Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001912
(1017 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069592.1| glucose-6-phosphatase [Bos taurus]. 307 e-167
Alignment gi|NP_001178975.1| glucose-6-phosphatase 2 [Bos taurus]. 172 6e-43
Alignment gi|XP_002685355.1| PREDICTED: islet-specific glucose-6-phosphat... 172 6e-43
Alignment gi|NP_899208.2| glucose-6-phosphatase 3 [Bos taurus]. 112 4e-25
>ref|NP_001069592.1| glucose-6-phosphatase [Bos taurus].
Length = 357
Score = 307 bits (787), Expect(2) = e-167
Identities = 153/165 (92%), Positives = 157/165 (95%)
Frame = +1
Query: 523 GIAVAETFRHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCER 702
GIAVAETFRHIQSIYNASLKKYFLIT FLFSFAIGFYLLLK LGVDL WTLEKAKRRCER
Sbjct: 188 GIAVAETFRHIQSIYNASLKKYFLITCFLFSFAIGFYLLLKWLGVDLLWTLEKAKRRCER 247
Query: 703 PEWVHIDTTPFASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLH 882
PEWVHIDTTPFASLLKN+GTLFGLGLALNSSMYR+ CKGKLSKWFPFRLSCIVASLVLLH
Sbjct: 248 PEWVHIDTTPFASLLKNLGTLFGLGLALNSSMYRESCKGKLSKWFPFRLSCIVASLVLLH 307
Query: 883 FFDSLKPPSQIELIFYVLSFLQSAAVPLASVSLIPYCLSRALGQP 1017
FDSLKPPSQIELIFYVLSF +SAAVPLASVSLIPYCL+ LGQP
Sbjct: 308 LFDSLKPPSQIELIFYVLSFCKSAAVPLASVSLIPYCLAWVLGQP 352
Score = 298 bits (764), Expect(2) = e-167
Identities = 139/149 (93%), Positives = 144/149 (96%)
Frame = +3
Query: 78 MEEGMNLLHNFGIQSTRYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIK 257
ME+GMN+LH+FGIQST YLQVNYQ+SQDWFILVSVIADLRNAFYVLFPIWFHL+EAVGIK
Sbjct: 1 MEKGMNVLHDFGIQSTHYLQVNYQNSQDWFILVSVIADLRNAFYVLFPIWFHLREAVGIK 60
Query: 258 LLWVAVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHA 437
LLWVAVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTS PLIKQFPVTCETGPGSPSGHA
Sbjct: 61 LLWVAVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSAPLIKQFPVTCETGPGSPSGHA 120
Query: 438 MGTAGVYYVMVTSALSIIRGKKKPTYGFR 524
MGTAGVYYVMVTS LSI RGKKKPTY FR
Sbjct: 121 MGTAGVYYVMVTSTLSIFRGKKKPTYRFR 149
>ref|NP_001178975.1| glucose-6-phosphatase 2 [Bos taurus].
Length = 355
Score = 172 bits (435), Expect = 6e-43
Identities = 75/132 (56%), Positives = 98/132 (74%)
Frame = +3
Query: 90 MNLLHNFGIQSTRYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIKLLWV 269
M+ LH G+ ++LQ +Y+ ++ +S + D RN F + FP+WF L + VG K++WV
Sbjct: 1 MDFLHRNGVLVIQHLQKDYRAYYNFLNFMSNVGDPRNIFSIYFPLWFQLNQTVGTKMIWV 60
Query: 270 AVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTA 449
AVIGDW NL+FKWILFG RPYWWV +T Y N S P ++QFP TCETGPGSPSGHAMG++
Sbjct: 61 AVIGDWFNLIFKWILFGHRPYWWVQETQIYPNHSSPCLEQFPTTCETGPGSPSGHAMGSS 120
Query: 450 GVYYVMVTSALS 485
V+YVMVT+ALS
Sbjct: 121 CVWYVMVTAALS 132
Score = 168 bits (426), Expect = 6e-42
Identities = 78/158 (49%), Positives = 106/158 (67%)
Frame = +1
Query: 523 GIAVAETFRHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCER 702
G+ VAE F + I ASL Y FLF FA+GFYLLL+ L +DL W++ AK+ C
Sbjct: 186 GVLVAEIFEYTPGIQTASLSVYLKTNLFLFLFALGFYLLLRHLDIDLLWSVPIAKKWCAN 245
Query: 703 PEWVHIDTTPFASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLH 882
P+W+HIDTTPFA L++N+G LFGLG A+NS M+ + C+G+ FRL C + SL L
Sbjct: 246 PDWIHIDTTPFAGLVRNLGVLFGLGFAINSEMFLRSCRGENGYGLSFRLLCALVSLTTLQ 305
Query: 883 FFDSLKPPSQIELIFYVLSFLQSAAVPLASVSLIPYCL 996
+ +K P+ E +FYVLSF +SA++PL V+LIPYC+
Sbjct: 306 LYHFIKIPTDTEYLFYVLSFCKSASIPLTVVALIPYCI 343
>ref|XP_002685355.1| PREDICTED: islet-specific glucose-6-phosphatase-related
protein-like [Bos taurus].
Length = 355
Score = 172 bits (435), Expect = 6e-43
Identities = 75/132 (56%), Positives = 98/132 (74%)
Frame = +3
Query: 90 MNLLHNFGIQSTRYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIKLLWV 269
M+ LH G+ ++LQ +Y+ ++ +S + D RN F + FP+WF L + VG K++WV
Sbjct: 1 MDFLHRNGVLVIQHLQKDYRAYYNFLNFMSNVGDPRNIFSIYFPLWFQLNQTVGTKMIWV 60
Query: 270 AVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTA 449
AVIGDW NL+FKWILFG RPYWWV +T Y N S P ++QFP TCETGPGSPSGHAMG++
Sbjct: 61 AVIGDWFNLIFKWILFGHRPYWWVQETQIYPNHSSPCLEQFPTTCETGPGSPSGHAMGSS 120
Query: 450 GVYYVMVTSALS 485
V+YVMVT+ALS
Sbjct: 121 CVWYVMVTAALS 132
Score = 168 bits (426), Expect = 6e-42
Identities = 78/158 (49%), Positives = 106/158 (67%)
Frame = +1
Query: 523 GIAVAETFRHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCER 702
G+ VAE F + I ASL Y FLF FA+GFYLLL+ L +DL W++ AK+ C
Sbjct: 186 GVLVAEIFEYTPGIQTASLSVYLKTNLFLFLFALGFYLLLRHLDIDLLWSVPIAKKWCAN 245
Query: 703 PEWVHIDTTPFASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLH 882
P+W+HIDTTPFA L++N+G LFGLG A+NS M+ + C+G+ FRL C + SL L
Sbjct: 246 PDWIHIDTTPFAGLVRNLGVLFGLGFAINSEMFLRSCRGENGYGLSFRLLCALVSLTTLQ 305
Query: 883 FFDSLKPPSQIELIFYVLSFLQSAAVPLASVSLIPYCL 996
+ +K P+ E +FYVLSF +SA++PL V+LIPYC+
Sbjct: 306 LYHFIKIPTDTEYLFYVLSFCKSASIPLTVVALIPYCI 343
>ref|NP_899208.2| glucose-6-phosphatase 3 [Bos taurus].
Length = 346
Score = 112 bits (281), Expect = 4e-25
Identities = 52/125 (41%), Positives = 76/125 (60%)
Frame = +3
Query: 111 GIQSTRYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIKLLWVAVIGDWL 290
GI LQ ++ ++ V+ + D ++ F FP ++ VGI +LW+++I +WL
Sbjct: 8 GIAMAEALQNQLPWLENVWLWVTFLGDPKSLFLFYFPAAYYASRRVGIAVLWISLITEWL 67
Query: 291 NLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMV 470
NLVFKW LFG RP+WWV ++ YYS + QFP +CETGPGSPSGH M T + ++
Sbjct: 68 NLVFKWFLFGDRPFWWVHESGYYSQAPAQ-VHQFPSSCETGPGSPSGHCMITGAALWPIM 126
Query: 471 TSALS 485
T+ S
Sbjct: 127 TAVSS 131
Score = 92.8 bits (229), Expect = 4e-19
Identities = 55/138 (39%), Positives = 80/138 (57%)
Frame = +1
Query: 577 LKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCERPEWVHIDTTPFASLLKNV 756
L Y L + L A Y L LG+DLSW++ A + CERPEWVH+D+ PFASL ++
Sbjct: 196 LSFYGLTSLALLLGASLIYWTLFTLGLDLSWSINLASKWCERPEWVHLDSRPFASLSRDS 255
Query: 757 GTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLHFFDSLKPPSQIELIFYVL 936
G GLG+AL+S Y Q + L + +L C+V ++ LL + L P QI L FY+
Sbjct: 256 GAALGLGIALHSPCYAQVRRAHLG--YGQKLVCLVLAMGLLGPLNWLGYPPQISL-FYIF 312
Query: 937 SFLQSAAVPLASVSLIPY 990
+FL+ P ++L+P+
Sbjct: 313 NFLKYTLWPCLVLALVPW 330
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,714,929
Number of extensions: 1052861
Number of successful extensions: 3767
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3759
Number of HSP's successfully gapped: 8
Length of query: 339
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 236
Effective length of database: 14,273,310
Effective search space: 3368501160
Effective search space used: 3368501160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001912
(1017 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_855553.1| PREDICTED: glucose-6-phosphatase [Canis familia... 303 e-165
Alignment gi|NP_001002993.1| glucose-6-phosphatase [Canis lupus familiari... 301 e-164
Alignment gi|XP_545511.2| PREDICTED: similar to glucose-6-phosphatase, ca... 173 2e-43
Alignment gi|XP_548065.2| PREDICTED: similar to glucose-6-phosphatase cat... 114 1e-25
>ref|XP_855553.1| PREDICTED: glucose-6-phosphatase [Canis familiaris].
Length = 357
Score = 303 bits (775), Expect(2) = e-165
Identities = 148/165 (89%), Positives = 154/165 (93%)
Frame = +1
Query: 523 GIAVAETFRHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCER 702
GIAVAETFRHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDL WTLEKA+R CER
Sbjct: 188 GIAVAETFRHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLLWTLEKARRWCER 247
Query: 703 PEWVHIDTTPFASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLH 882
PEWVHIDTTPFASLLKNVGTLFGLG+ALNSSMYR+ CKGKLSKWFPFRLSCIV SL+LLH
Sbjct: 248 PEWVHIDTTPFASLLKNVGTLFGLGVALNSSMYRESCKGKLSKWFPFRLSCIVVSLILLH 307
Query: 883 FFDSLKPPSQIELIFYVLSFLQSAAVPLASVSLIPYCLSRALGQP 1017
FDSLKPPSQ ELIFY LSF +SAAVPLASVSLIPYCL+R QP
Sbjct: 308 LFDSLKPPSQTELIFYTLSFCKSAAVPLASVSLIPYCLARVFDQP 352
Score = 297 bits (760), Expect(2) = e-165
Identities = 137/149 (91%), Positives = 145/149 (97%)
Frame = +3
Query: 78 MEEGMNLLHNFGIQSTRYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIK 257
ME+GM++LH+FGIQST YLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHL+EAVGIK
Sbjct: 1 MEKGMDVLHDFGIQSTHYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLREAVGIK 60
Query: 258 LLWVAVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHA 437
LLWVAVIGDWLNLVFKWILFGQRPYWWV+DTDYYSNTSVPLIKQFPVTCETGPGSPSGHA
Sbjct: 61 LLWVAVIGDWLNLVFKWILFGQRPYWWVMDTDYYSNTSVPLIKQFPVTCETGPGSPSGHA 120
Query: 438 MGTAGVYYVMVTSALSIIRGKKKPTYGFR 524
MGTAGVYYVMVTS LSI RG+K+PTY FR
Sbjct: 121 MGTAGVYYVMVTSTLSIFRGRKRPTYRFR 149
>ref|NP_001002993.1| glucose-6-phosphatase [Canis lupus familiaris].
Length = 357
Score = 301 bits (771), Expect(2) = e-164
Identities = 147/165 (89%), Positives = 153/165 (92%)
Frame = +1
Query: 523 GIAVAETFRHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCER 702
GIAVAETFRHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDL WTLEKA+R CER
Sbjct: 188 GIAVAETFRHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLLWTLEKARRWCER 247
Query: 703 PEWVHIDTTPFASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLH 882
PEWVHIDTTPFASLLKNVGTLFGLG+ LNSSMYR+ CKGKLSKWFPFRLSCIV SL+LLH
Sbjct: 248 PEWVHIDTTPFASLLKNVGTLFGLGVTLNSSMYRESCKGKLSKWFPFRLSCIVVSLILLH 307
Query: 883 FFDSLKPPSQIELIFYVLSFLQSAAVPLASVSLIPYCLSRALGQP 1017
FDSLKPPSQ ELIFY LSF +SAAVPLASVSLIPYCL+R QP
Sbjct: 308 LFDSLKPPSQTELIFYTLSFCKSAAVPLASVSLIPYCLARVFDQP 352
Score = 297 bits (760), Expect(2) = e-164
Identities = 137/149 (91%), Positives = 145/149 (97%)
Frame = +3
Query: 78 MEEGMNLLHNFGIQSTRYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIK 257
ME+GM++LH+FGIQST YLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHL+EAVGIK
Sbjct: 1 MEKGMDVLHDFGIQSTHYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLREAVGIK 60
Query: 258 LLWVAVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHA 437
LLWVAVIGDWLNLVFKWILFGQRPYWWV+DTDYYSNTSVPLIKQFPVTCETGPGSPSGHA
Sbjct: 61 LLWVAVIGDWLNLVFKWILFGQRPYWWVMDTDYYSNTSVPLIKQFPVTCETGPGSPSGHA 120
Query: 438 MGTAGVYYVMVTSALSIIRGKKKPTYGFR 524
MGTAGVYYVMVTS LSI RG+K+PTY FR
Sbjct: 121 MGTAGVYYVMVTSTLSIFRGRKRPTYRFR 149
>ref|XP_545511.2| PREDICTED: similar to glucose-6-phosphatase, catalytic, related
[Canis familiaris].
Length = 371
Score = 173 bits (439), Expect = 2e-43
Identities = 75/141 (53%), Positives = 103/141 (73%)
Frame = +3
Query: 63 GQRVRMEEGMNLLHNFGIQSTRYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQE 242
G ++ + M+ LH G+ + ++LQ +Y+ ++ +S + D RN F + FP+WF L +
Sbjct: 7 GAGLQEKSKMDFLHRNGVLAIQHLQKDYRAYYNFLNFMSNVGDPRNIFSIYFPLWFQLNQ 66
Query: 243 AVGIKLLWVAVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGS 422
+G K++WVAVIGDW NL+FKWILFG RPYWWV +T Y N S P ++QFP TCETGPGS
Sbjct: 67 TIGTKMIWVAVIGDWFNLIFKWILFGHRPYWWVQETQIYPNHSSPCLEQFPTTCETGPGS 126
Query: 423 PSGHAMGTAGVYYVMVTSALS 485
PSGHAMG++ V+YVMVT+ALS
Sbjct: 127 PSGHAMGSSCVWYVMVTAALS 147
Score = 169 bits (428), Expect = 4e-42
Identities = 80/158 (50%), Positives = 107/158 (67%)
Frame = +1
Query: 523 GIAVAETFRHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCER 702
G+ VAE F H I ASL Y FLF FA+GFYLLL+ L +DL W++ AK+ C
Sbjct: 202 GMLVAEAFEHTPGIQTASLSTYLKTNLFLFLFALGFYLLLRLLDIDLLWSVPIAKKWCAN 261
Query: 703 PEWVHIDTTPFASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLH 882
P+W+HIDTTPFA L++N+G LFGLG A+NS M+ + C+G+ FRL C ASL+ L
Sbjct: 262 PDWIHIDTTPFAGLVRNLGVLFGLGFAINSEMFLRSCRGENGYKLSFRLLCAGASLMTLQ 321
Query: 883 FFDSLKPPSQIELIFYVLSFLQSAAVPLASVSLIPYCL 996
+ +K P+ E +FYVLSF +SA++PL V+LIPYC+
Sbjct: 322 LYHFIKIPTHAEHLFYVLSFCKSASIPLTVVALIPYCI 359
>ref|XP_548065.2| PREDICTED: similar to glucose-6-phosphatase catalytic subunit 3
[Canis familiaris].
Length = 346
Score = 114 bits (286), Expect = 1e-25
Identities = 53/130 (40%), Positives = 79/130 (60%)
Frame = +3
Query: 111 GIQSTRYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIKLLWVAVIGDWL 290
GI LQ ++ ++ V+ + D ++ F FP ++ VGI +LW+++I +WL
Sbjct: 8 GIAMAEALQNQLPWLENVWLWVTFLGDPKSLFLFYFPAAYYTSRRVGIAVLWISLITEWL 67
Query: 291 NLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMV 470
NLVFKW LFG RPYWWV ++ YYS+ + QFP +CETGPGSPSGH M T + ++
Sbjct: 68 NLVFKWFLFGDRPYWWVHESGYYSHAPAQ-VHQFPSSCETGPGSPSGHCMITGAALWPIM 126
Query: 471 TSALSIIRGK 500
T+ S + +
Sbjct: 127 TAISSQVASR 136
Score = 96.7 bits (239), Expect = 3e-20
Identities = 55/138 (39%), Positives = 82/138 (59%)
Frame = +1
Query: 577 LKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCERPEWVHIDTTPFASLLKNV 756
L Y L + L A Y +L LG+DLSW++ A + CERPEWVH+D+ PFASL ++
Sbjct: 196 LSFYGLTSLALLLGASLIYWILVTLGLDLSWSIRLASKWCERPEWVHVDSRPFASLSRDS 255
Query: 757 GTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLHFFDSLKPPSQIELIFYVL 936
G GLG+AL+S Y Q + +L +++C+V ++ LL D L P QI L FY+
Sbjct: 256 GAALGLGIALHSPCYTQVRRAQLG--HGQKIACLVLAMGLLGPLDWLGHPPQISL-FYIF 312
Query: 937 SFLQSAAVPLASVSLIPY 990
+FL+ P ++L+P+
Sbjct: 313 NFLKFTLWPCLVLALVPW 330
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,320,199
Number of extensions: 1074907
Number of successful extensions: 3674
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3672
Number of HSP's successfully gapped: 8
Length of query: 339
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 236
Effective length of database: 15,440,896
Effective search space: 3644051456
Effective search space used: 3644051456
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001912
(1017 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000142.1| glucose-6-phosphatase [Homo sapiens]. 300 e-163
Alignment gi|NP_001075155.1| glucose-6-phosphatase 2 isoform 2 [Homo sapi... 167 1e-41
Alignment gi|NP_066999.1| glucose-6-phosphatase 2 isoform 1 [Homo sapiens]. 167 1e-41
Alignment gi|NP_612396.1| glucose-6-phosphatase 3 [Homo sapiens]. 109 5e-24
>ref|NP_000142.1| glucose-6-phosphatase [Homo sapiens].
Length = 357
Score = 300 bits (769), Expect(2) = e-163
Identities = 141/149 (94%), Positives = 144/149 (96%)
Frame = +3
Query: 78 MEEGMNLLHNFGIQSTRYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIK 257
MEEGMN+LH+FGIQST YLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIK
Sbjct: 1 MEEGMNVLHDFGIQSTHYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIK 60
Query: 258 LLWVAVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHA 437
LLWVAVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHA
Sbjct: 61 LLWVAVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHA 120
Query: 438 MGTAGVYYVMVTSALSIIRGKKKPTYGFR 524
MGTAGVYYVMVTS LSI +GK KPTY FR
Sbjct: 121 MGTAGVYYVMVTSTLSIFQGKIKPTYRFR 149
Score = 293 bits (750), Expect(2) = e-163
Identities = 143/165 (86%), Positives = 153/165 (92%)
Frame = +1
Query: 523 GIAVAETFRHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCER 702
GIAV ETF HI SIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDL WTLEKA+R CE+
Sbjct: 188 GIAVTETFSHIHSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLLWTLEKAQRWCEQ 247
Query: 703 PEWVHIDTTPFASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLH 882
PEWVHIDTTPFASLLKN+GTLFGLGLALNSSMYR+ CKGKLSKW PFRLS IVASLVLLH
Sbjct: 248 PEWVHIDTTPFASLLKNLGTLFGLGLALNSSMYRESCKGKLSKWLPFRLSSIVASLVLLH 307
Query: 883 FFDSLKPPSQIELIFYVLSFLQSAAVPLASVSLIPYCLSRALGQP 1017
FDSLKPPSQ+EL+FYVLSF +SA VPLASVS+IPYCL++ LGQP
Sbjct: 308 VFDSLKPPSQVELVFYVLSFCKSAVVPLASVSVIPYCLAQVLGQP 352
>ref|NP_001075155.1| glucose-6-phosphatase 2 isoform 2 [Homo sapiens].
Length = 154
Score = 167 bits (424), Expect = 1e-41
Identities = 74/132 (56%), Positives = 96/132 (72%)
Frame = +3
Query: 90 MNLLHNFGIQSTRYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIKLLWV 269
M+ LH G+ ++LQ +Y+ + +S + D RN F++ FP+ F + VG K++WV
Sbjct: 1 MDFLHRNGVLIIQHLQKDYRAYYTFLNFMSNVGDPRNIFFIYFPLCFQFNQTVGTKMIWV 60
Query: 270 AVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTA 449
AVIGDWLNL+FKWILFG RPYWWV +T Y N S P ++QFP TCETGPGSPSGHAMG +
Sbjct: 61 AVIGDWLNLIFKWILFGHRPYWWVQETQIYPNHSSPCLEQFPTTCETGPGSPSGHAMGAS 120
Query: 450 GVYYVMVTSALS 485
V+YVMVT+ALS
Sbjct: 121 CVWYVMVTAALS 132
>ref|NP_066999.1| glucose-6-phosphatase 2 isoform 1 [Homo sapiens].
Length = 355
Score = 167 bits (424), Expect = 1e-41
Identities = 74/132 (56%), Positives = 96/132 (72%)
Frame = +3
Query: 90 MNLLHNFGIQSTRYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIKLLWV 269
M+ LH G+ ++LQ +Y+ + +S + D RN F++ FP+ F + VG K++WV
Sbjct: 1 MDFLHRNGVLIIQHLQKDYRAYYTFLNFMSNVGDPRNIFFIYFPLCFQFNQTVGTKMIWV 60
Query: 270 AVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTA 449
AVIGDWLNL+FKWILFG RPYWWV +T Y N S P ++QFP TCETGPGSPSGHAMG +
Sbjct: 61 AVIGDWLNLIFKWILFGHRPYWWVQETQIYPNHSSPCLEQFPTTCETGPGSPSGHAMGAS 120
Query: 450 GVYYVMVTSALS 485
V+YVMVT+ALS
Sbjct: 121 CVWYVMVTAALS 132
Score = 162 bits (410), Expect = 5e-40
Identities = 78/164 (47%), Positives = 106/164 (64%)
Frame = +1
Query: 523 GIAVAETFRHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCER 702
G+ VAE F H I ASL Y FLF FA+GFYLLL+ L +DL W++ AK+ C
Sbjct: 186 GMLVAEAFEHTPGIQTASLGTYLKTNLFLFLFAVGFYLLLRVLNIDLLWSVPIAKKWCAN 245
Query: 703 PEWVHIDTTPFASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLH 882
P+W+HIDTTPFA L++N+G LFGLG A+NS M+ C+G + FRL C + SL +L
Sbjct: 246 PDWIHIDTTPFAGLVRNLGVLFGLGFAINSEMFLLSCRGGNNYTLSFRLLCALTSLTILQ 305
Query: 883 FFDSLKPPSQIELIFYVLSFLQSAAVPLASVSLIPYCLSRALGQ 1014
+ L+ P+ E +FYVLSF +SA++PL V+ IPY + + Q
Sbjct: 306 LYHFLQIPTHEEHLFYVLSFCKSASIPLTVVAFIPYSVHMLMKQ 349
>ref|NP_612396.1| glucose-6-phosphatase 3 [Homo sapiens].
Length = 346
Score = 109 bits (272), Expect = 5e-24
Identities = 50/125 (40%), Positives = 75/125 (60%)
Frame = +3
Query: 111 GIQSTRYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIKLLWVAVIGDWL 290
GI LQ ++ ++ ++ + D + F FP ++ VGI +LW+++I +WL
Sbjct: 8 GIVIAEALQNQLAWLENVWLWITFLGDPKILFLFYFPAAYYASRRVGIAVLWISLITEWL 67
Query: 291 NLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMV 470
NL+FKW LFG RP+WWV ++ YYS + QFP +CETGPGSPSGH M T + ++
Sbjct: 68 NLIFKWFLFGDRPFWWVHESGYYSQAPAQ-VHQFPSSCETGPGSPSGHCMITGAALWPIM 126
Query: 471 TSALS 485
T+ S
Sbjct: 127 TALSS 131
Score = 92.8 bits (229), Expect = 4e-19
Identities = 49/122 (40%), Positives = 76/122 (62%)
Frame = +1
Query: 631 YLLLKGLGVDLSWTLEKAKRRCERPEWVHIDTTPFASLLKNVGTLFGLGLALNSSMYRQG 810
Y L LG+DLSW++ A + CERPEW+H+D+ PFASL ++ G GLG+AL+S Y Q
Sbjct: 214 YWTLFTLGLDLSWSISLAFKWCERPEWIHVDSRPFASLSRDSGAALGLGIALHSPCYAQV 273
Query: 811 CKGKLSKWFPFRLSCIVASLVLLHFFDSLKPPSQIELIFYVLSFLQSAAVPLASVSLIPY 990
+ +L +++C+V ++ LL D L P QI L FY+ +FL+ P ++L+P+
Sbjct: 274 RRAQLGN--GQKIACLVLAMGLLGPLDWLGHPPQISL-FYIFNFLKYTLWPCLVLALVPW 330
Query: 991 CL 996
+
Sbjct: 331 AV 332
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,636,488
Number of extensions: 1063431
Number of successful extensions: 3891
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3887
Number of HSP's successfully gapped: 7
Length of query: 339
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 236
Effective length of database: 14,901,872
Effective search space: 3516841792
Effective search space used: 3516841792
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001912
(1017 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032087.2| glucose-6-phosphatase [Mus musculus]. 298 e-157
Alignment gi|NP_067306.1| glucose-6-phosphatase 2 [Mus musculus]. 171 8e-43
Alignment gi|NP_787949.2| glucose-6-phosphatase 3 [Mus musculus]. 114 9e-26
>ref|NP_032087.2| glucose-6-phosphatase [Mus musculus].
Length = 357
Score = 298 bits (763), Expect(2) = e-157
Identities = 136/149 (91%), Positives = 143/149 (95%)
Frame = +3
Query: 78 MEEGMNLLHNFGIQSTRYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIK 257
MEEGMN+LH+FGIQSTRYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHL+E VGI
Sbjct: 1 MEEGMNILHDFGIQSTRYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLKETVGIN 60
Query: 258 LLWVAVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHA 437
LLWVAV+GDW NLVFKWILFGQRPYWWVLDTDYYSN+SVP+IKQFPVTCETGPGSPSGHA
Sbjct: 61 LLWVAVVGDWFNLVFKWILFGQRPYWWVLDTDYYSNSSVPIIKQFPVTCETGPGSPSGHA 120
Query: 438 MGTAGVYYVMVTSALSIIRGKKKPTYGFR 524
MG AGVYYVMVTS L+I RGKKKPTYGFR
Sbjct: 121 MGAAGVYYVMVTSTLAIFRGKKKPTYGFR 149
Score = 276 bits (705), Expect(2) = e-157
Identities = 134/164 (81%), Positives = 146/164 (89%)
Frame = +1
Query: 523 GIAVAETFRHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCER 702
GIAVAETF HI+ IYNASL+KY LIT FLF FA+GFYLLLKGLGVDL WTLEKAKR CER
Sbjct: 188 GIAVAETFSHIRGIYNASLRKYCLITIFLFGFALGFYLLLKGLGVDLLWTLEKAKRWCER 247
Query: 703 PEWVHIDTTPFASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLH 882
PEWVH+DTTPFASL KN+GTL GLGLALNSSMYR+ CKG+LSK PFR +CIVASLVLLH
Sbjct: 248 PEWVHLDTTPFASLFKNLGTLLGLGLALNSSMYRKSCKGELSKLLPFRFACIVASLVLLH 307
Query: 883 FFDSLKPPSQIELIFYVLSFLQSAAVPLASVSLIPYCLSRALGQ 1014
FDSLKPPSQ+ELIFY+LSF +SA VP ASVSLIPYCL+R LGQ
Sbjct: 308 LFDSLKPPSQVELIFYILSFCKSATVPFASVSLIPYCLARILGQ 351
>ref|NP_067306.1| glucose-6-phosphatase 2 [Mus musculus].
Length = 355
Score = 171 bits (433), Expect = 8e-43
Identities = 74/132 (56%), Positives = 97/132 (73%)
Frame = +3
Query: 90 MNLLHNFGIQSTRYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIKLLWV 269
M+ LH G+ +LQ +Y+ + +S + D RN F + FP+WF L + VG K++WV
Sbjct: 1 MDFLHRSGVLIIHHLQEDYRTYYGFLNFMSNVGDPRNIFSIYFPLWFQLNQNVGTKMIWV 60
Query: 270 AVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTA 449
AVIGDW NL+FKWILFG RPYWW+ +T+ Y N S P ++QFP TCETGPGSPSGHAMG++
Sbjct: 61 AVIGDWFNLIFKWILFGHRPYWWIQETEIYPNHSSPCLEQFPTTCETGPGSPSGHAMGSS 120
Query: 450 GVYYVMVTSALS 485
V+YVMVT+ALS
Sbjct: 121 CVWYVMVTAALS 132
Score = 163 bits (412), Expect = 2e-40
Identities = 75/158 (47%), Positives = 107/158 (67%)
Frame = +1
Query: 523 GIAVAETFRHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCER 702
G+ VAE F H ++ ASL Y FLF FA+GFYLLL+ G+DL W++ AK+ C
Sbjct: 186 GMLVAEAFEHTPGVHMASLSVYLKTNVFLFLFALGFYLLLRLFGIDLLWSVPIAKKWCAN 245
Query: 703 PEWVHIDTTPFASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLH 882
P+W+HID+TPFA L++N+G LFGLG A+NS M+ + C+G+ FRL C + SL +
Sbjct: 246 PDWIHIDSTPFAGLVRNLGVLFGLGFAINSEMFLRSCQGENGTKPSFRLLCALTSLTTMQ 305
Query: 883 FFDSLKPPSQIELIFYVLSFLQSAAVPLASVSLIPYCL 996
+ +K P+ E +FY+LSF +SA++PL V+LIPYC+
Sbjct: 306 LYRFIKIPTHAEPLFYLLSFCKSASIPLMVVALIPYCV 343
>ref|NP_787949.2| glucose-6-phosphatase 3 [Mus musculus].
Length = 346
Score = 114 bits (286), Expect = 9e-26
Identities = 54/146 (36%), Positives = 83/146 (56%), Gaps = 5/146 (3%)
Frame = +3
Query: 111 GIQSTRYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIKLLWVAVIGDWL 290
GI LQ ++ ++ V+ + D +N F FP ++ +GI +LW+ I +WL
Sbjct: 8 GIIMAEALQNRLPGLENMWLWVTFLGDPKNLFQFCFPAAYYASRRLGISVLWITFIAEWL 67
Query: 291 NLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMV 470
NLVFKW LFG RP+WWV ++ Y + T + I QFP +CETGPGSPSGH M T + ++
Sbjct: 68 NLVFKWFLFGDRPFWWVHESGYSTQTPIQ-IHQFPSSCETGPGSPSGHCMITGAALWPVM 126
Query: 471 TSALSIIRGKKKPTY-----GFRHCS 533
T+ S + + + + G +C+
Sbjct: 127 TAISSQVASRSRSPWVRVIPGLAYCT 152
Score = 93.2 bits (230), Expect = 3e-19
Identities = 54/138 (39%), Positives = 80/138 (57%)
Frame = +1
Query: 577 LKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCERPEWVHIDTTPFASLLKNV 756
L Y L L A Y L LG+DLSW++ A + CERPEWVH+D+ PFASL ++
Sbjct: 196 LSFYGLTALALMLGASLMYWTLFTLGLDLSWSINLASKWCERPEWVHMDSRPFASLSRDS 255
Query: 757 GTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLHFFDSLKPPSQIELIFYVL 936
G+ GLG+AL++ Y Q + L +++C V ++ LL F + L P QI L FY+
Sbjct: 256 GSALGLGIALHTPCYAQIRRAHLGN--GQKIACFVLAMGLLVFLEWLGYPPQISL-FYIF 312
Query: 937 SFLQSAAVPLASVSLIPY 990
+FL+ P ++L+P+
Sbjct: 313 NFLKYTLWPCLVLALVPW 330
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,568,174
Number of extensions: 888265
Number of successful extensions: 2910
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2905
Number of HSP's successfully gapped: 6
Length of query: 339
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 237
Effective length of database: 12,553,887
Effective search space: 2975271219
Effective search space used: 2975271219
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001912
(1017 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001106916.1| glucose-6-phosphatase [Sus scrofa]. 328 e-177
Alignment gi|XP_003133509.2| PREDICTED: glucose-6-phosphatase 2-like [Sus... 169 2e-42
Alignment gi|XP_003131402.1| PREDICTED: glucose-6-phosphatase 3-like [Sus... 112 3e-25
>ref|NP_001106916.1| glucose-6-phosphatase [Sus scrofa].
Length = 357
Score = 328 bits (842), Expect(2) = e-177
Identities = 163/165 (98%), Positives = 164/165 (99%)
Frame = +1
Query: 523 GIAVAETFRHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCER 702
GIAVAETFRHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCER
Sbjct: 188 GIAVAETFRHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCER 247
Query: 703 PEWVHIDTTPFASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLH 882
PEWVHIDTTPFASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLH
Sbjct: 248 PEWVHIDTTPFASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLH 307
Query: 883 FFDSLKPPSQIELIFYVLSFLQSAAVPLASVSLIPYCLSRALGQP 1017
FFDSLKPPSQIELIFYVLSF +SAAVPLASVSLIPYCLSRALGQP
Sbjct: 308 FFDSLKPPSQIELIFYVLSFCKSAAVPLASVSLIPYCLSRALGQP 352
Score = 312 bits (799), Expect(2) = e-177
Identities = 148/149 (99%), Positives = 148/149 (99%)
Frame = +3
Query: 78 MEEGMNLLHNFGIQSTRYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIK 257
MEEGMNLLHNFGIQSTRYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIK
Sbjct: 1 MEEGMNLLHNFGIQSTRYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIK 60
Query: 258 LLWVAVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHA 437
LLWVAVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSG A
Sbjct: 61 LLWVAVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGLA 120
Query: 438 MGTAGVYYVMVTSALSIIRGKKKPTYGFR 524
MGTAGVYYVMVTSALSIIRGKKKPTYGFR
Sbjct: 121 MGTAGVYYVMVTSALSIIRGKKKPTYGFR 149
>ref|XP_003133509.2| PREDICTED: glucose-6-phosphatase 2-like [Sus scrofa].
Length = 154
Score = 169 bits (429), Expect = 2e-42
Identities = 74/131 (56%), Positives = 96/131 (73%)
Frame = +3
Query: 90 MNLLHNFGIQSTRYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIKLLWV 269
M+ LH G+ ++LQ +Y+ + +S + D RN F + FP+WF L + VG K++WV
Sbjct: 1 MDFLHRNGVLLIQHLQKDYRAYYSFLNFMSNVGDPRNIFSIYFPLWFQLNQRVGTKMIWV 60
Query: 270 AVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTA 449
AVIGDW NL+FKWILFG RPYWWV +T Y N S P ++QFP TCETGPGSPSGHAMG++
Sbjct: 61 AVIGDWFNLIFKWILFGHRPYWWVQETQIYPNHSSPCLEQFPTTCETGPGSPSGHAMGSS 120
Query: 450 GVYYVMVTSAL 482
V+YVMVT+AL
Sbjct: 121 CVWYVMVTAAL 131
>ref|XP_003131402.1| PREDICTED: glucose-6-phosphatase 3-like [Sus scrofa].
Length = 346
Score = 112 bits (280), Expect = 3e-25
Identities = 52/125 (41%), Positives = 76/125 (60%)
Frame = +3
Query: 111 GIQSTRYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIKLLWVAVIGDWL 290
GI LQ ++ ++ V+ + D ++ F FP ++ VGI +LW+++I +WL
Sbjct: 8 GIAMAEALQNQLPWLENVWLWVTFLGDPKSLFLFYFPAAYYASRRVGIAVLWISLITEWL 67
Query: 291 NLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMV 470
NLVFKW LFG RP+WWV ++ YYS + QFP +CETGPGSPSGH M T + ++
Sbjct: 68 NLVFKWFLFGDRPFWWVHESGYYSQAPAQ-VHQFPSSCETGPGSPSGHCMITGAALWPIM 126
Query: 471 TSALS 485
T+ S
Sbjct: 127 TAISS 131
Score = 95.9 bits (237), Expect = 3e-20
Identities = 56/138 (40%), Positives = 81/138 (58%)
Frame = +1
Query: 577 LKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCERPEWVHIDTTPFASLLKNV 756
L Y L + L A Y L LG+DLSW++ A + CERPEWVH+D+ PFASL ++
Sbjct: 196 LSFYGLTSLALLLGASLIYWTLFTLGLDLSWSISLASKWCERPEWVHLDSRPFASLSRDS 255
Query: 757 GTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLHFFDSLKPPSQIELIFYVL 936
G GLG+AL+S Y Q + L + +L+C+V ++ LL D L P QI L FY+
Sbjct: 256 GAALGLGIALHSPCYAQVRRAHLG--YGQKLACLVLAMGLLGPLDWLGYPPQISL-FYIF 312
Query: 937 SFLQSAAVPLASVSLIPY 990
+FL+ P ++L+P+
Sbjct: 313 NFLKYTLWPCLVLALVPW 330
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,951,420
Number of extensions: 676732
Number of successful extensions: 2308
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2306
Number of HSP's successfully gapped: 5
Length of query: 339
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 239
Effective length of database: 8,854,232
Effective search space: 2116161448
Effective search space used: 2116161448
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001912
(1017 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL894545.1| Sus scrofa unplaced genomic scaffold chrU_scaffold32 218 5e-54
gb|GL892101.1| Sus scrofa unplaced genomic scaffold chrU_scaffold10 192 3e-46
>gb|GL894545.1| Sus scrofa unplaced genomic scaffold chrU_scaffold32
Length = 110
Score = 218 bits (110), Expect = 5e-54
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 80 ggaggagggaatgaaccttctccataactttgggatccaatcaacgcgctacctccaggt 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 ggaggagggaatgaaccttctccataactttgggatccaatcaacgcgctacctccaggt 51
Query: 140 gaattaccaggactcccaggattggttcatcttggtatctgtgatcgcgg 189
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50 gaattaccaggactcccaggattggttcatcttggtatctgtgatcgcgg 1
>gb|GL892101.1| Sus scrofa unplaced genomic scaffold chrU_scaffold10
Length = 101
Score = 192 bits (97), Expect = 3e-46
Identities = 97/97 (100%)
Strand = Plus / Minus
Query: 523 ggcattgcagttgctgagactttccgccacattcagagtatctacaacgccagcctcaag 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 ggcattgcagttgctgagactttccgccacattcagagtatctacaacgccagcctcaag 38
Query: 583 aagtattttctcattaccttcttcctgttcagttttg 619
|||||||||||||||||||||||||||||||||||||
Sbjct: 37 aagtattttctcattaccttcttcctgttcagttttg 1
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,190,086
Number of extensions: 242
Number of successful extensions: 242
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 2
Length of query: 1017
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 996
Effective length of database: 2,808,413,156
Effective search space: 2797179503376
Effective search space used: 2797179503376
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)