMNLLHNFGIQSTRYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQE 425
G ++ + M+ LH G+ + ++LQ +Y+ ++ +S + D RN F + FP+WF L +
Sbjct: 7 GAGLQEKSKMDFLHRNGVLAIQHLQKDYRAYYNFLNFMSNVGDPRNIFSIYFPLWFQLNQ 66
Query: 426 AVGIKLLWVAVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGS 605
+G K++WVAVIGDW NL+FKWILFG RPYWWV +T Y N S P ++QFP TCETGPGS
Sbjct: 67 TIGTKMIWVAVIGDWFNLIFKWILFGHRPYWWVQETQIYPNHSSPCLEQFPTTCETGPGS 126
Query: 606 PSGHAMGTAGVYYVMVTSALSII---RGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIY 776
PSGHAMG++ V+YVMVT+ALS K TY R LW FW +Q++VC+SR++
Sbjct: 127 PSGHAMGSSCVWYVMVTAALSHTVSRMDKSLTTYLHRLTWSFLWSLFWLIQISVCISRVF 186
Query: 777 LAAHFPHQVVAGVLSGIAVAETFRHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGV 956
+A HFPHQV+ GV G+ VAE F H I ASL Y FLF FA+GFYLLL+ L +
Sbjct: 187 IATHFPHQVILGVFGGMLVAEAFEHTPGIQTASLSTYLKTNLFLFLFALGFYLLLRLLDI 246
Query: 957 DLSWTLEKAKRRCERPEWVHIDTTPFASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWF 1136
DL W++ AK+ C P+W+HIDTTPFA L++N+G LFGLG A+NS M+ + C+G+
Sbjct: 247 DLLWSVPIAKKWCANPDWIHIDTTPFAGLVRNLGVLFGLGFAINSEMFLRSCRGENGYKL 306
Query: 1137 PFRLSCIVASLVLLHFFDSLKPPSQIELIFYVLSFCKSAAVPLASVSLIPYCLSRALGQP 1316
FRL C ASL+ L + +K P+ E +FYVLSFCKSA++PL V+LIPYC+ +
Sbjct: 307 SFRLLCAGASLMTLQLYHFIKIPTHAEHLFYVLSFCKSASIPLTVVALIPYCIHMLMKPS 366
Query: 1317 DKK 1325
+KK
Sbjct: 367 EKK 369
>ref|XP_548065.2| PREDICTED: similar to glucose-6-phosphatase catalytic subunit 3
[Canis familiaris].
Length = 346
Score = 230 bits (587), Expect = 3e-60
Identities = 132/332 (39%), Positives = 192/332 (57%)
Frame = +3
Query: 294 GIQSTRYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIKLLWVAVIGDWL 473
GI LQ ++ ++ V+ + D ++ F FP ++ VGI +LW+++I +WL
Sbjct: 8 GIAMAEALQNQLPWLENVWLWVTFLGDPKSLFLFYFPAAYYTSRRVGIAVLWISLITEWL 67
Query: 474 NLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMV 653
NLVFKW LFG RPYWWV ++ YYS+ + QFP +CETGPGSPSGH M T + ++
Sbjct: 68 NLVFKWFLFGDRPYWWVHESGYYSHAPAQ-VHQFPSSCETGPGSPSGHCMITGAALWPIM 126
Query: 654 TSALSIIRGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQVVAGVLSGIAV 833
T+ S + + R + VI L + T L V LSRI+L AHFPHQV+AG+++G AV
Sbjct: 127 TAISSQVASRAHS----RWVRVIPSLAYCTFLLAVGLSRIFLLAHFPHQVLAGLITG-AV 181
Query: 834 AETFRHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCERPEWV 1013
+ L Y L + L A Y +L LG+DLSW++ A + CERPEWV
Sbjct: 182 LGWLMAPRVPMERELSFYGLTSLALLLGASLIYWILVTLGLDLSWSIRLASKWCERPEWV 241
Query: 1014 HIDTTPFASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLHFFDS 1193
H+D+ PFASL ++ G GLG+AL+S Y Q + +L +++C+V ++ LL D
Sbjct: 242 HVDSRPFASLSRDSGAALGLGIALHSPCYTQVRRAQLG--HGQKIACLVLAMGLLGPLDW 299
Query: 1194 LKPPSQIELIFYVLSFCKSAAVPLASVSLIPY 1289
L P QI L FY+ +F K P ++L+P+
Sbjct: 300 LGHPPQISL-FYIFNFLKFTLWPCLVLALVPW 330
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 74,208,006
Number of extensions: 1895354
Number of successful extensions: 5350
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5344
Number of HSP's successfully gapped: 4
Length of query: 647
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 538
Effective length of database: 15,240,880
Effective search space: 8199593440
Effective search space used: 8199593440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001908
(1943 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000142.1| glucose-6-phosphatase [Homo sapiens]. 677 0.0
Alignment gi|NP_066999.1| glucose-6-phosphatase 2 isoform 1 [Homo sapiens]. 374 e-103
Alignment gi|NP_612396.1| glucose-6-phosphatase 3 [Homo sapiens]. 219 5e-57
Alignment gi|NP_001075155.1| glucose-6-phosphatase 2 isoform 2 [Homo sapi... 167 2e-41
>ref|NP_000142.1| glucose-6-phosphatase [Homo sapiens].
Length = 357
Score = 677 bits (1748), Expect = 0.0
Identities = 326/357 (91%), Positives = 339/357 (94%)
Frame = +3
Query: 261 MEEGMNLLHNFGIQSTRYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIK 440
MEEGMN+LH+FGIQST YLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIK
Sbjct: 1 MEEGMNVLHDFGIQSTHYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIK 60
Query: 441 LLWVAVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHA 620
LLWVAVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHA
Sbjct: 61 LLWVAVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHA 120
Query: 621 MGTAGVYYVMVTSALSIIRGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQ 800
MGTAGVYYVMVTS LSI +GK KPTY FRCLNVILWLGFW VQLNVCLSRIYLAAHFPHQ
Sbjct: 121 MGTAGVYYVMVTSTLSIFQGKIKPTYRFRCLNVILWLGFWAVQLNVCLSRIYLAAHFPHQ 180
Query: 801 VVAGVLSGIAVAETFRHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEK 980
VVAGVLSGIAV ETF HI SIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDL WTLEK
Sbjct: 181 VVAGVLSGIAVTETFSHIHSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLLWTLEK 240
Query: 981 AKRRCERPEWVHIDTTPFASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIV 1160
A+R CE+PEWVHIDTTPFASLLKN+GTLFGLGLALNSSMYR+ CKGKLSKW PFRLS IV
Sbjct: 241 AQRWCEQPEWVHIDTTPFASLLKNLGTLFGLGLALNSSMYRESCKGKLSKWLPFRLSSIV 300
Query: 1161 ASLVLLHFFDSLKPPSQIELIFYVLSFCKSAAVPLASVSLIPYCLSRALGQPDKKTL 1331
ASLVLLH FDSLKPPSQ+EL+FYVLSFCKSA VPLASVS+IPYCL++ LGQP KK+L
Sbjct: 301 ASLVLLHVFDSLKPPSQVELVFYVLSFCKSAVVPLASVSVIPYCLAQVLGQPHKKSL 357
>ref|NP_066999.1| glucose-6-phosphatase 2 isoform 1 [Homo sapiens].
Length = 355
Score = 374 bits (959), Expect = e-103
Identities = 177/354 (50%), Positives = 238/354 (67%), Gaps = 2/354 (0%)
Frame = +3
Query: 273 MNLLHNFGIQSTRYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIKLLWV 452
M+ LH G+ ++LQ +Y+ + +S + D RN F++ FP+ F + VG K++WV
Sbjct: 1 MDFLHRNGVLIIQHLQKDYRAYYTFLNFMSNVGDPRNIFFIYFPLCFQFNQTVGTKMIWV 60
Query: 453 AVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTA 632
AVIGDWLNL+FKWILFG RPYWWV +T Y N S P ++QFP TCETGPGSPSGHAMG +
Sbjct: 61 AVIGDWLNLIFKWILFGHRPYWWVQETQIYPNHSSPCLEQFPTTCETGPGSPSGHAMGAS 120
Query: 633 GVYYVMVTSALS-IIRGKKKPTYGFRCLN-VILWLGFWTVQLNVCLSRIYLAAHFPHQVV 806
V+YVMVT+ALS + G K + L LW FW +Q++VC+SR+++A HFPHQV+
Sbjct: 121 CVWYVMVTAALSHTVCGMDKFSITLHRLTWSFLWSVFWLIQISVCISRVFIATHFPHQVI 180
Query: 807 AGVLSGIAVAETFRHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAK 986
GV+ G+ VAE F H I ASL Y FLF FA+GFYLLL+ L +DL W++ AK
Sbjct: 181 LGVIGGMLVAEAFEHTPGIQTASLGTYLKTNLFLFLFAVGFYLLLRVLNIDLLWSVPIAK 240
Query: 987 RRCERPEWVHIDTTPFASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVAS 1166
+ C P+W+HIDTTPFA L++N+G LFGLG A+NS M+ C+G + FRL C + S
Sbjct: 241 KWCANPDWIHIDTTPFAGLVRNLGVLFGLGFAINSEMFLLSCRGGNNYTLSFRLLCALTS 300
Query: 1167 LVLLHFFDSLKPPSQIELIFYVLSFCKSAAVPLASVSLIPYCLSRALGQPDKKT 1328
L +L + L+ P+ E +FYVLSFCKSA++PL V+ IPY + + Q KK+
Sbjct: 301 LTILQLYHFLQIPTHEEHLFYVLSFCKSASIPLTVVAFIPYSVHMLMKQSGKKS 354
>ref|NP_612396.1| glucose-6-phosphatase 3 [Homo sapiens].
Length = 346
Score = 219 bits (559), Expect = 5e-57
Identities = 125/334 (37%), Positives = 189/334 (56%)
Frame = +3
Query: 294 GIQSTRYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIKLLWVAVIGDWL 473
GI LQ ++ ++ ++ + D + F FP ++ VGI +LW+++I +WL
Sbjct: 8 GIVIAEALQNQLAWLENVWLWITFLGDPKILFLFYFPAAYYASRRVGIAVLWISLITEWL 67
Query: 474 NLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMV 653
NL+FKW LFG RP+WWV ++ YYS + QFP +CETGPGSPSGH M T + ++
Sbjct: 68 NLIFKWFLFGDRPFWWVHESGYYSQAPAQ-VHQFPSSCETGPGSPSGHCMITGAALWPIM 126
Query: 654 TSALSIIRGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQVVAGVLSGIAV 833
T+ S + + + R + V+ L + T L V LSRI++ AHFPHQV+AG+++G AV
Sbjct: 127 TALSSQVATRARS----RWVRVMPSLAYCTFLLAVGLSRIFILAHFPHQVLAGLITG-AV 181
Query: 834 AETFRHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCERPEWV 1013
+ L Y L L Y L LG+DLSW++ A + CERPEW+
Sbjct: 182 LGWLMTPRVPMERELSFYGLTALALMLGTSLIYWTLFTLGLDLSWSISLAFKWCERPEWI 241
Query: 1014 HIDTTPFASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLHFFDS 1193
H+D+ PFASL ++ G GLG+AL+S Y Q + +L +++C+V ++ LL D
Sbjct: 242 HVDSRPFASLSRDSGAALGLGIALHSPCYAQVRRAQLGN--GQKIACLVLAMGLLGPLDW 299
Query: 1194 LKPPSQIELIFYVLSFCKSAAVPLASVSLIPYCL 1295
L P QI L FY+ +F K P ++L+P+ +
Sbjct: 300 LGHPPQISL-FYIFNFLKYTLWPCLVLALVPWAV 332
>ref|NP_001075155.1| glucose-6-phosphatase 2 isoform 2 [Homo sapiens].
Length = 154
Score = 167 bits (424), Expect = 2e-41
Identities = 74/132 (56%), Positives = 96/132 (72%)
Frame = +3
Query: 273 MNLLHNFGIQSTRYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIKLLWV 452
M+ LH G+ ++LQ +Y+ + +S + D RN F++ FP+ F + VG K++WV
Sbjct: 1 MDFLHRNGVLIIQHLQKDYRAYYTFLNFMSNVGDPRNIFFIYFPLCFQFNQTVGTKMIWV 60
Query: 453 AVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTA 632
AVIGDWLNL+FKWILFG RPYWWV +T Y N S P ++QFP TCETGPGSPSGHAMG +
Sbjct: 61 AVIGDWLNLIFKWILFGHRPYWWVQETQIYPNHSSPCLEQFPTTCETGPGSPSGHAMGAS 120
Query: 633 GVYYVMVTSALS 668
V+YVMVT+ALS
Sbjct: 121 CVWYVMVTAALS 132
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 72,950,953
Number of extensions: 1877207
Number of successful extensions: 5575
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5562
Number of HSP's successfully gapped: 4
Length of query: 647
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 538
Effective length of database: 14,704,088
Effective search space: 7910799344
Effective search space used: 7910799344
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001908
(1943 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032087.2| glucose-6-phosphatase [Mus musculus]. 657 0.0
Alignment gi|NP_067306.1| glucose-6-phosphatase 2 [Mus musculus]. 382 e-106
Alignment gi|NP_787949.2| glucose-6-phosphatase 3 [Mus musculus]. 224 2e-58
>ref|NP_032087.2| glucose-6-phosphatase [Mus musculus].
Length = 357
Score = 657 bits (1696), Expect = 0.0
Identities = 312/357 (87%), Positives = 331/357 (92%)
Frame = +3
Query: 261 MEEGMNLLHNFGIQSTRYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIK 440
MEEGMN+LH+FGIQSTRYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHL+E VGI
Sbjct: 1 MEEGMNILHDFGIQSTRYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLKETVGIN 60
Query: 441 LLWVAVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHA 620
LLWVAV+GDW NLVFKWILFGQRPYWWVLDTDYYSN+SVP+IKQFPVTCETGPGSPSGHA
Sbjct: 61 LLWVAVVGDWFNLVFKWILFGQRPYWWVLDTDYYSNSSVPIIKQFPVTCETGPGSPSGHA 120
Query: 621 MGTAGVYYVMVTSALSIIRGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQ 800
MG AGVYYVMVTS L+I RGKKKPTYGFRCLNVILWLGFW VQLNVCLSRIYLAAHFPHQ
Sbjct: 121 MGAAGVYYVMVTSTLAIFRGKKKPTYGFRCLNVILWLGFWAVQLNVCLSRIYLAAHFPHQ 180
Query: 801 VVAGVLSGIAVAETFRHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEK 980
VVAGVLSGIAVAETF HI+ IYNASL+KY LIT FLF FA+GFYLLLKGLGVDL WTLEK
Sbjct: 181 VVAGVLSGIAVAETFSHIRGIYNASLRKYCLITIFLFGFALGFYLLLKGLGVDLLWTLEK 240
Query: 981 AKRRCERPEWVHIDTTPFASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIV 1160
AKR CERPEWVH+DTTPFASL KN+GTL GLGLALNSSMYR+ CKG+LSK PFR +CIV
Sbjct: 241 AKRWCERPEWVHLDTTPFASLFKNLGTLLGLGLALNSSMYRKSCKGELSKLLPFRFACIV 300
Query: 1161 ASLVLLHFFDSLKPPSQIELIFYVLSFCKSAAVPLASVSLIPYCLSRALGQPDKKTL 1331
ASLVLLH FDSLKPPSQ+ELIFY+LSFCKSA VP ASVSLIPYCL+R LGQ KK+L
Sbjct: 301 ASLVLLHLFDSLKPPSQVELIFYILSFCKSATVPFASVSLIPYCLARILGQTHKKSL 357
>ref|NP_067306.1| glucose-6-phosphatase 2 [Mus musculus].
Length = 355
Score = 382 bits (981), Expect = e-106
Identities = 176/354 (49%), Positives = 242/354 (68%), Gaps = 2/354 (0%)
Frame = +3
Query: 273 MNLLHNFGIQSTRYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIKLLWV 452
M+ LH G+ +LQ +Y+ + +S + D RN F + FP+WF L + VG K++WV
Sbjct: 1 MDFLHRSGVLIIHHLQEDYRTYYGFLNFMSNVGDPRNIFSIYFPLWFQLNQNVGTKMIWV 60
Query: 453 AVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTA 632
AVIGDW NL+FKWILFG RPYWW+ +T+ Y N S P ++QFP TCETGPGSPSGHAMG++
Sbjct: 61 AVIGDWFNLIFKWILFGHRPYWWIQETEIYPNHSSPCLEQFPTTCETGPGSPSGHAMGSS 120
Query: 633 GVYYVMVTSALS--IIRGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQVV 806
V+YVMVT+ALS I R ++ R LW FW +Q++VC+SR+++A HFPHQV+
Sbjct: 121 CVWYVMVTAALSYTISRMEESSVTLHRLTWSFLWSVFWLIQISVCISRVFIATHFPHQVI 180
Query: 807 AGVLSGIAVAETFRHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAK 986
GV+ G+ VAE F H ++ ASL Y FLF FA+GFYLLL+ G+DL W++ AK
Sbjct: 181 LGVIGGMLVAEAFEHTPGVHMASLSVYLKTNVFLFLFALGFYLLLRLFGIDLLWSVPIAK 240
Query: 987 RRCERPEWVHIDTTPFASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVAS 1166
+ C P+W+HID+TPFA L++N+G LFGLG A+NS M+ + C+G+ FRL C + S
Sbjct: 241 KWCANPDWIHIDSTPFAGLVRNLGVLFGLGFAINSEMFLRSCQGENGTKPSFRLLCALTS 300
Query: 1167 LVLLHFFDSLKPPSQIELIFYVLSFCKSAAVPLASVSLIPYCLSRALGQPDKKT 1328
L + + +K P+ E +FY+LSFCKSA++PL V+LIPYC+ + DKKT
Sbjct: 301 LTTMQLYRFIKIPTHAEPLFYLLSFCKSASIPLMVVALIPYCVHMLMRPGDKKT 354
>ref|NP_787949.2| glucose-6-phosphatase 3 [Mus musculus].
Length = 346
Score = 224 bits (570), Expect = 2e-58
Identities = 126/332 (37%), Positives = 187/332 (56%)
Frame = +3
Query: 294 GIQSTRYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIKLLWVAVIGDWL 473
GI LQ ++ ++ V+ + D +N F FP ++ +GI +LW+ I +WL
Sbjct: 8 GIIMAEALQNRLPGLENMWLWVTFLGDPKNLFQFCFPAAYYASRRLGISVLWITFIAEWL 67
Query: 474 NLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMV 653
NLVFKW LFG RP+WWV ++ Y + T + I QFP +CETGPGSPSGH M T + ++
Sbjct: 68 NLVFKWFLFGDRPFWWVHESGYSTQTPIQ-IHQFPSSCETGPGSPSGHCMITGAALWPVM 126
Query: 654 TSALSIIRGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQVVAGVLSGIAV 833
T+ S + + + + + VI L + T L V LSR++L AHFPHQV+ G++ G A+
Sbjct: 127 TAISSQVASRSRSPW----VRVIPGLAYCTFLLAVGLSRVFLLAHFPHQVLGGLIVGAAL 182
Query: 834 AETFRHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCERPEWV 1013
+ L Y L L A Y L LG+DLSW++ A + CERPEWV
Sbjct: 183 G-WLMSPRVPMERELSFYGLTALALMLGASLMYWTLFTLGLDLSWSINLASKWCERPEWV 241
Query: 1014 HIDTTPFASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLHFFDS 1193
H+D+ PFASL ++ G+ GLG+AL++ Y Q + L +++C V ++ LL F +
Sbjct: 242 HMDSRPFASLSRDSGSALGLGIALHTPCYAQIRRAHLGN--GQKIACFVLAMGLLVFLEW 299
Query: 1194 LKPPSQIELIFYVLSFCKSAAVPLASVSLIPY 1289
L P QI L FY+ +F K P ++L+P+
Sbjct: 300 LGYPPQISL-FYIFNFLKYTLWPCLVLALVPW 330
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 62,034,105
Number of extensions: 1586561
Number of successful extensions: 4371
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4361
Number of HSP's successfully gapped: 3
Length of query: 647
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 539
Effective length of database: 12,373,671
Effective search space: 6669408669
Effective search space used: 6669408669
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001908
(1943 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001106916.1| glucose-6-phosphatase [Sus scrofa]. 731 0.0
Alignment gi|XP_003131402.1| PREDICTED: glucose-6-phosphatase 3-like [Sus... 226 5e-59
Alignment gi|XP_003133509.2| PREDICTED: glucose-6-phosphatase 2-like [Sus... 169 4e-42
>ref|NP_001106916.1| glucose-6-phosphatase [Sus scrofa].
Length = 357
Score = 731 bits (1886), Expect = 0.0
Identities = 356/357 (99%), Positives = 356/357 (99%)
Frame = +3
Query: 261 MEEGMNLLHNFGIQSTRYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIK 440
MEEGMNLLHNFGIQSTRYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIK
Sbjct: 1 MEEGMNLLHNFGIQSTRYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIK 60
Query: 441 LLWVAVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHA 620
LLWVAVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSG A
Sbjct: 61 LLWVAVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGLA 120
Query: 621 MGTAGVYYVMVTSALSIIRGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQ 800
MGTAGVYYVMVTSALSIIRGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQ
Sbjct: 121 MGTAGVYYVMVTSALSIIRGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQ 180
Query: 801 VVAGVLSGIAVAETFRHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEK 980
VVAGVLSGIAVAETFRHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEK
Sbjct: 181 VVAGVLSGIAVAETFRHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEK 240
Query: 981 AKRRCERPEWVHIDTTPFASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIV 1160
AKRRCERPEWVHIDTTPFASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIV
Sbjct: 241 AKRRCERPEWVHIDTTPFASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIV 300
Query: 1161 ASLVLLHFFDSLKPPSQIELIFYVLSFCKSAAVPLASVSLIPYCLSRALGQPDKKTL 1331
ASLVLLHFFDSLKPPSQIELIFYVLSFCKSAAVPLASVSLIPYCLSRALGQPDKKTL
Sbjct: 301 ASLVLLHFFDSLKPPSQIELIFYVLSFCKSAAVPLASVSLIPYCLSRALGQPDKKTL 357
>ref|XP_003131402.1| PREDICTED: glucose-6-phosphatase 3-like [Sus scrofa].
Length = 346
Score = 226 bits (575), Expect = 5e-59
Identities = 131/332 (39%), Positives = 190/332 (57%)
Frame = +3
Query: 294 GIQSTRYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIKLLWVAVIGDWL 473
GI LQ ++ ++ V+ + D ++ F FP ++ VGI +LW+++I +WL
Sbjct: 8 GIAMAEALQNQLPWLENVWLWVTFLGDPKSLFLFYFPAAYYASRRVGIAVLWISLITEWL 67
Query: 474 NLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMV 653
NLVFKW LFG RP+WWV ++ YYS + QFP +CETGPGSPSGH M T + ++
Sbjct: 68 NLVFKWFLFGDRPFWWVHESGYYSQAPAQ-VHQFPSSCETGPGSPSGHCMITGAALWPIM 126
Query: 654 TSALSIIRGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQVVAGVLSGIAV 833
T+ S + + R + VI L + T L V LSR++L AHFPHQV+AG+++G AV
Sbjct: 127 TAISSQMATRTHS----RWVRVIPSLAYCTFLLAVGLSRVFLLAHFPHQVLAGLITG-AV 181
Query: 834 AETFRHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCERPEWV 1013
+ L Y L + L A Y L LG+DLSW++ A + CERPEWV
Sbjct: 182 LGWLMTPRVPMERELSFYGLTSLALLLGASLIYWTLFTLGLDLSWSISLASKWCERPEWV 241
Query: 1014 HIDTTPFASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLHFFDS 1193
H+D+ PFASL ++ G GLG+AL+S Y Q + L + +L+C+V ++ LL D
Sbjct: 242 HLDSRPFASLSRDSGAALGLGIALHSPCYAQVRRAHLG--YGQKLACLVLAMGLLGPLDW 299
Query: 1194 LKPPSQIELIFYVLSFCKSAAVPLASVSLIPY 1289
L P QI L FY+ +F K P ++L+P+
Sbjct: 300 LGYPPQISL-FYIFNFLKYTLWPCLVLALVPW 330
>ref|XP_003133509.2| PREDICTED: glucose-6-phosphatase 2-like [Sus scrofa].
Length = 154
Score = 169 bits (429), Expect = 4e-42
Identities = 74/131 (56%), Positives = 96/131 (73%)
Frame = +3
Query: 273 MNLLHNFGIQSTRYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIKLLWV 452
M+ LH G+ ++LQ +Y+ + +S + D RN F + FP+WF L + VG K++WV
Sbjct: 1 MDFLHRNGVLLIQHLQKDYRAYYSFLNFMSNVGDPRNIFSIYFPLWFQLNQRVGTKMIWV 60
Query: 453 AVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTA 632
AVIGDW NL+FKWILFG RPYWWV +T Y N S P ++QFP TCETGPGSPSGHAMG++
Sbjct: 61 AVIGDWFNLIFKWILFGHRPYWWVQETQIYPNHSSPCLEQFPTTCETGPGSPSGHAMGSS 120
Query: 633 GVYYVMVTSAL 665
V+YVMVT+AL
Sbjct: 121 CVWYVMVTAAL 131
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 45,818,548
Number of extensions: 1184289
Number of successful extensions: 3429
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3421
Number of HSP's successfully gapped: 3
Length of query: 647
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 542
Effective length of database: 8,729,747
Effective search space: 4731522874
Effective search space used: 4731522874
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001908
(1943 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL894545.1| Sus scrofa unplaced genomic scaffold chrU_scaffold32 218 9e-54
gb|GL892101.1| Sus scrofa unplaced genomic scaffold chrU_scaffold10 196 3e-47
>gb|GL894545.1| Sus scrofa unplaced genomic scaffold chrU_scaffold32
Length = 110
Score = 218 bits (110), Expect = 9e-54
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 263 ggaggagggaatgaaccttctccataactttgggatccaatcaacgcgctacctccaggt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 ggaggagggaatgaaccttctccataactttgggatccaatcaacgcgctacctccaggt 51
Query: 323 gaattaccaggactcccaggattggttcatcttggtatctgtgatcgcgg 372
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50 gaattaccaggactcccaggattggttcatcttggtatctgtgatcgcgg 1
>gb|GL892101.1| Sus scrofa unplaced genomic scaffold chrU_scaffold10
Length = 101
Score = 196 bits (99), Expect = 3e-47
Identities = 99/99 (100%)
Strand = Plus / Minus
Query: 820 caggcattgcagttgctgagactttccgccacattcagagtatctacaacgccagcctca 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 caggcattgcagttgctgagactttccgccacattcagagtatctacaacgccagcctca 40
Query: 880 agaagtattttctcattaccttcttcctgttcagttttg 918
|||||||||||||||||||||||||||||||||||||||
Sbjct: 39 agaagtattttctcattaccttcttcctgttcagttttg 1
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 60,779,657
Number of extensions: 1604
Number of successful extensions: 1604
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1604
Number of HSP's successfully gapped: 2
Length of query: 1943
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1921
Effective length of database: 2,808,408,574
Effective search space: 5394952870654
Effective search space used: 5394952870654
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)